0s autopkgtest [21:43:16]: starting date and time: 2024-03-13 21:43:16+0000 0s autopkgtest [21:43:16]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [21:43:16]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mrhkszqe/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:hdf5,src:openmpi,src:openssl,src:pmix --apt-upgrade poretools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 openssl/3.0.13-0ubuntu1 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-11.secgroup --name adt-noble-arm64-poretools-20240313-214316-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 98s autopkgtest [21:44:54]: testbed dpkg architecture: arm64 98s autopkgtest [21:44:54]: testbed apt version: 2.7.12 98s autopkgtest [21:44:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 99s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 99s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [450 kB] 99s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [42.3 kB] 99s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2818 kB] 100s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 100s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [603 kB] 101s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 101s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 101s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 101s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3218 kB] 101s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 101s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [42.3 kB] 101s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 103s Fetched 7327 kB in 3s (2298 kB/s) 103s Reading package lists... 104s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 105s Reading package lists... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 111s The following packages will be REMOVED: 111s libssl3 111s The following NEW packages will be installed: 111s libssl3t64 111s The following packages will be upgraded: 111s console-setup console-setup-linux keyboard-configuration openssl 111s 4 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 111s Need to get 4955 kB of archives. 111s After this operation, 74.8 kB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 112s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup-linux all 1.226ubuntu1 [1880 kB] 112s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup all 1.226ubuntu1 [110 kB] 112s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 keyboard-configuration all 1.226ubuntu1 [212 kB] 112s Preconfiguring packages ... 113s Fetched 4955 kB in 1s (3451 kB/s) 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 113s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 113s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 113s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 113s wget depends on libssl3 (>= 3.0.0). 113s u-boot-tools depends on libssl3 (>= 3.0.0). 113s tnftp depends on libssl3 (>= 3.0.0). 113s tcpdump depends on libssl3 (>= 3.0.0). 113s systemd-resolved depends on libssl3 (>= 3.0.0). 113s systemd depends on libssl3 (>= 3.0.0). 113s sudo depends on libssl3 (>= 3.0.0). 113s sbsigntool depends on libssl3 (>= 3.0.0). 113s rsync depends on libssl3 (>= 3.0.0). 113s python3-cryptography depends on libssl3 (>= 3.0.0). 113s openssh-server depends on libssl3 (>= 3.0.10). 113s openssh-client depends on libssl3 (>= 3.0.10). 113s mtd-utils depends on libssl3 (>= 3.0.0). 113s mokutil depends on libssl3 (>= 3.0.0). 113s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 113s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 113s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 113s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 113s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 113s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 113s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 113s libnvme1 depends on libssl3 (>= 3.0.0). 113s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 113s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 113s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 113s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 113s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 113s kmod depends on libssl3 (>= 3.0.0). 113s dhcpcd-base depends on libssl3 (>= 3.0.0). 113s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 113s 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 113s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 113s Selecting previously unselected package libssl3t64:arm64. 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75856 files and directories currently installed.) 113s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 113s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 113s Preparing to unpack .../console-setup-linux_1.226ubuntu1_all.deb ... 113s Unpacking console-setup-linux (1.226ubuntu1) over (1.223ubuntu2) ... 113s Preparing to unpack .../console-setup_1.226ubuntu1_all.deb ... 113s Unpacking console-setup (1.226ubuntu1) over (1.223ubuntu2) ... 113s Preparing to unpack .../keyboard-configuration_1.226ubuntu1_all.deb ... 113s Unpacking keyboard-configuration (1.226ubuntu1) over (1.223ubuntu2) ... 113s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 113s Setting up keyboard-configuration (1.226ubuntu1) ... 114s Your console font configuration will be updated the next time your system 114s boots. If you want to update it now, run 'setupcon' from a virtual console. 114s update-initramfs: deferring update (trigger activated) 114s Setting up openssl (3.0.13-0ubuntu1) ... 114s Setting up console-setup-linux (1.226ubuntu1) ... 115s Setting up console-setup (1.226ubuntu1) ... 116s update-initramfs: deferring update (trigger activated) 116s Processing triggers for man-db (2.12.0-3) ... 116s Processing triggers for libc-bin (2.39-0ubuntu2) ... 116s Processing triggers for initramfs-tools (0.142ubuntu20) ... 116s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 116s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 125s System running in EFI mode, skipping. 125s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 125s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2Reading package lists... 125s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 125s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 125s 125s Building dependency tree... 125s Reading state information... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 126s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 126s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 126s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 126s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 130s Reading package lists... 130s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/proposed.list:1 and /etc/apt/sources.list.d/proposed.sources:1 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Calculating upgrade... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s autopkgtest [21:45:28]: rebooting testbed after setup commands that affected boot 282s autopkgtest [21:47:58]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 284s autopkgtest [21:48:00]: @@@@@@@@@@@@@@@@@@@@ apt-source poretools 295s Get:1 http://ftpmaster.internal/ubuntu noble/universe poretools 0.6.0+dfsg-6 (dsc) [1556 B] 295s Get:2 http://ftpmaster.internal/ubuntu noble/universe poretools 0.6.0+dfsg-6 (tar) [68.1 MB] 295s Get:3 http://ftpmaster.internal/ubuntu noble/universe poretools 0.6.0+dfsg-6 (diff) [10.2 kB] 295s gpgv: Signature made Thu Dec 29 08:43:13 2022 UTC 295s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 295s gpgv: Can't check signature: No public key 295s dpkg-source: warning: cannot verify inline signature for ./poretools_0.6.0+dfsg-6.dsc: no acceptable signature found 297s autopkgtest [21:48:13]: testing package poretools version 0.6.0+dfsg-6 297s autopkgtest [21:48:13]: build not needed 404s autopkgtest [21:50:00]: test run-unit-test: preparing testbed 406s Reading package lists... 407s Building dependency tree... 407s Reading state information... 407s Starting pkgProblemResolver with broken count: 0 407s Starting 2 pkgProblemResolver with broken count: 0 407s Done 407s The following additional packages will be installed: 407s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libaec0 407s libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 407s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libjbig0 407s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 407s liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 407s libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 407s libxft2 libxrender1 libxslt1.1 libxss1 poretools poretools-data 407s python-matplotlib-data python3-appdirs python3-brotli python3-contourpy 407s python3-cycler python3-dateutil python3-decorator python3-fonttools 407s python3-fs python3-h5py python3-h5py-serial python3-kiwisolver python3-lxml 407s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 407s python3-packaging python3-pandas python3-pandas-lib python3-pil 407s python3-pil.imagetk python3-scipy python3-seaborn python3-sympy python3-tk 407s python3-ufolib2 python3-unicodedata2 tk8.6-blt2.5 unicode-data x11-common 407s Suggested packages: 407s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 407s python-h5py-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 407s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 407s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 407s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 407s python3-gmpy2 gcc gfortran python3-dev python3-pytest python-pandas-doc 407s python3-statsmodels python-pil-doc python-scipy-doc texlive-fonts-extra 407s python-sympy-doc tix python3-tk-dbg 407s Recommended packages: 407s javascript-common python3-bs4 python3-cssselect python3-html5lib 407s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 407s python3-tables python3-olefile g++ | c++-compiler python3-patsy 407s isympy-common 407s The following NEW packages will be installed: 407s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 407s fonts-lyx libaec0 libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 407s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 407s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 407s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libqhull-r8.0 407s libraqm0 libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 407s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 poretools 407s poretools-data python-matplotlib-data python3-appdirs python3-brotli 407s python3-contourpy python3-cycler python3-dateutil python3-decorator 407s python3-fonttools python3-fs python3-h5py python3-h5py-serial 407s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 407s python3-mpmath python3-numpy python3-packaging python3-pandas 407s python3-pandas-lib python3-pil python3-pil.imagetk python3-scipy 407s python3-seaborn python3-sympy python3-tk python3-ufolib2 407s python3-unicodedata2 tk8.6-blt2.5 unicode-data x11-common 407s 0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded. 407s Need to get 119 MB/119 MB of archives. 407s After this operation, 457 MB of additional disk space will be used. 407s Get:1 /tmp/autopkgtest.ILWOzu/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 407s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 408s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 408s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 408s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 408s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 408s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 408s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 408s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 408s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 408s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 408s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [618 kB] 408s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 blt arm64 2.5.3+dfsg-7 [4826 B] 408s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lyx all 2.4.0~RC3-1 [170 kB] 408s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 408s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 408s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 408s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 408s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 408s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 408s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 408s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 408s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu2 [1192 kB] 408s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu2 [55.8 kB] 408s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] 408s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 409s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 409s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 409s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 409s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 409s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] 409s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 409s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 409s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 409s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 409s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] 409s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 409s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 409s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 409s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 409s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 409s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 409s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.35-1 [161 kB] 409s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 409s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 409s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 409s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB] 409s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tk arm64 3.11.5-1 [112 kB] 409s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pil.imagetk arm64 10.2.0-1 [9708 B] 409s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 410s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-contourpy arm64 1.0.7-1build2 [244 kB] 410s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cycler all 0.11.0-2 [8202 B] 410s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-brotli arm64 1.1.0-2 [345 kB] 410s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 410s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB] 413s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 413s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mpmath all 1.2.1-3 [421 kB] 413s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sympy all 1.12-7 [3966 kB] 414s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 414s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fs all 2.4.16-3 [91.1 kB] 414s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.1.0-1 [2042 kB] 414s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build2 [28.4 kB] 414s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1 [362 kB] 414s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 416s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fonttools arm64 4.46.0-1 [1625 kB] 416s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-kiwisolver arm64 1.4.4-1build2 [65.4 kB] 416s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 416s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib arm64 3.6.3-1ubuntu3 [7291 kB] 417s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB] 419s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 419s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-seaborn all 0.13.2-2 [225 kB] 419s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu2 [887 kB] 420s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-h5py all 3.10.0-1ubuntu2 [7980 B] 420s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 poretools all 0.6.0+dfsg-6 [19.9 kB] 420s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 poretools-data all 0.6.0+dfsg-6 [44.0 MB] 426s Fetched 119 MB in 19s (6419 kB/s) 426s Selecting previously unselected package libtcl8.6:arm64. 426s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 426s Preparing to unpack .../00-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 426s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 426s Selecting previously unselected package fonts-dejavu-mono. 426s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 426s Unpacking fonts-dejavu-mono (2.37-8) ... 426s Selecting previously unselected package fonts-dejavu-core. 426s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 426s Unpacking fonts-dejavu-core (2.37-8) ... 426s Selecting previously unselected package fontconfig-config. 426s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 427s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 427s Selecting previously unselected package libfontconfig1:arm64. 427s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 427s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 427s Selecting previously unselected package libxrender1:arm64. 427s Preparing to unpack .../05-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 427s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 427s Selecting previously unselected package libxft2:arm64. 427s Preparing to unpack .../06-libxft2_2.3.6-1_arm64.deb ... 427s Unpacking libxft2:arm64 (2.3.6-1) ... 427s Selecting previously unselected package x11-common. 427s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu2_all.deb ... 427s Unpacking x11-common (1:7.7+23ubuntu2) ... 427s Selecting previously unselected package libxss1:arm64. 427s Preparing to unpack .../08-libxss1_1%3a1.2.3-1build2_arm64.deb ... 427s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 427s Selecting previously unselected package libtk8.6:arm64. 427s Preparing to unpack .../09-libtk8.6_8.6.13-2_arm64.deb ... 427s Unpacking libtk8.6:arm64 (8.6.13-2) ... 427s Selecting previously unselected package tk8.6-blt2.5. 427s Preparing to unpack .../10-tk8.6-blt2.5_2.5.3+dfsg-7_arm64.deb ... 427s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 427s Selecting previously unselected package blt. 427s Preparing to unpack .../11-blt_2.5.3+dfsg-7_arm64.deb ... 427s Unpacking blt (2.5.3+dfsg-7) ... 427s Selecting previously unselected package fonts-lyx. 427s Preparing to unpack .../12-fonts-lyx_2.4.0~RC3-1_all.deb ... 427s Unpacking fonts-lyx (2.4.0~RC3-1) ... 427s Selecting previously unselected package libaec0:arm64. 427s Preparing to unpack .../13-libaec0_1.1.2-1_arm64.deb ... 427s Unpacking libaec0:arm64 (1.1.2-1) ... 427s Selecting previously unselected package libblas3:arm64. 427s Preparing to unpack .../14-libblas3_3.12.0-3_arm64.deb ... 427s Unpacking libblas3:arm64 (3.12.0-3) ... 427s Selecting previously unselected package libdeflate0:arm64. 427s Preparing to unpack .../15-libdeflate0_1.19-1_arm64.deb ... 427s Unpacking libdeflate0:arm64 (1.19-1) ... 427s Selecting previously unselected package libgfortran5:arm64. 427s Preparing to unpack .../16-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 427s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 427s Selecting previously unselected package libgomp1:arm64. 427s Preparing to unpack .../17-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 427s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 427s Selecting previously unselected package libgraphite2-3:arm64. 427s Preparing to unpack .../18-libgraphite2-3_1.3.14-2_arm64.deb ... 427s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 427s Selecting previously unselected package libharfbuzz0b:arm64. 427s Preparing to unpack .../19-libharfbuzz0b_8.3.0-2_arm64.deb ... 427s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 427s Selecting previously unselected package libsz2:arm64. 427s Preparing to unpack .../20-libsz2_1.1.2-1_arm64.deb ... 427s Unpacking libsz2:arm64 (1.1.2-1) ... 427s Selecting previously unselected package libhdf5-103-1t64:arm64. 427s Preparing to unpack .../21-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_arm64.deb ... 427s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 427s Selecting previously unselected package libhdf5-hl-100t64:arm64. 427s Preparing to unpack .../22-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_arm64.deb ... 427s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 427s Selecting previously unselected package libimagequant0:arm64. 427s Preparing to unpack .../23-libimagequant0_2.18.0-1_arm64.deb ... 427s Unpacking libimagequant0:arm64 (2.18.0-1) ... 427s Selecting previously unselected package libjpeg-turbo8:arm64. 427s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 427s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 427s Selecting previously unselected package libjpeg8:arm64. 427s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 427s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 427s Selecting previously unselected package libjs-jquery. 427s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 427s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 427s Selecting previously unselected package libjs-jquery-ui. 427s Preparing to unpack .../27-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 427s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 427s Selecting previously unselected package liblapack3:arm64. 427s Preparing to unpack .../28-liblapack3_3.12.0-3_arm64.deb ... 427s Unpacking liblapack3:arm64 (3.12.0-3) ... 427s Selecting previously unselected package liblbfgsb0:arm64. 427s Preparing to unpack .../29-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ... 427s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 427s Selecting previously unselected package liblcms2-2:arm64. 427s Preparing to unpack .../30-liblcms2-2_2.14-2_arm64.deb ... 427s Unpacking liblcms2-2:arm64 (2.14-2) ... 427s Selecting previously unselected package liblerc4:arm64. 427s Preparing to unpack .../31-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 427s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 427s Selecting previously unselected package liblzf1:arm64. 427s Preparing to unpack .../32-liblzf1_3.6-4_arm64.deb ... 427s Unpacking liblzf1:arm64 (3.6-4) ... 427s Selecting previously unselected package libqhull-r8.0:arm64. 427s Preparing to unpack .../33-libqhull-r8.0_2020.2-6_arm64.deb ... 427s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 427s Selecting previously unselected package libraqm0:arm64. 427s Preparing to unpack .../34-libraqm0_0.10.1-1_arm64.deb ... 427s Unpacking libraqm0:arm64 (0.10.1-1) ... 427s Selecting previously unselected package libsharpyuv0:arm64. 427s Preparing to unpack .../35-libsharpyuv0_1.3.2-0.4_arm64.deb ... 427s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 427s Selecting previously unselected package libjbig0:arm64. 427s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 427s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 427s Selecting previously unselected package libwebp7:arm64. 427s Preparing to unpack .../37-libwebp7_1.3.2-0.4_arm64.deb ... 427s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 427s Selecting previously unselected package libtiff6:arm64. 427s Preparing to unpack .../38-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 427s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 427s Selecting previously unselected package libwebpdemux2:arm64. 427s Preparing to unpack .../39-libwebpdemux2_1.3.2-0.4_arm64.deb ... 427s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ... 428s Selecting previously unselected package libwebpmux3:arm64. 428s Preparing to unpack .../40-libwebpmux3_1.3.2-0.4_arm64.deb ... 428s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ... 428s Selecting previously unselected package libxslt1.1:arm64. 428s Preparing to unpack .../41-libxslt1.1_1.1.35-1_arm64.deb ... 428s Unpacking libxslt1.1:arm64 (1.1.35-1) ... 428s Selecting previously unselected package python-matplotlib-data. 428s Preparing to unpack .../42-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 428s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 428s Selecting previously unselected package python3-dateutil. 428s Preparing to unpack .../43-python3-dateutil_2.8.2-3_all.deb ... 428s Unpacking python3-dateutil (2.8.2-3) ... 428s Selecting previously unselected package libopenjp2-7:arm64. 428s Preparing to unpack .../44-libopenjp2-7_2.5.0-2_arm64.deb ... 428s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 428s Selecting previously unselected package python3-pil:arm64. 428s Preparing to unpack .../45-python3-pil_10.2.0-1_arm64.deb ... 428s Unpacking python3-pil:arm64 (10.2.0-1) ... 428s Selecting previously unselected package python3-tk:arm64. 428s Preparing to unpack .../46-python3-tk_3.11.5-1_arm64.deb ... 428s Unpacking python3-tk:arm64 (3.11.5-1) ... 428s Selecting previously unselected package python3-pil.imagetk:arm64. 428s Preparing to unpack .../47-python3-pil.imagetk_10.2.0-1_arm64.deb ... 428s Unpacking python3-pil.imagetk:arm64 (10.2.0-1) ... 428s Selecting previously unselected package python3-numpy. 428s Preparing to unpack .../48-python3-numpy_1%3a1.24.2-2_arm64.deb ... 428s Unpacking python3-numpy (1:1.24.2-2) ... 428s Selecting previously unselected package python3-contourpy. 428s Preparing to unpack .../49-python3-contourpy_1.0.7-1build2_arm64.deb ... 428s Unpacking python3-contourpy (1.0.7-1build2) ... 428s Selecting previously unselected package python3-cycler. 428s Preparing to unpack .../50-python3-cycler_0.11.0-2_all.deb ... 428s Unpacking python3-cycler (0.11.0-2) ... 428s Selecting previously unselected package python3-brotli. 428s Preparing to unpack .../51-python3-brotli_1.1.0-2_arm64.deb ... 428s Unpacking python3-brotli (1.1.0-2) ... 428s Selecting previously unselected package python3-decorator. 428s Preparing to unpack .../52-python3-decorator_5.1.1-5_all.deb ... 428s Unpacking python3-decorator (5.1.1-5) ... 428s Selecting previously unselected package python3-scipy. 428s Preparing to unpack .../53-python3-scipy_1.11.4-6_arm64.deb ... 428s Unpacking python3-scipy (1.11.4-6) ... 429s Selecting previously unselected package python3-ufolib2. 429s Preparing to unpack .../54-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 429s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 429s Selecting previously unselected package python3-mpmath. 429s Preparing to unpack .../55-python3-mpmath_1.2.1-3_all.deb ... 429s Unpacking python3-mpmath (1.2.1-3) ... 429s Selecting previously unselected package python3-sympy. 429s Preparing to unpack .../56-python3-sympy_1.12-7_all.deb ... 429s Unpacking python3-sympy (1.12-7) ... 429s Selecting previously unselected package python3-appdirs. 429s Preparing to unpack .../57-python3-appdirs_1.4.4-4_all.deb ... 429s Unpacking python3-appdirs (1.4.4-4) ... 429s Selecting previously unselected package python3-fs. 429s Preparing to unpack .../58-python3-fs_2.4.16-3_all.deb ... 429s Unpacking python3-fs (2.4.16-3) ... 429s Selecting previously unselected package python3-lxml:arm64. 429s Preparing to unpack .../59-python3-lxml_5.1.0-1_arm64.deb ... 429s Unpacking python3-lxml:arm64 (5.1.0-1) ... 429s Selecting previously unselected package python3-lz4. 429s Preparing to unpack .../60-python3-lz4_4.0.2+dfsg-1build2_arm64.deb ... 429s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 429s Selecting previously unselected package python3-unicodedata2. 429s Preparing to unpack .../61-python3-unicodedata2_15.1.0+ds-1_arm64.deb ... 429s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 429s Selecting previously unselected package unicode-data. 429s Preparing to unpack .../62-unicode-data_15.1.0-1_all.deb ... 429s Unpacking unicode-data (15.1.0-1) ... 430s Selecting previously unselected package python3-fonttools. 430s Preparing to unpack .../63-python3-fonttools_4.46.0-1_arm64.deb ... 430s Unpacking python3-fonttools (4.46.0-1) ... 430s Selecting previously unselected package python3-kiwisolver. 430s Preparing to unpack .../64-python3-kiwisolver_1.4.4-1build2_arm64.deb ... 430s Unpacking python3-kiwisolver (1.4.4-1build2) ... 430s Selecting previously unselected package python3-packaging. 430s Preparing to unpack .../65-python3-packaging_23.2-1_all.deb ... 430s Unpacking python3-packaging (23.2-1) ... 430s Selecting previously unselected package python3-matplotlib. 430s Preparing to unpack .../66-python3-matplotlib_3.6.3-1ubuntu3_arm64.deb ... 430s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 430s Selecting previously unselected package python3-pandas-lib:arm64. 430s Preparing to unpack .../67-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_arm64.deb ... 430s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 430s Selecting previously unselected package python3-pandas. 430s Preparing to unpack .../68-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 430s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 430s Selecting previously unselected package python3-seaborn. 430s Preparing to unpack .../69-python3-seaborn_0.13.2-2_all.deb ... 430s Unpacking python3-seaborn (0.13.2-2) ... 430s Selecting previously unselected package python3-h5py-serial. 430s Preparing to unpack .../70-python3-h5py-serial_3.10.0-1ubuntu2_arm64.deb ... 430s Unpacking python3-h5py-serial (3.10.0-1ubuntu2) ... 431s Selecting previously unselected package python3-h5py. 431s Preparing to unpack .../71-python3-h5py_3.10.0-1ubuntu2_all.deb ... 431s Unpacking python3-h5py (3.10.0-1ubuntu2) ... 431s Selecting previously unselected package poretools. 431s Preparing to unpack .../72-poretools_0.6.0+dfsg-6_all.deb ... 431s Unpacking poretools (0.6.0+dfsg-6) ... 431s Selecting previously unselected package poretools-data. 431s Preparing to unpack .../73-poretools-data_0.6.0+dfsg-6_all.deb ... 431s Unpacking poretools-data (0.6.0+dfsg-6) ... 431s Selecting previously unselected package autopkgtest-satdep. 431s Preparing to unpack .../74-1-autopkgtest-satdep.deb ... 431s Unpacking autopkgtest-satdep (0) ... 431s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 431s Setting up liblcms2-2:arm64 (2.14-2) ... 431s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 431s Setting up poretools-data (0.6.0+dfsg-6) ... 431s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 431s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 431s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 431s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 431s Setting up fonts-lyx (2.4.0~RC3-1) ... 431s Setting up x11-common (1:7.7+23ubuntu2) ... 431s Setting up libdeflate0:arm64 (1.19-1) ... 431s Setting up libqhull-r8.0:arm64 (2020.2-6) ... 431s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 431s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 431s Setting up libaec0:arm64 (1.1.2-1) ... 431s Setting up unicode-data (15.1.0-1) ... 431s Setting up python3-decorator (5.1.1-5) ... 432s Setting up libblas3:arm64 (3.12.0-3) ... 432s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 432s Setting up python3-packaging (23.2-1) ... 432s Setting up python3-brotli (1.1.0-2) ... 432s Setting up liblzf1:arm64 (3.6-4) ... 432s Setting up python3-cycler (0.11.0-2) ... 432s Setting up libimagequant0:arm64 (2.18.0-1) ... 432s Setting up fonts-dejavu-mono (2.37-8) ... 432s Setting up python3-kiwisolver (1.4.4-1build2) ... 432s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 432s Setting up fonts-dejavu-core (2.37-8) ... 432s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 432s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 432s Setting up libwebp7:arm64 (1.3.2-0.4) ... 432s Setting up libxslt1.1:arm64 (1.1.35-1) ... 432s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 432s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 432s Setting up python3-dateutil (2.8.2-3) ... 432s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 432s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 432s Setting up python3-mpmath (1.2.1-3) ... 433s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 433s Setting up libwebpmux3:arm64 (1.3.2-0.4) ... 433s Setting up python3-appdirs (1.4.4-4) ... 433s Setting up libsz2:arm64 (1.1.2-1) ... 433s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 433s Setting up python3-sympy (1.12-7) ... 438s Setting up liblapack3:arm64 (3.12.0-3) ... 438s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 438s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 438s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ... 438s Setting up python3-fs (2.4.16-3) ... 438s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 438s Setting up libraqm0:arm64 (0.10.1-1) ... 438s Setting up python3-numpy (1:1.24.2-2) ... 440s Setting up python3-lxml:arm64 (5.1.0-1) ... 440s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 440s Setting up python3-contourpy (1.0.7-1build2) ... 440s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 440s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 440s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 440s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu2) ... 440s Setting up libxft2:arm64 (2.3.6-1) ... 440s Setting up python3-scipy (1.11.4-6) ... 442s Setting up libtk8.6:arm64 (8.6.13-2) ... 442s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 442s Setting up python3-h5py-serial (3.10.0-1ubuntu2) ... 443s Setting up python3-pil:arm64 (10.2.0-1) ... 443s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 447s Setting up python3-h5py (3.10.0-1ubuntu2) ... 447s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 447s Setting up blt (2.5.3+dfsg-7) ... 447s Setting up python3-tk:arm64 (3.11.5-1) ... 447s Setting up python3-pil.imagetk:arm64 (10.2.0-1) ... 447s Setting up python3-fonttools (4.46.0-1) ... 448s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 448s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 449s Setting up python3-seaborn (0.13.2-2) ... 449s Setting up poretools (0.6.0+dfsg-6) ... 450s Setting up autopkgtest-satdep (0) ... 450s Processing triggers for libc-bin (2.39-0ubuntu2) ... 450s Processing triggers for man-db (2.12.0-3) ... 454s (Reading database ... 84919 files and directories currently installed.) 454s Removing autopkgtest-satdep (0) ... 455s autopkgtest [21:50:51]: test run-unit-test: [----------------------- 455s Test 1 455s poretools fastq --min-length 5000 test_data/ 456s PASS 456s 456s Test 2 456s poretools yield_plot \ 456s --plot-type basepairs \ 456s --saveas foo.pdf \ 456s test_data/ 458s poretools yield_plot \ 458s --plot-type basepairs \ 458s --saveas foo.png \ 458s --theme-bw \ 459s PASS 459s 459s Test 3 459s poretools winner test_data/ 459s None 459s poretools winner --type all test_data/ 459s None 460s poretools winner --type 2D test_data/ 460s None 460s poretools winner --type fwd,rev test_data/ 460s None 460s poretools winner --type best test_data/ 460s None 460s PASS 460s 460s Test 4 460s poretools stats test_data/ 461s WARNING:poretools:No valid sequences observed. 461s 461s PASS 461s 461s Test 5 461s poretools hist --num-bins 20 --max-length 10000 test_data/ --saveas pdf 462s PASS 462s 462s Test 6 462s poretools nucdist test_data/ 462s PASS 462s 462s Test 7 462s poretools qualdist test_data/ 462s PASS 462s 462s Test 8 462s poretools qualpos test_data/ 463s INFO:poreminion:Processing data... 463s INFO:poreminion:Constructing box plot... 463s INFO:poreminion:Showing plot... 463s PASS 463s 463s Test 9 463s poretools tabular test_data/2016_3_4_3507_1_ch120_read418_strand.fast5 463s length name sequence quals 463s PASS 463s 463s Test 10 463s poretools events test_data/ | head -5 464s file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_C p_G p_T raw_index 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 template 56.92826979417067 1886.8768260292163 1.0174909124950842 0.01294820717131474 b'GGTCGT' 58.06829882492447 0 0.045658078 b'GGTCGT' 0.045658078 0.21582523 0.12930822 0.061281197 0.5935851 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 template 50.29186241736779 1886.8897742363877 1.3958432508295002 0.004316069057104913 b'GTCGTC' 50.53454050962543 1 0.11061398 b'GTCGTC' 0.11061398 0.064669624 0.532366 0.30797118 0.09499311 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 template 47.79690470377604 1886.8940903054447 1.7197763737454046 0.00796812749003984 b'TCGTCT' 47.07548222400093 1 0.1818277 b'TCGTCT' 0.1818277 0.00040437476 0.0062024444 0.7809443 0.2124488 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 template 55.41889720243565 1886.9020584329348 1.4753055728119997 0.0056440903054448864 b'CGTCTT' 54.69394435515785 1 0.30986825 b'CGTCTT' 0.30986825 2.5426989e-05 0.053096168 0.00037698596 0.94650024 464s PASS 464s 464s Test 11 464s poretools events --pre-basecalled test_data/ | head -5 464s file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_C p_G p_T raw_index 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 pre_basecalled 68.18681601562501 5682716 33.29445587737303 25 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 pre_basecalled 52.217123107910155 5682741 0.9567022706644928 16 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 pre_basecalled 69.72551138070914 5682757 2.5310776555205967 13 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 pre_basecalled 82.38371659712358 5682770 1.8623386567058067 22 464s PASS 464s 464s Test 12 464s poretools times test_data/ 464s channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute 464s 128 test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 0 1457127309 1457129195 23 1457129218 2016-03-04T22:06:35+0000 04 22 06 464s 126 test_data/2016_3_4_3507_1_ch126_read618_strand.fast5 0 1457127309 1457132641 29 1457132670 2016-03-04T23:04:01+0000 04 23 04 464s 128 test_data/2016_3_4_3507_1_ch128_read404_strand.fast5 0 1457127309 1457129255 54 1457129309 2016-03-04T22:07:35+0000 04 22 07 464s 126 test_data/2016_3_4_3507_1_ch126_read1377_strand.fast5 0 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 464s 13 test_data/2016_3_4_3507_1_ch13_read1456_strand.fast5 0 1457127309 1457143016 46 1457143062 2016-03-05T01:56:56+0000 05 01 56 464s 126 test_data/2016_3_4_3507_1_ch126_read940_strand.fast5 0 1457127309 1457137663 23 1457137686 2016-03-05T00:27:43+0000 05 00 27 464s 128 test_data/2016_3_4_3507_1_ch128_read723_strand.fast5 0 1457127309 1457133407 47 1457133454 2016-03-04T23:16:47+0000 04 23 16 464s 126 test_data/2016_3_4_3507_1_ch126_read857_strand.fast5 0 1457127309 1457136882 36 1457136918 2016-03-05T00:14:42+0000 05 00 14 464s 120 test_data/2016_3_4_3507_1_ch120_read706_strand.fast5 0 1457127309 1457134485 41 1457134526 2016-03-04T23:34:45+0000 04 23 34 464s 120 test_data/2016_3_4_3507_1_ch120_read433_strand.fast5 0 1457127309 1457130943 72 1457131015 2016-03-04T22:35:43+0000 04 22 35 464s 128 test_data/2016_3_4_3507_1_ch128_read204_strand.fast5 0 1457127309 1457128023 19 1457128042 2016-03-04T21:47:03+0000 04 21 47 464s 128 test_data/2016_3_4_3507_1_ch128_read361_strand.fast5 0 1457127309 1457128820 50 1457128870 2016-03-04T22:00:20+0000 04 22 00 464s 128 test_data/2016_3_4_3507_1_ch128_read783_strand.fast5 0 1457127309 1457134205 49 1457134254 2016-03-04T23:30:05+0000 04 23 30 464s 120 test_data/2016_3_4_3507_1_ch120_read505_strand.fast5 0 1457127309 1457132189 17 1457132206 2016-03-04T22:56:29+0000 04 22 56 464s 120 test_data/2016_3_4_3507_1_ch120_read542_strand.fast5 0 1457127309 1457132498 77 1457132575 2016-03-04T23:01:38+0000 04 23 01 464s 120 test_data/2016_3_4_3507_1_ch120_read521_strand.fast5 0 1457127309 1457132324 40 1457132364 2016-03-04T22:58:44+0000 04 22 58 464s 13 test_data/2016_3_4_3507_1_ch13_read1474_strand.fast5 0 1457127309 1457143353 35 1457143388 2016-03-05T02:02:33+0000 05 02 02 464s 128 test_data/2016_3_4_3507_1_ch128_read365_strand.fast5 0 1457127309 1457128915 54 1457128969 2016-03-04T22:01:55+0000 04 22 01 464s 13 test_data/2016_3_4_3507_1_ch13_read1130_strand.fast5 0 1457127309 1457137813 46 1457137859 2016-03-05T00:30:13+0000 05 00 30 464s 128 test_data/2016_3_4_3507_1_ch128_read647_strand.fast5 0 1457127309 1457132386 20 1457132406 2016-03-04T22:59:46+0000 04 22 59 464s 128 test_data/2016_3_4_3507_1_ch128_read503_strand.fast5 0 1457127309 1457130219 92 1457130311 2016-03-04T22:23:39+0000 04 22 23 464s 126 test_data/2016_3_4_3507_1_ch126_read160_strand.fast5 0 1457127309 1457127855 11 1457127866 2016-03-04T21:44:15+0000 04 21 44 464s 126 test_data/2016_3_4_3507_1_ch126_read899_strand.fast5 0 1457127309 1457137287 20 1457137307 2016-03-05T00:21:27+0000 05 00 21 464s 120 test_data/2016_3_4_3507_1_ch120_read83_strand.fast5 0 1457127309 1457127862 51 1457127913 2016-03-04T21:44:22+0000 04 21 44 464s 13 test_data/2016_3_4_3507_1_ch13_read1404_strand.fast5 0 1457127309 1457141911 44 1457141955 2016-03-05T01:38:31+0000 05 01 38 464s 126 test_data/2016_3_4_3507_1_ch126_read249_strand.fast5 0 1457127309 1457128880 38 1457128918 2016-03-04T22:01:20+0000 04 22 01 464s 128 test_data/2016_3_4_3507_1_ch128_read430_strand.fast5 0 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 464s 126 test_data/2016_3_4_3507_1_ch126_read1066_strand.fast5 0 1457127309 1457139171 38 1457139209 2016-03-05T00:52:51+0000 05 00 52 464s 13 test_data/2016_3_4_3507_1_ch13_read1150_strand.fast5 0 1457127309 1457138371 56 1457138427 2016-03-05T00:39:31+0000 05 00 39 464s 126 test_data/2016_3_4_3507_1_ch126_read743_strand.fast5 0 1457127309 1457134273 56 1457134329 2016-03-04T23:31:13+0000 04 23 31 464s 128 test_data/2016_3_4_3507_1_ch128_read753_strand.fast5 0 1457127309 1457133727 53 1457133780 2016-03-04T23:22:07+0000 04 23 22 464s 128 test_data/2016_3_4_3507_1_ch128_read763_strand.fast5 0 1457127309 1457133850 25 1457133875 2016-03-04T23:24:10+0000 04 23 24 464s 13 test_data/2016_3_4_3507_1_ch13_read1414_strand.fast5 0 1457127309 1457142000 23 1457142023 2016-03-05T01:40:00+0000 05 01 40 464s 126 test_data/2016_3_4_3507_1_ch126_read501_strand.fast5 0 1457127309 1457131059 110 1457131169 2016-03-04T22:37:39+0000 04 22 37 464s 126 test_data/2016_3_4_3507_1_ch126_read969_strand.fast5 0 1457127309 1457138004 19 1457138023 2016-03-05T00:33:24+0000 05 00 33 464s 128 test_data/2016_3_4_3507_1_ch128_read422_strand.fast5 0 1457127309 1457129421 35 1457129456 2016-03-04T22:10:21+0000 04 22 10 464s 126 test_data/2016_3_4_3507_1_ch126_read324_strand.fast5 0 1457127309 1457129690 43 1457129733 2016-03-04T22:14:50+0000 04 22 14 464s 126 test_data/2016_3_4_3507_1_ch126_read223_strand.fast5 0 1457127309 1457128649 21 1457128670 2016-03-04T21:57:29+0000 04 21 57 464s 126 test_data/2016_3_4_3507_1_ch126_read833_strand.fast5 0 1457127309 1457136341 50 1457136391 2016-03-05T00:05:41+0000 05 00 05 464s 126 test_data/2016_3_4_3507_1_ch126_read382_strand.fast5 0 1457127309 1457130139 15 1457130154 2016-03-04T22:22:19+0000 04 22 22 464s 126 test_data/2016_3_4_3507_1_ch126_read1079_strand.fast5 0 1457127309 1457139272 90 1457139362 2016-03-05T00:54:32+0000 05 00 54 464s 128 test_data/2016_3_4_3507_1_ch128_read635_strand.fast5 0 1457127309 1457132225 71 1457132296 2016-03-04T22:57:05+0000 04 22 57 464s 120 test_data/2016_3_4_3507_1_ch120_read415_strand.fast5 0 1457127309 1457130808 24 1457130832 2016-03-04T22:33:28+0000 04 22 33 464s 128 test_data/2016_3_4_3507_1_ch128_read376_strand.fast5 0 1457127309 1457129030 83 1457129113 2016-03-04T22:03:50+0000 04 22 03 464s 126 test_data/2016_3_4_3507_1_ch126_read326_strand.fast5 0 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16 464s 126 test_data/2016_3_4_3507_1_ch126_read1169_strand.fast5 0 1457127309 1457140028 30 1457140058 2016-03-05T01:07:08+0000 05 01 07 464s 126 test_data/2016_3_4_3507_1_ch126_read601_strand.fast5 0 1457127309 1457132558 20 1457132578 2016-03-04T23:02:38+0000 04 23 02 464s 120 test_data/2016_3_4_3507_1_ch120_read586_strand.fast5 0 1457127309 1457132971 43 1457133014 2016-03-04T23:09:31+0000 04 23 09 464s 120 test_data/2016_3_4_3507_1_ch120_read89_strand.fast5 0 1457127309 1457127952 12 1457127964 2016-03-04T21:45:52+0000 04 21 45 464s 128 test_data/2016_3_4_3507_1_ch128_read521_strand.fast5 0 1457127309 1457130585 43 1457130628 2016-03-04T22:29:45+0000 04 22 29 464s 128 test_data/2016_3_4_3507_1_ch128_read270_strand.fast5 0 1457127309 1457128363 39 1457128402 2016-03-04T21:52:43+0000 04 21 52 464s 126 test_data/2016_3_4_3507_1_ch126_read843_strand.fast5 0 1457127309 1457136727 48 1457136775 2016-03-05T00:12:07+0000 05 00 12 464s 126 test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 0 1457127309 1457132072 95 1457132167 2016-03-04T22:54:32+0000 04 22 54 464s 128 test_data/2016_3_4_3507_1_ch128_read790_strand.fast5 0 1457127309 1457134331 52 1457134383 2016-03-04T23:32:11+0000 04 23 32 464s 13 test_data/2016_3_4_3507_1_ch13_read1132_strand.fast5 0 1457127309 1457137901 79 1457137980 2016-03-05T00:31:41+0000 05 00 31 464s 128 test_data/2016_3_4_3507_1_ch128_read95_strand.fast5 0 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 464s 126 test_data/2016_3_4_3507_1_ch126_read42_strand.fast5 0 1457127309 1457127427 64 1457127491 2016-03-04T21:37:07+0000 04 21 37 464s 120 test_data/2016_3_4_3507_1_ch120_read353_strand.fast5 0 1457127309 1457129863 28 1457129891 2016-03-04T22:17:43+0000 04 22 17 464s 126 test_data/2016_3_4_3507_1_ch126_read831_strand.fast5 0 1457127309 1457136233 64 1457136297 2016-03-05T00:03:53+0000 05 00 03 464s 120 test_data/2016_3_4_3507_1_ch120_read635_strand.fast5 0 1457127309 1457133473 43 1457133516 2016-03-04T23:17:53+0000 04 23 17 464s 120 test_data/2016_3_4_3507_1_ch120_read418_strand.fast5 0 1457127309 1457130851 31 1457130882 2016-03-04T22:34:11+0000 04 22 34 464s 52 test_data/COLLES_L160693_20160728_FNFAB23794_MN17350_sequencing_run_E_coli_K12_1D_R9_SpotON_41280_ch52_read58_strand.fast5 0 1469741121 1469741953 45 1469741998 2016-07-28T21:39:13+0000 28 21 39 464s 120 test_data/2016_3_4_3507_1_ch120_read240_strand.fast5 0 1457127309 1457128868 47 1457128915 2016-03-04T22:01:08+0000 04 22 01 464s 126 test_data/2016_3_4_3507_1_ch126_read1387_strand.fast5 0 1457127309 1457148938 19 1457148957 2016-03-05T03:35:38+0000 05 03 35 464s 126 test_data/2016_3_4_3507_1_ch126_read914_strand.fast5 0 1457127309 1457137430 17 1457137447 2016-03-05T00:23:50+0000 05 00 23 464s 126 test_data/2016_3_4_3507_1_ch126_read217_strand.fast5 0 1457127309 1457128331 70 1457128401 2016-03-04T21:52:11+0000 04 21 52 464s 126 test_data/2016_3_4_3507_1_ch126_read1250_strand.fast5 0 1457127309 1457141826 25 1457141851 2016-03-05T01:37:06+0000 05 01 37 464s 120 test_data/2016_3_4_3507_1_ch120_read443_strand.fast5 0 1457127309 1457131100 7 1457131107 2016-03-04T22:38:20+0000 04 22 38 464s 126 test_data/2016_3_4_3507_1_ch126_read700_strand.fast5 0 1457127309 1457133555 64 1457133619 2016-03-04T23:19:15+0000 04 23 19 464s PASS 464s 464s Test 13 464s poretools index test_data | head -5 464s source_filename template_fwd_length complement_rev_length 2d_length asic_id asic_temp heatsink_temp channel exp_start_time exp_start_time_string_date exp_start_time_string_time start_time start_time_string_date start_time_string_time duration fast5_version 464s test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 None None None 3571011476 30.37 36.99 128 1457127309 2016-Mar-04 (Fri) 21:35:09 1457129195 2016-Mar-04 (Fri) 22:06:35 23 metrichor1.16 464s test_data/2016_3_4_3507_1_ch126_read618_strand.fast5 None None None 3571011476 30.37 36.99 126 1457127309 2016-Mar-04 (Fri) 21:35:09 1457132641 2016-Mar-04 (Fri) 23:04:01 29 metrichor1.16 464s test_data/2016_3_4_3507_1_ch128_read404_strand.fast5 None None None 3571011476 30.37 36.99 128 1457127309 2016-Mar-04 (Fri) 21:35:09 1457129255 2016-Mar-04 (Fri) 22:07:35 54 metrichor1.16 464s test_data/2016_3_4_3507_1_ch126_read1377_strand.fast5 None None None 3571011476 30.37 36.99 126 1457127309 2016-Mar-04 (Fri) 21:35:09 1457148908 2016-Mar-05 (Sat) 03:35:08 5 metrichor1.16 464s PASS 464s 465s autopkgtest [21:51:01]: test run-unit-test: -----------------------] 465s run-unit-test PASS 465s autopkgtest [21:51:01]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 466s autopkgtest [21:51:02]: @@@@@@@@@@@@@@@@@@@@ summary 466s run-unit-test PASS 482s Creating nova instance adt-noble-arm64-poretools-20240313-214316-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240313.img (UUID a0e860fd-0684-417f-821d-d8092ab02621)...