0s autopkgtest [16:28:53]: starting date and time: 2024-03-19 16:28:53+0000 0s autopkgtest [16:28:53]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [16:28:53]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yimmxlfs/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:phylip --apt-upgrade phylip --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=phylip/1:3.697+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-16.secgroup --name adt-noble-arm64-phylip-20240319-162852-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 292s autopkgtest [16:33:44]: testbed dpkg architecture: arm64 292s autopkgtest [16:33:45]: testbed apt version: 2.7.12 292s autopkgtest [16:33:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 292s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 292s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3784 kB] 293s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB] 293s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 293s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [486 kB] 293s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [657 kB] 293s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 293s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 293s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 293s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4146 kB] 293s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 293s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [56.7 kB] 293s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 296s Fetched 9351 kB in 2s (5669 kB/s) 296s Reading package lists... 300s Reading package lists... 300s Building dependency tree... 300s Reading state information... 301s Calculating upgrade... 301s The following packages will be upgraded: 301s ubuntu-minimal ubuntu-standard 301s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 301s Need to get 21.5 kB of archives. 301s After this operation, 0 B of additional disk space will be used. 301s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536build1 [10.7 kB] 301s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536build1 [10.7 kB] 302s Fetched 21.5 kB in 0s (93.8 kB/s) 302s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 302s Preparing to unpack .../ubuntu-minimal_1.536build1_arm64.deb ... 302s Unpacking ubuntu-minimal (1.536build1) over (1.536) ... 302s Preparing to unpack .../ubuntu-standard_1.536build1_arm64.deb ... 302s Unpacking ubuntu-standard (1.536build1) over (1.536) ... 302s Setting up ubuntu-minimal (1.536build1) ... 302s Setting up ubuntu-standard (1.536build1) ... 302s Reading package lists... 303s Building dependency tree... 303s Reading state information... 303s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 304s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 304s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 304s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 304s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 305s Reading package lists... 305s Reading package lists... 306s Building dependency tree... 306s Reading state information... 306s Calculating upgrade... 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 312s autopkgtest [16:34:05]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 312s autopkgtest [16:34:05]: @@@@@@@@@@@@@@@@@@@@ apt-source phylip 316s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe phylip 1:3.697+dfsg-4 (dsc) [2298 B] 316s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe phylip 1:3.697+dfsg-4 (tar) [1163 kB] 316s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe phylip 1:3.697+dfsg-4 (diff) [13.8 kB] 316s gpgv: Signature made Sat Mar 16 18:49:22 2024 UTC 316s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 316s gpgv: issuer "emollier@debian.org" 316s gpgv: Can't check signature: No public key 316s dpkg-source: warning: cannot verify inline signature for ./phylip_3.697+dfsg-4.dsc: no acceptable signature found 317s autopkgtest [16:34:10]: testing package phylip version 1:3.697+dfsg-4 318s autopkgtest [16:34:11]: build not needed 356s autopkgtest [16:34:49]: test run-unit-test: preparing testbed 362s Reading package lists... 362s Building dependency tree... 362s Reading state information... 362s Starting pkgProblemResolver with broken count: 0 362s Starting 2 pkgProblemResolver with broken count: 0 362s Done 363s The following additional packages will be installed: 363s phylip phylip-doc 363s The following NEW packages will be installed: 363s autopkgtest-satdep phylip phylip-doc 364s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 364s Need to get 1313 kB/1314 kB of archives. 364s After this operation, 5034 kB of additional disk space will be used. 364s Get:1 /tmp/autopkgtest.59Y6kc/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 364s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 phylip arm64 1:3.697+dfsg-4 [843 kB] 364s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 phylip-doc all 1:3.697+dfsg-4 [470 kB] 365s Fetched 1313 kB in 1s (1688 kB/s) 365s Selecting previously unselected package phylip. 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 365s Preparing to unpack .../phylip_1%3a3.697+dfsg-4_arm64.deb ... 365s Unpacking phylip (1:3.697+dfsg-4) ... 365s Selecting previously unselected package phylip-doc. 365s Preparing to unpack .../phylip-doc_1%3a3.697+dfsg-4_all.deb ... 365s Unpacking phylip-doc (1:3.697+dfsg-4) ... 365s Selecting previously unselected package autopkgtest-satdep. 365s Preparing to unpack .../1-autopkgtest-satdep.deb ... 365s Unpacking autopkgtest-satdep (0) ... 365s Setting up phylip (1:3.697+dfsg-4) ... 365s Setting up phylip-doc (1:3.697+dfsg-4) ... 365s Setting up autopkgtest-satdep (0) ... 365s Processing triggers for man-db (2.12.0-3) ... 366s Processing triggers for libc-bin (2.39-0ubuntu2) ... 369s (Reading database ... 74888 files and directories currently installed.) 369s Removing autopkgtest-satdep (0) ... 370s autopkgtest [16:35:03]: test run-unit-test: [----------------------- 370s rm -f infile 370s ln -s dna.data infile 370s make testprog PROGRAM=dnapars 370s make[1]: Entering directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s echo 0 > params 370s echo y >> params 370s phylip dnapars < params > dnapars.out 370s rm -f outtree outfile 370s make[1]: Leaving directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s make testprog PROGRAM=dnaml 370s make[1]: Entering directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s echo 0 > params 370s echo y >> params 370s phylip dnaml < params > dnaml.out 370s rm -f outtree outfile 370s make[1]: Leaving directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s make testprog PROGRAM=dnadist 370s make[1]: Entering directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s echo 0 > params 370s echo y >> params 370s phylip dnadist < params > dnadist.out 370s rm -f outtree outfile 370s make[1]: Leaving directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s rm -f infile 370s ln -s prot.data infile 370s make testprog PROGRAM=protpars 370s make[1]: Entering directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s echo 0 > params 370s echo y >> params 370s phylip protpars < params > protpars.out 370s rm -f outtree outfile 370s make[1]: Leaving directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s make testprog PROGRAM=protdist 370s make[1]: Entering directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s echo 0 > params 370s echo y >> params 370s phylip protdist < params > protdist.out 370s rm -f outtree outfile 370s make[1]: Leaving directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 370s rm -f infile 370s ln -s distance.data infile 370s make testprog PROGRAM=neighbor 371s make[1]: Entering directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 371s echo 0 > params 371s echo y >> params 371s phylip neighbor < params > neighbor.out 371s rm -f outtree outfile 371s make[1]: Leaving directory '/tmp/autopkgtest.59Y6kc/autopkgtest_tmp/tests' 371s rm -f intree 371s ln -s tree.data intree 371s echo 0 > params 371s echo l >> params 371s echo m >> params 371s echo y >> params 371s echo r >> params 371s phylip drawtree < params > drawtree.out 371s phylip drawgram < params > drawgram.out 371s PASS 371s autopkgtest [16:35:04]: test run-unit-test: -----------------------] 372s run-unit-test PASS 372s autopkgtest [16:35:05]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 372s autopkgtest [16:35:05]: @@@@@@@@@@@@@@@@@@@@ summary 372s run-unit-test PASS 378s Creating nova instance adt-noble-arm64-phylip-20240319-162852-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240319.img (UUID 821fd622-e452-4ae8-b5c8-959e73b1612a)...