0s autopkgtest [21:02:55]: starting date and time: 2024-03-13 21:02:55+0000
  0s autopkgtest [21:02:55]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [21:02:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ff5jruyo/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:fftw3,src:openmpi,src:pmix --apt-upgrade opentsne --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=fftw3/3.3.10-1ubuntu2 openmpi/4.1.6-5.1ubuntu3 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-21.secgroup --name adt-noble-arm64-opentsne-20240313-210255-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
130s autopkgtest [21:05:05]: testbed dpkg architecture: arm64
130s autopkgtest [21:05:05]: testbed apt version: 2.7.12
130s autopkgtest [21:05:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup
131s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
131s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [42.3 kB]
131s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B]
131s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [450 kB]
132s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2820 kB]
132s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [603 kB]
132s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
132s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB]
132s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
132s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3215 kB]
132s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
132s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [41.7 kB]
132s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
134s Fetched 7326 kB in 2s (3444 kB/s)
134s Reading package lists...
138s Reading package lists...
139s Building dependency tree...
139s Reading state information...
139s Calculating upgrade...
140s The following packages will be upgraded:
140s   console-setup console-setup-linux keyboard-configuration
140s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
140s Need to get 2202 kB of archives.
140s After this operation, 2048 B of additional disk space will be used.
140s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup-linux all 1.226ubuntu1 [1880 kB]
141s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup all 1.226ubuntu1 [110 kB]
141s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 keyboard-configuration all 1.226ubuntu1 [212 kB]
142s Preconfiguring packages ...
143s Fetched 2202 kB in 1s (3100 kB/s)
144s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74759 files and directories currently installed.)
144s Preparing to unpack .../console-setup-linux_1.226ubuntu1_all.deb ...
144s Unpacking console-setup-linux (1.226ubuntu1) over (1.223ubuntu2) ...
144s Preparing to unpack .../console-setup_1.226ubuntu1_all.deb ...
144s Unpacking console-setup (1.226ubuntu1) over (1.223ubuntu2) ...
144s Preparing to unpack .../keyboard-configuration_1.226ubuntu1_all.deb ...
144s Unpacking keyboard-configuration (1.226ubuntu1) over (1.223ubuntu2) ...
145s Setting up keyboard-configuration (1.226ubuntu1) ...
147s Your console font configuration will be updated the next time your system
147s boots. If you want to update it now, run 'setupcon' from a virtual console.
148s update-initramfs: deferring update (trigger activated)
148s Setting up console-setup-linux (1.226ubuntu1) ...
150s Setting up console-setup (1.226ubuntu1) ...
154s update-initramfs: deferring update (trigger activated)
154s Processing triggers for man-db (2.12.0-3) ...
155s Processing triggers for initramfs-tools (0.142ubuntu20) ...
156s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic
156s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
194s System running in EFI mode, skipping.
195s Reading package lists...
195s Building dependency tree...
195s Reading state information...
195s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
196s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
196s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
196s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
197s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
198s Reading package lists...
198s Reading package lists...
199s Building dependency tree...
199s Reading state information...
199s Calculating upgrade...
200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
200s Reading package lists...
200s Building dependency tree...
200s Reading state information...
201s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
201s autopkgtest [21:06:16]: rebooting testbed after setup commands that affected boot
432s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
439s autopkgtest [21:10:14]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
443s autopkgtest [21:10:18]: @@@@@@@@@@@@@@@@@@@@ apt-source opentsne
447s Get:1 http://ftpmaster.internal/ubuntu noble/universe opentsne 1.0.0-1ubuntu1 (dsc) [2504 B]
447s Get:2 http://ftpmaster.internal/ubuntu noble/universe opentsne 1.0.0-1ubuntu1 (tar) [22.6 MB]
447s Get:3 http://ftpmaster.internal/ubuntu noble/universe opentsne 1.0.0-1ubuntu1 (diff) [4180 B]
447s gpgv: Signature made Sat Nov 18 14:02:42 2023 UTC
447s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
447s gpgv: Can't check signature: No public key
447s dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.0-1ubuntu1.dsc: no acceptable signature found
448s autopkgtest [21:10:23]: testing package opentsne version 1.0.0-1ubuntu1
448s autopkgtest [21:10:23]: build not needed
451s autopkgtest [21:10:26]: test command1: preparing testbed
452s Reading package lists...
453s Building dependency tree...
453s Reading state information...
453s Starting pkgProblemResolver with broken count: 0
454s Starting 2 pkgProblemResolver with broken count: 0
454s Done
455s The following additional packages will be installed:
455s   libblas3 libfftw3-double3 libgfortran5 libgomp1 liblapack3 liblbfgsb0
455s   libpython3.11-minimal libpython3.11-stdlib python3-all python3-decorator
455s   python3-distutils python3-iniconfig python3-joblib python3-lib2to3
455s   python3-numpy python3-opentsne python3-packaging python3-pluggy
455s   python3-pytest python3-pytest-runner python3-scipy python3-setuptools
455s   python3-sklearn python3-sklearn-lib python3-threadpoolctl python3.11
455s   python3.11-minimal
455s Suggested packages:
455s   libfftw3-bin libfftw3-dev gcc gfortran python3-dev python-scipy-doc
455s   python-setuptools-doc python3-dap python-sklearn-doc ipython3
455s   python3.11-venv python3.11-doc binfmt-support
455s Recommended packages:
455s   python3-simplejson python3-psutil g++ | c++-compiler python3-pil
455s   python3-matplotlib
455s The following NEW packages will be installed:
455s   autopkgtest-satdep libblas3 libfftw3-double3 libgfortran5 libgomp1
455s   liblapack3 liblbfgsb0 libpython3.11-minimal libpython3.11-stdlib python3-all
455s   python3-decorator python3-distutils python3-iniconfig python3-joblib
455s   python3-lib2to3 python3-numpy python3-opentsne python3-packaging
455s   python3-pluggy python3-pytest python3-pytest-runner python3-scipy
455s   python3-setuptools python3-sklearn python3-sklearn-lib python3-threadpoolctl
455s   python3.11 python3.11-minimal
456s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded.
456s Need to get 42.6 MB/42.6 MB of archives.
456s After this operation, 218 MB of additional disk space will be used.
456s Get:1 /tmp/autopkgtest.gV7ecK/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B]
456s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB]
456s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB]
456s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB]
456s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB]
456s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
456s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
456s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu2 [384 kB]
456s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
456s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
456s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB]
456s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB]
456s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB]
456s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B]
456s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
457s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
457s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-joblib all 1.3.2-1 [207 kB]
457s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB]
457s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB]
457s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
457s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn-lib arm64 1.4.1.post1+dfsg-1 [6663 kB]
457s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB]
457s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-opentsne arm64 1.0.0-1ubuntu1 [502 kB]
457s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB]
457s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB]
457s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB]
457s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 python3-setuptools all 68.1.2-2 [396 kB]
457s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-runner all 2.11.1-4 [7450 B]
458s Fetched 42.6 MB in 2s (22.3 MB/s)
459s Selecting previously unselected package libpython3.11-minimal:arm64.
459s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74759 files and directories currently installed.)
459s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ...
459s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ...
459s Selecting previously unselected package python3.11-minimal.
459s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ...
459s Unpacking python3.11-minimal (3.11.8-1) ...
459s Selecting previously unselected package libpython3.11-stdlib:arm64.
459s Preparing to unpack .../02-libpython3.11-stdlib_3.11.8-1_arm64.deb ...
459s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ...
459s Selecting previously unselected package python3.11.
459s Preparing to unpack .../03-python3.11_3.11.8-1_arm64.deb ...
459s Unpacking python3.11 (3.11.8-1) ...
459s Selecting previously unselected package libblas3:arm64.
459s Preparing to unpack .../04-libblas3_3.12.0-3_arm64.deb ...
459s Unpacking libblas3:arm64 (3.12.0-3) ...
459s Selecting previously unselected package libgomp1:arm64.
459s Preparing to unpack .../05-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
459s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
459s Selecting previously unselected package libfftw3-double3:arm64.
459s Preparing to unpack .../06-libfftw3-double3_3.3.10-1ubuntu2_arm64.deb ...
459s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu2) ...
459s Selecting previously unselected package libgfortran5:arm64.
459s Preparing to unpack .../07-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
459s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
459s Selecting previously unselected package liblapack3:arm64.
459s Preparing to unpack .../08-liblapack3_3.12.0-3_arm64.deb ...
460s Unpacking liblapack3:arm64 (3.12.0-3) ...
460s Selecting previously unselected package liblbfgsb0:arm64.
460s Preparing to unpack .../09-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ...
460s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ...
460s Selecting previously unselected package python3-lib2to3.
460s Preparing to unpack .../10-python3-lib2to3_3.11.5-1_all.deb ...
460s Unpacking python3-lib2to3 (3.11.5-1) ...
460s Selecting previously unselected package python3-distutils.
460s Preparing to unpack .../11-python3-distutils_3.11.5-1_all.deb ...
460s Unpacking python3-distutils (3.11.5-1) ...
460s Selecting previously unselected package python3-all.
460s Preparing to unpack .../12-python3-all_3.12.1-0ubuntu2_arm64.deb ...
460s Unpacking python3-all (3.12.1-0ubuntu2) ...
460s Selecting previously unselected package python3-decorator.
460s Preparing to unpack .../13-python3-decorator_5.1.1-5_all.deb ...
460s Unpacking python3-decorator (5.1.1-5) ...
460s Selecting previously unselected package python3-iniconfig.
460s Preparing to unpack .../14-python3-iniconfig_1.1.1-2_all.deb ...
460s Unpacking python3-iniconfig (1.1.1-2) ...
460s Selecting previously unselected package python3-joblib.
460s Preparing to unpack .../15-python3-joblib_1.3.2-1_all.deb ...
460s Unpacking python3-joblib (1.3.2-1) ...
460s Selecting previously unselected package python3-numpy.
460s Preparing to unpack .../16-python3-numpy_1%3a1.24.2-2_arm64.deb ...
460s Unpacking python3-numpy (1:1.24.2-2) ...
460s Selecting previously unselected package python3-scipy.
460s Preparing to unpack .../17-python3-scipy_1.11.4-6_arm64.deb ...
460s Unpacking python3-scipy (1.11.4-6) ...
461s Selecting previously unselected package python3-threadpoolctl.
461s Preparing to unpack .../18-python3-threadpoolctl_3.1.0-1_all.deb ...
461s Unpacking python3-threadpoolctl (3.1.0-1) ...
462s Selecting previously unselected package python3-sklearn-lib:arm64.
462s Preparing to unpack .../19-python3-sklearn-lib_1.4.1.post1+dfsg-1_arm64.deb ...
462s Unpacking python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ...
462s Selecting previously unselected package python3-sklearn.
462s Preparing to unpack .../20-python3-sklearn_1.4.1.post1+dfsg-1_all.deb ...
462s Unpacking python3-sklearn (1.4.1.post1+dfsg-1) ...
463s Selecting previously unselected package python3-opentsne.
463s Preparing to unpack .../21-python3-opentsne_1.0.0-1ubuntu1_arm64.deb ...
463s Unpacking python3-opentsne (1.0.0-1ubuntu1) ...
463s Selecting previously unselected package python3-packaging.
463s Preparing to unpack .../22-python3-packaging_23.2-1_all.deb ...
463s Unpacking python3-packaging (23.2-1) ...
463s Selecting previously unselected package python3-pluggy.
463s Preparing to unpack .../23-python3-pluggy_1.4.0-1_all.deb ...
463s Unpacking python3-pluggy (1.4.0-1) ...
463s Selecting previously unselected package python3-pytest.
463s Preparing to unpack .../24-python3-pytest_7.4.4-1_all.deb ...
463s Unpacking python3-pytest (7.4.4-1) ...
463s Selecting previously unselected package python3-setuptools.
463s Preparing to unpack .../25-python3-setuptools_68.1.2-2_all.deb ...
463s Unpacking python3-setuptools (68.1.2-2) ...
463s Selecting previously unselected package python3-pytest-runner.
463s Preparing to unpack .../26-python3-pytest-runner_2.11.1-4_all.deb ...
463s Unpacking python3-pytest-runner (2.11.1-4) ...
463s Selecting previously unselected package autopkgtest-satdep.
463s Preparing to unpack .../27-1-autopkgtest-satdep.deb ...
463s Unpacking autopkgtest-satdep (0) ...
463s Setting up python3-iniconfig (1.1.1-2) ...
463s Setting up python3-joblib (1.3.2-1) ...
463s Setting up python3-threadpoolctl (3.1.0-1) ...
464s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
464s Setting up python3-decorator (5.1.1-5) ...
464s Setting up libblas3:arm64 (3.12.0-3) ...
464s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
464s Setting up python3-packaging (23.2-1) ...
464s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu2) ...
464s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
464s Setting up python3-pluggy (1.4.0-1) ...
464s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ...
464s Setting up python3-lib2to3 (3.11.5-1) ...
464s Setting up python3-distutils (3.11.5-1) ...
465s python3.12: can't get files for byte-compilation
465s Setting up python3.11-minimal (3.11.8-1) ...
465s Setting up liblapack3:arm64 (3.12.0-3) ...
465s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
465s Setting up python3-setuptools (68.1.2-2) ...
467s Setting up python3-pytest (7.4.4-1) ...
467s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ...
467s Setting up python3-all (3.12.1-0ubuntu2) ...
467s Setting up python3-pytest-runner (2.11.1-4) ...
468s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ...
468s Setting up python3.11 (3.11.8-1) ...
468s Setting up python3-numpy (1:1.24.2-2) ...
470s Setting up python3-scipy (1.11.4-6) ...
473s Setting up python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ...
473s Setting up python3-sklearn (1.4.1.post1+dfsg-1) ...
475s Setting up python3-opentsne (1.0.0-1ubuntu1) ...
476s Setting up autopkgtest-satdep (0) ...
476s Processing triggers for systemd (255.2-3ubuntu2) ...
476s Processing triggers for man-db (2.12.0-3) ...
477s Processing triggers for libc-bin (2.39-0ubuntu2) ...
482s (Reading database ... 79727 files and directories currently installed.)
482s Removing autopkgtest-satdep (0) ...
483s autopkgtest [21:10:58]: test command1: set -efu ; cp -rf tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest ; done
483s autopkgtest [21:10:58]: test command1: [-----------------------
484s Testing with python3.12:
488s ============================= test session starts ==============================
488s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0
488s rootdir: /tmp/autopkgtest.gV7ecK/autopkgtest_tmp
488s collected 163 items
488s 
489s tests/test_affinities.py .........................                       [ 15%]
505s tests/test_correctness.py ......................X...                     [ 31%]
508s tests/test_different_usages.py ............                              [ 38%]
511s tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%]
511s ss                                                                       [ 64%]
511s tests/test_sklearn_wrapper.py ...                                        [ 66%]
515s tests/test_tsne.py ...ss...............................................  [ 98%]
515s tests/test_utils.py ...                                                  [100%]
515s 
515s =============================== warnings summary ===============================
515s tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error
515s   /usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly.
515s     warnings.warn(
515s 
515s tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity
515s tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity
515s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances
515s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors
515s tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index
515s tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity
515s   /usr/lib/python3/dist-packages/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions.
515s     warnings.warn(
515s 
515s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
515s =========== 136 passed, 26 skipped, 1 xpassed, 7 warnings in 30.83s ============
516s autopkgtest [21:11:31]: test command1: -----------------------]
516s autopkgtest [21:11:31]: test command1:  - - - - - - - - - - results - - - - - - - - - -
516s command1             PASS
517s autopkgtest [21:11:32]: @@@@@@@@@@@@@@@@@@@@ summary
517s command1             PASS
536s Creating nova instance adt-noble-arm64-opentsne-20240313-210255-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240313.img (UUID 363cdc04-8630-403e-ac93-f1c7b1a75157)...