0s autopkgtest [13:29:49]: starting date and time: 2024-03-15 13:29:49+0000 0s autopkgtest [13:29:49]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:29:49]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3yqgqdsj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:pyqt5,src:db5.3,src:glib2.0,src:libpng1.6,src:mtdev,src:openssl,src:python3.12,src:qtbase-opensource-src,src:readline,src:wp2latex --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pyqt5/5.15.10+dfsg-1build4 db5.3/5.3.28+dfsg2-5build1 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 mtdev/1.1.6-1.1 openssl/3.0.13-0ubuntu1 python3.12/3.12.2-4build2 qtbase-opensource-src/5.15.12+dfsg-3ubuntu5 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-4.secgroup --name adt-noble-arm64-pymol-20240315-132949-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 104s autopkgtest [13:31:33]: testbed dpkg architecture: arm64 104s autopkgtest [13:31:33]: testbed apt version: 2.7.12 104s autopkgtest [13:31:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 104s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 105s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [49.0 kB] 106s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [453 kB] 106s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3615 kB] 106s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 106s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [611 kB] 106s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 106s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 106s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 106s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3815 kB] 107s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 107s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [53.5 kB] 107s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 108s Fetched 8750 kB in 3s (3187 kB/s) 108s Reading package lists... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s Calculating upgrade... 112s The following packages will be REMOVED: 112s libglib2.0-0 libreadline8 libssl3 112s The following NEW packages will be installed: 112s libglib2.0-0t64 libreadline8t64 libssl3t64 xdg-user-dirs 112s The following packages have been kept back: 112s libpython3.12-minimal libpython3.12-stdlib python3.12 python3.12-minimal 112s The following packages will be upgraded: 112s gir1.2-glib-2.0 libglib2.0-data openssl readline-common 113s 4 upgraded, 4 newly installed, 3 to remove and 4 not upgraded. 113s Need to get 4737 kB of archives. 113s After this operation, 279 kB of additional disk space will be used. 113s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 113s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 113s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 113s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 113s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 113s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 113s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 114s Fetched 4737 kB in 1s (6433 kB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 114s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 114s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 114s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 114s udisks2 depends on libglib2.0-0 (>= 2.77.0). 114s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 114s python3-gi depends on libglib2.0-0 (>= 2.77.0). 114s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 114s netplan.io depends on libglib2.0-0 (>= 2.70.0). 114s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 114s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 114s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 114s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 114s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 114s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 114s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 114s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 114s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 114s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 114s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 114s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 114s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 114s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 114s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 114s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 114s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 114s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 114s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 114s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 114s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 114s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 114s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 114s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 114s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 114s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 114s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 114s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 114s fwupd depends on libglib2.0-0 (>= 2.79.0). 114s bolt depends on libglib2.0-0 (>= 2.56.0). 114s 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 114s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 114s Selecting previously unselected package libglib2.0-0t64:arm64. 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 114s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 114s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 114s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 114s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 114s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 114s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 114s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 114s parted depends on libreadline8 (>= 6.0). 114s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 114s gpgsm depends on libreadline8 (>= 6.0). 114s gpgconf depends on libreadline8 (>= 6.0). 114s gpg depends on libreadline8 (>= 6.0). 114s gawk depends on libreadline8 (>= 6.0). 114s fdisk depends on libreadline8 (>= 6.0). 114s 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 114s Removing libreadline8:arm64 (8.2-3) ... 114s Selecting previously unselected package libreadline8t64:arm64. 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74746 files and directories currently installed.) 114s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 114s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 114s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 114s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 114s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 114s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 114s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 114s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 115s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 115s wget depends on libssl3 (>= 3.0.0). 115s u-boot-tools depends on libssl3 (>= 3.0.0). 115s tnftp depends on libssl3 (>= 3.0.0). 115s tcpdump depends on libssl3 (>= 3.0.0). 115s systemd-resolved depends on libssl3 (>= 3.0.0). 115s systemd depends on libssl3 (>= 3.0.0). 115s sudo depends on libssl3 (>= 3.0.0). 115s sbsigntool depends on libssl3 (>= 3.0.0). 115s rsync depends on libssl3 (>= 3.0.0). 115s python3-cryptography depends on libssl3 (>= 3.0.0). 115s openssh-server depends on libssl3 (>= 3.0.10). 115s openssh-client depends on libssl3 (>= 3.0.10). 115s mtd-utils depends on libssl3 (>= 3.0.0). 115s mokutil depends on libssl3 (>= 3.0.0). 115s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 115s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 115s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 115s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 115s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 115s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 115s libnvme1 depends on libssl3 (>= 3.0.0). 115s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 115s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 115s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 115s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 115s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 115s kmod depends on libssl3 (>= 3.0.0). 115s dhcpcd-base depends on libssl3 (>= 3.0.0). 115s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 115s 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 115s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 115s Selecting previously unselected package libssl3t64:arm64. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 115s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 115s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 115s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 115s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 115s Selecting previously unselected package xdg-user-dirs. 115s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 115s Unpacking xdg-user-dirs (0.18-1) ... 115s Setting up xdg-user-dirs (0.18-1) ... 115s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 115s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 115s No schema files found: doing nothing. 115s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 115s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 115s Setting up openssl (3.0.13-0ubuntu1) ... 115s Setting up readline-common (8.2-3.1) ... 115s Setting up libreadline8t64:arm64 (8.2-3.1) ... 115s Processing triggers for libc-bin (2.39-0ubuntu2) ... 115s Processing triggers for man-db (2.12.0-3) ... 116s Processing triggers for install-info (7.1-3) ... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded. 119s sh: Attempting to set up Debian/Ubuntu apt sources automatically 119s sh: Distribution appears to be Ubuntu 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s eatmydata is already the newest version (131-1). 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s dbus is already the newest version (1.14.10-4ubuntu1). 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s rng-tools-debian is already the newest version (2.4). 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s The following packages will be REMOVED: 123s cloud-init* python3-configobj* python3-debconf* 123s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 123s After this operation, 3252 kB disk space will be freed. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74782 files and directories currently installed.) 123s Removing cloud-init (24.1.1-0ubuntu1) ... 124s Removing python3-configobj (5.0.8-3) ... 124s Removing python3-debconf (1.5.86) ... 124s Processing triggers for man-db (2.12.0-3) ... 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74393 files and directories currently installed.) 124s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 125s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 125s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 125s invoke-rc.d: policy-rc.d denied execution of try-restart. 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s linux-generic is already the newest version (6.8.0-11.11+1). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 127s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 127s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 129s Reading package lists... 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Calculating upgrade... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s autopkgtest [13:32:01]: rebooting testbed after setup commands that affected boot 161s autopkgtest [13:32:30]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 165s autopkgtest [13:32:34]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 171s Get:1 http://ftpmaster.internal/ubuntu noble/universe pymol 2.5.0+dfsg-1build4 (dsc) [2317 B] 171s Get:2 http://ftpmaster.internal/ubuntu noble/universe pymol 2.5.0+dfsg-1build4 (tar) [6897 kB] 171s Get:3 http://ftpmaster.internal/ubuntu noble/universe pymol 2.5.0+dfsg-1build4 (diff) [57.4 kB] 172s gpgv: Signature made Thu Nov 2 08:51:36 2023 UTC 172s gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 172s gpgv: issuer "doko@ubuntu.com" 172s gpgv: Can't check signature: No public key 172s dpkg-source: warning: cannot verify inline signature for ./pymol_2.5.0+dfsg-1build4.dsc: no acceptable signature found 173s autopkgtest [13:32:42]: testing package pymol version 2.5.0+dfsg-1build4 173s autopkgtest [13:32:42]: build not needed 175s autopkgtest [13:32:44]: test command1: preparing testbed 178s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 180s The following additional packages will be installed: 180s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 180s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2 180s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 180s libegl-mesa0 libegl1 libfontconfig1 libgbm1 libgfortran5 libgl1 180s libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 180s libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 180s libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libllvm17 180s libmd4c0 libmtdev1 libnetcdf19 libopengl0 libpcre2-16-0 180s libpython3.11-minimal libpython3.11-stdlib libpython3.12 libqt5core5a 180s libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 180s libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 180s libqt5xml5 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 180s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 180s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 180s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 180s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 180s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 180s libxrender1 libxshmfence1 libxxf86vm1 pymol pymol-data python3-numpy 180s python3-opengl python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 180s python3-pyqt5.sip python3.11 python3.11-minimal x11-common 180s Suggested packages: 180s cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins 180s libwacom-bin gcc gfortran python3-dev python3-pytest libgle3 python3-tk 180s python3.11-venv python3.11-doc binfmt-support 180s Recommended packages: 180s libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme 180s qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc 180s | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers 180s | vulkan-icd apbs libglut-dev 181s The following NEW packages will be installed: 181s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 181s fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data 181s libavahi-common3 libblas3 libcups2 libdouble-conversion3 libdrm-amdgpu1 181s libdrm-nouveau2 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libgbm1 181s libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa 181s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 181s libhdf5-103-1 libhdf5-hl-100 libice6 libinput-bin libinput10 libjpeg-turbo8 181s libjpeg8 liblapack3 libllvm17 libmd4c0 libmtdev1 libnetcdf19 libopengl0 181s libpcre2-16-0 libpython3.11-minimal libpython3.11-stdlib libpython3.12 181s libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 181s libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 181s libqt5widgets5 libqt5xml5 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 181s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 181s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 181s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 181s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 181s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 181s libxrender1 libxshmfence1 libxxf86vm1 pymol pymol-data python3-numpy 181s python3-opengl python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 181s python3-pyqt5.sip python3.11 python3.11-minimal x11-common 181s 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. 181s Need to get 80.0 MB/80.0 MB of archives. 181s After this operation, 341 MB of additional disk space will be used. 181s Get:1 /tmp/autopkgtest.BjRSXY/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 181s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 181s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 182s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 182s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 182s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 182s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 182s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 182s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 182s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 182s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 182s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 182s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 182s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 182s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 182s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 182s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 182s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 182s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 182s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 182s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-server0 arm64 1.22.0-2.1 [34.0 kB] 182s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 182s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgbm1 arm64 24.0.1-1ubuntu1 [43.0 kB] 182s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 182s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-client0 arm64 1.22.0-2.1 [25.6 kB] 182s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 182s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 182s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 182s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 182s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 182s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 182s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 182s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libegl-mesa0 arm64 24.0.1-1ubuntu1 [116 kB] 182s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 182s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 182s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 183s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 183s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 183s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 183s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 183s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 183s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 183s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 183s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 183s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 183s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4 [200 kB] 183s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 183s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 183s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 183s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 183s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 183s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 183s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 183s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 183s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom-common all 2.10.0-1 [63.3 kB] 183s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom9 arm64 2.10.0-1 [23.7 kB] 183s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libinput-bin arm64 1.25.0-1 [21.9 kB] 183s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libmtdev1 arm64 1.1.6-1build4 [14.4 kB] 183s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libinput10 arm64 1.25.0-1 [129 kB] 183s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 183s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 183s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 183s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libmd4c0 arm64 0.4.8-1 [41.2 kB] 183s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 183s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 183s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 183s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5core5a arm64 5.15.12+dfsg-3ubuntu1 [1969 kB] 183s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5dbus5 arm64 5.15.12+dfsg-3ubuntu1 [224 kB] 183s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libegl1 arm64 1.7.0-1 [29.2 kB] 183s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5network5 arm64 5.15.12+dfsg-3ubuntu1 [741 kB] 183s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 183s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-icccm4 arm64 0.4.1-1.1build2 [11.0 kB] 183s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-util1 arm64 0.4.0-1build2 [11.2 kB] 183s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-image0 arm64 0.4.0-2 [11.1 kB] 183s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-keysyms1 arm64 0.4.0-1build3 [8606 B] 183s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 183s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render-util0 arm64 0.3.9-1build3 [10.2 kB] 183s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shape0 arm64 1.15-1 [6106 B] 183s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinerama0 arm64 1.15-1 [5434 B] 183s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinput0 arm64 1.15-1 [33.5 kB] 183s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xkb1 arm64 1.15-1 [31.7 kB] 183s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1 [13.6 kB] 183s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 183s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5gui5 arm64 5.15.12+dfsg-3ubuntu1 [3616 kB] 183s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5widgets5 arm64 5.15.12+dfsg-3ubuntu1 [2550 kB] 183s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5xml5 arm64 5.15.12+dfsg-3ubuntu1 [125 kB] 183s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5designer5 arm64 5.15.12-2 [2844 kB] 183s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5sql5 arm64 5.15.12+dfsg-3ubuntu1 [124 kB] 183s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5help5 arm64 5.15.12-2 [165 kB] 183s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5opengl5 arm64 5.15.12+dfsg-3ubuntu1 [148 kB] 183s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5printsupport5 arm64 5.15.12+dfsg-3ubuntu1 [209 kB] 183s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5test5 arm64 5.15.12+dfsg-3ubuntu1 [144 kB] 183s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 184s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 184s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libglu1-mesa arm64 9.0.2-1.1 [137 kB] 184s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 184s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5.sip arm64 12.13.0-1build1 [90.5 kB] 184s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5 arm64 5.15.10+dfsg-1build2 [2555 kB] 184s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyqt5.qtopengl arm64 5.15.10+dfsg-1build2 [119 kB] 184s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 pymol-data all 2.5.0+dfsg-1build4 [1353 kB] 184s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pymol arm64 2.5.0+dfsg-1build4 [7038 kB] 184s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 pymol all 2.5.0+dfsg-1build4 [126 kB] 185s Fetched 80.0 MB in 3s (25.7 MB/s) 185s Selecting previously unselected package libpython3.11-minimal:arm64. 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74338 files and directories currently installed.) 185s Preparing to unpack .../000-libpython3.11-minimal_3.11.8-1_arm64.deb ... 185s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 185s Selecting previously unselected package python3.11-minimal. 185s Preparing to unpack .../001-python3.11-minimal_3.11.8-1_arm64.deb ... 185s Unpacking python3.11-minimal (3.11.8-1) ... 185s Selecting previously unselected package libpython3.11-stdlib:arm64. 185s Preparing to unpack .../002-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 185s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 186s Selecting previously unselected package python3.11. 186s Preparing to unpack .../003-python3.11_3.11.8-1_arm64.deb ... 186s Unpacking python3.11 (3.11.8-1) ... 186s Selecting previously unselected package fonts-dejavu-mono. 186s Preparing to unpack .../004-fonts-dejavu-mono_2.37-8_all.deb ... 186s Unpacking fonts-dejavu-mono (2.37-8) ... 186s Selecting previously unselected package fonts-dejavu-core. 186s Preparing to unpack .../005-fonts-dejavu-core_2.37-8_all.deb ... 186s Unpacking fonts-dejavu-core (2.37-8) ... 186s Selecting previously unselected package fontconfig-config. 186s Preparing to unpack .../006-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 186s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 187s Selecting previously unselected package libfontconfig1:arm64. 187s Preparing to unpack .../007-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 187s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 187s Selecting previously unselected package fontconfig. 187s Preparing to unpack .../008-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 187s Unpacking fontconfig (2.15.0-1ubuntu1) ... 187s Selecting previously unselected package libaec0:arm64. 187s Preparing to unpack .../009-libaec0_1.1.2-1_arm64.deb ... 187s Unpacking libaec0:arm64 (1.1.2-1) ... 187s Selecting previously unselected package libavahi-common-data:arm64. 187s Preparing to unpack .../010-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 187s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 187s Selecting previously unselected package libavahi-common3:arm64. 187s Preparing to unpack .../011-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 187s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 187s Selecting previously unselected package libavahi-client3:arm64. 187s Preparing to unpack .../012-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 187s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 187s Selecting previously unselected package libblas3:arm64. 187s Preparing to unpack .../013-libblas3_3.12.0-3_arm64.deb ... 187s Unpacking libblas3:arm64 (3.12.0-3) ... 187s Selecting previously unselected package libcups2:arm64. 187s Preparing to unpack .../014-libcups2_2.4.6-0ubuntu3_arm64.deb ... 187s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 188s Selecting previously unselected package libdouble-conversion3:arm64. 188s Preparing to unpack .../015-libdouble-conversion3_3.3.0-1_arm64.deb ... 188s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 188s Selecting previously unselected package libdrm-amdgpu1:arm64. 188s Preparing to unpack .../016-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 188s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 188s Selecting previously unselected package libdrm-nouveau2:arm64. 188s Preparing to unpack .../017-libdrm-nouveau2_2.4.120-2_arm64.deb ... 188s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 188s Selecting previously unselected package libdrm-radeon1:arm64. 188s Preparing to unpack .../018-libdrm-radeon1_2.4.120-2_arm64.deb ... 188s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 188s Selecting previously unselected package libwayland-server0:arm64. 188s Preparing to unpack .../019-libwayland-server0_1.22.0-2.1_arm64.deb ... 188s Unpacking libwayland-server0:arm64 (1.22.0-2.1) ... 188s Selecting previously unselected package libxcb-randr0:arm64. 188s Preparing to unpack .../020-libxcb-randr0_1.15-1_arm64.deb ... 188s Unpacking libxcb-randr0:arm64 (1.15-1) ... 188s Selecting previously unselected package libgbm1:arm64. 188s Preparing to unpack .../021-libgbm1_24.0.1-1ubuntu1_arm64.deb ... 188s Unpacking libgbm1:arm64 (24.0.1-1ubuntu1) ... 188s Selecting previously unselected package libglapi-mesa:arm64. 188s Preparing to unpack .../022-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 188s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 188s Selecting previously unselected package libwayland-client0:arm64. 188s Preparing to unpack .../023-libwayland-client0_1.22.0-2.1_arm64.deb ... 188s Unpacking libwayland-client0:arm64 (1.22.0-2.1) ... 188s Selecting previously unselected package libx11-xcb1:arm64. 188s Preparing to unpack .../024-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 188s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 188s Selecting previously unselected package libxcb-dri2-0:arm64. 188s Preparing to unpack .../025-libxcb-dri2-0_1.15-1_arm64.deb ... 188s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 188s Selecting previously unselected package libxcb-dri3-0:arm64. 188s Preparing to unpack .../026-libxcb-dri3-0_1.15-1_arm64.deb ... 188s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 188s Selecting previously unselected package libxcb-present0:arm64. 188s Preparing to unpack .../027-libxcb-present0_1.15-1_arm64.deb ... 188s Unpacking libxcb-present0:arm64 (1.15-1) ... 188s Selecting previously unselected package libxcb-sync1:arm64. 188s Preparing to unpack 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... 189s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 189s Selecting previously unselected package libllvm17:arm64. 189s Preparing to unpack .../034-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 189s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 190s Selecting previously unselected package libgl1-mesa-dri:arm64. 190s Preparing to unpack .../035-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 190s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 190s Selecting previously unselected package libglvnd0:arm64. 190s Preparing to unpack .../036-libglvnd0_1.7.0-1_arm64.deb ... 190s Unpacking libglvnd0:arm64 (1.7.0-1) ... 190s Selecting previously unselected package libxcb-glx0:arm64. 190s Preparing to unpack .../037-libxcb-glx0_1.15-1_arm64.deb ... 190s Unpacking libxcb-glx0:arm64 (1.15-1) ... 190s Selecting previously unselected package libxcb-shm0:arm64. 190s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 190s Unpacking libxcb-shm0:arm64 (1.15-1) ... 190s Selecting previously unselected package libxfixes3:arm64. 190s Preparing to unpack .../039-libxfixes3_1%3a6.0.0-2_arm64.deb ... 190s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 190s Selecting previously unselected package libxxf86vm1:arm64. 190s Preparing to unpack .../040-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 190s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 190s Selecting previously unselected package libglx-mesa0:arm64. 190s Preparing to unpack .../041-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 190s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 190s Selecting previously unselected package libglx0:arm64. 190s Preparing to unpack .../042-libglx0_1.7.0-1_arm64.deb ... 190s Unpacking libglx0:arm64 (1.7.0-1) ... 190s Selecting previously unselected package libgl1:arm64. 190s Preparing to unpack .../043-libgl1_1.7.0-1_arm64.deb ... 190s Unpacking libgl1:arm64 (1.7.0-1) ... 190s Selecting previously unselected package libglew2.2:arm64. 191s Preparing to unpack .../044-libglew2.2_2.2.0-4_arm64.deb ... 191s Unpacking libglew2.2:arm64 (2.2.0-4) ... 191s Selecting previously unselected package libgomp1:arm64. 191s Preparing to unpack .../045-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 191s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 191s Selecting previously unselected package libgraphite2-3:arm64. 191s Preparing to unpack .../046-libgraphite2-3_1.3.14-2_arm64.deb ... 191s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 191s Selecting previously unselected package libharfbuzz0b:arm64. 191s Preparing to unpack .../047-libharfbuzz0b_8.3.0-2_arm64.deb ... 191s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 191s Selecting previously unselected package libsz2:arm64. 191s Preparing to unpack .../048-libsz2_1.1.2-1_arm64.deb ... 191s Unpacking libsz2:arm64 (1.1.2-1) ... 191s Selecting previously unselected package libhdf5-103-1:arm64. 191s Preparing to unpack .../049-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 191s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 191s Selecting previously unselected package libhdf5-hl-100:arm64. 191s Preparing to unpack .../050-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 191s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 191s Selecting previously unselected package x11-common. 191s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu2_all.deb ... 191s Unpacking x11-common (1:7.7+23ubuntu2) ... 191s Selecting previously unselected package libice6:arm64. 191s Preparing to unpack .../052-libice6_2%3a1.0.10-1build2_arm64.deb ... 191s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 191s Selecting previously unselected package libwacom-common. 191s Preparing to unpack .../053-libwacom-common_2.10.0-1_all.deb ... 191s Unpacking libwacom-common (2.10.0-1) ... 191s Selecting previously unselected package libwacom9:arm64. 191s Preparing to unpack .../054-libwacom9_2.10.0-1_arm64.deb ... 191s Unpacking libwacom9:arm64 (2.10.0-1) ... 191s Selecting previously unselected package libinput-bin. 191s Preparing to unpack .../055-libinput-bin_1.25.0-1_arm64.deb ... 191s Unpacking libinput-bin (1.25.0-1) ... 191s Selecting previously unselected package libmtdev1:arm64. 191s Preparing to unpack .../056-libmtdev1_1.1.6-1build4_arm64.deb ... 191s Unpacking libmtdev1:arm64 (1.1.6-1build4) ... 191s Selecting previously unselected package libinput10:arm64. 191s Preparing to unpack .../057-libinput10_1.25.0-1_arm64.deb ... 191s Unpacking libinput10:arm64 (1.25.0-1) ... 192s Selecting previously unselected package libjpeg-turbo8:arm64. 192s Preparing to unpack .../058-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 192s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 192s Selecting previously unselected package libjpeg8:arm64. 192s Preparing to unpack .../059-libjpeg8_8c-2ubuntu11_arm64.deb ... 192s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 192s Selecting previously unselected package liblapack3:arm64. 192s Preparing to unpack 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Unpacking libqt5core5a:arm64 (5.15.12+dfsg-3ubuntu1) ... 193s Selecting previously unselected package libqt5dbus5:arm64. 194s Preparing to unpack .../066-libqt5dbus5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 194s Unpacking libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ... 194s Selecting previously unselected package libegl1:arm64. 194s Preparing to unpack .../067-libegl1_1.7.0-1_arm64.deb ... 194s Unpacking libegl1:arm64 (1.7.0-1) ... 194s Selecting previously unselected package libqt5network5:arm64. 194s Preparing to unpack .../068-libqt5network5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 194s Unpacking libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ... 194s Selecting previously unselected package libsm6:arm64. 194s Preparing to unpack .../069-libsm6_2%3a1.2.3-1build2_arm64.deb ... 194s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 194s Selecting previously unselected package libxcb-icccm4:arm64. 194s Preparing to unpack .../070-libxcb-icccm4_0.4.1-1.1build2_arm64.deb ... 194s Unpacking libxcb-icccm4:arm64 (0.4.1-1.1build2) ... 194s Selecting previously unselected package libxcb-util1:arm64. 194s Preparing to unpack .../071-libxcb-util1_0.4.0-1build2_arm64.deb ... 194s Unpacking libxcb-util1:arm64 (0.4.0-1build2) ... 194s Selecting previously unselected package libxcb-image0:arm64. 194s Preparing to unpack .../072-libxcb-image0_0.4.0-2_arm64.deb ... 194s Unpacking libxcb-image0:arm64 (0.4.0-2) ... 195s Selecting previously unselected package libxcb-keysyms1:arm64. 195s Preparing to unpack .../073-libxcb-keysyms1_0.4.0-1build3_arm64.deb ... 195s Unpacking libxcb-keysyms1:arm64 (0.4.0-1build3) ... 195s Selecting previously unselected package libxcb-render0:arm64. 195s Preparing to unpack .../074-libxcb-render0_1.15-1_arm64.deb ... 195s Unpacking libxcb-render0:arm64 (1.15-1) ... 195s Selecting previously unselected package libxcb-render-util0:arm64. 195s Preparing to unpack .../075-libxcb-render-util0_0.3.9-1build3_arm64.deb ... 195s Unpacking libxcb-render-util0:arm64 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libxrender1:arm64. 195s Preparing to unpack .../081-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 195s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 195s Selecting previously unselected package libqt5gui5:arm64. 195s Preparing to unpack .../082-libqt5gui5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 195s Unpacking libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ... 195s Selecting previously unselected package libqt5widgets5:arm64. 195s Preparing to unpack .../083-libqt5widgets5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 195s Unpacking libqt5widgets5:arm64 (5.15.12+dfsg-3ubuntu1) ... 195s Selecting previously unselected package libqt5xml5:arm64. 195s Preparing to unpack .../084-libqt5xml5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 195s Unpacking libqt5xml5:arm64 (5.15.12+dfsg-3ubuntu1) ... 195s Selecting previously unselected package libqt5designer5:arm64. 195s Preparing to unpack .../085-libqt5designer5_5.15.12-2_arm64.deb ... 195s Unpacking libqt5designer5:arm64 (5.15.12-2) ... 195s Selecting previously unselected package libqt5sql5:arm64. 195s Preparing to unpack .../086-libqt5sql5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 195s Unpacking libqt5sql5:arm64 (5.15.12+dfsg-3ubuntu1) ... 196s Selecting previously unselected package libqt5help5:arm64. 196s Preparing to unpack .../087-libqt5help5_5.15.12-2_arm64.deb ... 196s Unpacking libqt5help5:arm64 (5.15.12-2) ... 196s Selecting previously unselected package libqt5opengl5:arm64. 196s Preparing to unpack .../088-libqt5opengl5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 196s Unpacking libqt5opengl5:arm64 (5.15.12+dfsg-3ubuntu1) ... 196s Selecting previously unselected package libqt5printsupport5:arm64. 196s Preparing to unpack .../089-libqt5printsupport5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 196s Unpacking libqt5printsupport5:arm64 (5.15.12+dfsg-3ubuntu1) ... 196s Selecting previously unselected package libqt5test5:arm64. 196s Preparing to unpack .../090-libqt5test5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 196s Unpacking libqt5test5:arm64 (5.15.12+dfsg-3ubuntu1) ... 196s Selecting previously unselected package python3-numpy. 196s Preparing to unpack .../091-python3-numpy_1%3a1.24.2-2_arm64.deb ... 196s Unpacking python3-numpy (1:1.24.2-2) ... 196s Selecting previously unselected package libopengl0:arm64. 196s Preparing to unpack .../092-libopengl0_1.7.0-1_arm64.deb ... 196s Unpacking libopengl0:arm64 (1.7.0-1) ... 196s Selecting previously unselected package libglu1-mesa:arm64. 196s Preparing to unpack .../093-libglu1-mesa_9.0.2-1.1_arm64.deb ... 196s Unpacking libglu1-mesa:arm64 (9.0.2-1.1) ... 196s Selecting previously unselected package python3-opengl. 196s Preparing to unpack .../094-python3-opengl_3.1.7+dfsg-1_all.deb ... 196s Unpacking python3-opengl (3.1.7+dfsg-1) ... 197s Selecting previously unselected package python3-pyqt5.sip. 197s Preparing to unpack .../095-python3-pyqt5.sip_12.13.0-1build1_arm64.deb ... 197s Unpacking python3-pyqt5.sip (12.13.0-1build1) ... 197s Selecting previously unselected package python3-pyqt5. 197s Preparing to unpack .../096-python3-pyqt5_5.15.10+dfsg-1build2_arm64.deb ... 197s Unpacking python3-pyqt5 (5.15.10+dfsg-1build2) ... 197s Selecting previously unselected package python3-pyqt5.qtopengl. 197s Preparing to unpack .../097-python3-pyqt5.qtopengl_5.15.10+dfsg-1build2_arm64.deb ... 197s Unpacking python3-pyqt5.qtopengl (5.15.10+dfsg-1build2) ... 197s Selecting previously unselected package pymol-data. 197s Preparing to unpack .../098-pymol-data_2.5.0+dfsg-1build4_all.deb ... 197s Unpacking pymol-data (2.5.0+dfsg-1build4) ... 197s Selecting previously unselected package python3-pymol. 197s Preparing to unpack .../099-python3-pymol_2.5.0+dfsg-1build4_arm64.deb ... 197s Unpacking python3-pymol (2.5.0+dfsg-1build4) ... 198s Selecting previously unselected package pymol. 198s Preparing to unpack .../100-pymol_2.5.0+dfsg-1build4_all.deb ... 198s Unpacking pymol (2.5.0+dfsg-1build4) ... 198s Selecting previously unselected package autopkgtest-satdep. 198s Preparing to unpack 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(1.15-1) ... 198s Setting up libxcb-icccm4:arm64 (0.4.1-1.1build2) ... 198s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 198s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 198s Setting up libaec0:arm64 (1.1.2-1) ... 198s Setting up libopengl0:arm64 (1.7.0-1) ... 198s Setting up libxcb-util1:arm64 (0.4.0-1build2) ... 198s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 198s Setting up libxcb-xkb1:arm64 (1.15-1) ... 198s Setting up libxcb-image0:arm64 (0.4.0-2) ... 198s Setting up libxcb-present0:arm64 (1.15-1) ... 198s Setting up libblas3:arm64 (3.12.0-3) ... 199s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 199s Setting up libxcb-xinerama0:arm64 (1.15-1) ... 199s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 199s Setting up libxcb-sync1:arm64 (1.15-1) ... 199s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 199s Setting up pymol-data (2.5.0+dfsg-1build4) ... 199s Setting up libxkbcommon-x11-0:arm64 (1.6.0-1) ... 199s Setting up fonts-dejavu-mono (2.37-8) ... 199s Setting up fonts-dejavu-core (2.37-8) ... 199s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 199s Setting up libqt5core5a:arm64 (5.15.12+dfsg-3ubuntu1) ... 199s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 199s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 199s Setting up libmtdev1:arm64 (1.1.6-1build4) ... 199s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 199s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 199s Setting up python3-pyqt5.sip (12.13.0-1build1) ... 199s Setting up libxshmfence1:arm64 (1.3-1build4) ... 199s Setting up libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ... 199s Setting up libxcb-randr0:arm64 (1.15-1) ... 199s Setting up libmd4c0:arm64 (0.4.8-1) ... 199s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 199s Setting up libglu1-mesa:arm64 (9.0.2-1.1) ... 199s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 199s Setting up libqt5test5:arm64 (5.15.12+dfsg-3ubuntu1) ... 199s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 199s Setting up libpython3.12:arm64 (3.12.2-1) ... 199s Setting up libsz2:arm64 (1.1.2-1) ... 199s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 199s Setting up libwacom-common (2.10.0-1) ... 199s Setting up libwayland-client0:arm64 (1.22.0-2.1) ... 199s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 199s Setting up python3.11-minimal (3.11.8-1) ... 199s Setting up libice6:arm64 (2:1.0.10-1build2) ... 199s Setting up liblapack3:arm64 (3.12.0-3) ... 199s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 199s Setting up libgbm1:arm64 (24.0.1-1ubuntu1) ... 199s Setting up libwacom9:arm64 (2.10.0-1) ... 199s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 200s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 200s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 200s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 200s Setting up libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ... 200s Setting up libinput-bin (1.25.0-1) ... 200s Setting up libqt5sql5:arm64 (5.15.12+dfsg-3ubuntu1) ... 200s Setting up libqt5xml5:arm64 (5.15.12+dfsg-3ubuntu1) ... 200s Setting up libegl-mesa0:arm64 (24.0.1-1ubuntu1) ... 200s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 200s Setting up libegl1:arm64 (1.7.0-1) ... 200s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 200s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 200s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 200s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 200s Setting up libinput10:arm64 (1.25.0-1) ... 200s Setting up python3.11 (3.11.8-1) ... 201s Setting up fontconfig (2.15.0-1ubuntu1) ... 203s Regenerating fonts cache... done. 203s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 203s Setting up libglx0:arm64 (1.7.0-1) ... 203s Setting up libgl1:arm64 (1.7.0-1) ... 203s Setting up python3-numpy (1:1.24.2-2) ... 205s Setting up libglew2.2:arm64 (2.2.0-4) ... 205s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 205s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 205s Setting up libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ... 205s Setting up libqt5widgets5:arm64 (5.15.12+dfsg-3ubuntu1) ... 205s Setting up python3-opengl (3.1.7+dfsg-1) ... 206s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 206s '''OpenGL extension AMD.vertex_shader_tessellator 207s Setting up libqt5help5:arm64 (5.15.12-2) ... 207s Setting up libqt5printsupport5:arm64 (5.15.12+dfsg-3ubuntu1) ... 207s Setting up libqt5opengl5:arm64 (5.15.12+dfsg-3ubuntu1) ... 207s Setting up libqt5designer5:arm64 (5.15.12-2) ... 207s Setting up python3-pyqt5 (5.15.10+dfsg-1build2) ... 207s Setting up python3-pyqt5.qtopengl (5.15.10+dfsg-1build2) ... 207s Setting up python3-pymol (2.5.0+dfsg-1build4) ... 207s /usr/lib/python3/dist-packages/chempy/sdf.py:23: SyntaxWarning: invalid escape sequence '\s' 207s getkee = re.compile("^>\s+<([^>]*)>") 207s /usr/lib/python3/dist-packages/chempy/sdf.py:24: SyntaxWarning: invalid escape sequence '\s' 207s gettag = re.compile("^>\s+<[^>]*>\s+\((.*)\)") 207s /usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py:849: SyntaxWarning: invalid escape sequence '\.' 207s g = re.search("(.*)(\..*)$", save_file) 207s /usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py:889: SyntaxWarning: invalid escape sequence '\.' 207s if re.search("\.pym*$|\.PYM*$",ofile): 207s /usr/lib/python3/dist-packages/pymol/internal.py:252: SyntaxWarning: invalid escape sequence '\.' 207s if re.search("[0-9]*\.png$",fname): # remove numbering, etc. 207s /usr/lib/python3/dist-packages/pymol/internal.py:253: SyntaxWarning: invalid escape sequence '\.' 207s fname = re.sub("[0-9]*\.png$","",fname) 207s /usr/lib/python3/dist-packages/pymol/internal.py:254: SyntaxWarning: invalid escape sequence '\.' 207s if re.search("[0-9]*\.ppm$",fname): 207s /usr/lib/python3/dist-packages/pymol/internal.py:257: SyntaxWarning: invalid escape sequence '\.' 207s fname = re.sub("[0-9]*\.ppm$","",fname) 207s /usr/lib/python3/dist-packages/pymol/movie.py:818: SyntaxWarning: invalid escape sequence '\W' 207s '''Return full path to executable or None. 207s /usr/lib/python3/dist-packages/pymol/moving.py:733: SyntaxWarning: invalid escape sequence '\s' 207s input = re.sub("\s"," ",specification) 207s /usr/lib/python3/dist-packages/pymol/parser.py:48: SyntaxWarning: invalid escape sequence '\[' 207s remove_lists_re = re.compile("\[[^\]]*\]") 207s /usr/lib/python3/dist-packages/pymol/parser.py:408: SyntaxWarning: invalid escape sequence '\.' 207s if re.search("\.py$|\.pym$",path) is not None: 207s /usr/lib/python3/dist-packages/pymol/plugins/installation.py:23: SyntaxWarning: invalid escape sequence '\p' 207s ''' 207s /usr/lib/python3/dist-packages/pymol/viewing.py:899: SyntaxWarning: invalid escape sequence '\.' 207s re_pat = re.compile("[0-9]+\.") 207s /usr/lib/python3/dist-packages/pymol/viewing.py:912: SyntaxWarning: invalid escape sequence '\.' 207s new_file = re.sub("\.pse$",".psw",new_file,re.I) 207s /usr/lib/python3/dist-packages/pymol/viewing.py:914: SyntaxWarning: invalid escape sequence '\.' 207s new_file = re.sub("\.psw$",".pse",new_file,re.I) 207s /usr/lib/python3/dist-packages/pymol/wizard/pseudoatom.py:13: SyntaxWarning: invalid escape sequence '\8' 207s self.prefix = 'Label text: \888' 208s Setting up pymol (2.5.0+dfsg-1build4) ... 208s Setting up autopkgtest-satdep (0) ... 208s Processing triggers for systemd (255.2-3ubuntu2) ... 208s Processing triggers for man-db (2.12.0-3) ... 209s Processing triggers for udev (255.2-3ubuntu2) ... 210s Processing triggers for libc-bin (2.39-0ubuntu2) ... 217s (Reading database ... 81094 files and directories currently installed.) 217s Removing autopkgtest-satdep (0) ... 218s autopkgtest [13:33:27]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 218s autopkgtest [13:33:27]: test command1: [----------------------- 218s Search pymol scripts in /tmp/autopkgtest.BjRSXY/build.egt/src/examples... 218s Processing new directory /tmp/autopkgtest.BjRSXY/build.egt/src/examples 218s Run 'pymol -c /tmp/autopkgtest.BjRSXY/build.egt/src/examples/chempy/generate_amber.py'... 218s Traceback (most recent call last): 218s File "", line 189, in _run_module_as_main 218s File "", line 112, in _get_module_details 218s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 218s from imp import find_module 218s ModuleNotFoundError: No module named 'imp' 218s autopkgtest [13:33:27]: test command1: -----------------------] 219s command1 FAIL non-zero exit status 1 219s autopkgtest [13:33:28]: test command1: - - - - - - - - - - results - - - - - - - - - - 219s autopkgtest [13:33:28]: test command2: preparing testbed 221s Reading package lists... 221s Building dependency tree... 221s Reading state information... 221s Starting pkgProblemResolver with broken count: 0 221s Starting 2 pkgProblemResolver with broken count: 0 222s Done 222s The following NEW packages will be installed: 222s autopkgtest-satdep 222s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 222s Need to get 0 B/700 B of archives. 222s After this operation, 0 B of additional disk space will be used. 222s Get:1 /tmp/autopkgtest.BjRSXY/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 226s Selecting previously unselected package autopkgtest-satdep. 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81094 files and directories currently installed.) 226s Preparing to unpack .../2-autopkgtest-satdep.deb ... 226s Unpacking autopkgtest-satdep (0) ... 229s Setting up autopkgtest-satdep (0) ... 232s (Reading database ... 81094 files and directories currently installed.) 232s Removing autopkgtest-satdep (0) ... 233s autopkgtest [13:33:42]: test command2: sh debian/tests/call-pymol-scripts data/demo 233s autopkgtest [13:33:42]: test command2: [----------------------- 233s Search pymol scripts in /tmp/autopkgtest.BjRSXY/build.egt/src/data/demo... 233s Processing new directory /tmp/autopkgtest.BjRSXY/build.egt/src/data/demo 233s Run 'pymol -c /tmp/autopkgtest.BjRSXY/build.egt/src/data/demo/cgo03.py'... 234s Traceback (most recent call last): 234s File "", line 189, in _run_module_as_main 234s File "", line 112, in _get_module_details 234s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 234s from imp import find_module 234s ModuleNotFoundError: No module named 'imp' 234s autopkgtest [13:33:43]: test command2: -----------------------] 234s command2 FAIL non-zero exit status 1 234s autopkgtest [13:33:43]: test command2: - - - - - - - - - - results - - - - - - - - - - 235s autopkgtest [13:33:44]: test command3: preparing testbed 236s Reading package lists... 236s Building dependency tree... 236s Reading state information... 237s Starting pkgProblemResolver with broken count: 0 237s Starting 2 pkgProblemResolver with broken count: 0 237s Done 238s The following NEW packages will be installed: 238s autopkgtest-satdep 238s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 238s Need to get 0 B/700 B of archives. 238s After this operation, 0 B of additional disk space will be used. 238s Get:1 /tmp/autopkgtest.BjRSXY/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 238s Selecting previously unselected package autopkgtest-satdep. 238s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81094 files and directories currently installed.) 238s Preparing to unpack .../3-autopkgtest-satdep.deb ... 238s Unpacking autopkgtest-satdep (0) ... 239s Setting up autopkgtest-satdep (0) ... 241s (Reading database ... 81094 files and directories currently installed.) 241s Removing autopkgtest-satdep (0) ... 242s autopkgtest [13:33:51]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 242s autopkgtest [13:33:51]: test command3: [----------------------- 242s Search pymol scripts in /usr/share/pymol/examples... 242s Processing new directory /usr/share/pymol/examples 242s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 242s Traceback (most recent call last): 242s File "", line 189, in _run_module_as_main 242s File "", line 112, in _get_module_details 242s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 242s from imp import find_module 242s ModuleNotFoundError: No module named 'imp' 242s autopkgtest [13:33:51]: test command3: -----------------------] 243s command3 FAIL non-zero exit status 1 243s autopkgtest [13:33:52]: test command3: - - - - - - - - - - results - - - - - - - - - - 243s autopkgtest [13:33:52]: test command4: preparing testbed 246s Reading package lists... 246s Building dependency tree... 246s Reading state information... 246s Starting pkgProblemResolver with broken count: 0 246s Starting 2 pkgProblemResolver with broken count: 0 246s Done 247s The following NEW packages will be installed: 247s autopkgtest-satdep 247s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 247s Need to get 0 B/700 B of archives. 247s After this operation, 0 B of additional disk space will be used. 247s Get:1 /tmp/autopkgtest.BjRSXY/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 248s Selecting previously unselected package autopkgtest-satdep. 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81094 files and directories currently installed.) 248s Preparing to unpack .../4-autopkgtest-satdep.deb ... 248s Unpacking autopkgtest-satdep (0) ... 248s Setting up autopkgtest-satdep (0) ... 251s (Reading database ... 81094 files and directories currently installed.) 251s Removing autopkgtest-satdep (0) ... 252s autopkgtest [13:34:01]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 252s autopkgtest [13:34:01]: test command4: [----------------------- 252s Search pymol scripts in /usr/share/pymol/examples/cookbook... 252s Processing new directory /usr/share/pymol/examples/cookbook 252s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 252s Traceback (most recent call last): 252s File "", line 189, in _run_module_as_main 252s File "", line 112, in _get_module_details 252s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 252s from imp import find_module 252s ModuleNotFoundError: No module named 'imp' 252s autopkgtest [13:34:01]: test command4: -----------------------] 253s command4 FAIL non-zero exit status 1 253s autopkgtest [13:34:02]: test command4: - - - - - - - - - - results - - - - - - - - - - 253s autopkgtest [13:34:02]: test command5: preparing testbed 255s Reading package lists... 255s Building dependency tree... 255s Reading state information... 255s Starting pkgProblemResolver with broken count: 0 256s Starting 2 pkgProblemResolver with broken count: 0 256s Done 256s The following NEW packages will be installed: 256s autopkgtest-satdep 256s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 256s Need to get 0 B/700 B of archives. 256s After this operation, 0 B of additional disk space will be used. 256s Get:1 /tmp/autopkgtest.BjRSXY/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 257s Selecting previously unselected package autopkgtest-satdep. 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81094 files and directories currently installed.) 257s Preparing to unpack .../5-autopkgtest-satdep.deb ... 257s Unpacking autopkgtest-satdep (0) ... 257s Setting up autopkgtest-satdep (0) ... 261s (Reading database ... 81094 files and directories currently installed.) 261s Removing autopkgtest-satdep (0) ... 261s autopkgtest [13:34:10]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 261s autopkgtest [13:34:10]: test command5: [----------------------- 262s Traceback (most recent call last): 262s File "", line 189, in _run_module_as_main 262s File "", line 112, in _get_module_details 262s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 262s from imp import find_module 262s ModuleNotFoundError: No module named 'imp' 262s Error in sys.excepthook: 262s Traceback (most recent call last): 262s File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 228, in partial_apport_excepthook 262s return apport_excepthook(binary, exc_type, exc_obj, exc_tb) 262s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 262s File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 114, in apport_excepthook 262s report["ExecutableTimestamp"] = str(int(os.stat(binary).st_mtime)) 262s ^^^^^^^^^^^^^^^ 262s FileNotFoundError: [Errno 2] No such file or directory: '/usr/share/pymol/examples/devel/-m' 262s 262s Original exception was: 262s Traceback (most recent call last): 262s File "", line 189, in _run_module_as_main 262s File "", line 112, in _get_module_details 262s File "/usr/lib/python3/dist-packages/pymol/__init__.py", line 81, in 262s from imp import find_module 262s ModuleNotFoundError: No module named 'imp' 262s autopkgtest [13:34:11]: test command5: -----------------------] 263s command5 FAIL non-zero exit status 1 263s autopkgtest [13:34:12]: test command5: - - - - - - - - - - results - - - - - - - - - - 264s autopkgtest [13:34:13]: @@@@@@@@@@@@@@@@@@@@ summary 264s command1 FAIL non-zero exit status 1 264s command2 FAIL non-zero exit status 1 264s command3 FAIL non-zero exit status 1 264s command4 FAIL non-zero exit status 1 264s command5 FAIL non-zero exit status 1 268s Creating nova instance adt-noble-arm64-pymol-20240315-132949-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...