0s autopkgtest [15:39:09]: starting date and time: 2024-03-18 15:39:09+0000 0s autopkgtest [15:39:09]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [15:39:09]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.91h11hva/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:openssl --apt-upgrade pbbam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=openssl/3.0.13-0ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-44.secgroup --name adt-noble-arm64-pbbam-20240318-153908-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 295s autopkgtest [15:44:04]: testbed dpkg architecture: arm64 295s autopkgtest [15:44:04]: testbed apt version: 2.7.12 295s autopkgtest [15:44:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 296s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 297s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3728 kB] 298s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.0 kB] 298s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 298s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 298s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [654 kB] 298s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 298s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 298s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 298s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4102 kB] 299s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 299s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 299s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 301s Fetched 9246 kB in 3s (2825 kB/s) 301s Reading package lists... 304s Reading package lists... 304s Building dependency tree... 304s Reading state information... 304s Calculating upgrade... 305s The following packages will be REMOVED: 305s libssl3 305s The following NEW packages will be installed: 305s libssl3t64 305s The following packages will be upgraded: 305s openssl 305s 1 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 305s Need to get 2777 kB of archives. 305s After this operation, 139 kB of additional disk space will be used. 305s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 305s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 306s Fetched 2777 kB in 1s (3159 kB/s) 306s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 306s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 306s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 306s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 306s wget depends on libssl3 (>= 3.0.0). 306s u-boot-tools depends on libssl3 (>= 3.0.0). 306s tnftp depends on libssl3 (>= 3.0.0). 306s tcpdump depends on libssl3 (>= 3.0.0). 306s systemd-resolved depends on libssl3 (>= 3.0.0). 306s systemd depends on libssl3 (>= 3.0.0). 306s sudo depends on libssl3 (>= 3.0.0). 306s sbsigntool depends on libssl3 (>= 3.0.0). 306s rsync depends on libssl3 (>= 3.0.0). 306s python3-cryptography depends on libssl3 (>= 3.0.0). 306s openssh-server depends on libssl3 (>= 3.0.10). 306s openssh-client depends on libssl3 (>= 3.0.10). 306s mtd-utils depends on libssl3 (>= 3.0.0). 306s mokutil depends on libssl3 (>= 3.0.0). 306s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 306s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 306s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 306s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 306s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 306s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 306s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 306s libnvme1 depends on libssl3 (>= 3.0.0). 306s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 306s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 306s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 306s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 306s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 306s kmod depends on libssl3 (>= 3.0.0). 306s dhcpcd-base depends on libssl3 (>= 3.0.0). 306s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 306s 306s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 306s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 306s Selecting previously unselected package libssl3t64:arm64. 306s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 306s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 306s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 306s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 306s Setting up openssl (3.0.13-0ubuntu2) ... 306s Processing triggers for man-db (2.12.0-3) ... 307s Processing triggers for libc-bin (2.39-0ubuntu2) ... 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 308s sh: Attempting to set up Debian/Ubuntu apt sources automatically 308s sh: Distribution appears to be Ubuntu 309s Reading package lists... 309s Building dependency tree... 309s Reading state information... 309s eatmydata is already the newest version (131-1). 309s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 309s Reading package lists... 310s Building dependency tree... 310s Reading state information... 310s dbus is already the newest version (1.14.10-4ubuntu1). 310s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 310s Reading package lists... 310s Building dependency tree... 310s Reading state information... 311s rng-tools-debian is already the newest version (2.4). 311s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 311s Reading package lists... 311s Building dependency tree... 311s Reading state information... 311s The following packages will be REMOVED: 311s cloud-init* python3-configobj* python3-debconf* 312s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 312s After this operation, 3252 kB disk space will be freed. 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 312s Removing cloud-init (24.1.1-0ubuntu1) ... 312s Removing python3-configobj (5.0.8-3) ... 312s Removing python3-debconf (1.5.86) ... 312s Processing triggers for man-db (2.12.0-3) ... 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75463 files and directories currently installed.) 312s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 313s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 313s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 313s invoke-rc.d: policy-rc.d denied execution of try-restart. 313s Reading package lists... 313s Building dependency tree... 313s Reading state information... 314s linux-generic is already the newest version (6.8.0-11.11+1). 314s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 314s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 314s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 314s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 316s Reading package lists... 316s Reading package lists... 316s Building dependency tree... 316s Reading state information... 317s Calculating upgrade... 317s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 317s Reading package lists... 317s Building dependency tree... 317s Reading state information... 318s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 318s autopkgtest [15:44:27]: rebooting testbed after setup commands that affected boot 471s autopkgtest [15:47:00]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 473s autopkgtest [15:47:02]: @@@@@@@@@@@@@@@@@@@@ apt-source pbbam 477s Get:1 http://ftpmaster.internal/ubuntu noble/universe pbbam 2.4.0+dfsg-1build1 (dsc) [2320 B] 477s Get:2 http://ftpmaster.internal/ubuntu noble/universe pbbam 2.4.0+dfsg-1build1 (tar) [7826 kB] 477s Get:3 http://ftpmaster.internal/ubuntu noble/universe pbbam 2.4.0+dfsg-1build1 (diff) [9060 B] 477s gpgv: Signature made Sun Feb 18 18:22:10 2024 UTC 477s gpgv: using RSA key 4D0BE12F0E4776D8AACE9696E66C775AEBFE6C7D 477s gpgv: Can't check signature: No public key 477s dpkg-source: warning: cannot verify inline signature for ./pbbam_2.4.0+dfsg-1build1.dsc: no acceptable signature found 477s autopkgtest [15:47:06]: testing package pbbam version 2.4.0+dfsg-1build1 477s autopkgtest [15:47:06]: build not needed 478s autopkgtest [15:47:07]: test command1: preparing testbed 485s Reading package lists... 485s Building dependency tree... 485s Reading state information... 485s Starting pkgProblemResolver with broken count: 1 485s Starting 2 pkgProblemResolver with broken count: 1 485s Investigating (0) libssl3t64:arm64 < 3.0.13-0ubuntu2 @ii mK Ib > 485s Broken libssl3t64:arm64 Breaks on libssl3:arm64 < none -> 3.0.10-1ubuntu4 @un pumN > (< 3.0.13-0ubuntu2) 485s Considering libssl3:arm64 160 as a solution to libssl3t64:arm64 156 485s Removing libssl3t64:arm64 rather than change libssl3:arm64 485s Investigating (0) openssl:arm64 < 3.0.13-0ubuntu2 @ii mK Ib > 485s Broken openssl:arm64 Depends on libssl3t64:arm64 < 3.0.13-0ubuntu2 @ii mR > (>= 3.0.9) 485s Considering libssl3t64:arm64 156 as a solution to openssl:arm64 13 485s Removing openssl:arm64 rather than change libssl3t64:arm64 485s Investigating (1) ca-certificates:arm64 < 20240203 @ii mK Ib > 485s Broken ca-certificates:arm64 Depends on openssl:arm64 < 3.0.13-0ubuntu2 @ii mR > (>= 1.1.1) 485s Considering openssl:arm64 13 as a solution to ca-certificates:arm64 144 485s Added openssl:arm64 to the remove list 485s Fixing ca-certificates:arm64 via keep of openssl:arm64 485s Investigating (1) openssl:arm64 < 3.0.13-0ubuntu2 @ii mK Ib > 485s Broken openssl:arm64 Depends on libssl3t64:arm64 < 3.0.13-0ubuntu2 @ii mR > (>= 3.0.9) 485s Considering libssl3t64:arm64 156 as a solution to openssl:arm64 13 485s Removing openssl:arm64 rather than change libssl3t64:arm64 485s Investigating (2) ca-certificates:arm64 < 20240203 @ii mK Ib > 485s Broken ca-certificates:arm64 Depends on openssl:arm64 < 3.0.13-0ubuntu2 @ii mR > (>= 1.1.1) 485s Considering openssl:arm64 13 as a solution to ca-certificates:arm64 144 485s Added openssl:arm64 to the remove list 485s Fixing ca-certificates:arm64 via keep of openssl:arm64 485s Investigating (2) openssl:arm64 < 3.0.13-0ubuntu2 @ii mK Ib > 485s Broken openssl:arm64 Depends on libssl3t64:arm64 < 3.0.13-0ubuntu2 @ii mR > (>= 3.0.9) 485s Considering libssl3t64:arm64 156 as a solution to openssl:arm64 144 485s Removing openssl:arm64 rather than change libssl3t64:arm64 485s Investigating (3) ca-certificates:arm64 < 20240203 @ii mK Ib > 485s Broken ca-certificates:arm64 Depends on openssl:arm64 < 3.0.13-0ubuntu2 @ii mR > (>= 1.1.1) 485s Considering openssl:arm64 156 as a solution to ca-certificates:arm64 144 485s Removing ca-certificates:arm64 rather than change openssl:arm64 485s Investigating (3) python3-httplib2:arm64 < 0.20.4-3 @ii mK Ib > 485s Broken python3-httplib2:arm64 Depends on ca-certificates:arm64 < 20240203 @ii mR > 485s Considering ca-certificates:arm64 156 as a solution to python3-httplib2:arm64 6 485s Removing python3-httplib2:arm64 rather than change ca-certificates:arm64 485s Investigating (3) python3-apport:arm64 < 2.28.0-0ubuntu1 @ii mK Ib > 485s Broken python3-apport:arm64 Depends on python3-httplib2:arm64 < 0.20.4-3 @ii mR > 485s Considering python3-httplib2:arm64 156 as a solution to python3-apport:arm64 4 485s Removing python3-apport:arm64 rather than change python3-httplib2:arm64 485s Investigating (3) ssh-import-id:arm64 < 5.11-0ubuntu2 @ii mK Ib > 485s Broken ssh-import-id:arm64 Depends on ca-certificates:arm64 < 20240203 @ii mR > 485s Considering ca-certificates:arm64 156 as a solution to ssh-import-id:arm64 3 485s Removing ssh-import-id:arm64 rather than change ca-certificates:arm64 485s Investigating (3) python3-lazr.restfulclient:arm64 < 0.14.6-1 @ii mK Ib > 485s Broken python3-lazr.restfulclient:arm64 Depends on python3-httplib2:arm64 < 0.20.4-3 @ii mR > (>= 0.7.7) 485s Considering python3-httplib2:arm64 156 as a solution to python3-lazr.restfulclient:arm64 2 485s Removing python3-lazr.restfulclient:arm64 rather than change python3-httplib2:arm64 485s Investigating (3) python3-launchpadlib:arm64 < 1.11.0-6 @ii mK Ib > 485s Broken python3-launchpadlib:arm64 Depends on python3-httplib2:arm64 < 0.20.4-3 @ii mR > 485s Considering python3-httplib2:arm64 156 as a solution to python3-launchpadlib:arm64 2 485s Removing python3-launchpadlib:arm64 rather than change python3-httplib2:arm64 485s Investigating (3) python3-requests:arm64 < 2.31.0+dfsg-1ubuntu1 @ii mK Ib > 485s Broken python3-requests:arm64 Depends on ca-certificates:arm64 < 20240203 @ii mR > 485s Considering ca-certificates:arm64 156 as a solution to python3-requests:arm64 2 485s Removing python3-requests:arm64 rather than change ca-certificates:arm64 485s Investigating (3) python3-certifi:arm64 < 2023.11.17-1 @ii mK Ib > 485s Broken python3-certifi:arm64 Depends on ca-certificates:arm64 < 20240203 @ii mR > 485s Considering ca-certificates:arm64 156 as a solution to python3-certifi:arm64 2 485s Removing python3-certifi:arm64 rather than change ca-certificates:arm64 485s Investigating (4) apport:arm64 < 2.28.0-0ubuntu1 @ii mK Ib > 485s Broken apport:arm64 Depends on python3-apport:arm64 < 2.28.0-0ubuntu1 @ii mR > (>= 2.28.0-0ubuntu1) 485s Considering python3-apport:arm64 156 as a solution to apport:arm64 6 485s Removing apport:arm64 rather than change python3-apport:arm64 485s Investigating (4) apport-core-dump-handler:arm64 < 2.28.0-0ubuntu1 @ii mK Ib > 485s Broken apport-core-dump-handler:arm64 Depends on apport:arm64 < 2.28.0-0ubuntu1 @ii mR > (>= 2.27.0-0ubuntu7~) 485s Considering apport:arm64 156 as a solution to apport-core-dump-handler:arm64 4 485s Removing apport-core-dump-handler:arm64 rather than change apport:arm64 485s Done 486s The following packages were automatically installed and are no longer required: 486s apport-symptoms python3-blinker python3-chardet python3-cryptography 486s python3-jwt python3-lazr.uri python3-oauthlib python3-openssl 486s python3-problem-report python3-pyparsing python3-six python3-systemd 486s python3-urllib3 python3-wadllib 486s Use 'sudo apt autoremove' to remove them. 486s The following additional packages will be installed: 486s autoconf automake autopoint autotools-dev build-essential cmake cmake-data 486s cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu d-shlibs debhelper 486s debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz g++ g++-13 486s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 486s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext googletest 486s intltool-debian libarchive-zip-perl libasan8 libatomic1 libboost-dev 486s libboost1.83-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 486s libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 486s libfile-stripnondeterminism-perl libgcc-13-dev libgomp1 libgtest-dev 486s libhts-dev libhts3 libhtscodecs2 libhwasan0 libisl23 libitm1 libjsoncpp25 486s liblsan0 liblzma-dev libmpc3 libnsl-dev libpbbam2.4.0 libpbcopper-dev 486s libpbcopper2.3.0 libpkgconf3 librhash0 libssl-dev libssl3 libstdc++-13-dev 486s libsub-override-perl libtirpc-dev libtool libtsan2 libubsan1 linux-libc-dev 486s m4 meson ninja-build pbbamtools pkg-config pkgconf pkgconf-bin po-debconf 486s python3-cram rpcsvc-proto samtools zlib1g-dev 486s Suggested packages: 486s autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format 486s elpa-cmake-mode cpp-doc gcc-13-locales cpp-13-doc dh-make gcc-13-doc 486s gcc-multilib manpages-dev flex bison gdb gcc-doc gdb-aarch64-linux-gnu 486s gettext-doc libasprintf-dev libgettextpo-dev libboost-doc libboost1.83-doc 486s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 486s libboost-context1.83-dev libboost-contract1.83-dev 486s libboost-coroutine1.83-dev libboost-date-time1.83-dev 486s libboost-exception1.83-dev libboost-fiber1.83-dev 486s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 486s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 486s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 486s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 486s libboost-numpy1.83-dev libboost-program-options1.83-dev 486s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 486s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 486s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 486s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 486s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 486s glibc-doc libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev 486s librtmp-dev libssh2-1-dev liblzma-doc libssl-doc libstdc++-13-doc 486s libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl 486s cwltool 486s Recommended packages: 486s manpages manpages-dev libc-devtools libarchive-cpio-perl libltdl-dev 486s libmail-sendmail-perl 486s The following packages will be REMOVED: 486s apport apport-core-dump-handler ca-certificates libssl3t64 openssl 486s python3-apport python3-certifi python3-httplib2 python3-launchpadlib 486s python3-lazr.restfulclient python3-requests ssh-import-id 486s The following NEW packages will be installed: 486s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 486s cmake cmake-data cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 486s d-shlibs debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism 486s dwz g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 486s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext googletest 486s intltool-debian libarchive-zip-perl libasan8 libatomic1 libboost-dev 486s libboost1.83-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 486s libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 486s libfile-stripnondeterminism-perl libgcc-13-dev libgomp1 libgtest-dev 486s libhts-dev libhts3 libhtscodecs2 libhwasan0 libisl23 libitm1 libjsoncpp25 486s liblsan0 liblzma-dev libmpc3 libnsl-dev libpbbam2.4.0 libpbcopper-dev 486s libpbcopper2.3.0 libpkgconf3 librhash0 libssl-dev libssl3 libstdc++-13-dev 486s libsub-override-perl libtirpc-dev libtool libtsan2 libubsan1 linux-libc-dev 486s m4 meson ninja-build pbbamtools pkg-config pkgconf pkgconf-bin po-debconf 486s python3-cram rpcsvc-proto samtools zlib1g-dev 486s 0 upgraded, 85 newly installed, 12 to remove and 0 not upgraded. 486s Need to get 111 MB/111 MB of archives. 486s After this operation, 488 MB of additional disk space will be used. 486s Get:1 /tmp/autopkgtest.CndkYO/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [836 B] 486s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libssl3 arm64 3.0.10-1ubuntu4 [1764 kB] 487s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB] 487s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] 487s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] 487s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 487s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 autopoint all 0.21-14ubuntu1 [422 kB] 487s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 487s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 487s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 487s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 487s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 487s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 487s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 487s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 487s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 487s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 488s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 488s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 488s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 488s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 488s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 488s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 488s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 488s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 488s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 488s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 489s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 489s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 489s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 489s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 490s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 490s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 490s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 490s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 490s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 491s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 491s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 491s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 491s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 491s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 491s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 librhash0 arm64 1.4.3-3 [125 kB] 491s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 cmake-data all 3.28.3-1 [2155 kB] 491s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 cmake arm64 3.28.3-1 [10.3 MB] 491s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 d-shlibs all 0.106 [11.2 kB] 491s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdebhelper-perl all 13.14.1ubuntu1 [89.5 kB] 491s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libtool all 2.4.7-7 [166 kB] 491s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 dh-autoreconf all 20 [16.1 kB] 491s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 491s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-override-perl all 0.10-1 [10.0 kB] 491s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] 491s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] 491s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1 arm64 0.190-1 [254 kB] 491s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] 491s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 dwz arm64 0.15-1 [110 kB] 491s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gettext arm64 0.21-14ubuntu1 [846 kB] 491s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 491s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 491s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 debhelper all 13.14.1ubuntu1 [869 kB] 492s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 googletest all 1.14.0-1 [521 kB] 492s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 492s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 492s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libcurl4-gnutls-dev arm64 8.5.0-2ubuntu2 [448 kB] 492s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 492s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate-dev arm64 1.19-1 [51.2 kB] 493s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 libgtest-dev arm64 1.14.0-1 [266 kB] 493s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 493s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 493s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 493s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 493s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts-dev arm64 1.18+ds-1 [5806 kB] 493s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 libpbcopper2.3.0 arm64 2.3.0+dfsg-2 [516 kB] 493s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libpbbam2.4.0 arm64 2.4.0+dfsg-1build1 [634 kB] 493s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libpbcopper-dev arm64 2.3.0+dfsg-2 [1089 kB] 493s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 493s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libssl-dev arm64 3.0.10-1ubuntu4 [2330 kB] 493s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 ninja-build arm64 1.11.1-2 [125 kB] 493s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 meson all 1.3.2-1ubuntu1 [604 kB] 493s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 pbbamtools arm64 2.4.0+dfsg-1build1 [104 kB] 493s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 493s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 493s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 493s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cram all 0.7-5 [17.9 kB] 493s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 samtools arm64 1.19.2-1 [584 kB] 493s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 dh-exec arm64 0.29 [25.6 kB] 494s Fetched 111 MB in 7s (15.2 MB/s) 494s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75408 files and directories currently installed.) 494s Removing ssh-import-id (5.11-0ubuntu2) ... 494s Removing apport-core-dump-handler (2.28.0-0ubuntu1) ... 494s Removing apport (2.28.0-0ubuntu1) ... 495s Removing python3-apport (2.28.0-0ubuntu1) ... 495s Removing python3-requests (2.31.0+dfsg-1ubuntu1) ... 495s dpkg: ca-certificates: dependency problems, but removing anyway as you requested: 495s python3-httplib2 depends on ca-certificates. 495s python3-certifi depends on ca-certificates. 495s 495s Removing ca-certificates (20240203) ... 495s Removing dangling symlinks from /etc/ssl/certs... done. 495s Removing openssl (3.0.13-0ubuntu2) ... 495s dpkg: libssl3t64:arm64: dependency problems, but removing anyway as you requested: 495s wget depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s u-boot-tools depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s tnftp depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s tcpdump depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s systemd-resolved depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s systemd depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s sudo depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s sbsigntool depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s rsync depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s python3-cryptography depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s openssh-server depends on libssl3 (>= 3.0.10); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s openssh-client depends on libssl3 (>= 3.0.10); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s mtd-utils depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s mokutil depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libssh-4:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libnvme1 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libkmod2:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libfido2-1:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libcurl4:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s kmod depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s dhcpcd-base depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s bind9-libs:arm64 depends on libssl3 (>= 3.0.0); however: 495s Package libssl3 is not installed. 495s Package libssl3t64:arm64 which provides libssl3 is to be removed. 495s 495s Removing libssl3t64:arm64 (3.0.13-0ubuntu2) ... 495s Selecting previously unselected package libssl3:arm64. 495s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 495s Preparing to unpack .../libssl3_3.0.10-1ubuntu4_arm64.deb ... 495s Unpacking libssl3:arm64 (3.0.10-1ubuntu4) ... 495s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 495s Removing python3-certifi (2023.11.17-1) ... 495s Removing python3-launchpadlib (1.11.0-6) ... 495s Removing python3-lazr.restfulclient (0.14.6-1) ... 495s Removing python3-httplib2 (0.20.4-3) ... 495s Selecting previously unselected package m4. 495s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74644 files and directories currently installed.) 495s Preparing to unpack .../00-m4_1.4.19-4_arm64.deb ... 495s Unpacking m4 (1.4.19-4) ... 495s Selecting previously unselected package autoconf. 495s Preparing to unpack .../01-autoconf_2.71-3_all.deb ... 495s Unpacking autoconf (2.71-3) ... 495s Selecting previously unselected package autotools-dev. 495s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ... 495s Unpacking autotools-dev (20220109.1) ... 495s Selecting previously unselected package automake. 495s Preparing to unpack .../03-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 495s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 496s Selecting previously unselected package autopoint. 496s Preparing to unpack .../04-autopoint_0.21-14ubuntu1_all.deb ... 496s Unpacking autopoint (0.21-14ubuntu1) ... 496s Selecting previously unselected package libc-dev-bin. 496s Preparing to unpack .../05-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 496s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 496s Selecting previously unselected package linux-libc-dev:arm64. 496s Preparing to unpack .../06-linux-libc-dev_6.8.0-11.11_arm64.deb ... 496s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 496s Selecting previously unselected package libcrypt-dev:arm64. 496s Preparing to unpack .../07-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 496s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 496s Selecting previously unselected package libtirpc-dev:arm64. 496s Preparing to unpack .../08-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 496s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 496s Selecting previously unselected package libnsl-dev:arm64. 496s Preparing to unpack .../09-libnsl-dev_1.3.0-3_arm64.deb ... 496s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 496s Selecting previously unselected package rpcsvc-proto. 496s Preparing to unpack .../10-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 496s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 496s Selecting previously unselected package libc6-dev:arm64. 496s Preparing to unpack .../11-libc6-dev_2.39-0ubuntu2_arm64.deb ... 496s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 496s Selecting previously unselected package libisl23:arm64. 496s Preparing to unpack .../12-libisl23_0.26-3_arm64.deb ... 496s Unpacking libisl23:arm64 (0.26-3) ... 496s Selecting previously unselected package libmpc3:arm64. 496s Preparing to unpack .../13-libmpc3_1.3.1-1_arm64.deb ... 496s Unpacking libmpc3:arm64 (1.3.1-1) ... 496s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 496s Preparing to unpack .../14-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 496s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 496s Selecting previously unselected package cpp-13. 496s Preparing to unpack .../15-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 496s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 496s Selecting previously unselected package cpp-aarch64-linux-gnu. 496s Preparing to unpack .../16-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 496s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 496s Selecting previously unselected package cpp. 496s Preparing to unpack .../17-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 496s Unpacking cpp (4:13.2.0-7ubuntu1) ... 496s Selecting previously unselected package libcc1-0:arm64. 496s Preparing to unpack .../18-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 496s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 496s Selecting previously unselected package libgomp1:arm64. 496s Preparing to unpack .../19-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 496s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 496s Selecting previously unselected package libitm1:arm64. 496s Preparing to unpack .../20-libitm1_14-20240303-1ubuntu1_arm64.deb ... 496s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 496s Selecting previously unselected package libatomic1:arm64. 496s Preparing to unpack .../21-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 496s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 496s Selecting previously unselected package libasan8:arm64. 496s Preparing to unpack .../22-libasan8_14-20240303-1ubuntu1_arm64.deb ... 496s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 496s Selecting previously unselected package liblsan0:arm64. 496s Preparing to unpack .../23-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 496s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 496s Selecting previously unselected package libtsan2:arm64. 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gcc-13. 497s Preparing to unpack .../29-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 497s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 497s Selecting previously unselected package gcc-aarch64-linux-gnu. 497s Preparing to unpack .../30-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 497s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 497s Selecting previously unselected package gcc. 497s Preparing to unpack .../31-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 497s Unpacking gcc (4:13.2.0-7ubuntu1) ... 497s Selecting previously unselected package libstdc++-13-dev:arm64. 497s Preparing to unpack .../32-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 497s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 497s Selecting previously unselected package g++-13-aarch64-linux-gnu. 497s Preparing to unpack .../33-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 497s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 498s Selecting previously unselected package g++-13. 498s 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librhash0:arm64 (1.4.3-3) ... 498s Selecting previously unselected package cmake-data. 498s Preparing to unpack .../40-cmake-data_3.28.3-1_all.deb ... 498s Unpacking cmake-data (3.28.3-1) ... 498s Selecting previously unselected package cmake. 498s Preparing to unpack .../41-cmake_3.28.3-1_arm64.deb ... 498s Unpacking cmake (3.28.3-1) ... 498s Selecting previously unselected package d-shlibs. 498s Preparing to unpack .../42-d-shlibs_0.106_all.deb ... 498s Unpacking d-shlibs (0.106) ... 498s Selecting previously unselected package libdebhelper-perl. 498s Preparing to unpack .../43-libdebhelper-perl_13.14.1ubuntu1_all.deb ... 498s Unpacking libdebhelper-perl (13.14.1ubuntu1) ... 498s Selecting previously unselected package libtool. 498s Preparing to unpack .../44-libtool_2.4.7-7_all.deb ... 498s Unpacking libtool (2.4.7-7) ... 498s Selecting previously unselected package dh-autoreconf. 498s Preparing to unpack .../45-dh-autoreconf_20_all.deb ... 498s Unpacking dh-autoreconf (20) ... 498s Selecting previously unselected package libarchive-zip-perl. 498s Preparing to unpack .../46-libarchive-zip-perl_1.68-1_all.deb ... 498s Unpacking libarchive-zip-perl (1.68-1) ... 498s Selecting previously unselected package libsub-override-perl. 498s Preparing to unpack .../47-libsub-override-perl_0.10-1_all.deb ... 498s Unpacking libsub-override-perl (0.10-1) ... 499s Selecting previously unselected package libfile-stripnondeterminism-perl. 499s Preparing to unpack .../48-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... 499s Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... 499s Selecting previously unselected package dh-strip-nondeterminism. 499s Preparing to unpack .../49-dh-strip-nondeterminism_1.13.1-1_all.deb ... 499s Unpacking dh-strip-nondeterminism (1.13.1-1) ... 499s Selecting previously unselected package libdw1:arm64. 499s Preparing to unpack .../50-libdw1_0.190-1_arm64.deb ... 499s Unpacking libdw1:arm64 (0.190-1) ... 499s Selecting previously unselected package debugedit. 499s Preparing to unpack .../51-debugedit_1%3a5.0-5_arm64.deb ... 499s Unpacking debugedit (1:5.0-5) ... 499s Selecting previously unselected package dwz. 499s Preparing to unpack .../52-dwz_0.15-1_arm64.deb ... 499s Unpacking dwz (0.15-1) ... 499s Selecting previously unselected package gettext. 499s Preparing to unpack .../53-gettext_0.21-14ubuntu1_arm64.deb ... 499s Unpacking gettext (0.21-14ubuntu1) ... 499s Selecting previously unselected package intltool-debian. 499s Preparing to unpack .../54-intltool-debian_0.35.0+20060710.6_all.deb ... 499s Unpacking intltool-debian (0.35.0+20060710.6) ... 499s Selecting previously unselected package po-debconf. 499s Preparing to unpack .../55-po-debconf_1.0.21+nmu1_all.deb ... 499s Unpacking po-debconf (1.0.21+nmu1) ... 499s Selecting previously unselected package debhelper. 499s Preparing to unpack .../56-debhelper_13.14.1ubuntu1_all.deb ... 499s Unpacking debhelper (13.14.1ubuntu1) ... 499s Selecting previously unselected package googletest. 499s Preparing to unpack .../57-googletest_1.14.0-1_all.deb ... 499s Unpacking googletest (1.14.0-1) ... 499s Selecting previously unselected package libboost1.83-dev:arm64. 499s Preparing to unpack .../58-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 499s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 501s Selecting previously unselected package libboost-dev:arm64. 501s Preparing to unpack .../59-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 501s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 501s Selecting previously unselected package libcurl4-gnutls-dev:arm64. 501s Preparing to unpack .../60-libcurl4-gnutls-dev_8.5.0-2ubuntu2_arm64.deb ... 501s Unpacking libcurl4-gnutls-dev:arm64 (8.5.0-2ubuntu2) ... 501s Selecting previously unselected package libdeflate0:arm64. 501s Preparing to unpack .../61-libdeflate0_1.19-1_arm64.deb ... 501s Unpacking libdeflate0:arm64 (1.19-1) ... 501s Selecting previously unselected package libdeflate-dev:arm64. 501s Preparing to unpack .../62-libdeflate-dev_1.19-1_arm64.deb ... 501s Unpacking libdeflate-dev:arm64 (1.19-1) ... 501s Selecting previously unselected package libgtest-dev:arm64. 501s Preparing to unpack .../63-libgtest-dev_1.14.0-1_arm64.deb ... 501s Unpacking libgtest-dev:arm64 (1.14.0-1) ... 501s Selecting previously unselected package libhtscodecs2:arm64. 501s Preparing to unpack .../64-libhtscodecs2_1.6.0-1_arm64.deb ... 501s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 501s Selecting previously unselected package libhts3:arm64. 501s Preparing to unpack .../65-libhts3_1.18+ds-1_arm64.deb ... 501s Unpacking libhts3:arm64 (1.18+ds-1) ... 501s Selecting previously unselected package liblzma-dev:arm64. 501s Preparing to unpack .../66-liblzma-dev_5.4.5-0.3_arm64.deb ... 501s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 501s Selecting previously unselected package zlib1g-dev:arm64. 501s Preparing to unpack .../67-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 501s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 501s Selecting previously unselected package libhts-dev:arm64. 501s Preparing to unpack .../68-libhts-dev_1.18+ds-1_arm64.deb ... 501s Unpacking libhts-dev:arm64 (1.18+ds-1) ... 501s Selecting previously unselected package libpbcopper2.3.0:arm64. 501s Preparing to unpack .../69-libpbcopper2.3.0_2.3.0+dfsg-2_arm64.deb ... 501s Unpacking libpbcopper2.3.0:arm64 (2.3.0+dfsg-2) ... 501s Selecting previously unselected package libpbbam2.4.0:arm64. 501s Preparing to unpack .../70-libpbbam2.4.0_2.4.0+dfsg-1build1_arm64.deb ... 501s Unpacking libpbbam2.4.0:arm64 (2.4.0+dfsg-1build1) ... 501s Selecting previously unselected package libpbcopper-dev:arm64. 501s Preparing to unpack .../71-libpbcopper-dev_2.3.0+dfsg-2_arm64.deb ... 501s Unpacking libpbcopper-dev:arm64 (2.3.0+dfsg-2) ... 501s Selecting previously unselected package libpkgconf3:arm64. 501s Preparing to unpack .../72-libpkgconf3_1.8.1-2_arm64.deb ... 501s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 501s Selecting previously unselected package libssl-dev:arm64. 501s Preparing to unpack .../73-libssl-dev_3.0.10-1ubuntu4_arm64.deb ... 501s Unpacking libssl-dev:arm64 (3.0.10-1ubuntu4) ... 501s Selecting previously unselected package ninja-build. 501s Preparing to unpack .../74-ninja-build_1.11.1-2_arm64.deb ... 501s Unpacking ninja-build (1.11.1-2) ... 501s Selecting previously unselected package meson. 501s Preparing to unpack .../75-meson_1.3.2-1ubuntu1_all.deb ... 501s Unpacking meson (1.3.2-1ubuntu1) ... 502s Selecting previously unselected package pbbamtools. 502s Preparing to unpack .../76-pbbamtools_2.4.0+dfsg-1build1_arm64.deb ... 502s Unpacking pbbamtools (2.4.0+dfsg-1build1) ... 502s Selecting previously unselected package pkgconf-bin. 502s Preparing to unpack .../77-pkgconf-bin_1.8.1-2_arm64.deb ... 502s Unpacking pkgconf-bin (1.8.1-2) ... 502s Selecting previously unselected package pkgconf:arm64. 502s Preparing to unpack .../78-pkgconf_1.8.1-2_arm64.deb ... 502s Unpacking pkgconf:arm64 (1.8.1-2) ... 502s Selecting previously unselected package pkg-config:arm64. 502s Preparing to unpack .../79-pkg-config_1.8.1-2_arm64.deb ... 502s Unpacking pkg-config:arm64 (1.8.1-2) ... 502s Selecting previously unselected package python3-cram. 502s Preparing to unpack .../80-python3-cram_0.7-5_all.deb ... 502s Unpacking python3-cram (0.7-5) ... 502s Selecting previously unselected package samtools. 502s Preparing to unpack .../81-samtools_1.19.2-1_arm64.deb ... 502s Unpacking samtools (1.19.2-1) ... 502s Selecting previously unselected package dh-exec. 502s Preparing to unpack .../82-dh-exec_0.29_arm64.deb ... 502s Unpacking dh-exec (0.29) ... 502s Selecting previously unselected package autopkgtest-satdep. 502s Preparing to unpack .../83-1-autopkgtest-satdep.deb ... 502s Unpacking autopkgtest-satdep (0) ... 502s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 502s Setting up libdw1:arm64 (0.190-1) ... 502s Setting up libarchive-zip-perl (1.68-1) ... 502s Setting up libdebhelper-perl (13.14.1ubuntu1) ... 502s Setting up libssl3:arm64 (3.0.10-1ubuntu4) ... 502s Setting up libdeflate0:arm64 (1.19-1) ... 502s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 502s Setting up m4 (1.4.19-4) ... 502s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 502s Setting up libcurl4-gnutls-dev:arm64 (8.5.0-2ubuntu2) ... 502s Setting up googletest (1.14.0-1) ... 502s Setting up ninja-build (1.11.1-2) ... 502s Setting up autotools-dev (20220109.1) ... 502s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 502s Setting up libpkgconf3:arm64 (1.8.1-2) ... 502s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 502s Setting up libssl-dev:arm64 (3.0.10-1ubuntu4) ... 502s Setting up libmpc3:arm64 (1.3.1-1) ... 502s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 502s Setting up autopoint (0.21-14ubuntu1) ... 502s Setting up libjsoncpp25:arm64 (1.9.5-6) ... 502s Setting up d-shlibs (0.106) ... 502s Setting up pkgconf-bin (1.8.1-2) ... 502s Setting up autoconf (2.71-3) ... 502s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 502s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 502s Setting up dwz (0.15-1) ... 502s Setting up libnsl-dev:arm64 (1.3.0-3) ... 502s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 502s Setting up librhash0:arm64 (1.4.3-3) ... 502s Setting up python3-cram (0.7-5) ... 502s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 502s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 502s Setting up debugedit (1:5.0-5) ... 502s Setting up libsub-override-perl (0.10-1) ... 502s Setting up cmake-data (3.28.3-1) ... 502s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 502s Setting up libisl23:arm64 (0.26-3) ... 502s Setting up libc-dev-bin (2.39-0ubuntu2) ... 502s Setting up libdeflate-dev:arm64 (1.19-1) ... 502s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 502s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 502s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 502s Setting up libpbcopper2.3.0:arm64 (2.3.0+dfsg-2) ... 502s Setting up automake (1:1.16.5-1.3ubuntu1) ... 502s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 502s Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... 502s Setting up libhts3:arm64 (1.18+ds-1) ... 502s Setting up gettext (0.21-14ubuntu1) ... 502s Setting up libgtest-dev:arm64 (1.14.0-1) ... 502s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 502s Setting up libpbbam2.4.0:arm64 (2.4.0+dfsg-1build1) ... 502s Setting up meson (1.3.2-1ubuntu1) ... 503s Setting up pkgconf:arm64 (1.8.1-2) ... 503s Setting up samtools (1.19.2-1) ... 503s Setting up intltool-debian (0.35.0+20060710.6) ... 503s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 503s Setting up pkg-config:arm64 (1.8.1-2) ... 503s Setting up libpbcopper-dev:arm64 (2.3.0+dfsg-2) ... 503s Setting up dh-strip-nondeterminism (1.13.1-1) ... 503s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 503s Setting up cmake (3.28.3-1) ... 503s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 503s Setting up pbbamtools (2.4.0+dfsg-1build1) ... 503s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 503s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 503s Setting up cpp-13 (13.2.0-17ubuntu2) ... 503s Setting up po-debconf (1.0.21+nmu1) ... 503s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 503s Setting up gcc-13 (13.2.0-17ubuntu2) ... 503s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 503s Setting up cpp (4:13.2.0-7ubuntu1) ... 503s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 503s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 503s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 503s Setting up g++-13 (13.2.0-17ubuntu2) ... 503s Setting up libtool (2.4.7-7) ... 503s Setting up libhts-dev:arm64 (1.18+ds-1) ... 503s Setting up gcc (4:13.2.0-7ubuntu1) ... 503s Setting up dh-autoreconf (20) ... 503s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 503s Setting up debhelper (13.14.1ubuntu1) ... 503s Setting up dh-exec (0.29) ... 503s Setting up g++ (4:13.2.0-7ubuntu1) ... 503s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 503s Setting up build-essential (12.10ubuntu1) ... 503s Setting up autopkgtest-satdep (0) ... 503s Processing triggers for man-db (2.12.0-3) ... 504s Processing triggers for install-info (7.1-3) ... 504s Processing triggers for libc-bin (2.39-0ubuntu2) ... 508s (Reading database ... 100209 files and directories currently installed.) 508s Removing autopkgtest-satdep (0) ... 509s autopkgtest [15:47:38]: test command1: debian/rules override_dh_auto_test 509s autopkgtest [15:47:38]: test command1: [----------------------- 509s sed \ 509s -e 's/$BAM2SAM/samtools view/g' \ 509s -e 's/\-\-header\-only/-H/g' \ 509s -e 's/\-\-no\-header//g' \ 509s -e 's|@PacBioBAM_BinDir@/||g' \ 509s -e 's|$TOOLS_BIN/||g' \ 509s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/tests|g' \ 509s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 509s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/gendata|g' \ 509s -e '/@PG/s|+dfsg||g' \ 509s -e 's/$SAMTOOLS/samtools/g' \ 509s tests/src/cram/pbbamify.t.in > tests/src/cram/pbbamify.deb.t 510s sed \ 510s -e 's/$BAM2SAM/samtools view/g' \ 510s -e 's/\-\-header\-only/-H/g' \ 510s -e 's/\-\-no\-header//g' \ 510s -e 's|@PacBioBAM_BinDir@/||g' \ 510s -e 's|$TOOLS_BIN/||g' \ 510s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/tests|g' \ 510s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 510s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/gendata|g' \ 510s -e '/@PG/s|+dfsg||g' \ 510s -e 's/$SAMTOOLS/samtools/g' \ 510s tests/src/cram/pbindexdump_cpp.t.in > tests/src/cram/pbindexdump_cpp.deb.t 510s sed \ 510s -e 's/$BAM2SAM/samtools view/g' \ 510s -e 's/\-\-header\-only/-H/g' \ 510s -e 's/\-\-no\-header//g' \ 510s -e 's|@PacBioBAM_BinDir@/||g' \ 510s -e 's|$TOOLS_BIN/||g' \ 510s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/tests|g' \ 510s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 510s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/gendata|g' \ 510s -e '/@PG/s|+dfsg||g' \ 510s -e 's/$SAMTOOLS/samtools/g' \ 510s tests/src/cram/pbindexdump_json.t.in > tests/src/cram/pbindexdump_json.deb.t 510s sed \ 510s -e 's/$BAM2SAM/samtools view/g' \ 510s -e 's/\-\-header\-only/-H/g' \ 510s -e 's/\-\-no\-header//g' \ 510s -e 's|@PacBioBAM_BinDir@/||g' \ 510s -e 's|$TOOLS_BIN/||g' \ 510s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/tests|g' \ 510s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 510s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/gendata|g' \ 510s -e '/@PG/s|+dfsg||g' \ 510s -e 's/$SAMTOOLS/samtools/g' \ 510s tests/src/cram/pbmerge_aligned_ordering.t.in > tests/src/cram/pbmerge_aligned_ordering.deb.t 510s sed \ 510s -e 's/$BAM2SAM/samtools view/g' \ 510s -e 's/\-\-header\-only/-H/g' \ 510s -e 's/\-\-no\-header//g' \ 510s -e 's|@PacBioBAM_BinDir@/||g' \ 510s -e 's|$TOOLS_BIN/||g' \ 510s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/tests|g' \ 510s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 510s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/gendata|g' \ 510s -e '/@PG/s|+dfsg||g' \ 510s -e 's/$SAMTOOLS/samtools/g' \ 510s tests/src/cram/pbmerge_dataset.t.in > tests/src/cram/pbmerge_dataset.deb.t 510s sed \ 510s -e 's/$BAM2SAM/samtools view/g' \ 510s -e 's/\-\-header\-only/-H/g' \ 510s -e 's/\-\-no\-header//g' \ 510s -e 's|@PacBioBAM_BinDir@/||g' \ 510s -e 's|$TOOLS_BIN/||g' \ 510s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/tests|g' \ 510s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 510s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/gendata|g' \ 510s -e '/@PG/s|+dfsg||g' \ 510s -e 's/$SAMTOOLS/samtools/g' \ 510s tests/src/cram/pbmerge_fofn.t.in > tests/src/cram/pbmerge_fofn.deb.t 510s sed \ 510s -e 's/$BAM2SAM/samtools view/g' \ 510s -e 's/\-\-header\-only/-H/g' \ 510s -e 's/\-\-no\-header//g' \ 510s -e 's|@PacBioBAM_BinDir@/||g' \ 510s -e 's|$TOOLS_BIN/||g' \ 510s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/tests|g' \ 510s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 510s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/gendata|g' \ 510s -e '/@PG/s|+dfsg||g' \ 510s -e 's/$SAMTOOLS/samtools/g' \ 510s tests/src/cram/pbmerge_mixed_ordering.t.in > tests/src/cram/pbmerge_mixed_ordering.deb.t 510s sed \ 510s -e 's/$BAM2SAM/samtools view/g' \ 510s -e 's/\-\-header\-only/-H/g' \ 510s -e 's/\-\-no\-header//g' \ 510s -e 's|@PacBioBAM_BinDir@/||g' \ 510s -e 's|$TOOLS_BIN/||g' \ 510s -e 's|@PacBioBAM_TestsDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/tests|g' \ 510s -e 's|@PacBioBAM_VERSION@|2.4.0+dfsg|g' \ 510s -e 's|@GeneratedTestDataDir@|/tmp/autopkgtest.CndkYO/build.rPq/src/gendata|g' \ 510s -e '/@PG/s|+dfsg||g' \ 510s -e 's/$SAMTOOLS/samtools/g' \ 510s tests/src/cram/pbmerge_pacbio_ordering.t.in > tests/src/cram/pbmerge_pacbio_ordering.deb.t 510s dh_auto_configure -O--buildsystem=meson 511s cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 512s The Meson build system 512s Version: 1.3.2 512s Source dir: /tmp/autopkgtest.CndkYO/build.rPq/src 512s Build dir: /tmp/autopkgtest.CndkYO/build.rPq/src/obj-aarch64-linux-gnu 512s Build type: native build 512s Project name: PacBioBAM 512s Project version: 2.4.0 512s C compiler for the host machine: cc (gcc 13.2.0 "cc (Ubuntu 13.2.0-17ubuntu2) 13.2.0") 512s C linker for the host machine: cc ld.bfd 2.42 512s C++ compiler for the host machine: c++ (gcc 13.2.0 "c++ (Ubuntu 13.2.0-17ubuntu2) 13.2.0") 512s C++ linker for the host machine: c++ ld.bfd 2.42 512s Host machine cpu family: aarch64 512s Host machine cpu: aarch64 512s Compiler for C++ supports arguments -Wduplicated-cond: YES 512s Compiler for C++ supports arguments -Wduplicated-branches: YES 512s Compiler for C++ supports arguments -Wlogical-op: YES 512s Compiler for C++ supports arguments -Wrestrict: YES 512s Compiler for C++ supports arguments -Wnull-dereference: YES 512s Compiler for C++ supports arguments -Wuseless-cast: YES 512s Compiler for C++ supports arguments -Wdouble-promotion: YES 512s Compiler for C++ supports arguments -Wshadow: YES 512s Compiler for C++ supports arguments -Wformat=1: YES 512s Run-time dependency threads found: YES 512s Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 512s Run-time dependency Boost found: YES 1.83.0 (/usr/include) 512s Run-time dependency zlib found: YES 1.3 512s Run-time dependency htslib found: YES 1.18 512s Run-time dependency pbcopper found: YES 2.3.0 512s Configuring PbbamVersion.cpp using configuration 512s Configuring LibraryVersion.h using configuration 512s Program tools/check-formatting found: YES (/tmp/autopkgtest.CndkYO/build.rPq/src/tools/check-formatting) 512s Program python3 found: YES (/usr/bin/python3) 512s Program cram3 found: YES (/usr/bin/cram3) 512s Run-time dependency GTest found: YES 1.14.0 512s Configuring group.fofn using configuration 512s Configuring PbbamTestData.h using configuration 512s Configuring synthetic_movie_all.subreadset.xml using configuration 512s Configuring Bam2SamVersion.h using configuration 512s Configuring bam2sam.t using configuration 512s Configuring PbIndexVersion.h using configuration 512s Configuring PbIndexDumpVersion.h using configuration 512s Configuring pbindexdump_json.t using configuration 512s Configuring pbindexdump_cpp.t using configuration 512s Configuring PbMergeVersion.h using configuration 512s Configuring pbmerge_pacbio_ordering.t using configuration 512s Configuring pbmerge_aligned_ordering.t using configuration 512s Configuring pbmerge_mixed_ordering.t using configuration 512s Configuring pbmerge_dataset.t using configuration 512s Configuring pbmerge_fofn.t using configuration 512s Configuring PbBamifyVersion.h using configuration 512s Program samtools found: YES (/usr/bin/samtools) 512s Configuring pbbamify.t using configuration 512s Configuring CcsKineticsBystrandifyVersion.h using configuration 512s Build targets in project: 12 512s 512s PacBioBAM 2.4.0 512s 512s User defined options 512s buildtype : plain 512s libdir : lib/aarch64-linux-gnu 512s localstatedir : /var 512s prefix : /usr 512s sysconfdir : /etc 512s wrap_mode : nodownload 512s python.bytecompile: -1 512s 512s Found ninja-1.11.1 at /usr/bin/ninja 512s mkdir -p /tmp/autopkgtest.CndkYO/build.rPq/src/gendata 512s python3 tests/scripts/generate_data.py /tmp/autopkgtest.CndkYO/build.rPq/src/tests/data /tmp/autopkgtest.CndkYO/build.rPq/src/gendata 512s Generating test data in /tmp/autopkgtest.CndkYO/build.rPq/src/gendata 512s - Creating file: truncated.bam...done. 512s - Creating file: chunking_emptyfilters.subreadset.xml...done. 512s - Creating file: chunking_missingfilters.subreadset.xml...done. 512s - Creating file: normal.fa...done. 512s - Creating file: normal.fq...done. 512s - Creating symlink: aligned.bam...done. 512s - Creating symlink: aligned.bam.bai...done. 512s - Creating symlink: aligned.bam.pbi...done. 512s - Creating symlink: aligned2.bam...done. 512s - Creating symlink: aligned2.bam.bai...done. 512s - Creating symlink: aligned2.bam.pbi...done. 512s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam...done. 512s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi...done. 512s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam...done. 512s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi...done. 512s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam...done. 512s - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi...done. 512s - Creating symlink: missing_pbi.bam...done. 512s # Fix broken PATH 512s synthetic_movie_all_path=`find $PWD -name synthetic_movie_all.subreadset.xml` ; \ 512s sed -i -e "s?.GENERATEDDATADIR/synthetic_movie_all.subreadset.xml?${synthetic_movie_all_path}?" tests/src/cram/pbbamify* 512s BINDIR=`dirname $(find $PWD -name pbmerge -type f -executable)`; \ 512s LIBDIR=`find $PWD -name lib -type d`; \ 512s PATH="$BINDIR:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin" LD_LIBRARY_PATH="$LIBDIR:" \ 512s cram3 -v --preserve-env tests/src/cram/pbbamify.deb.t tests/src/cram/pbindexdump_cpp.deb.t tests/src/cram/pbindexdump_json.deb.t tests/src/cram/pbmerge_aligned_ordering.deb.t tests/src/cram/pbmerge_dataset.deb.t tests/src/cram/pbmerge_fofn.deb.t tests/src/cram/pbmerge_mixed_ordering.deb.t tests/src/cram/pbmerge_pacbio_ordering.deb.t 512s dirname: missing operand 512s Try 'dirname --help' for more information. 512s tests/src/cram/pbbamify.deb.t: passed 512s tests/src/cram/pbindexdump_cpp.deb.t: passed 512s tests/src/cram/pbindexdump_json.deb.t: passed 513s tests/src/cram/pbmerge_aligned_ordering.deb.t: passed 513s tests/src/cram/pbmerge_dataset.deb.t: passed 513s tests/src/cram/pbmerge_fofn.deb.t: passed 513s tests/src/cram/pbmerge_mixed_ordering.deb.t: passed 513s tests/src/cram/pbmerge_pacbio_ordering.deb.t: passed 513s # Ran 8 tests, 0 skipped, 0 failed. 513s autopkgtest [15:47:42]: test command1: -----------------------] 514s command1 PASS 514s autopkgtest [15:47:43]: test command1: - - - - - - - - - - results - - - - - - - - - - 514s autopkgtest [15:47:43]: @@@@@@@@@@@@@@@@@@@@ summary 514s command1 PASS 537s Creating nova instance adt-noble-arm64-pbbam-20240318-153908-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240318.img (UUID c38d6760-4740-4c63-8ba1-31527817f4d6)...