0s autopkgtest [17:04:00]: starting date and time: 2024-03-16 17:04:00+0000 0s autopkgtest [17:04:00]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:04:00]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1vy9sazc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:hdf5,src:curl,src:libpsl,src:mpich,src:openmpi,src:openssl,src:orthanc-python,src:pmix --apt-upgrade picopore --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=hdf5/1.10.10+repack-3.1ubuntu3 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 mpich/4.2.0-5build1 openmpi/4.1.6-6ubuntu1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-6.secgroup --name adt-noble-arm64-picopore-20240316-170400-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 197s autopkgtest [17:07:17]: testbed dpkg architecture: arm64 197s autopkgtest [17:07:17]: testbed apt version: 2.7.12 197s autopkgtest [17:07:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 197s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 198s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 198s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 198s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 198s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 198s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 198s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 198s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 198s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 198s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 198s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 198s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 198s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 200s Fetched 9063 kB in 2s (5642 kB/s) 200s Reading package lists... 203s Reading package lists... 203s Building dependency tree... 203s Reading state information... 204s Calculating upgrade... 204s The following packages will be REMOVED: 204s libssl3 204s The following NEW packages will be installed: 204s libssl3t64 204s The following packages have been kept back: 204s curl 204s The following packages will be upgraded: 204s openssl ubuntu-minimal ubuntu-standard 204s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 204s Need to get 2775 kB of archives. 204s After this operation, 72.7 kB of additional disk space will be used. 204s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 205s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 205s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 205s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 205s Fetched 2775 kB in 1s (4030 kB/s) 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 206s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 206s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 206s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 206s wget depends on libssl3 (>= 3.0.0). 206s u-boot-tools depends on libssl3 (>= 3.0.0). 206s tnftp depends on libssl3 (>= 3.0.0). 206s tcpdump depends on libssl3 (>= 3.0.0). 206s systemd-resolved depends on libssl3 (>= 3.0.0). 206s systemd depends on libssl3 (>= 3.0.0). 206s sudo depends on libssl3 (>= 3.0.0). 206s sbsigntool depends on libssl3 (>= 3.0.0). 206s rsync depends on libssl3 (>= 3.0.0). 206s python3-cryptography depends on libssl3 (>= 3.0.0). 206s openssh-server depends on libssl3 (>= 3.0.10). 206s openssh-client depends on libssl3 (>= 3.0.10). 206s mtd-utils depends on libssl3 (>= 3.0.0). 206s mokutil depends on libssl3 (>= 3.0.0). 206s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 206s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 206s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 206s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 206s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 206s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 206s libnvme1 depends on libssl3 (>= 3.0.0). 206s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 206s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 206s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 206s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 206s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 206s kmod depends on libssl3 (>= 3.0.0). 206s dhcpcd-base depends on libssl3 (>= 3.0.0). 206s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 206s 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 206s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 206s Selecting previously unselected package libssl3t64:arm64. 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 206s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 206s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 206s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 206s Unpacking ubuntu-minimal (1.536) over (1.535) ... 206s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 206s Unpacking ubuntu-standard (1.536) over (1.535) ... 206s Setting up ubuntu-minimal (1.536) ... 206s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 206s Setting up ubuntu-standard (1.536) ... 206s Setting up openssl (3.0.13-0ubuntu1) ... 206s Processing triggers for man-db (2.12.0-3) ... 207s Processing triggers for libc-bin (2.39-0ubuntu2) ... 207s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 209s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 209s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 209s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 209s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 210s Reading package lists... 211s Reading package lists... 211s Building dependency tree... 211s Reading state information... 211s Calculating upgrade... 212s The following packages have been kept back: 212s curl 212s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 213s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 215s autopkgtest [17:07:35]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 216s autopkgtest [17:07:36]: @@@@@@@@@@@@@@@@@@@@ apt-source picopore 218s Get:1 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (dsc) [2191 B] 218s Get:2 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (tar) [6276 kB] 218s Get:3 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (diff) [5332 B] 218s gpgv: Signature made Fri Dec 15 20:40:34 2023 UTC 218s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 218s gpgv: issuer "tille@debian.org" 218s gpgv: Can't check signature: No public key 218s dpkg-source: warning: cannot verify inline signature for ./picopore_1.2.0-3.dsc: no acceptable signature found 219s autopkgtest [17:07:39]: testing package picopore version 1.2.0-3 219s autopkgtest [17:07:39]: build not needed 220s autopkgtest [17:07:40]: test run-unit-test: preparing testbed 221s Reading package lists... 221s Building dependency tree... 221s Reading state information... 222s Starting pkgProblemResolver with broken count: 0 222s Starting 2 pkgProblemResolver with broken count: 0 222s Done 222s The following additional packages will be installed: 222s curl hdf5-tools libaec0 libblas3 libcurl4t64 libgfortran5 libhdf5-103-1t64 222s libhdf5-hl-100 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 222s liblzf1 libpsl5t64 libpython3.11-minimal libpython3.11-stdlib libsz2 222s picopore python3-all python3-distutils python3-h5py python3-h5py-serial 222s python3-lib2to3 python3-numpy python3-picopore python3-watchdog python3.11 222s python3.11-minimal 222s Suggested packages: 222s python-h5py-doc gcc gfortran python3-dev python3-pytest python3.11-venv 222s python3.11-doc binfmt-support 222s Recommended packages: 222s javascript-common 222s The following packages will be REMOVED: 222s libcurl4 libpsl5 222s The following NEW packages will be installed: 222s autopkgtest-satdep hdf5-tools libaec0 libblas3 libcurl4t64 libgfortran5 222s libhdf5-103-1t64 libhdf5-hl-100 libjs-jquery libjs-sphinxdoc 222s libjs-underscore liblapack3 liblzf1 libpsl5t64 libpython3.11-minimal 222s libpython3.11-stdlib libsz2 picopore python3-all python3-distutils 222s python3-h5py python3-h5py-serial python3-lib2to3 python3-numpy 222s python3-picopore python3-watchdog python3.11 python3.11-minimal 222s The following packages will be upgraded: 222s curl 223s 1 upgraded, 28 newly installed, 2 to remove and 0 not upgraded. 223s Need to get 17.5 MB/17.5 MB of archives. 223s After this operation, 76.7 MB of additional disk space will be used. 223s Get:1 /tmp/autopkgtest.uchQ0I/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 223s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 223s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 223s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 223s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 223s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 223s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 223s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 223s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 223s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 223s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [1192 kB] 223s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 hdf5-tools arm64 1.10.10+repack-3.1ubuntu3 [315 kB] 223s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 223s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 223s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 223s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 223s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 223s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 223s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 223s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 223s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 224s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu1 [1462 kB] 224s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 224s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-watchdog all 3.0.0-1 [121 kB] 224s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-picopore all 1.2.0-3 [15.6 kB] 224s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 picopore all 1.2.0-3 [9878 B] 224s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] 224s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] 224s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 224s Fetched 17.5 MB in 1s (15.7 MB/s) 224s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 224s wget depends on libpsl5 (>= 0.16.0). 224s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 224s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 224s 224s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 224s Removing libpsl5:arm64 (0.21.2-1build1) ... 224s Selecting previously unselected package libpsl5t64:arm64. 224s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 224s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 224s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 224s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 224s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 224s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 224s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 224s Selecting previously unselected package libcurl4t64:arm64. 224s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 224s Preparing to unpack .../00-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 224s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 224s Selecting previously unselected package libpython3.11-minimal:arm64. 224s Preparing to unpack .../01-libpython3.11-minimal_3.11.8-1_arm64.deb ... 224s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 224s Selecting previously unselected package python3.11-minimal. 224s Preparing to unpack .../02-python3.11-minimal_3.11.8-1_arm64.deb ... 225s Unpacking python3.11-minimal (3.11.8-1) ... 225s Selecting previously unselected package libpython3.11-stdlib:arm64. 225s Preparing to unpack .../03-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 225s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 225s Selecting previously unselected package python3.11. 225s Preparing to unpack .../04-python3.11_3.11.8-1_arm64.deb ... 225s Unpacking python3.11 (3.11.8-1) ... 225s Selecting previously unselected package libaec0:arm64. 225s Preparing to unpack .../05-libaec0_1.1.2-1_arm64.deb ... 225s Unpacking libaec0:arm64 (1.1.2-1) ... 225s Selecting previously unselected package libsz2:arm64. 225s Preparing to unpack .../06-libsz2_1.1.2-1_arm64.deb ... 225s Unpacking libsz2:arm64 (1.1.2-1) ... 225s Selecting previously unselected package libhdf5-103-1t64:arm64. 225s Preparing to unpack .../07-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 225s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 225s Selecting previously unselected package hdf5-tools. 225s Preparing to unpack .../08-hdf5-tools_1.10.10+repack-3.1ubuntu3_arm64.deb ... 225s Unpacking hdf5-tools (1.10.10+repack-3.1ubuntu3) ... 225s Selecting previously unselected package libblas3:arm64. 225s Preparing to unpack .../09-libblas3_3.12.0-3_arm64.deb ... 225s Unpacking libblas3:arm64 (3.12.0-3) ... 225s Selecting previously unselected package libgfortran5:arm64. 225s Preparing to unpack .../10-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 225s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libhdf5-hl-100:arm64. 225s Preparing to unpack .../11-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 225s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 225s Selecting previously unselected package libjs-jquery. 225s Preparing to unpack .../12-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 225s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 225s Selecting previously unselected package libjs-underscore. 225s Preparing to unpack .../13-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 225s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 225s Selecting previously unselected package libjs-sphinxdoc. 225s Preparing to unpack .../14-libjs-sphinxdoc_7.2.6-4_all.deb ... 225s Unpacking libjs-sphinxdoc (7.2.6-4) ... 225s Selecting previously unselected package liblapack3:arm64. 225s Preparing to unpack .../15-liblapack3_3.12.0-3_arm64.deb ... 225s Unpacking liblapack3:arm64 (3.12.0-3) ... 225s Selecting previously unselected package liblzf1:arm64. 225s Preparing to unpack .../16-liblzf1_3.6-4_arm64.deb ... 225s Unpacking liblzf1:arm64 (3.6-4) ... 225s Selecting previously unselected package python3-numpy. 225s Preparing to unpack .../17-python3-numpy_1%3a1.24.2-2_arm64.deb ... 225s Unpacking python3-numpy (1:1.24.2-2) ... 225s Selecting previously unselected package python3-h5py-serial. 225s Preparing to unpack .../18-python3-h5py-serial_3.10.0-1ubuntu1_arm64.deb ... 225s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 226s Selecting previously unselected package python3-h5py. 226s Preparing to unpack .../19-python3-h5py_3.10.0-1ubuntu1_all.deb ... 226s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 226s Selecting previously unselected package python3-watchdog. 226s Preparing to unpack .../20-python3-watchdog_3.0.0-1_all.deb ... 226s Unpacking python3-watchdog (3.0.0-1) ... 226s Selecting previously unselected package python3-picopore. 226s Preparing to unpack .../21-python3-picopore_1.2.0-3_all.deb ... 226s Unpacking python3-picopore (1.2.0-3) ... 226s Selecting previously unselected package picopore. 226s Preparing to unpack .../22-picopore_1.2.0-3_all.deb ... 226s Unpacking picopore (1.2.0-3) ... 226s Selecting previously unselected package python3-lib2to3. 226s Preparing to unpack .../23-python3-lib2to3_3.11.5-1_all.deb ... 226s Unpacking python3-lib2to3 (3.11.5-1) ... 226s Selecting previously unselected package python3-distutils. 226s Preparing to unpack .../24-python3-distutils_3.11.5-1_all.deb ... 226s Unpacking python3-distutils (3.11.5-1) ... 226s Selecting previously unselected package python3-all. 226s Preparing to unpack .../25-python3-all_3.12.1-0ubuntu2_arm64.deb ... 226s Unpacking python3-all (3.12.1-0ubuntu2) ... 226s Selecting previously unselected package autopkgtest-satdep. 226s Preparing to unpack .../26-1-autopkgtest-satdep.deb ... 226s Unpacking autopkgtest-satdep (0) ... 226s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 226s Setting up libaec0:arm64 (1.1.2-1) ... 226s Setting up libblas3:arm64 (3.12.0-3) ... 226s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 226s Setting up liblzf1:arm64 (3.6-4) ... 226s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 226s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 226s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 226s Setting up python3-lib2to3 (3.11.5-1) ... 227s Setting up libsz2:arm64 (1.1.2-1) ... 227s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 227s Setting up python3-distutils (3.11.5-1) ... 227s python3.12: can't get files for byte-compilation 227s Setting up python3.11-minimal (3.11.8-1) ... 227s Setting up liblapack3:arm64 (3.12.0-3) ... 227s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 227s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 227s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 227s Setting up python3-all (3.12.1-0ubuntu2) ... 227s Setting up libjs-sphinxdoc (7.2.6-4) ... 227s Setting up curl (8.5.0-2ubuntu7) ... 227s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 227s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 227s Setting up python3.11 (3.11.8-1) ... 228s Setting up python3-watchdog (3.0.0-1) ... 228s Setting up hdf5-tools (1.10.10+repack-3.1ubuntu3) ... 228s Setting up python3-numpy (1:1.24.2-2) ... 230s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 231s Setting up python3-h5py (3.10.0-1ubuntu1) ... 231s Setting up python3-picopore (1.2.0-3) ... 231s Setting up picopore (1.2.0-3) ... 231s Setting up autopkgtest-satdep (0) ... 231s Processing triggers for systemd (255.2-3ubuntu2) ... 231s Processing triggers for man-db (2.12.0-3) ... 231s Processing triggers for libc-bin (2.39-0ubuntu2) ... 236s (Reading database ... 77081 files and directories currently installed.) 236s Removing autopkgtest-satdep (0) ... 236s autopkgtest [17:07:56]: test run-unit-test: [----------------------- 237s Performing lossless compression on 1 files... 238s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 238s .Complete. 238s Original size: 673522 238s Compressed size: 673522 238s Performing lossless decompression on 1 files... 238s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 238s .Complete. 238s Compressed size: 673522 238s Reverted size: 1347044 238s Checking equivalence of /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 238s Complete with 0 errors. 238s Performing lossless compression on 1 files... 238s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 238s .Complete. 238s Original size: 673522 238s Compressed size: 673522 238s Performing deep lossless compression on 1 files... 238s .Complete. 238s Original size: 673522 238s Compressed size: 629000 238s Performing deep lossless decompression on 1 files... 238s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 238s .Complete. 238s Compressed size: 629000 238s Reverted size: 1276128 238s Checking equivalence of /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 238s Complete with 0 errors. 239s Performing deep lossless compression on 1 files... 239s .Complete. 239s Original size: 673522 239s Compressed size: 629000 239s Performing raw compression with FASTQ and summary on 1 files... 239s .Complete. 239s Original size: 673522 239s Compressed size: 119182 239s Performing raw compression with summary and no FASTQ on 1 files... 239s .Complete. 239s Original size: 673522 239s Compressed size: 103635 239s Performing raw compression with FASTQ and no summary on 1 files... 240s .Complete. 240s Original size: 673522 240s Compressed size: 116766 240s Performing raw compression with no summary and no FASTQ on 1 files... 240s .Complete. 240s Original size: 673522 240s Compressed size: 98915 240s Performing raw compression with manual keyword Analyses on 1 files... 240s .Complete. 240s Original size: 673522 240s Compressed size: 98915 240s Performing lossless compression on 1 files... 241s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 241s .Complete. 241s Original size: 2003942 241s Compressed size: 2003942 241s Performing lossless decompression on 1 files... 241s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 241s .Complete. 241s Compressed size: 2003942 241s Reverted size: 4007884 241s Checking equivalence of /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 241s Complete with 0 errors. 241s Performing lossless compression on 1 files... 241s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 241s .Complete. 241s Original size: 2003942 241s Compressed size: 2003942 241s Performing deep lossless compression on 1 files... 241s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 241s .Complete. 241s Original size: 2003942 241s Compressed size: 2003942 241s Performing deep lossless decompression on 1 files... 241s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 241s .Complete. 241s Compressed size: 2003942 241s Reverted size: 4007884 241s Checking equivalence of /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 242s Complete with 0 errors. 242s Performing deep lossless compression on 1 files... 242s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 242s .Complete. 242s Original size: 2003942 242s Compressed size: 2003942 242s Performing raw compression with FASTQ and summary on 1 files... 242s .Complete. 242s Original size: 2003942 242s Compressed size: 270517 242s Performing raw compression with summary and no FASTQ on 1 files... 242s .Complete. 242s Original size: 2003942 242s Compressed size: 232978 243s Performing raw compression with FASTQ and no summary on 1 files... 243s .Complete. 243s Original size: 2003942 243s Compressed size: 261197 243s Performing raw compression with no summary and no FASTQ on 1 files... 243s .Complete. 243s Original size: 2003942 243s Compressed size: 219602 243s Performing raw compression with manual keyword Analyses on 1 files... 243s .Complete. 243s Original size: 2003942 243s Compressed size: 219602 244s Performing real time lossless compression... 244s Monitoring /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 244s No files found under /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime 253s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime/albacore_1d_original.fast5 263s .ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 274s . 274s Exiting Picopore. 274s Processing in-progress files. Press Ctrl-C again to abort. 274s Complete. 274s Original size: 2677464 274s Compressed size: 2677464 274s Performing real time deep lossless compression... 274s Monitoring /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 274s No files found under /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime 294s .ERROR: Unable to open file (truncated file: eof = 1069056, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 304s . 304s Exiting Picopore. 304s Processing in-progress files. Press Ctrl-C again to abort. 304s Complete. 304s Original size: 1070834 304s Compressed size: 2332936 304s Performing real time raw compression with FASTQ and summary... 304s Monitoring /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 304s No files found under /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime 324s .ERROR: Unable to open file (truncated file: eof = 638976, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 334s . 334s Exiting Picopore. 334s Processing in-progress files. Press Ctrl-C again to abort. 334s Complete. 334s Original size: 804594 334s Compressed size: 1888654 335s Performing real time raw compression with summary and no FASTQ... 335s Monitoring /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 335s No files found under /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime 365s .. 365s Exiting Picopore. 365s Processing in-progress files. Press Ctrl-C again to abort. 365s Complete. 365s Original size: 2677464 365s Compressed size: 336613 365s Performing real time raw compression with FASTQ and no summary... 365s Monitoring /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 365s No files found under /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime 385s .ERROR: Unable to open file (truncated file: eof = 1236992, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 395s . 395s Exiting Picopore. 395s Processing in-progress files. Press Ctrl-C again to abort. 395s Complete. 395s Original size: 1165042 395s Compressed size: 2120708 396s Performing real time raw compression with no summary and no FASTQ... 396s Monitoring /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 396s No files found under /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime 415s .ERROR: Unable to open file (truncated file: eof = 1265664, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 426s . 426s Exiting Picopore. 426s Processing in-progress files. Press Ctrl-C again to abort. 426s Complete. 426s Original size: 1206002 426s Compressed size: 2102857 426s Performing real time raw compression with manual keyword Analyses... 426s Monitoring /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 426s No files found under /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime 446s .ERROR: Unable to open file (truncated file: eof = 1150976, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.uchQ0I/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 456s . 456s Exiting Picopore. 456s Processing in-progress files. Press Ctrl-C again to abort. 456s Complete. 456s Original size: 1128178 456s Compressed size: 2102857 456s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/albacore_1d_original.fast5 456s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/metrichor_2d_original.fast5 456s python3 -m picopore -y --realtime --print-every 1 --mode lossless realtime 456s python3 -m picopore -y --realtime --print-every 1 --mode deep-lossless realtime 456s python3 -m picopore -y --realtime --print-every 1 --fastq --summary --mode raw realtime 456s python3 -m picopore -y --realtime --print-every 1 --summary --no-fastq --mode raw realtime 456s python3 -m picopore -y --realtime --print-every 1 --fastq --no-summary --mode raw realtime 456s python3 -m picopore -y --realtime --print-every 1 --no-fastq --no-summary --mode raw realtime 456s python3 -m picopore -y --realtime --print-every 1 --manual Analyses --mode raw realtime 456s PASS 456s autopkgtest [17:11:36]: test run-unit-test: -----------------------] 457s run-unit-test PASS 457s autopkgtest [17:11:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 457s autopkgtest [17:11:37]: test autodep8-python3: preparing testbed 553s autopkgtest [17:13:13]: testbed dpkg architecture: arm64 553s autopkgtest [17:13:13]: testbed apt version: 2.7.12 553s autopkgtest [17:13:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 554s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 554s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 554s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 554s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 554s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 554s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 554s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 554s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 554s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 554s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 555s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 555s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 555s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 556s Fetched 9063 kB in 2s (5626 kB/s) 556s Reading package lists... 559s Reading package lists... 559s Building dependency tree... 559s Reading state information... 559s Calculating upgrade... 560s The following packages will be REMOVED: 560s libssl3 560s The following NEW packages will be installed: 560s libssl3t64 560s The following packages have been kept back: 560s curl 560s The following packages will be upgraded: 560s openssl ubuntu-minimal ubuntu-standard 560s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 560s Need to get 2775 kB of archives. 560s After this operation, 72.7 kB of additional disk space will be used. 560s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 561s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 561s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 561s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 561s Fetched 2775 kB in 1s (3804 kB/s) 561s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 561s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 561s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 562s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 562s wget depends on libssl3 (>= 3.0.0). 562s u-boot-tools depends on libssl3 (>= 3.0.0). 562s tnftp depends on libssl3 (>= 3.0.0). 562s tcpdump depends on libssl3 (>= 3.0.0). 562s systemd-resolved depends on libssl3 (>= 3.0.0). 562s systemd depends on libssl3 (>= 3.0.0). 562s sudo depends on libssl3 (>= 3.0.0). 562s sbsigntool depends on libssl3 (>= 3.0.0). 562s rsync depends on libssl3 (>= 3.0.0). 562s python3-cryptography depends on libssl3 (>= 3.0.0). 562s openssh-server depends on libssl3 (>= 3.0.10). 562s openssh-client depends on libssl3 (>= 3.0.10). 562s mtd-utils depends on libssl3 (>= 3.0.0). 562s mokutil depends on libssl3 (>= 3.0.0). 562s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 562s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 562s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 562s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 562s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 562s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 562s libnvme1 depends on libssl3 (>= 3.0.0). 562s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 562s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 562s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 562s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 562s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 562s kmod depends on libssl3 (>= 3.0.0). 562s dhcpcd-base depends on libssl3 (>= 3.0.0). 562s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 562s 562s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 562s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 562s Selecting previously unselected package libssl3t64:arm64. 562s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 562s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 562s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 562s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 562s Unpacking ubuntu-minimal (1.536) over (1.535) ... 562s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 562s Unpacking ubuntu-standard (1.536) over (1.535) ... 562s Setting up ubuntu-minimal (1.536) ... 562s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 562s Setting up ubuntu-standard (1.536) ... 562s Setting up openssl (3.0.13-0ubuntu1) ... 562s Processing triggers for man-db (2.12.0-3) ... 563s Processing triggers for libc-bin (2.39-0ubuntu2) ... 563s Reading package lists... 563s Building dependency tree... 563s Reading state information... 564s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 565s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 565s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 565s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 565s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 566s Reading package lists... 566s Reading package lists... 566s Building dependency tree... 566s Reading state information... 567s Calculating upgrade... 567s The following packages have been kept back: 567s curl 567s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 567s Reading package lists... 568s Building dependency tree... 568s Reading state information... 568s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 573s Reading package lists... 574s Building dependency tree... 574s Reading state information... 574s Starting pkgProblemResolver with broken count: 0 574s Starting 2 pkgProblemResolver with broken count: 0 574s Done 574s The following additional packages will be installed: 574s curl hdf5-tools libaec0 libblas3 libcurl4t64 libgfortran5 libhdf5-103-1t64 574s libhdf5-hl-100 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 574s liblzf1 libpsl5t64 libpython3.11-minimal libpython3.11-stdlib libsz2 574s python3-all python3-distutils python3-h5py python3-h5py-serial 574s python3-lib2to3 python3-numpy python3-picopore python3-watchdog python3.11 574s python3.11-minimal 574s Suggested packages: 574s python-h5py-doc gcc gfortran python3-dev python3-pytest python3.11-venv 574s python3.11-doc binfmt-support 574s Recommended packages: 574s javascript-common 574s The following packages will be REMOVED: 574s libcurl4 libpsl5 574s The following NEW packages will be installed: 574s autopkgtest-satdep hdf5-tools libaec0 libblas3 libcurl4t64 libgfortran5 574s libhdf5-103-1t64 libhdf5-hl-100 libjs-jquery libjs-sphinxdoc 574s libjs-underscore liblapack3 liblzf1 libpsl5t64 libpython3.11-minimal 574s libpython3.11-stdlib libsz2 python3-all python3-distutils python3-h5py 574s python3-h5py-serial python3-lib2to3 python3-numpy python3-picopore 574s python3-watchdog python3.11 python3.11-minimal 574s The following packages will be upgraded: 574s curl 575s 1 upgraded, 27 newly installed, 2 to remove and 0 not upgraded. 575s Need to get 17.5 MB/17.5 MB of archives. 575s After this operation, 76.7 MB of additional disk space will be used. 575s Get:1 /tmp/autopkgtest.uchQ0I/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 575s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 575s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 575s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 575s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 575s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 575s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 575s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 575s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 575s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 575s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [1192 kB] 575s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 hdf5-tools arm64 1.10.10+repack-3.1ubuntu3 [315 kB] 575s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 575s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 575s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 575s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 575s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 575s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 575s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 575s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 575s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] 575s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] 575s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 575s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 576s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu1 [1462 kB] 576s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 576s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-watchdog all 3.0.0-1 [121 kB] 576s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-picopore all 1.2.0-3 [15.6 kB] 576s Fetched 17.5 MB in 1s (17.0 MB/s) 576s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 576s wget depends on libpsl5 (>= 0.16.0). 576s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 576s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 576s 576s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 576s Removing libpsl5:arm64 (0.21.2-1build1) ... 576s Selecting previously unselected package libpsl5t64:arm64. 576s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 576s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 576s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 576s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 576s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 576s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 576s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 576s Selecting previously unselected package libcurl4t64:arm64. 576s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 576s Preparing to unpack .../00-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 576s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 576s Selecting previously unselected package libpython3.11-minimal:arm64. 576s Preparing to unpack .../01-libpython3.11-minimal_3.11.8-1_arm64.deb ... 576s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 576s Selecting previously unselected package python3.11-minimal. 577s Preparing to unpack .../02-python3.11-minimal_3.11.8-1_arm64.deb ... 577s Unpacking python3.11-minimal (3.11.8-1) ... 577s Selecting previously unselected package libpython3.11-stdlib:arm64. 577s Preparing to unpack .../03-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 577s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 577s Selecting previously unselected package python3.11. 577s Preparing to unpack .../04-python3.11_3.11.8-1_arm64.deb ... 577s Unpacking python3.11 (3.11.8-1) ... 577s Selecting previously unselected package libaec0:arm64. 577s Preparing to unpack .../05-libaec0_1.1.2-1_arm64.deb ... 577s Unpacking libaec0:arm64 (1.1.2-1) ... 577s Selecting previously unselected package libsz2:arm64. 577s Preparing to unpack .../06-libsz2_1.1.2-1_arm64.deb ... 577s Unpacking libsz2:arm64 (1.1.2-1) ... 577s Selecting previously unselected package libhdf5-103-1t64:arm64. 577s Preparing to unpack .../07-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 577s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 577s Selecting previously unselected package hdf5-tools. 577s Preparing to unpack .../08-hdf5-tools_1.10.10+repack-3.1ubuntu3_arm64.deb ... 577s Unpacking hdf5-tools (1.10.10+repack-3.1ubuntu3) ... 577s Selecting previously unselected package libblas3:arm64. 577s Preparing to unpack .../09-libblas3_3.12.0-3_arm64.deb ... 577s Unpacking libblas3:arm64 (3.12.0-3) ... 577s Selecting previously unselected package libgfortran5:arm64. 577s Preparing to unpack .../10-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 577s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 577s Selecting previously unselected package libhdf5-hl-100:arm64. 577s Preparing to unpack .../11-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 577s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 577s Selecting previously unselected package libjs-jquery. 577s Preparing to unpack .../12-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 577s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 577s Selecting previously unselected package libjs-underscore. 577s Preparing to unpack .../13-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 577s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 577s Selecting previously unselected package libjs-sphinxdoc. 578s Preparing to unpack .../14-libjs-sphinxdoc_7.2.6-4_all.deb ... 578s Unpacking libjs-sphinxdoc (7.2.6-4) ... 578s Selecting previously unselected package liblapack3:arm64. 578s Preparing to unpack .../15-liblapack3_3.12.0-3_arm64.deb ... 578s Unpacking liblapack3:arm64 (3.12.0-3) ... 578s Selecting previously unselected package liblzf1:arm64. 578s Preparing to unpack .../16-liblzf1_3.6-4_arm64.deb ... 578s Unpacking liblzf1:arm64 (3.6-4) ... 578s Selecting previously unselected package python3-lib2to3. 578s Preparing to unpack .../17-python3-lib2to3_3.11.5-1_all.deb ... 578s Unpacking python3-lib2to3 (3.11.5-1) ... 578s Selecting previously unselected package python3-distutils. 578s Preparing to unpack .../18-python3-distutils_3.11.5-1_all.deb ... 578s Unpacking python3-distutils (3.11.5-1) ... 578s Selecting previously unselected package python3-all. 578s Preparing to unpack .../19-python3-all_3.12.1-0ubuntu2_arm64.deb ... 578s Unpacking python3-all (3.12.1-0ubuntu2) ... 578s Selecting previously unselected package python3-numpy. 578s Preparing to unpack .../20-python3-numpy_1%3a1.24.2-2_arm64.deb ... 578s Unpacking python3-numpy (1:1.24.2-2) ... 578s Selecting previously unselected package python3-h5py-serial. 578s Preparing to unpack .../21-python3-h5py-serial_3.10.0-1ubuntu1_arm64.deb ... 578s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 578s Selecting previously unselected package python3-h5py. 578s Preparing to unpack .../22-python3-h5py_3.10.0-1ubuntu1_all.deb ... 578s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 578s Selecting previously unselected package python3-watchdog. 578s Preparing to unpack .../23-python3-watchdog_3.0.0-1_all.deb ... 578s Unpacking python3-watchdog (3.0.0-1) ... 578s Selecting previously unselected package python3-picopore. 578s Preparing to unpack .../24-python3-picopore_1.2.0-3_all.deb ... 578s Unpacking python3-picopore (1.2.0-3) ... 578s Selecting previously unselected package autopkgtest-satdep. 578s Preparing to unpack .../25-2-autopkgtest-satdep.deb ... 578s Unpacking autopkgtest-satdep (0) ... 578s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 578s Setting up libaec0:arm64 (1.1.2-1) ... 578s Setting up libblas3:arm64 (3.12.0-3) ... 578s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 578s Setting up liblzf1:arm64 (3.6-4) ... 578s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 578s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 578s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 578s Setting up python3-lib2to3 (3.11.5-1) ... 579s Setting up libsz2:arm64 (1.1.2-1) ... 579s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 579s Setting up python3-distutils (3.11.5-1) ... 579s python3.12: can't get files for byte-compilation 579s Setting up python3.11-minimal (3.11.8-1) ... 579s Setting up liblapack3:arm64 (3.12.0-3) ... 579s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 579s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 579s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 579s Setting up python3-all (3.12.1-0ubuntu2) ... 579s Setting up libjs-sphinxdoc (7.2.6-4) ... 579s Setting up curl (8.5.0-2ubuntu7) ... 579s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 579s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 579s Setting up python3.11 (3.11.8-1) ... 580s Setting up python3-watchdog (3.0.0-1) ... 580s Setting up hdf5-tools (1.10.10+repack-3.1ubuntu3) ... 580s Setting up python3-numpy (1:1.24.2-2) ... 582s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 582s Setting up python3-h5py (3.10.0-1ubuntu1) ... 582s Setting up python3-picopore (1.2.0-3) ... 582s Setting up autopkgtest-satdep (0) ... 582s Processing triggers for systemd (255.2-3ubuntu2) ... 582s Processing triggers for man-db (2.12.0-3) ... 583s Processing triggers for libc-bin (2.39-0ubuntu2) ... 587s (Reading database ... 77069 files and directories currently installed.) 587s Removing autopkgtest-satdep (0) ... 589s autopkgtest [17:13:49]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import picopore; print(picopore)" ; done 589s autopkgtest [17:13:49]: test autodep8-python3: [----------------------- 589s Testing with python3.12: 590s 590s autopkgtest [17:13:50]: test autodep8-python3: -----------------------] 590s autopkgtest [17:13:50]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 590s autodep8-python3 PASS (superficial) 591s autopkgtest [17:13:51]: @@@@@@@@@@@@@@@@@@@@ summary 591s run-unit-test PASS 591s autodep8-python3 PASS (superficial) 602s Creating nova instance adt-noble-arm64-picopore-20240316-170400-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)... 602s Creating nova instance adt-noble-arm64-picopore-20240316-170400-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...