0s autopkgtest [13:09:46]: starting date and time: 2024-03-16 13:09:46+0000 0s autopkgtest [13:09:46]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:09:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i76bs5l2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:netcdf,src:curl,src:gnutls28,src:hdf5,src:libpsl,src:nettle,src:openssl,src:orthanc-python --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=netcdf/1:4.9.2-5ubuntu3 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu3 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-23.secgroup --name adt-noble-arm64-pymol-20240316-130946-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 116s autopkgtest [13:11:42]: testbed dpkg architecture: arm64 117s autopkgtest [13:11:43]: testbed apt version: 2.7.12 117s autopkgtest [13:11:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 117s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 118s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 118s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 118s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 118s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 118s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 118s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 118s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 118s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 118s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 118s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 118s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 118s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 120s Fetched 9092 kB in 2s (4929 kB/s) 121s Reading package lists... 123s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade... 125s The following packages will be REMOVED: 125s libssl3 125s The following NEW packages will be installed: 125s libssl3t64 125s The following packages have been kept back: 125s curl 125s The following packages will be upgraded: 125s openssl ubuntu-minimal ubuntu-standard 125s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 125s Need to get 2775 kB of archives. 125s After this operation, 72.7 kB of additional disk space will be used. 125s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 125s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 125s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 125s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 126s Fetched 2775 kB in 1s (4118 kB/s) 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 126s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 126s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 126s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 126s wget depends on libssl3 (>= 3.0.0). 126s u-boot-tools depends on libssl3 (>= 3.0.0). 126s tnftp depends on libssl3 (>= 3.0.0). 126s tcpdump depends on libssl3 (>= 3.0.0). 126s systemd-resolved depends on libssl3 (>= 3.0.0). 126s systemd depends on libssl3 (>= 3.0.0). 126s sudo depends on libssl3 (>= 3.0.0). 126s sbsigntool depends on libssl3 (>= 3.0.0). 126s rsync depends on libssl3 (>= 3.0.0). 126s python3-cryptography depends on libssl3 (>= 3.0.0). 126s openssh-server depends on libssl3 (>= 3.0.10). 126s openssh-client depends on libssl3 (>= 3.0.10). 126s mtd-utils depends on libssl3 (>= 3.0.0). 126s mokutil depends on libssl3 (>= 3.0.0). 126s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 126s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 126s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 126s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 126s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 126s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 126s libnvme1 depends on libssl3 (>= 3.0.0). 126s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 126s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 126s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 126s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 126s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 126s kmod depends on libssl3 (>= 3.0.0). 126s dhcpcd-base depends on libssl3 (>= 3.0.0). 126s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 126s 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 126s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 126s Selecting previously unselected package libssl3t64:arm64. 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 126s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 126s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 126s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 126s Unpacking ubuntu-minimal (1.536) over (1.535) ... 126s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 126s Unpacking ubuntu-standard (1.536) over (1.535) ... 126s Setting up ubuntu-minimal (1.536) ... 126s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 126s Setting up ubuntu-standard (1.536) ... 126s Setting up openssl (3.0.13-0ubuntu1) ... 126s Processing triggers for man-db (2.12.0-3) ... 127s Processing triggers for libc-bin (2.39-0ubuntu2) ... 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 129s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 129s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 129s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 129s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 130s Reading package lists... 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Calculating upgrade... 132s The following packages have been kept back: 132s curl 132s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 136s autopkgtest [13:12:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 136s autopkgtest [13:12:02]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 140s Get:1 http://ftpmaster.internal/ubuntu noble/universe pymol 2.5.0+dfsg-1build4 (dsc) [2317 B] 140s Get:2 http://ftpmaster.internal/ubuntu noble/universe pymol 2.5.0+dfsg-1build4 (tar) [6897 kB] 140s Get:3 http://ftpmaster.internal/ubuntu noble/universe pymol 2.5.0+dfsg-1build4 (diff) [57.4 kB] 140s gpgv: Signature made Thu Nov 2 08:51:36 2023 UTC 140s gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 140s gpgv: issuer "doko@ubuntu.com" 140s gpgv: Can't check signature: No public key 140s dpkg-source: warning: cannot verify inline signature for ./pymol_2.5.0+dfsg-1build4.dsc: no acceptable signature found 141s autopkgtest [13:12:07]: testing package pymol version 2.5.0+dfsg-1build4 141s autopkgtest [13:12:07]: build not needed 144s autopkgtest [13:12:10]: test command1: preparing testbed 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 147s The following additional packages will be installed: 147s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 147s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2 147s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 147s libegl-mesa0 libegl1 libfontconfig1 libgbm1 libgfortran5 libgl1 147s libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 147s libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 147s libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libllvm17 147s libmd4c0 libmtdev1 libnetcdf19 libopengl0 libpcre2-16-0 147s libpython3.11-minimal libpython3.11-stdlib libpython3.12 libqt5core5a 147s libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 147s libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 147s libqt5xml5 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 147s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 147s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 147s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 147s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 147s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 147s libxrender1 libxshmfence1 libxxf86vm1 pymol pymol-data python3-numpy 147s python3-opengl python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 147s python3-pyqt5.sip python3.11 python3.11-minimal x11-common 147s Suggested packages: 147s cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins 147s libwacom-bin gcc gfortran python3-dev python3-pytest libgle3 python3-tk 147s python3.11-venv python3.11-doc binfmt-support 147s Recommended packages: 147s libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme 147s qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc 147s | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers 147s | vulkan-icd apbs libglut-dev 147s The following NEW packages will be installed: 147s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 147s fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data 147s libavahi-common3 libblas3 libcups2 libdouble-conversion3 libdrm-amdgpu1 147s libdrm-nouveau2 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libgbm1 147s libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa 147s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 147s libhdf5-103-1 libhdf5-hl-100 libice6 libinput-bin libinput10 libjpeg-turbo8 147s libjpeg8 liblapack3 libllvm17 libmd4c0 libmtdev1 libnetcdf19 libopengl0 147s libpcre2-16-0 libpython3.11-minimal libpython3.11-stdlib libpython3.12 147s libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 147s libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 147s libqt5widgets5 libqt5xml5 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 147s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 147s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 147s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 147s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 147s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 147s libxrender1 libxshmfence1 libxxf86vm1 pymol pymol-data python3-numpy 147s python3-opengl python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 147s python3-pyqt5.sip python3.11 python3.11-minimal x11-common 147s 0 upgraded, 102 newly installed, 0 to remove and 1 not upgraded. 147s Need to get 80.0 MB/80.0 MB of archives. 147s After this operation, 341 MB of additional disk space will be used. 147s Get:1 /tmp/autopkgtest.QsN1m0/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 147s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 148s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 148s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 148s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 148s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 148s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 148s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 148s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 148s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 148s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 148s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 148s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 148s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 148s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 148s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 148s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 148s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 148s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 148s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 148s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-server0 arm64 1.22.0-2.1 [34.0 kB] 148s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 148s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgbm1 arm64 24.0.1-1ubuntu1 [43.0 kB] 148s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 148s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-client0 arm64 1.22.0-2.1 [25.6 kB] 148s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 148s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 148s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 148s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 148s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 148s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 148s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 148s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libegl-mesa0 arm64 24.0.1-1ubuntu1 [116 kB] 148s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 148s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 148s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 149s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 149s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 149s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 149s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 149s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 149s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 149s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 149s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 149s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 149s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4 [200 kB] 149s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 149s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 149s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 149s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 149s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 149s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 149s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 149s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 149s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom-common all 2.10.0-1 [63.3 kB] 149s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom9 arm64 2.10.0-1 [23.7 kB] 149s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libinput-bin arm64 1.25.0-1 [21.9 kB] 149s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libmtdev1 arm64 1.1.6-1build4 [14.4 kB] 149s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libinput10 arm64 1.25.0-1 [129 kB] 149s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 149s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 149s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 149s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libmd4c0 arm64 0.4.8-1 [41.2 kB] 149s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 149s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 149s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 149s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5core5a arm64 5.15.12+dfsg-3ubuntu1 [1969 kB] 150s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5dbus5 arm64 5.15.12+dfsg-3ubuntu1 [224 kB] 150s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libegl1 arm64 1.7.0-1 [29.2 kB] 150s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5network5 arm64 5.15.12+dfsg-3ubuntu1 [741 kB] 150s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 150s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-icccm4 arm64 0.4.1-1.1build2 [11.0 kB] 150s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-util1 arm64 0.4.0-1build2 [11.2 kB] 150s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-image0 arm64 0.4.0-2 [11.1 kB] 150s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-keysyms1 arm64 0.4.0-1build3 [8606 B] 150s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 150s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render-util0 arm64 0.3.9-1build3 [10.2 kB] 150s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shape0 arm64 1.15-1 [6106 B] 150s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinerama0 arm64 1.15-1 [5434 B] 150s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinput0 arm64 1.15-1 [33.5 kB] 150s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xkb1 arm64 1.15-1 [31.7 kB] 150s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1 [13.6 kB] 150s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 150s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5gui5 arm64 5.15.12+dfsg-3ubuntu1 [3616 kB] 150s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5widgets5 arm64 5.15.12+dfsg-3ubuntu1 [2550 kB] 150s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5xml5 arm64 5.15.12+dfsg-3ubuntu1 [125 kB] 150s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5designer5 arm64 5.15.12-2 [2844 kB] 150s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5sql5 arm64 5.15.12+dfsg-3ubuntu1 [124 kB] 150s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5help5 arm64 5.15.12-2 [165 kB] 150s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5opengl5 arm64 5.15.12+dfsg-3ubuntu1 [148 kB] 150s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5printsupport5 arm64 5.15.12+dfsg-3ubuntu1 [209 kB] 150s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5test5 arm64 5.15.12+dfsg-3ubuntu1 [144 kB] 150s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 150s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 150s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libglu1-mesa arm64 9.0.2-1.1 [137 kB] 150s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 150s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5.sip arm64 12.13.0-1build1 [90.5 kB] 150s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5 arm64 5.15.10+dfsg-1build2 [2555 kB] 151s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5.qtopengl arm64 5.15.10+dfsg-1build2 [119 kB] 151s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 pymol-data all 2.5.0+dfsg-1build4 [1353 kB] 151s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pymol arm64 2.5.0+dfsg-1build4 [7038 kB] 151s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 pymol all 2.5.0+dfsg-1build4 [126 kB] 152s Fetched 80.0 MB in 4s (22.2 MB/s) 152s Selecting previously unselected package libpython3.11-minimal:arm64. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 152s Preparing to unpack .../000-libpython3.11-minimal_3.11.8-1_arm64.deb ... 152s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 153s Selecting previously unselected package python3.11-minimal. 153s Preparing to unpack .../001-python3.11-minimal_3.11.8-1_arm64.deb ... 153s Unpacking python3.11-minimal (3.11.8-1) ... 153s Selecting previously unselected package libpython3.11-stdlib:arm64. 153s Preparing to unpack .../002-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 153s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 153s Selecting previously unselected package python3.11. 153s Preparing to unpack .../003-python3.11_3.11.8-1_arm64.deb ... 153s Unpacking python3.11 (3.11.8-1) ... 153s Selecting previously unselected package fonts-dejavu-mono. 153s Preparing to unpack .../004-fonts-dejavu-mono_2.37-8_all.deb ... 153s Unpacking fonts-dejavu-mono (2.37-8) ... 153s Selecting previously unselected package fonts-dejavu-core. 153s Preparing to unpack .../005-fonts-dejavu-core_2.37-8_all.deb ... 153s Unpacking fonts-dejavu-core (2.37-8) ... 153s Selecting previously unselected package fontconfig-config. 153s Preparing to unpack .../006-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 153s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 153s Selecting previously unselected package libfontconfig1:arm64. 153s Preparing to unpack .../007-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 153s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 153s Selecting previously unselected package fontconfig. 153s Preparing to unpack .../008-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 153s Unpacking fontconfig (2.15.0-1ubuntu1) ... 153s Selecting previously unselected package libaec0:arm64. 153s Preparing to unpack .../009-libaec0_1.1.2-1_arm64.deb ... 153s Unpacking libaec0:arm64 (1.1.2-1) ... 153s Selecting previously unselected package libavahi-common-data:arm64. 153s Preparing to unpack .../010-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 153s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 153s Selecting previously unselected package libavahi-common3:arm64. 153s Preparing to unpack .../011-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 153s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 153s Selecting previously unselected package libavahi-client3:arm64. 153s Preparing to unpack .../012-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 153s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 153s Selecting previously unselected package libblas3:arm64. 153s Preparing to unpack .../013-libblas3_3.12.0-3_arm64.deb ... 153s Unpacking libblas3:arm64 (3.12.0-3) ... 153s Selecting previously unselected package libcups2:arm64. 153s Preparing to unpack .../014-libcups2_2.4.6-0ubuntu3_arm64.deb ... 153s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 154s Selecting previously unselected package libdouble-conversion3:arm64. 154s Preparing to unpack .../015-libdouble-conversion3_3.3.0-1_arm64.deb ... 154s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 154s Selecting previously unselected package libdrm-amdgpu1:arm64. 154s Preparing to unpack .../016-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 154s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 154s Selecting previously unselected package libdrm-nouveau2:arm64. 154s Preparing to unpack .../017-libdrm-nouveau2_2.4.120-2_arm64.deb ... 154s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 154s Selecting previously unselected package libdrm-radeon1:arm64. 154s Preparing to unpack .../018-libdrm-radeon1_2.4.120-2_arm64.deb ... 154s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 154s Selecting previously unselected package libwayland-server0:arm64. 154s Preparing to unpack .../019-libwayland-server0_1.22.0-2.1_arm64.deb ... 154s Unpacking libwayland-server0:arm64 (1.22.0-2.1) ... 154s Selecting previously unselected package libxcb-randr0:arm64. 154s Preparing to unpack .../020-libxcb-randr0_1.15-1_arm64.deb ... 154s Unpacking libxcb-randr0:arm64 (1.15-1) ... 154s Selecting previously unselected package libgbm1:arm64. 154s Preparing to unpack .../021-libgbm1_24.0.1-1ubuntu1_arm64.deb ... 154s Unpacking libgbm1:arm64 (24.0.1-1ubuntu1) ... 154s Selecting previously unselected package libglapi-mesa:arm64. 154s Preparing to unpack .../022-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 154s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 154s Selecting previously unselected package libwayland-client0:arm64. 154s Preparing to unpack .../023-libwayland-client0_1.22.0-2.1_arm64.deb ... 154s Unpacking libwayland-client0:arm64 (1.22.0-2.1) ... 154s Selecting previously unselected package libx11-xcb1:arm64. 154s Preparing to unpack .../024-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 154s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 154s Selecting previously unselected package libxcb-dri2-0:arm64. 154s Preparing to unpack .../025-libxcb-dri2-0_1.15-1_arm64.deb ... 154s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 154s Selecting previously unselected package libxcb-dri3-0:arm64. 154s Preparing to unpack .../026-libxcb-dri3-0_1.15-1_arm64.deb ... 154s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 154s Selecting previously unselected package libxcb-present0:arm64. 154s Preparing to unpack .../027-libxcb-present0_1.15-1_arm64.deb ... 154s Unpacking libxcb-present0:arm64 (1.15-1) ... 154s Selecting previously unselected package libxcb-sync1:arm64. 154s Preparing to unpack .../028-libxcb-sync1_1.15-1_arm64.deb ... 154s Unpacking libxcb-sync1:arm64 (1.15-1) ... 154s Selecting previously unselected package libxcb-xfixes0:arm64. 154s Preparing to unpack .../029-libxcb-xfixes0_1.15-1_arm64.deb ... 154s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 154s Selecting previously unselected package libxshmfence1:arm64. 154s Preparing to unpack .../030-libxshmfence1_1.3-1build4_arm64.deb ... 154s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 154s Selecting previously unselected package libegl-mesa0:arm64. 154s Preparing to unpack .../031-libegl-mesa0_24.0.1-1ubuntu1_arm64.deb ... 154s Unpacking libegl-mesa0:arm64 (24.0.1-1ubuntu1) ... 154s Selecting previously unselected package libgfortran5:arm64. 154s Preparing to unpack .../032-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 154s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 154s Selecting previously unselected package libvulkan1:arm64. 154s Preparing to unpack .../033-libvulkan1_1.3.275.0-1_arm64.deb ... 154s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 154s Selecting previously unselected package libllvm17:arm64. 154s Preparing to unpack .../034-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 154s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 155s Selecting previously unselected package libgl1-mesa-dri:arm64. 155s Preparing to unpack .../035-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 155s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 156s Selecting previously unselected package libglvnd0:arm64. 156s Preparing to unpack .../036-libglvnd0_1.7.0-1_arm64.deb ... 156s Unpacking libglvnd0:arm64 (1.7.0-1) ... 156s Selecting previously unselected package libxcb-glx0:arm64. 156s Preparing to unpack .../037-libxcb-glx0_1.15-1_arm64.deb ... 156s Unpacking libxcb-glx0:arm64 (1.15-1) ... 156s Selecting previously unselected package libxcb-shm0:arm64. 156s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 156s Unpacking libxcb-shm0:arm64 (1.15-1) ... 156s Selecting previously unselected package libxfixes3:arm64. 156s Preparing to unpack .../039-libxfixes3_1%3a6.0.0-2_arm64.deb ... 156s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 156s Selecting previously unselected package libxxf86vm1:arm64. 156s Preparing to unpack .../040-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 156s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 156s Selecting previously unselected package libglx-mesa0:arm64. 156s Preparing to unpack .../041-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 156s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 156s Selecting previously unselected package libglx0:arm64. 156s Preparing to unpack .../042-libglx0_1.7.0-1_arm64.deb ... 156s Unpacking libglx0:arm64 (1.7.0-1) ... 156s Selecting previously unselected package libgl1:arm64. 156s Preparing to unpack .../043-libgl1_1.7.0-1_arm64.deb ... 156s Unpacking libgl1:arm64 (1.7.0-1) ... 156s Selecting previously unselected package libglew2.2:arm64. 156s Preparing to unpack .../044-libglew2.2_2.2.0-4_arm64.deb ... 156s Unpacking libglew2.2:arm64 (2.2.0-4) ... 156s Selecting previously unselected package libgomp1:arm64. 156s Preparing to unpack .../045-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 156s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 156s Selecting previously unselected package libgraphite2-3:arm64. 156s Preparing to unpack .../046-libgraphite2-3_1.3.14-2_arm64.deb ... 156s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 156s Selecting previously unselected package libharfbuzz0b:arm64. 156s Preparing to unpack .../047-libharfbuzz0b_8.3.0-2_arm64.deb ... 156s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 156s Selecting previously unselected package libsz2:arm64. 157s Preparing to unpack .../048-libsz2_1.1.2-1_arm64.deb ... 157s Unpacking libsz2:arm64 (1.1.2-1) ... 157s Selecting previously unselected package libhdf5-103-1:arm64. 157s Preparing to unpack .../049-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 157s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 157s Selecting previously unselected package libhdf5-hl-100:arm64. 157s Preparing to unpack .../050-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 157s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 157s Selecting previously unselected package x11-common. 157s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu2_all.deb ... 157s Unpacking x11-common (1:7.7+23ubuntu2) ... 157s Selecting previously unselected package libice6:arm64. 157s Preparing to unpack .../052-libice6_2%3a1.0.10-1build2_arm64.deb ... 157s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 157s Selecting previously unselected package libwacom-common. 157s Preparing to unpack .../053-libwacom-common_2.10.0-1_all.deb ... 157s Unpacking libwacom-common (2.10.0-1) ... 157s Selecting previously unselected package libwacom9:arm64. 158s Preparing to unpack .../054-libwacom9_2.10.0-1_arm64.deb ... 158s Unpacking libwacom9:arm64 (2.10.0-1) ... 158s Selecting previously unselected package libinput-bin. 158s Preparing to unpack .../055-libinput-bin_1.25.0-1_arm64.deb ... 158s Unpacking libinput-bin (1.25.0-1) ... 158s Selecting previously unselected package libmtdev1:arm64. 158s Preparing to unpack .../056-libmtdev1_1.1.6-1build4_arm64.deb ... 158s Unpacking libmtdev1:arm64 (1.1.6-1build4) ... 158s Selecting previously unselected package libinput10:arm64. 158s Preparing to unpack .../057-libinput10_1.25.0-1_arm64.deb ... 158s Unpacking libinput10:arm64 (1.25.0-1) ... 158s Selecting previously unselected package libjpeg-turbo8:arm64. 158s Preparing to unpack .../058-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 158s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 158s Selecting previously unselected package libjpeg8:arm64. 158s Preparing to unpack .../059-libjpeg8_8c-2ubuntu11_arm64.deb ... 158s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 158s Selecting previously unselected package liblapack3:arm64. 159s Preparing to unpack .../060-liblapack3_3.12.0-3_arm64.deb ... 159s Unpacking liblapack3:arm64 (3.12.0-3) ... 159s Selecting previously unselected package libmd4c0:arm64. 159s Preparing to unpack .../061-libmd4c0_0.4.8-1_arm64.deb ... 159s Unpacking libmd4c0:arm64 (0.4.8-1) ... 159s Selecting previously unselected package libnetcdf19:arm64. 159s Preparing to unpack .../062-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 159s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 159s Selecting previously unselected package libpcre2-16-0:arm64. 159s Preparing to unpack .../063-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 159s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 159s Selecting previously unselected package libpython3.12:arm64. 159s Preparing to unpack .../064-libpython3.12_3.12.2-1_arm64.deb ... 159s Unpacking libpython3.12:arm64 (3.12.2-1) ... 159s Selecting previously unselected package libqt5core5a:arm64. 159s Preparing to unpack .../065-libqt5core5a_5.15.12+dfsg-3ubuntu1_arm64.deb ... 159s Unpacking libqt5core5a:arm64 (5.15.12+dfsg-3ubuntu1) ... 159s Selecting previously unselected package libqt5dbus5:arm64. 159s Preparing to unpack .../066-libqt5dbus5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 159s Unpacking libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ... 159s Selecting previously unselected package libegl1:arm64. 159s Preparing to unpack .../067-libegl1_1.7.0-1_arm64.deb ... 159s Unpacking libegl1:arm64 (1.7.0-1) ... 159s Selecting previously unselected package libqt5network5:arm64. 159s Preparing to unpack .../068-libqt5network5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 159s Unpacking libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ... 159s Selecting previously unselected package libsm6:arm64. 159s Preparing to unpack .../069-libsm6_2%3a1.2.3-1build2_arm64.deb ... 159s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 159s Selecting previously unselected package libxcb-icccm4:arm64. 159s Preparing to unpack .../070-libxcb-icccm4_0.4.1-1.1build2_arm64.deb ... 159s Unpacking libxcb-icccm4:arm64 (0.4.1-1.1build2) ... 159s Selecting previously unselected package libxcb-util1:arm64. 159s Preparing to unpack .../071-libxcb-util1_0.4.0-1build2_arm64.deb ... 159s Unpacking libxcb-util1:arm64 (0.4.0-1build2) ... 159s Selecting previously unselected package libxcb-image0:arm64. 159s Preparing to unpack .../072-libxcb-image0_0.4.0-2_arm64.deb ... 159s Unpacking libxcb-image0:arm64 (0.4.0-2) ... 159s Selecting previously unselected package libxcb-keysyms1:arm64. 159s Preparing to unpack .../073-libxcb-keysyms1_0.4.0-1build3_arm64.deb ... 159s Unpacking libxcb-keysyms1:arm64 (0.4.0-1build3) ... 159s Selecting previously unselected package libxcb-render0:arm64. 159s Preparing to unpack .../074-libxcb-render0_1.15-1_arm64.deb ... 159s Unpacking libxcb-render0:arm64 (1.15-1) ... 159s Selecting previously unselected package libxcb-render-util0:arm64. 159s Preparing to unpack .../075-libxcb-render-util0_0.3.9-1build3_arm64.deb ... 159s Unpacking libxcb-render-util0:arm64 (0.3.9-1build3) ... 159s Selecting previously unselected package libxcb-shape0:arm64. 159s Preparing to unpack .../076-libxcb-shape0_1.15-1_arm64.deb ... 159s Unpacking libxcb-shape0:arm64 (1.15-1) ... 159s Selecting previously unselected package libxcb-xinerama0:arm64. 159s Preparing to unpack .../077-libxcb-xinerama0_1.15-1_arm64.deb ... 159s Unpacking libxcb-xinerama0:arm64 (1.15-1) ... 159s Selecting previously unselected package libxcb-xinput0:arm64. 159s Preparing to unpack .../078-libxcb-xinput0_1.15-1_arm64.deb ... 159s Unpacking libxcb-xinput0:arm64 (1.15-1) ... 159s Selecting previously unselected package libxcb-xkb1:arm64. 159s Preparing to unpack .../079-libxcb-xkb1_1.15-1_arm64.deb ... 159s Unpacking libxcb-xkb1:arm64 (1.15-1) ... 160s Selecting previously unselected package libxkbcommon-x11-0:arm64. 160s Preparing to unpack .../080-libxkbcommon-x11-0_1.6.0-1_arm64.deb ... 160s Unpacking libxkbcommon-x11-0:arm64 (1.6.0-1) ... 160s Selecting previously unselected package libxrender1:arm64. 160s Preparing to unpack .../081-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 160s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 160s Selecting previously unselected package libqt5gui5:arm64. 160s Preparing to unpack .../082-libqt5gui5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 160s Unpacking libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ... 160s Selecting previously unselected package libqt5widgets5:arm64. 160s Preparing to unpack .../083-libqt5widgets5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 160s Unpacking libqt5widgets5:arm64 (5.15.12+dfsg-3ubuntu1) ... 160s Selecting previously unselected package libqt5xml5:arm64. 160s Preparing to unpack .../084-libqt5xml5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 160s Unpacking libqt5xml5:arm64 (5.15.12+dfsg-3ubuntu1) ... 160s Selecting previously unselected package libqt5designer5:arm64. 160s Preparing to unpack .../085-libqt5designer5_5.15.12-2_arm64.deb ... 160s Unpacking libqt5designer5:arm64 (5.15.12-2) ... 160s Selecting previously unselected package libqt5sql5:arm64. 160s Preparing to unpack .../086-libqt5sql5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 160s Unpacking libqt5sql5:arm64 (5.15.12+dfsg-3ubuntu1) ... 160s Selecting previously unselected package libqt5help5:arm64. 160s Preparing to unpack .../087-libqt5help5_5.15.12-2_arm64.deb ... 160s Unpacking libqt5help5:arm64 (5.15.12-2) ... 160s Selecting previously unselected package libqt5opengl5:arm64. 160s Preparing to unpack .../088-libqt5opengl5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 160s Unpacking libqt5opengl5:arm64 (5.15.12+dfsg-3ubuntu1) ... 160s Selecting previously unselected package libqt5printsupport5:arm64. 160s Preparing to unpack .../089-libqt5printsupport5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 160s Unpacking libqt5printsupport5:arm64 (5.15.12+dfsg-3ubuntu1) ... 160s Selecting previously unselected package libqt5test5:arm64. 160s Preparing to unpack .../090-libqt5test5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 160s Unpacking libqt5test5:arm64 (5.15.12+dfsg-3ubuntu1) ... 160s Selecting previously unselected package python3-numpy. 160s Preparing to unpack .../091-python3-numpy_1%3a1.24.2-2_arm64.deb ... 160s Unpacking python3-numpy (1:1.24.2-2) ... 160s Selecting previously unselected package libopengl0:arm64. 160s Preparing to unpack .../092-libopengl0_1.7.0-1_arm64.deb ... 160s Unpacking libopengl0:arm64 (1.7.0-1) ... 160s Selecting previously unselected package libglu1-mesa:arm64. 160s Preparing to unpack .../093-libglu1-mesa_9.0.2-1.1_arm64.deb ... 160s Unpacking libglu1-mesa:arm64 (9.0.2-1.1) ... 160s Selecting previously unselected package python3-opengl. 160s Preparing to unpack .../094-python3-opengl_3.1.7+dfsg-1_all.deb ... 160s Unpacking python3-opengl (3.1.7+dfsg-1) ... 161s Selecting previously unselected package python3-pyqt5.sip. 161s Preparing to unpack .../095-python3-pyqt5.sip_12.13.0-1build1_arm64.deb ... 161s Unpacking python3-pyqt5.sip (12.13.0-1build1) ... 161s Selecting previously unselected package python3-pyqt5. 161s Preparing to unpack .../096-python3-pyqt5_5.15.10+dfsg-1build2_arm64.deb ... 161s Unpacking python3-pyqt5 (5.15.10+dfsg-1build2) ... 161s Selecting previously unselected package python3-pyqt5.qtopengl. 161s Preparing to unpack .../097-python3-pyqt5.qtopengl_5.15.10+dfsg-1build2_arm64.deb ... 161s Unpacking python3-pyqt5.qtopengl (5.15.10+dfsg-1build2) ... 161s Selecting previously unselected package pymol-data. 161s Preparing to unpack .../098-pymol-data_2.5.0+dfsg-1build4_all.deb ... 161s Unpacking pymol-data (2.5.0+dfsg-1build4) ... 161s Selecting previously unselected package python3-pymol. 161s Preparing to unpack .../099-python3-pymol_2.5.0+dfsg-1build4_arm64.deb ... 161s Unpacking python3-pymol (2.5.0+dfsg-1build4) ... 161s Selecting previously unselected package pymol. 161s Preparing to unpack .../100-pymol_2.5.0+dfsg-1build4_all.deb ... 161s Unpacking pymol (2.5.0+dfsg-1build4) ... 161s Selecting previously unselected package autopkgtest-satdep. 162s Preparing to unpack .../101-1-autopkgtest-satdep.deb ... 162s Unpacking autopkgtest-satdep (0) ... 162s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 162s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 162s Setting up libwayland-server0:arm64 (1.22.0-2.1) ... 162s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 162s Setting up libdouble-conversion3:arm64 (3.3.0-1) ... 162s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 162s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 162s Setting up libxcb-xinput0:arm64 (1.15-1) ... 162s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 162s Setting up libxcb-render0:arm64 (1.15-1) ... 162s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 162s Setting up libglvnd0:arm64 (1.7.0-1) ... 162s Setting up libxcb-glx0:arm64 (1.15-1) ... 162s Setting up libxcb-keysyms1:arm64 (0.4.0-1build3) ... 162s Setting up libxcb-shape0:arm64 (1.15-1) ... 162s Setting up x11-common (1:7.7+23ubuntu2) ... 162s Setting up libxcb-render-util0:arm64 (0.3.9-1build3) ... 162s Setting up libxcb-shm0:arm64 (1.15-1) ... 162s Setting up libxcb-icccm4:arm64 (0.4.1-1.1build2) ... 162s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 162s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 162s Setting up libaec0:arm64 (1.1.2-1) ... 162s Setting up libopengl0:arm64 (1.7.0-1) ... 162s Setting up libxcb-util1:arm64 (0.4.0-1build2) ... 162s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 162s Setting up libxcb-xkb1:arm64 (1.15-1) ... 162s Setting up libxcb-image0:arm64 (0.4.0-2) ... 162s Setting up libxcb-present0:arm64 (1.15-1) ... 162s Setting up libblas3:arm64 (3.12.0-3) ... 162s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 162s Setting up libxcb-xinerama0:arm64 (1.15-1) ... 162s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 162s Setting up libxcb-sync1:arm64 (1.15-1) ... 162s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 162s Setting up pymol-data (2.5.0+dfsg-1build4) ... 162s Setting up libxkbcommon-x11-0:arm64 (1.6.0-1) ... 162s Setting up fonts-dejavu-mono (2.37-8) ... 162s Setting up fonts-dejavu-core (2.37-8) ... 162s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 162s Setting up libqt5core5a:arm64 (5.15.12+dfsg-3ubuntu1) ... 162s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 162s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 162s Setting up libmtdev1:arm64 (1.1.6-1build4) ... 162s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 162s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 162s Setting up python3-pyqt5.sip (12.13.0-1build1) ... 162s Setting up libxshmfence1:arm64 (1.3-1build4) ... 162s Setting up libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ... 162s Setting up libxcb-randr0:arm64 (1.15-1) ... 162s Setting up libmd4c0:arm64 (0.4.8-1) ... 162s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 162s Setting up libglu1-mesa:arm64 (9.0.2-1.1) ... 162s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 162s Setting up libqt5test5:arm64 (5.15.12+dfsg-3ubuntu1) ... 162s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 162s Setting up libpython3.12:arm64 (3.12.2-1) ... 162s Setting up libsz2:arm64 (1.1.2-1) ... 162s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 162s Setting up libwacom-common (2.10.0-1) ... 162s Setting up libwayland-client0:arm64 (1.22.0-2.1) ... 162s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 162s Setting up python3.11-minimal (3.11.8-1) ... 163s Setting up libice6:arm64 (2:1.0.10-1build2) ... 163s Setting up liblapack3:arm64 (3.12.0-3) ... 163s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 163s Setting up libgbm1:arm64 (24.0.1-1ubuntu1) ... 163s Setting up libwacom9:arm64 (2.10.0-1) ... 163s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 163s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 163s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 163s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 163s Setting up libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ... 163s Setting up libinput-bin (1.25.0-1) ... 163s Setting up libqt5sql5:arm64 (5.15.12+dfsg-3ubuntu1) ... 163s Setting up libqt5xml5:arm64 (5.15.12+dfsg-3ubuntu1) ... 163s Setting up libegl-mesa0:arm64 (24.0.1-1ubuntu1) ... 163s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 163s Setting up libegl1:arm64 (1.7.0-1) ... 163s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 163s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 163s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 163s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 163s Setting up libinput10:arm64 (1.25.0-1) ... 163s Setting up python3.11 (3.11.8-1) ... 164s Setting up fontconfig (2.15.0-1ubuntu1) ... 166s Regenerating fonts cache... done. 166s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 166s Setting up libglx0:arm64 (1.7.0-1) ... 166s Setting up libgl1:arm64 (1.7.0-1) ... 166s Setting up python3-numpy (1:1.24.2-2) ... 168s Setting up libglew2.2:arm64 (2.2.0-4) ... 168s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 168s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 168s Setting up libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ... 168s Setting up libqt5widgets5:arm64 (5.15.12+dfsg-3ubuntu1) ... 168s Setting up python3-opengl (3.1.7+dfsg-1) ... 168s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 168s '''OpenGL extension AMD.vertex_shader_tessellator 169s Setting up libqt5help5:arm64 (5.15.12-2) ... 169s Setting up libqt5printsupport5:arm64 (5.15.12+dfsg-3ubuntu1) ... 170s Setting up libqt5opengl5:arm64 (5.15.12+dfsg-3ubuntu1) ... 170s Setting up libqt5designer5:arm64 (5.15.12-2) ... 170s Setting up python3-pyqt5 (5.15.10+dfsg-1build2) ... 170s Setting up python3-pyqt5.qtopengl (5.15.10+dfsg-1build2) ... 170s Setting up python3-pymol (2.5.0+dfsg-1build4) ... 170s /usr/lib/python3/dist-packages/chempy/sdf.py:23: SyntaxWarning: invalid escape sequence '\s' 170s getkee = re.compile("^>\s+<([^>]*)>") 170s /usr/lib/python3/dist-packages/chempy/sdf.py:24: SyntaxWarning: invalid escape sequence '\s' 170s gettag = re.compile("^>\s+<[^>]*>\s+\((.*)\)") 170s /usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py:849: SyntaxWarning: invalid escape sequence '\.' 170s g = re.search("(.*)(\..*)$", save_file) 170s /usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py:889: SyntaxWarning: invalid escape sequence '\.' 170s if re.search("\.pym*$|\.PYM*$",ofile): 170s /usr/lib/python3/dist-packages/pymol/internal.py:252: SyntaxWarning: invalid escape sequence '\.' 170s if re.search("[0-9]*\.png$",fname): # remove numbering, etc. 170s /usr/lib/python3/dist-packages/pymol/internal.py:253: SyntaxWarning: invalid escape sequence '\.' 170s fname = re.sub("[0-9]*\.png$","",fname) 170s /usr/lib/python3/dist-packages/pymol/internal.py:254: SyntaxWarning: invalid escape sequence '\.' 170s if re.search("[0-9]*\.ppm$",fname): 170s /usr/lib/python3/dist-packages/pymol/internal.py:257: SyntaxWarning: invalid escape sequence '\.' 170s fname = re.sub("[0-9]*\.ppm$","",fname) 170s /usr/lib/python3/dist-packages/pymol/movie.py:818: SyntaxWarning: invalid escape sequence '\W' 170s '''Return full path to executable or None. 170s /usr/lib/python3/dist-packages/pymol/moving.py:733: SyntaxWarning: invalid escape sequence '\s' 170s input = re.sub("\s"," ",specification) 170s /usr/lib/python3/dist-packages/pymol/parser.py:48: SyntaxWarning: invalid escape sequence '\[' 170s remove_lists_re = re.compile("\[[^\]]*\]") 170s /usr/lib/python3/dist-packages/pymol/parser.py:408: SyntaxWarning: invalid escape sequence '\.' 170s if re.search("\.py$|\.pym$",path) is not None: 170s /usr/lib/python3/dist-packages/pymol/plugins/installation.py:23: SyntaxWarning: invalid escape sequence '\p' 170s ''' 170s /usr/lib/python3/dist-packages/pymol/viewing.py:899: SyntaxWarning: invalid escape sequence '\.' 170s re_pat = re.compile("[0-9]+\.") 170s /usr/lib/python3/dist-packages/pymol/viewing.py:912: SyntaxWarning: invalid escape sequence '\.' 170s new_file = re.sub("\.pse$",".psw",new_file,re.I) 170s /usr/lib/python3/dist-packages/pymol/viewing.py:914: SyntaxWarning: invalid escape sequence '\.' 170s new_file = re.sub("\.psw$",".pse",new_file,re.I) 170s /usr/lib/python3/dist-packages/pymol/wizard/pseudoatom.py:13: SyntaxWarning: invalid escape sequence '\8' 170s self.prefix = 'Label text: \888' 170s Setting up pymol (2.5.0+dfsg-1build4) ... 170s Setting up autopkgtest-satdep (0) ... 170s Processing triggers for systemd (255.2-3ubuntu2) ... 170s Processing triggers for man-db (2.12.0-3) ... 171s Processing triggers for udev (255.2-3ubuntu2) ... 171s Processing triggers for libc-bin (2.39-0ubuntu2) ... 179s (Reading database ... 81516 files and directories currently installed.) 179s Removing autopkgtest-satdep (0) ... 179s autopkgtest [13:12:45]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 179s autopkgtest [13:12:45]: test command1: [----------------------- 179s Search pymol scripts in /tmp/autopkgtest.QsN1m0/build.2dp/src/examples... 179s Processing new directory /tmp/autopkgtest.QsN1m0/build.2dp/src/examples 179s Run 'pymol -c /tmp/autopkgtest.QsN1m0/build.2dp/src/examples/chempy/generate_amber.py'... 180s Traceback (most recent call last): 180s File "", line 189, in _run_module_as_main 180s File "", line 112, in _get_module_details 180s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 180s from imp import find_module 180s ModuleNotFoundError: No module named 'imp' 180s autopkgtest [13:12:46]: test command1: -----------------------] 180s command1 FAIL non-zero exit status 1 180s autopkgtest [13:12:46]: test command1: - - - - - - - - - - results - - - - - - - - - - 181s autopkgtest [13:12:47]: test command2: preparing testbed 186s Reading package lists... 187s Building dependency tree... 187s Reading state information... 187s Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 188s The following NEW packages will be installed: 188s autopkgtest-satdep 188s 0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded. 188s Need to get 0 B/700 B of archives. 188s After this operation, 0 B of additional disk space will be used. 188s Get:1 /tmp/autopkgtest.QsN1m0/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 189s Selecting previously unselected package autopkgtest-satdep. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81516 files and directories currently installed.) 189s Preparing to unpack .../2-autopkgtest-satdep.deb ... 189s Unpacking autopkgtest-satdep (0) ... 189s Setting up autopkgtest-satdep (0) ... 191s (Reading database ... 81516 files and directories currently installed.) 191s Removing autopkgtest-satdep (0) ... 192s autopkgtest [13:12:58]: test command2: sh debian/tests/call-pymol-scripts data/demo 192s autopkgtest [13:12:58]: test command2: [----------------------- 192s Search pymol scripts in /tmp/autopkgtest.QsN1m0/build.2dp/src/data/demo... 192s Processing new directory /tmp/autopkgtest.QsN1m0/build.2dp/src/data/demo 192s Run 'pymol -c /tmp/autopkgtest.QsN1m0/build.2dp/src/data/demo/cgo03.py'... 192s Traceback (most recent call last): 192s File "", line 189, in _run_module_as_main 192s File "", line 112, in _get_module_details 192s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 192s from imp import find_module 192s ModuleNotFoundError: No module named 'imp' 193s autopkgtest [13:12:59]: test command2: -----------------------] 193s autopkgtest [13:12:59]: test command2: - - - - - - - - - - results - - - - - - - - - - 193s command2 FAIL non-zero exit status 1 193s autopkgtest [13:12:59]: test command3: preparing testbed 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 195s Starting pkgProblemResolver with broken count: 0 195s Starting 2 pkgProblemResolver with broken count: 0 195s Done 196s The following NEW packages will be installed: 196s autopkgtest-satdep 196s 0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded. 196s Need to get 0 B/704 B of archives. 196s After this operation, 0 B of additional disk space will be used. 196s Get:1 /tmp/autopkgtest.QsN1m0/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 197s Selecting previously unselected package autopkgtest-satdep. 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81516 files and directories currently installed.) 197s Preparing to unpack .../3-autopkgtest-satdep.deb ... 197s Unpacking autopkgtest-satdep (0) ... 197s Setting up autopkgtest-satdep (0) ... 199s (Reading database ... 81516 files and directories currently installed.) 199s Removing autopkgtest-satdep (0) ... 200s autopkgtest [13:13:06]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 200s autopkgtest [13:13:06]: test command3: [----------------------- 200s Search pymol scripts in /usr/share/pymol/examples... 200s Processing new directory /usr/share/pymol/examples 200s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 200s Traceback (most recent call last): 200s File "", line 189, in _run_module_as_main 200s File "", line 112, in _get_module_details 200s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 200s from imp import find_module 200s ModuleNotFoundError: No module named 'imp' 201s autopkgtest [13:13:07]: test command3: -----------------------] 201s command3 FAIL non-zero exit status 1 201s autopkgtest [13:13:07]: test command3: - - - - - - - - - - results - - - - - - - - - - 201s autopkgtest [13:13:07]: test command4: preparing testbed 204s Reading package lists... 204s Building dependency tree... 204s Reading state information... 204s Starting pkgProblemResolver with broken count: 0 204s Starting 2 pkgProblemResolver with broken count: 0 204s Done 205s The following NEW packages will be installed: 205s autopkgtest-satdep 205s 0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded. 205s Need to get 0 B/704 B of archives. 205s After this operation, 0 B of additional disk space will be used. 205s Get:1 /tmp/autopkgtest.QsN1m0/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 206s Selecting previously unselected package autopkgtest-satdep. 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81516 files and directories currently installed.) 206s Preparing to unpack .../4-autopkgtest-satdep.deb ... 206s Unpacking autopkgtest-satdep (0) ... 206s Setting up autopkgtest-satdep (0) ... 209s (Reading database ... 81516 files and directories currently installed.) 209s Removing autopkgtest-satdep (0) ... 210s autopkgtest [13:13:16]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 210s autopkgtest [13:13:16]: test command4: [----------------------- 210s Search pymol scripts in /usr/share/pymol/examples/cookbook... 210s Processing new directory /usr/share/pymol/examples/cookbook 210s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 210s Traceback (most recent call last): 210s File "", line 189, in _run_module_as_main 210s File "", line 112, in _get_module_details 210s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 210s from imp import find_module 210s ModuleNotFoundError: No module named 'imp' 211s autopkgtest [13:13:17]: test command4: -----------------------] 211s autopkgtest [13:13:17]: test command4: - - - - - - - - - - results - - - - - - - - - - 211s command4 FAIL non-zero exit status 1 211s autopkgtest [13:13:17]: test command5: preparing testbed 213s Reading package lists... 213s Building dependency tree... 213s Reading state information... 214s Starting pkgProblemResolver with broken count: 0 214s Starting 2 pkgProblemResolver with broken count: 0 214s Done 214s The following NEW packages will be installed: 214s autopkgtest-satdep 214s 0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded. 214s Need to get 0 B/704 B of archives. 214s After this operation, 0 B of additional disk space will be used. 214s Get:1 /tmp/autopkgtest.QsN1m0/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 215s Selecting previously unselected package autopkgtest-satdep. 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81516 files and directories currently installed.) 215s Preparing to unpack .../5-autopkgtest-satdep.deb ... 215s Unpacking autopkgtest-satdep (0) ... 215s Setting up autopkgtest-satdep (0) ... 217s (Reading database ... 81516 files and directories currently installed.) 217s Removing autopkgtest-satdep (0) ... 218s autopkgtest [13:13:24]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 218s autopkgtest [13:13:24]: test command5: [----------------------- 218s Traceback (most recent call last): 218s File "", line 189, in _run_module_as_main 218s File "", line 112, in _get_module_details 218s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 218s from imp import find_module 218s ModuleNotFoundError: No module named 'imp' 218s Error in sys.excepthook: 218s Traceback (most recent call last): 218s File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 228, in partial_apport_excepthook 218s return apport_excepthook(binary, exc_type, exc_obj, exc_tb) 218s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 218s File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 114, in apport_excepthook 218s report["ExecutableTimestamp"] = str(int(os.stat(binary).st_mtime)) 218s ^^^^^^^^^^^^^^^ 218s FileNotFoundError: [Errno 2] No such file or directory: '/usr/share/pymol/examples/devel/-m' 218s 218s Original exception was: 218s Traceback (most recent call last): 218s File "", line 189, in _run_module_as_main 218s File "", line 112, in _get_module_details 218s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 218s from imp import find_module 218s ModuleNotFoundError: No module named 'imp' 219s autopkgtest [13:13:25]: test command5: -----------------------] 219s autopkgtest [13:13:25]: test command5: - - - - - - - - - - results - - - - - - - - - - 219s command5 FAIL non-zero exit status 1 220s autopkgtest [13:13:26]: @@@@@@@@@@@@@@@@@@@@ summary 220s command1 FAIL non-zero exit status 1 220s command2 FAIL non-zero exit status 1 220s command3 FAIL non-zero exit status 1 220s command4 FAIL non-zero exit status 1 220s command5 FAIL non-zero exit status 1 238s Creating nova instance adt-noble-arm64-pymol-20240316-130946-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...