0s autopkgtest [04:38:46]: starting date: 2024-03-11
  0s autopkgtest [04:38:46]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline
  0s autopkgtest [04:38:46]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.48t0ou67/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:cairo,src:glib2.0,src:libpng1.6,src:wp2latex --apt-upgrade openbabel --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cairo/1.18.0-1ubuntu1 glib2.0/2.79.3-3ubuntu3 libpng1.6/1.6.43-3 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-7.secgroup --name adt-noble-arm64-openbabel-20240311-043846-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 87s autopkgtest [04:40:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 87s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 87s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [3976 B]
 88s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2623 kB]
 88s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [37.3 kB]
 88s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [434 kB]
 88s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [581 kB]
 88s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
 88s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB]
 88s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
 88s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [2967 kB]
 88s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
 88s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [39.6 kB]
 88s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
 90s Fetched 6834 kB in 2s (4210 kB/s)
 90s Reading package lists...
 93s Reading package lists...
 93s Building dependency tree...
 93s Reading state information...
 94s Calculating upgrade...
 94s The following packages will be REMOVED:
 94s   libglib2.0-0
 94s The following NEW packages will be installed:
 94s   libglib2.0-0t64 xdg-user-dirs
 94s The following packages will be upgraded:
 94s   gir1.2-glib-2.0 libglib2.0-data
 94s 2 upgraded, 2 newly installed, 1 to remove and 0 not upgraded.
 94s Need to get 1774 kB of archives.
 94s After this operation, 138 kB of additional disk space will be used.
 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
 95s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
 95s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
 95s Fetched 1774 kB in 1s (2707 kB/s)
 96s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74748 files and directories currently installed.)
 96s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
 96s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
 96s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
 96s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
 96s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
 96s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
 96s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
 96s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
 96s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
 96s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
 96s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
 96s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
 96s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
 96s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
 96s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
 96s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
 96s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
 96s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
 96s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
 96s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
 96s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
 96s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
 96s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
 96s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
 96s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
 96s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
 96s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
 96s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
 96s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
 96s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
 96s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
 96s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
 96s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
 96s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
 96s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
 96s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
 96s  fwupd depends on libglib2.0-0 (>= 2.79.0).
 96s  bolt depends on libglib2.0-0 (>= 2.56.0).
 96s 
 96s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74748 files and directories currently installed.)
 96s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
 96s Selecting previously unselected package libglib2.0-0t64:arm64.
 96s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74723 files and directories currently installed.)
 96s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
 96s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
 96s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
 96s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
 96s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
 96s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
 96s Selecting previously unselected package xdg-user-dirs.
 96s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ...
 96s Unpacking xdg-user-dirs (0.18-1) ...
 96s Setting up xdg-user-dirs (0.18-1) ...
 96s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
 96s No schema files found: doing nothing.
 96s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
 96s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
 96s Processing triggers for man-db (2.12.0-3) ...
 97s Processing triggers for libc-bin (2.39-0ubuntu2) ...
 97s Reading package lists...
 97s Building dependency tree...
 97s Reading state information...
 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 99s sh: Attempting to set up Debian/Ubuntu apt sources automatically
 99s sh: Distribution appears to be Ubuntu
100s Reading package lists...
100s Building dependency tree...
100s Reading state information...
101s eatmydata is already the newest version (131-1).
101s dbus is already the newest version (1.14.10-4ubuntu1).
101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
101s Reading package lists...
101s Building dependency tree...
101s Reading state information...
102s rng-tools-debian is already the newest version (2.4).
102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
102s Reading package lists...
102s Building dependency tree...
102s Reading state information...
102s haveged is already the newest version (1.9.14-1ubuntu1).
102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
102s Reading package lists...
103s Building dependency tree...
103s Reading state information...
103s The following packages will be REMOVED:
103s   cloud-init* python3-configobj* python3-debconf*
104s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
104s After this operation, 3248 kB disk space will be freed.
104s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74762 files and directories currently installed.)
104s Removing cloud-init (24.1-0ubuntu1) ...
105s Removing python3-configobj (5.0.8-3) ...
105s Removing python3-debconf (1.5.86) ...
105s Processing triggers for man-db (2.12.0-3) ...
105s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74373 files and directories currently installed.)
105s Purging configuration files for cloud-init (24.1-0ubuntu1) ...
108s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
108s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
109s Reading package lists...
109s Building dependency tree...
109s Reading state information...
109s linux-generic is already the newest version (6.8.0-11.11+1).
109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
110s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
110s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
110s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
110s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
111s Reading package lists...
111s Reading package lists...
112s Building dependency tree...
112s Reading state information...
112s Calculating upgrade...
112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
112s Reading package lists...
113s Building dependency tree...
113s Reading state information...
113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
114s autopkgtest [04:40:40]: rebooting testbed after setup commands that affected boot
329s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
334s autopkgtest [04:44:20]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
334s autopkgtest [04:44:20]: testbed dpkg architecture: arm64
336s autopkgtest [04:44:22]: @@@@@@@@@@@@@@@@@@@@ apt-source openbabel
350s Get:1 http://ftpmaster.internal/ubuntu noble/universe openbabel 3.1.1+dfsg-9ubuntu2 (dsc) [2903 B]
350s Get:2 http://ftpmaster.internal/ubuntu noble/universe openbabel 3.1.1+dfsg-9ubuntu2 (tar) [21.8 MB]
350s Get:3 http://ftpmaster.internal/ubuntu noble/universe openbabel 3.1.1+dfsg-9ubuntu2 (diff) [21.4 kB]
350s gpgv: Signature made Sat Jan 20 08:56:00 2024 UTC
350s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
350s gpgv: Can't check signature: No public key
350s dpkg-source: warning: cannot verify inline signature for ./openbabel_3.1.1+dfsg-9ubuntu2.dsc: no acceptable signature found
353s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/src/CMakeLists.txt more than once
353s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/CMakeLists.txt more than once
353s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/OpenBabel3Config.cmake.in more than once
353s autopkgtest [04:44:39]: testing package openbabel version 3.1.1+dfsg-9ubuntu2
353s autopkgtest [04:44:39]: build not needed
361s autopkgtest [04:44:47]: test python3: preparing testbed
365s Reading package lists...
365s Building dependency tree...
365s Reading state information...
365s Correcting dependencies...Starting pkgProblemResolver with broken count: 0
365s Starting 2 pkgProblemResolver with broken count: 0
366s Done
366s  Done
366s Starting pkgProblemResolver with broken count: 0
366s Starting 2 pkgProblemResolver with broken count: 0
366s Done
367s The following additional packages will be installed:
367s   adwaita-icon-theme at-spi2-common dconf-gsettings-backend dconf-service
367s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
367s   gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme
367s   libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3
367s   libavahi-common-data libavahi-common3 libboost-iostreams1.83.0
367s   libcairo-gobject2 libcairo2 libchemistry-openbabel-perl libcolord2 libcups2
367s   libdatrie1 libdconf1 libdeflate0 libepoxy0 libfontconfig1
367s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgomp1 libgraphite2-3
367s   libgtk-3-0 libgtk-3-common libharfbuzz0b libice6 libinchi1 libjbig0
367s   libjpeg-turbo8 libjpeg8 libjs-jquery liblcms2-2 liblerc4 libmaeparser1
367s   libnotify4 libopenbabel-dev libopenbabel-doc libopenbabel7 libpango-1.0-0
367s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0
367s   libpng16-16t64 libpython3.12 libsharpyuv0 libsm6 libthai-data libthai0
367s   libtiff6 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7
367s   libwxbase3.2-1 libwxgtk3.2-1 libxcb-render0 libxcb-shm0 libxcomposite1
367s   libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
367s   libxrender1 libxtst6 openbabel openbabel-gui python3-openbabel ubuntu-mono
367s   x11-common
367s Suggested packages:
367s   colord cups-common gvfs liblcms2-utils notification-daemon
367s Recommended packages:
367s   librsvg2-common at-spi2-core libgdk-pixbuf2.0-bin libgtk-3-bin
367s   javascript-common
367s The following packages will be REMOVED:
367s   libpng16-16
367s The following NEW packages will be installed:
367s   adwaita-icon-theme at-spi2-common dconf-gsettings-backend dconf-service
367s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
367s   gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme
367s   libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3
367s   libavahi-common-data libavahi-common3 libboost-iostreams1.83.0
367s   libcairo-gobject2 libcairo2 libchemistry-openbabel-perl libcolord2 libcups2
367s   libdatrie1 libdconf1 libdeflate0 libepoxy0 libfontconfig1
367s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgomp1 libgraphite2-3
367s   libgtk-3-0 libgtk-3-common libharfbuzz0b libice6 libinchi1 libjbig0
367s   libjpeg-turbo8 libjpeg8 libjs-jquery liblcms2-2 liblerc4 libmaeparser1
367s   libnotify4 libopenbabel-dev libopenbabel-doc libopenbabel7 libpango-1.0-0
367s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0
367s   libpng16-16t64 libpython3.12 libsharpyuv0 libsm6 libthai-data libthai0
367s   libtiff6 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7
367s   libwxbase3.2-1 libwxgtk3.2-1 libxcb-render0 libxcb-shm0 libxcomposite1
367s   libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
367s   libxrender1 libxtst6 openbabel openbabel-gui python3-openbabel ubuntu-mono
367s   x11-common
367s 0 upgraded, 82 newly installed, 1 to remove and 0 not upgraded.
367s 1 not fully installed or removed.
367s Need to get 32.0 MB of archives.
367s After this operation, 165 MB of additional disk space will be used.
367s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
368s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
368s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
368s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
368s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
368s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
368s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
368s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
368s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
368s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcairo2 arm64 1.18.0-1ubuntu1 [555 kB]
368s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
368s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libinchi1 arm64 1.03+dfsg-4 [448 kB]
368s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-2ubuntu1 [339 kB]
368s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB]
368s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenbabel7 arm64 3.1.1+dfsg-9ubuntu2 [3116 kB]
368s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 openbabel arm64 3.1.1+dfsg-9ubuntu2 [124 kB]
368s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
368s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxbase3.2-1 arm64 3.2.4+dfsg-3 [860 kB]
369s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B]
369s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
369s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
369s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
369s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
369s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
369s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
369s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
369s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
369s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB]
369s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB]
369s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B]
369s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB]
369s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB]
369s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB]
369s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B]
369s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB]
369s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB]
369s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatspi2.0-0 arm64 2.50.0-1 [78.5 kB]
369s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libatk-bridge2.0-0 arm64 2.50.0-1 [65.0 kB]
369s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcairo-gobject2 arm64 1.18.0-1ubuntu1 [127 kB]
369s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB]
369s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libcolord2 arm64 1.4.7-1 [148 kB]
369s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB]
369s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB]
369s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB]
369s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB]
369s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libepoxy0 arm64 1.5.10-1 [247 kB]
369s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
369s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
369s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
369s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
369s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
369s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
369s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
369s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
369s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
369s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-client0 arm64 1.22.0-2.1 [25.6 kB]
369s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-cursor0 arm64 1.22.0-2.1 [10.2 kB]
369s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-egl1 arm64 1.22.0-2.1 [5498 B]
369s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B]
369s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB]
369s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB]
369s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B]
369s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B]
369s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB]
369s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdconf1 arm64 0.40.0-4 [39.2 kB]
369s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-service arm64 0.40.0-4 [26.1 kB]
369s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-gsettings-backend arm64 0.40.0-4 [21.6 kB]
369s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB]
369s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-0 arm64 3.24.40-2ubuntu1 [2867 kB]
369s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libnotify4 arm64 0.8.3-1 [25.3 kB]
369s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
369s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
369s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
370s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB]
370s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxgtk3.2-1 arm64 3.2.4+dfsg-3 [4341 kB]
370s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 openbabel-gui arm64 3.1.1+dfsg-9ubuntu2 [84.3 kB]
370s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenbabel-dev arm64 3.1.1+dfsg-9ubuntu2 [181 kB]
370s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
370s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenbabel-doc all 3.1.1+dfsg-9ubuntu2 [5613 kB]
370s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB]
370s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-openbabel arm64 3.1.1+dfsg-9ubuntu2 [586 kB]
370s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libchemistry-openbabel-perl arm64 3.1.1+dfsg-9ubuntu2 [703 kB]
372s Fetched 32.0 MB in 3s (9880 kB/s)
372s Selecting previously unselected package fonts-dejavu-mono.
372s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74318 files and directories currently installed.)
372s Preparing to unpack .../fonts-dejavu-mono_2.37-8_all.deb ...
372s Unpacking fonts-dejavu-mono (2.37-8) ...
372s Selecting previously unselected package fonts-dejavu-core.
372s Preparing to unpack .../fonts-dejavu-core_2.37-8_all.deb ...
372s Unpacking fonts-dejavu-core (2.37-8) ...
372s Selecting previously unselected package fontconfig-config.
372s Preparing to unpack .../fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
372s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
372s Selecting previously unselected package libfontconfig1:arm64.
372s Preparing to unpack .../libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
372s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
372s Selecting previously unselected package libpixman-1-0:arm64.
372s Preparing to unpack .../libpixman-1-0_0.42.2-1_arm64.deb ...
372s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
372s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
372s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
372s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
372s 
372s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74460 files and directories currently installed.)
372s Removing libpng16-16:arm64 (1.6.43-1) ...
372s Selecting previously unselected package libpng16-16t64:arm64.
372s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74450 files and directories currently installed.)
372s Preparing to unpack .../00-libpng16-16t64_1.6.43-3_arm64.deb ...
372s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
372s Selecting previously unselected package libxcb-render0:arm64.
372s Preparing to unpack .../01-libxcb-render0_1.15-1_arm64.deb ...
372s Unpacking libxcb-render0:arm64 (1.15-1) ...
372s Selecting previously unselected package libxcb-shm0:arm64.
372s Preparing to unpack .../02-libxcb-shm0_1.15-1_arm64.deb ...
372s Unpacking libxcb-shm0:arm64 (1.15-1) ...
373s Selecting previously unselected package libxrender1:arm64.
373s Preparing to unpack .../03-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
373s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
373s Selecting previously unselected package libcairo2:arm64.
373s Preparing to unpack .../04-libcairo2_1.18.0-1ubuntu1_arm64.deb ...
373s Unpacking libcairo2:arm64 (1.18.0-1ubuntu1) ...
373s Selecting previously unselected package libgomp1:arm64.
373s Preparing to unpack .../05-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
373s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
373s Selecting previously unselected package libinchi1.
373s Preparing to unpack .../06-libinchi1_1.03+dfsg-4_arm64.deb ...
373s Unpacking libinchi1 (1.03+dfsg-4) ...
373s Selecting previously unselected package libboost-iostreams1.83.0:arm64.
373s Preparing to unpack .../07-libboost-iostreams1.83.0_1.83.0-2ubuntu1_arm64.deb ...
373s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-2ubuntu1) ...
373s Selecting previously unselected package libmaeparser1:arm64.
373s Preparing to unpack .../08-libmaeparser1_1.3.1-1build1_arm64.deb ...
373s Unpacking libmaeparser1:arm64 (1.3.1-1build1) ...
373s Selecting previously unselected package libopenbabel7.
373s Preparing to unpack .../09-libopenbabel7_3.1.1+dfsg-9ubuntu2_arm64.deb ...
373s Unpacking libopenbabel7 (3.1.1+dfsg-9ubuntu2) ...
373s Selecting previously unselected package openbabel.
373s Preparing to unpack .../10-openbabel_3.1.1+dfsg-9ubuntu2_arm64.deb ...
373s Unpacking openbabel (3.1.1+dfsg-9ubuntu2) ...
373s Selecting previously unselected package libpcre2-32-0:arm64.
373s Preparing to unpack .../11-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
373s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
373s Selecting previously unselected package libwxbase3.2-1:arm64.
373s Preparing to unpack .../12-libwxbase3.2-1_3.2.4+dfsg-3_arm64.deb ...
373s Unpacking libwxbase3.2-1:arm64 (3.2.4+dfsg-3) ...
373s Selecting previously unselected package libgdk-pixbuf2.0-common.
373s Preparing to unpack .../13-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ...
373s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
373s Selecting previously unselected package libjpeg-turbo8:arm64.
374s Preparing to unpack .../14-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
374s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
374s Selecting previously unselected package libjpeg8:arm64.
374s Preparing to unpack .../15-libjpeg8_8c-2ubuntu11_arm64.deb ...
374s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
374s Selecting previously unselected package libdeflate0:arm64.
374s Preparing to unpack .../16-libdeflate0_1.19-1_arm64.deb ...
374s Unpacking libdeflate0:arm64 (1.19-1) ...
374s Selecting previously unselected package libjbig0:arm64.
374s Preparing to unpack .../17-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
374s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
374s Selecting previously unselected package liblerc4:arm64.
374s Preparing to unpack .../18-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
374s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
374s Selecting previously unselected package libsharpyuv0:arm64.
374s Preparing to unpack .../19-libsharpyuv0_1.3.2-0.4_arm64.deb ...
374s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
374s Selecting previously unselected package libwebp7:arm64.
374s Preparing to unpack .../20-libwebp7_1.3.2-0.4_arm64.deb ...
374s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
374s Selecting previously unselected package libtiff6:arm64.
374s Preparing to unpack .../21-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
374s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
374s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64.
374s Preparing to unpack .../22-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ...
374s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ...
374s Selecting previously unselected package gtk-update-icon-cache.
374s Preparing to unpack .../23-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ...
374s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ...
374s Selecting previously unselected package hicolor-icon-theme.
374s Preparing to unpack .../24-hicolor-icon-theme_0.17-2_all.deb ...
374s Unpacking hicolor-icon-theme (0.17-2) ...
374s Selecting previously unselected package humanity-icon-theme.
374s Preparing to unpack .../25-humanity-icon-theme_0.6.16_all.deb ...
374s Unpacking humanity-icon-theme (0.6.16) ...
375s Selecting previously unselected package ubuntu-mono.
375s Preparing to unpack .../26-ubuntu-mono_24.04-0ubuntu1_all.deb ...
375s Unpacking ubuntu-mono (24.04-0ubuntu1) ...
376s Selecting previously unselected package adwaita-icon-theme.
376s Preparing to unpack .../27-adwaita-icon-theme_46~rc-1_all.deb ...
376s Unpacking adwaita-icon-theme (46~rc-1) ...
376s Selecting previously unselected package at-spi2-common.
376s Preparing to unpack .../28-at-spi2-common_2.50.0-1_all.deb ...
376s Unpacking at-spi2-common (2.50.0-1) ...
376s Selecting previously unselected package libatk1.0-0:arm64.
377s Preparing to unpack .../29-libatk1.0-0_2.50.0-1_arm64.deb ...
377s Unpacking libatk1.0-0:arm64 (2.50.0-1) ...
377s Selecting previously unselected package libxi6:arm64.
377s Preparing to unpack .../30-libxi6_2%3a1.8.1-1_arm64.deb ...
377s Unpacking libxi6:arm64 (2:1.8.1-1) ...
377s Selecting previously unselected package libatspi2.0-0:arm64.
377s Preparing to unpack .../31-libatspi2.0-0_2.50.0-1_arm64.deb ...
377s Unpacking libatspi2.0-0:arm64 (2.50.0-1) ...
377s Selecting previously unselected package libatk-bridge2.0-0:arm64.
377s Preparing to unpack .../32-libatk-bridge2.0-0_2.50.0-1_arm64.deb ...
377s Unpacking libatk-bridge2.0-0:arm64 (2.50.0-1) ...
377s Selecting previously unselected package libcairo-gobject2:arm64.
377s Preparing to unpack .../33-libcairo-gobject2_1.18.0-1ubuntu1_arm64.deb ...
377s Unpacking libcairo-gobject2:arm64 (1.18.0-1ubuntu1) ...
377s Selecting previously unselected package liblcms2-2:arm64.
377s Preparing to unpack .../34-liblcms2-2_2.14-2_arm64.deb ...
377s Unpacking liblcms2-2:arm64 (2.14-2) ...
377s Selecting previously unselected package libcolord2:arm64.
377s Preparing to unpack .../35-libcolord2_1.4.7-1_arm64.deb ...
377s Unpacking libcolord2:arm64 (1.4.7-1) ...
377s Selecting previously unselected package libavahi-common-data:arm64.
377s Preparing to unpack .../36-libavahi-common-data_0.8-13ubuntu2_arm64.deb ...
377s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ...
377s Selecting previously unselected package libavahi-common3:arm64.
378s Preparing to unpack .../37-libavahi-common3_0.8-13ubuntu2_arm64.deb ...
378s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ...
378s Selecting previously unselected package libavahi-client3:arm64.
378s Preparing to unpack .../38-libavahi-client3_0.8-13ubuntu2_arm64.deb ...
378s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ...
378s Selecting previously unselected package libcups2:arm64.
378s Preparing to unpack .../39-libcups2_2.4.6-0ubuntu3_arm64.deb ...
378s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ...
378s Selecting previously unselected package libepoxy0:arm64.
378s Preparing to unpack .../40-libepoxy0_1.5.10-1_arm64.deb ...
378s Unpacking libepoxy0:arm64 (1.5.10-1) ...
379s Selecting previously unselected package libgraphite2-3:arm64.
379s Preparing to unpack .../41-libgraphite2-3_1.3.14-2_arm64.deb ...
379s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
379s Selecting previously unselected package libharfbuzz0b:arm64.
379s Preparing to unpack .../42-libharfbuzz0b_8.3.0-2_arm64.deb ...
379s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
379s Selecting previously unselected package fontconfig.
379s Preparing to unpack .../43-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
379s Unpacking fontconfig (2.15.0-1ubuntu1) ...
379s Selecting previously unselected package libthai-data.
379s Preparing to unpack .../44-libthai-data_0.1.29-2_all.deb ...
379s Unpacking libthai-data (0.1.29-2) ...
379s Selecting previously unselected package libdatrie1:arm64.
379s Preparing to unpack .../45-libdatrie1_0.2.13-3_arm64.deb ...
379s Unpacking libdatrie1:arm64 (0.2.13-3) ...
379s Selecting previously unselected package libthai0:arm64.
379s Preparing to unpack .../46-libthai0_0.1.29-2_arm64.deb ...
379s Unpacking libthai0:arm64 (0.1.29-2) ...
379s Selecting previously unselected package libpango-1.0-0:arm64.
379s Preparing to unpack .../47-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
379s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
379s Selecting previously unselected package libpangoft2-1.0-0:arm64.
379s Preparing to unpack .../48-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
379s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
379s Selecting previously unselected package libpangocairo-1.0-0:arm64.
379s Preparing to unpack .../49-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
379s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
379s Selecting previously unselected package libwayland-client0:arm64.
379s Preparing to unpack .../50-libwayland-client0_1.22.0-2.1_arm64.deb ...
379s Unpacking libwayland-client0:arm64 (1.22.0-2.1) ...
379s Selecting previously unselected package libwayland-cursor0:arm64.
379s Preparing to unpack .../51-libwayland-cursor0_1.22.0-2.1_arm64.deb ...
379s Unpacking libwayland-cursor0:arm64 (1.22.0-2.1) ...
379s Selecting previously unselected package libwayland-egl1:arm64.
379s Preparing to unpack .../52-libwayland-egl1_1.22.0-2.1_arm64.deb ...
379s Unpacking libwayland-egl1:arm64 (1.22.0-2.1) ...
379s Selecting previously unselected package libxcomposite1:arm64.
379s Preparing to unpack .../53-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ...
379s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ...
379s Selecting previously unselected package libxfixes3:arm64.
379s Preparing to unpack .../54-libxfixes3_1%3a6.0.0-2_arm64.deb ...
379s Unpacking libxfixes3:arm64 (1:6.0.0-2) ...
379s Selecting previously unselected package libxcursor1:arm64.
380s Preparing to unpack .../55-libxcursor1_1%3a1.2.1-1_arm64.deb ...
380s Unpacking libxcursor1:arm64 (1:1.2.1-1) ...
380s Selecting previously unselected package libxdamage1:arm64.
380s Preparing to unpack .../56-libxdamage1_1%3a1.1.6-1_arm64.deb ...
380s Unpacking libxdamage1:arm64 (1:1.1.6-1) ...
380s Selecting previously unselected package libxinerama1:arm64.
380s Preparing to unpack .../57-libxinerama1_2%3a1.1.4-3_arm64.deb ...
380s Unpacking libxinerama1:arm64 (2:1.1.4-3) ...
380s Selecting previously unselected package libxrandr2:arm64.
380s Preparing to unpack .../58-libxrandr2_2%3a1.5.2-2_arm64.deb ...
380s Unpacking libxrandr2:arm64 (2:1.5.2-2) ...
380s Selecting previously unselected package libdconf1:arm64.
380s Preparing to unpack .../59-libdconf1_0.40.0-4_arm64.deb ...
380s Unpacking libdconf1:arm64 (0.40.0-4) ...
380s Selecting previously unselected package dconf-service.
380s Preparing to unpack .../60-dconf-service_0.40.0-4_arm64.deb ...
380s Unpacking dconf-service (0.40.0-4) ...
380s Selecting previously unselected package dconf-gsettings-backend:arm64.
380s Preparing to unpack .../61-dconf-gsettings-backend_0.40.0-4_arm64.deb ...
380s Unpacking dconf-gsettings-backend:arm64 (0.40.0-4) ...
380s Selecting previously unselected package libgtk-3-common.
380s Preparing to unpack .../62-libgtk-3-common_3.24.40-2ubuntu1_all.deb ...
380s Unpacking libgtk-3-common (3.24.40-2ubuntu1) ...
380s Selecting previously unselected package libgtk-3-0:arm64.
380s Preparing to unpack .../63-libgtk-3-0_3.24.40-2ubuntu1_arm64.deb ...
380s Unpacking libgtk-3-0:arm64 (3.24.40-2ubuntu1) ...
380s Selecting previously unselected package libnotify4:arm64.
380s Preparing to unpack .../64-libnotify4_0.8.3-1_arm64.deb ...
380s Unpacking libnotify4:arm64 (0.8.3-1) ...
380s Selecting previously unselected package x11-common.
380s Preparing to unpack .../65-x11-common_1%3a7.7+23ubuntu2_all.deb ...
380s Unpacking x11-common (1:7.7+23ubuntu2) ...
380s Selecting previously unselected package libice6:arm64.
380s Preparing to unpack .../66-libice6_2%3a1.0.10-1build2_arm64.deb ...
380s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
380s Selecting previously unselected package libsm6:arm64.
381s Preparing to unpack .../67-libsm6_2%3a1.2.3-1build2_arm64.deb ...
381s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
381s Selecting previously unselected package libxtst6:arm64.
381s Preparing to unpack .../68-libxtst6_2%3a1.2.3-1.1_arm64.deb ...
381s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ...
381s Selecting previously unselected package libwxgtk3.2-1:arm64.
381s Preparing to unpack .../69-libwxgtk3.2-1_3.2.4+dfsg-3_arm64.deb ...
381s Unpacking libwxgtk3.2-1:arm64 (3.2.4+dfsg-3) ...
381s Selecting previously unselected package openbabel-gui.
381s Preparing to unpack .../70-openbabel-gui_3.1.1+dfsg-9ubuntu2_arm64.deb ...
381s Unpacking openbabel-gui (3.1.1+dfsg-9ubuntu2) ...
381s Selecting previously unselected package libopenbabel-dev.
381s Preparing to unpack .../71-libopenbabel-dev_3.1.1+dfsg-9ubuntu2_arm64.deb ...
381s Unpacking libopenbabel-dev (3.1.1+dfsg-9ubuntu2) ...
381s Selecting previously unselected package libjs-jquery.
381s Preparing to unpack .../72-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
381s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
381s Selecting previously unselected package libopenbabel-doc.
381s Preparing to unpack .../73-libopenbabel-doc_3.1.1+dfsg-9ubuntu2_all.deb ...
381s Unpacking libopenbabel-doc (3.1.1+dfsg-9ubuntu2) ...
382s Selecting previously unselected package libpython3.12:arm64.
382s Preparing to unpack .../74-libpython3.12_3.12.2-1_arm64.deb ...
382s Unpacking libpython3.12:arm64 (3.12.2-1) ...
382s Selecting previously unselected package python3-openbabel.
382s Preparing to unpack .../75-python3-openbabel_3.1.1+dfsg-9ubuntu2_arm64.deb ...
382s Unpacking python3-openbabel (3.1.1+dfsg-9ubuntu2) ...
382s Selecting previously unselected package libchemistry-openbabel-perl.
382s Preparing to unpack .../76-libchemistry-openbabel-perl_3.1.1+dfsg-9ubuntu2_arm64.deb ...
382s Unpacking libchemistry-openbabel-perl (3.1.1+dfsg-9ubuntu2) ...
383s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
383s Setting up liblcms2-2:arm64 (2.14-2) ...
383s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
383s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
383s Setting up libxdamage1:arm64 (1:1.1.6-1) ...
383s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
383s Setting up hicolor-icon-theme (0.17-2) ...
383s Setting up libxi6:arm64 (2:1.8.1-1) ...
383s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
383s Setting up libdatrie1:arm64 (0.2.13-3) ...
383s Setting up libxcb-render0:arm64 (1.15-1) ...
383s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
383s Setting up x11-common (1:7.7+23ubuntu2) ...
384s Setting up libdeflate0:arm64 (1.19-1) ...
384s Setting up libxcb-shm0:arm64 (1.15-1) ...
384s Setting up libatspi2.0-0:arm64 (2.50.0-1) ...
384s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
384s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
384s Setting up libcolord2:arm64 (1.4.7-1) ...
384s Setting up libdconf1:arm64 (0.40.0-4) ...
384s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
384s Setting up libepoxy0:arm64 (1.5.10-1) ...
384s Setting up libxfixes3:arm64 (1:6.0.0-2) ...
384s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-2ubuntu1) ...
384s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ...
384s Setting up libxinerama1:arm64 (2:1.1.4-3) ...
384s Setting up fonts-dejavu-mono (2.37-8) ...
384s Setting up libpng16-16t64:arm64 (1.6.43-3) ...
384s Setting up libxrandr2:arm64 (2:1.5.2-2) ...
384s Setting up fonts-dejavu-core (2.37-8) ...
384s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
384s Setting up libwebp7:arm64 (1.3.2-0.4) ...
384s Setting up at-spi2-common (2.50.0-1) ...
384s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
384s Setting up libthai-data (0.1.29-2) ...
384s Setting up libatk1.0-0:arm64 (2.50.0-1) ...
384s Setting up libwayland-egl1:arm64 (1.22.0-2.1) ...
384s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
384s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ...
384s Setting up libpython3.12:arm64 (3.12.2-1) ...
384s Setting up libinchi1 (1.03+dfsg-4) ...
384s Setting up libwayland-client0:arm64 (1.22.0-2.1) ...
384s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
384s Setting up libice6:arm64 (2:1.0.10-1build2) ...
384s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
384s Setting up libxtst6:arm64 (2:1.2.3-1.1) ...
384s Setting up libxcursor1:arm64 (1:1.2.1-1) ...
384s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ...
384s Setting up dconf-service (0.40.0-4) ...
384s Setting up libopenbabel-doc (3.1.1+dfsg-9ubuntu2) ...
384s Setting up libwxbase3.2-1:arm64 (3.2.4+dfsg-3) ...
384s Setting up libmaeparser1:arm64 (1.3.1-1build1) ...
384s Setting up libatk-bridge2.0-0:arm64 (2.50.0-1) ...
384s Setting up libthai0:arm64 (0.1.29-2) ...
384s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
385s Setting up libwayland-cursor0:arm64 (1.22.0-2.1) ...
385s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ...
385s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
385s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
385s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ...
385s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ...
385s Setting up fontconfig (2.15.0-1ubuntu1) ...
387s Regenerating fonts cache... done.
387s Setting up dconf-gsettings-backend:arm64 (0.40.0-4) ...
387s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
387s Setting up libcairo2:arm64 (1.18.0-1ubuntu1) ...
387s Setting up libnotify4:arm64 (0.8.3-1) ...
387s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ...
387s Setting up libcairo-gobject2:arm64 (1.18.0-1ubuntu1) ...
387s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
387s Setting up libgtk-3-common (3.24.40-2ubuntu1) ...
387s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
387s Setting up libopenbabel7 (3.1.1+dfsg-9ubuntu2) ...
387s Setting up libopenbabel-dev (3.1.1+dfsg-9ubuntu2) ...
387s Setting up libchemistry-openbabel-perl (3.1.1+dfsg-9ubuntu2) ...
387s Setting up python3-openbabel (3.1.1+dfsg-9ubuntu2) ...
387s Setting up openbabel (3.1.1+dfsg-9ubuntu2) ...
387s Setting up adwaita-icon-theme (46~rc-1) ...
387s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
387s Setting up humanity-icon-theme (0.6.16) ...
387s Setting up ubuntu-mono (24.04-0ubuntu1) ...
387s Processing triggers for man-db (2.12.0-3) ...
388s Processing triggers for libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
388s Setting up libgtk-3-0:arm64 (3.24.40-2ubuntu1) ...
388s Processing triggers for libc-bin (2.39-0ubuntu2) ...
388s Setting up libwxgtk3.2-1:arm64 (3.2.4+dfsg-3) ...
388s Setting up openbabel-gui (3.1.1+dfsg-9ubuntu2) ...
388s Setting up autopkgtest-satdep (0) ...
388s Processing triggers for libc-bin (2.39-0ubuntu2) ...
396s (Reading database ... 89394 files and directories currently installed.)
396s Removing autopkgtest-satdep (0) ...
397s autopkgtest [04:45:23]: test python3: [-----------------------
398s Running test/testRInChI.py ...
398s /tmp/autopkgtest.pZT816/build.VIt/src/test/testRInChI.py:1: SyntaxWarning: invalid escape sequence '\P'
398s   """Test OpenBabel executables from Python
398s /tmp/autopkgtest.pZT816/build.VIt/src/test/testbabel.py:1: SyntaxWarning: invalid escape sequence '\P'
398s   """Test OpenBabel executables from Python
398s /tmp/autopkgtest.pZT816/build.VIt/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d'
398s   pat = "(-?\d.*) molecule(?:s?) converted"
400s ..
400s ----------------------------------------------------------------------
400s Ran 2 tests in 1.939s
400s 
400s OK
400s Running test/test_pybel.py ...
400s /tmp/autopkgtest.pZT816/build.VIt/src/test/test_pybel.py:1: SyntaxWarning: invalid escape sequence '\P'
400s   """Test OpenBabel Python bindings
400s /tmp/autopkgtest.pZT816/build.VIt/src/test/testbindings.py:1: SyntaxWarning: invalid escape sequence '\P'
400s   """Test OpenBabel Python bindings
400s .........................==============================
400s *** Open Babel Warning  in WriteMolecule
400s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
400s .....==============================
400s *** Open Babel Error  in SMARTSError
400s   SMARTS Error:
400s [#NOEL][#NOEL]
400s   ^
400s 
400s ....
400s ----------------------------------------------------------------------
400s Ran 34 tests in 0.287s
400s 
400s OK
400s Running test/testbabel.py ...
400s /tmp/autopkgtest.pZT816/build.VIt/src/test/testbabel.py:1: SyntaxWarning: invalid escape sequence '\P'
400s   """Test OpenBabel executables from Python
400s /tmp/autopkgtest.pZT816/build.VIt/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d'
400s   pat = "(-?\d.*) molecule(?:s?) converted"
402s ......./usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
402s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
402s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
402s   self.stdout = io.open(c2pread, 'rb', bufsize)
402s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
402s   self.stderr = io.open(errread, 'rb', bufsize)
404s ......
404s ----------------------------------------------------------------------
404s Ran 13 tests in 3.824s
404s 
404s OK
404s Running test/testbindings.py ...
404s /tmp/autopkgtest.pZT816/build.VIt/src/test/testbindings.py:1: SyntaxWarning: invalid escape sequence '\P'
404s   """Test OpenBabel Python bindings
404s ...==============================
404s *** Open Babel Warning  in WriteMolecule
404s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
404s ....==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Too many greater-than signs in SMILES string
404s 
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Too many greater-than signs in SMILES string
404s 
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Too many greater-than signs in SMILES string
404s 
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
404s ..==============================
404s *** Open Babel Warning  in IsValid
404s   The molecule is not marked as a reaction. Use SetIsReaction().
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   Reaction roles should be in the range 0 to 3 inclusive.
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   Reaction component Ids should all be non-zero positive integers.
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   The molecule contains an atom that is missing a reaction component Id. Use SetComponentId().
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   A reaction component Id has been stored using a data type that is not an OBPairInteger.
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   The molecule contains a connected component that contains atoms with different reaction component Ids. All atoms in a particular connected component should have the same value.
404s ==============================
404s *** Open Babel Warning  in IsValid
404s   The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role.
404s ...........==============================
404s *** Open Babel Warning  in ReadMolecule
404s   WARNING: Problem interpreting the valence field of an atom
404s The valence field specifies a valence 0 that is
404s less than the observed explicit valence 1.
404s 
404s .==============================
404s *** Open Babel Warning  in WriteMolecule
404s   No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
404s ..........==============================
404s *** Open Babel Error  in ParseComplex
404s   SMILES string contains a character '#' which is invalid
404s ==============================
404s *** Open Babel Error  in ParseComplex
404s   Element number must be <= 255)
404s ==============================
404s *** Open Babel Error  in ParseComplex
404s   SMILES string contains a character '#' which is invalid
404s ..==============================
404s *** Open Babel Warning  in ParseRingBond
404s   Warning: Tetrahedral stereo specified for atom with more than 4 connections.
404s ==============================
404s *** Open Babel Warning  in ParseSmiles
404s   Failed to kekulize aromatic SMILES
404s 
458s ...Ignoring test/testbindings.py on arm64 ...
458s Running test/testcdjsonformat.py ...
458s /tmp/autopkgtest.pZT816/build.VIt/src/debian/tests/python3: line 9:  2637 Killed                  python3 ${TEST}
458s /tmp/autopkgtest.pZT816/build.VIt/src/test/testcdjsonformat.py:1: SyntaxWarning: invalid escape sequence '\P'
458s   """Test ChemDoodle JSON format using the OpenBabel Python bindings
459s ..........
459s ----------------------------------------------------------------------
459s Ran 10 tests in 0.020s
459s 
459s OK
459s Running test/testdistgeom.py ...
459s /tmp/autopkgtest.pZT816/build.VIt/src/test/testdistgeom.py:1: SyntaxWarning: invalid escape sequence '\P'
459s   """Test OpenBabel executables from Python
459s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
459s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
459s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
459s   self.stdout = io.open(c2pread, 'rb', bufsize)
459s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
459s   self.stderr = io.open(errread, 'rb', bufsize)
496s .
496s ----------------------------------------------------------------------
496s Ran 1 test in 37.560s
496s 
496s OK
496s Running test/testexample.py ...
496s /tmp/autopkgtest.pZT816/build.VIt/src/test/testexample.py:1: SyntaxWarning: invalid escape sequence '\P'
496s   """Example test that uses the OpenBabel Python bindings
496s ..
496s ----------------------------------------------------------------------
496s Ran 2 tests in 0.001s
496s 
496s OK
496s Running test/testfastsearch.py ...
497s /tmp/autopkgtest.pZT816/build.VIt/src/test/testfastsearch.py:1: SyntaxWarning: invalid escape sequence '\P'
497s   """Test OpenBabel executables from Python
497s /tmp/autopkgtest.pZT816/build.VIt/src/test/testfastsearch.py:30: SyntaxWarning: invalid escape sequence '\C'
497s   smiles = """C12(C(N(C(=O)C)c3c2cccc3)=O)Nc2c(ccc(c2N1)OCCCC)OCCCC
497s .
497s ----------------------------------------------------------------------
497s Ran 1 test in 0.062s
497s 
497s OK
497s Running test/testkekule.py ...
497s /tmp/autopkgtest.pZT816/build.VIt/src/test/testkekule.py:1: SyntaxWarning: invalid escape sequence '\P'
497s   """Test OpenBabel executables from Python
497s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
497s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
497s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
497s   self.stdout = io.open(c2pread, 'rb', bufsize)
497s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
497s   self.stderr = io.open(errread, 'rb', bufsize)
497s ...
497s ----------------------------------------------------------------------
497s Ran 3 tests in 0.506s
497s 
497s OK
497s Running test/testobconv_writers.py ...
497s ..........................................................................................F.................................Ignoring test/testobconv_writers.py on arm64 ...
497s Running test/testpcjsonformat.py ...
497s .................
497s ======================================================================
497s FAIL: test_default (__main__.TestPCJSON.test_default)
497s ----------------------------------------------------------------------
497s Traceback (most recent call last):
497s   File "/tmp/autopkgtest.pZT816/build.VIt/src/test/testobconv_writers.py", line 2761, in test_default
497s     self.assertWriters(self.fmt, """\
497s   File "/tmp/autopkgtest.pZT816/build.VIt/src/test/testobconv_writers.py", line 258, in assertWriters
497s     test_write_string(self, mol, conv, expected_output, normalize)
497s   File "/tmp/autopkgtest.pZT816/build.VIt/src/test/testobconv_writers.py", line 165, in test_write_string
497s     test_case.assertMultiLineEqual(output.replace("\r\n", "\n"), expected_output.replace("\r\n", "\n"))
497s AssertionError: '{\n [1926 chars]102014\n              ],\n              "y": [[1070 chars]]\n}' != '{\n [1926 chars]102012\n              ],\n              "y": [[1070 chars]]\n}'
497s   {
497s     "PC_Compounds": [
497s       {
497s         "atoms": {
497s           "aids": [
497s             1,
497s             2,
497s             3,
497s             4,
497s             5,
497s             6,
497s             7,
497s             8,
497s             9,
497s             10,
497s             11,
497s             12,
497s             13
497s           ],
497s           "element": [
497s             6,
497s             6,
497s             6,
497s             6,
497s             6,
497s             6,
497s             8,
497s             1,
497s             1,
497s             1,
497s             1,
497s             1,
497s             1
497s           ]
497s         },
497s         "bonds": {
497s           "aid1": [
497s             1,
497s             1,
497s             2,
497s             3,
497s             4,
497s             5,
497s             6,
497s             1,
497s             2,
497s             3,
497s             4,
497s             5,
497s             7
497s           ],
497s           "aid2": [
497s             6,
497s             2,
497s             3,
497s             4,
497s             5,
497s             6,
497s             7,
497s             8,
497s             9,
497s             10,
497s             11,
497s             12,
497s             13
497s           ],
497s           "order": [
497s             2,
497s             1,
497s             2,
497s             1,
497s             2,
497s             1,
497s             1,
497s             1,
497s             1,
497s             1,
497s             1,
497s             1,
497s             1
497s           ]
497s         },
497s         "coords": [
497s           {
497s             "type": [
497s               1
497s             ],
497s             "aids": [
497s               1,
497s               2,
497s               3,
497s               4,
497s               5,
497s               6,
497s               7,
497s               8,
497s               9,
497s               10,
497s               11,
497s               12,
497s               13
497s             ],
497s             "conformers": [
497s               {
497s                 "x": [
497s                   1.5846,
497s                   1.5703,
497s                   2.4295,
497s                   3.3031,
497s                   3.3175,
497s                   0.0,
497s                   -1.0005,
497s                   2.313816216007316,
497s                   0.669250157347277,
497s                   2.4146659588503769,
497s                   4.189331679349326,
497s                   4.052466878708012,
497s -                 -1.4648575597102014
497s ?                                   ^
497s +                 -1.4648575597102012
497s ?                                   ^
497s                 ],
497s                 "y": [
497s                   1.5846,
497s                   1.5703,
497s                   2.4295,
497s                   3.3031,
497s                   3.3175,
497s                   0.0,
497s                   -1.0005,
497s                   2.313816216007316,
497s                   0.669250157347277,
497s                   2.4146659588503769,
497s                   4.189331679349326,
497s                   4.052466878708012,
497s -                 -1.4648575597102014
497s ?                                   ^
497s +                 -1.4648575597102012
497s ?                                   ^
497s                 ],
497s                 "style": {
497s                   "annotation": [
497s                     8,
497s                     8,
497s                     8,
497s                     8,
497s                     8,
497s                     8
497s                   ],
497s                   "aid1": [
497s                     1,
497s                     1,
497s                     2,
497s                     3,
497s                     4,
497s                     5
497s                   ],
497s                   "aid2": [
497s                     6,
497s                     2,
497s                     3,
497s                     4,
497s                     5,
497s                     6
497s                   ]
497s                 }
497s               }
497s             ]
497s           }
497s         ],
497s         "charge": 0
497s       }
497s     ]
497s   }
497s 
497s 
497s ----------------------------------------------------------------------
497s Ran 141 tests in 0.176s
497s 
497s FAILED (failures=1)
497s /tmp/autopkgtest.pZT816/build.VIt/src/test/testpcjsonformat.py:1: SyntaxWarning: invalid escape sequence '\P'
497s   """Test PubChem JSON format using the OpenBabel Python bindings
498s .................
498s ----------------------------------------------------------------------
498s Ran 17 tests in 0.016s
498s 
498s OK
498s Running test/testpdbformat.py ...
498s /tmp/autopkgtest.pZT816/build.VIt/src/test/testpdbformat.py:1: SyntaxWarning: invalid escape sequence '\P'
498s   """Test OpenBabel executables from Python
498s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
498s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
498s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
498s   self.stdout = io.open(c2pread, 'rb', bufsize)
498s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
498s   self.stderr = io.open(errread, 'rb', bufsize)
498s .
498s ----------------------------------------------------------------------
498s Ran 1 test in 0.022s
498s 
498s OK
498s Skipping test/testroundtrip.py ...
498s Running test/testsmartssym.py ...
498s /tmp/autopkgtest.pZT816/build.VIt/src/test/testsmartssym.py:1: SyntaxWarning: invalid escape sequence '\P'
498s   """Test OpenBabel executables from Python
498s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
498s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
498s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
498s   self.stdout = io.open(c2pread, 'rb', bufsize)
498s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
498s   self.stderr = io.open(errread, 'rb', bufsize)
499s ....
499s ----------------------------------------------------------------------
499s Ran 4 tests in 0.947s
499s 
499s OK
499s Skipping test/testsym.py ...
499s Running test/testunique.py ...
499s /tmp/autopkgtest.pZT816/build.VIt/src/test/testunique.py:1: SyntaxWarning: invalid escape sequence '\P'
499s   """Test OpenBabel executables from Python
499s /tmp/autopkgtest.pZT816/build.VIt/src/test/testunique.py:26: SyntaxWarning: invalid escape sequence '\F'
499s   self.smiles = """C	methane
499s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
499s   self.stdin = io.open(p2cwrite, 'wb', bufsize)
499s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
499s   self.stdout = io.open(c2pread, 'rb', bufsize)
499s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
499s   self.stderr = io.open(errread, 'rb', bufsize)
499s .
499s ----------------------------------------------------------------------
499s Ran 1 test in 0.186s
499s 
499s OK
499s autopkgtest [04:47:05]: test python3: -----------------------]
500s autopkgtest [04:47:06]: test python3:  - - - - - - - - - - results - - - - - - - - - -
500s python3              PASS
500s autopkgtest [04:47:06]: @@@@@@@@@@@@@@@@@@@@ summary
500s python3              PASS
512s Creating nova instance adt-noble-arm64-openbabel-20240311-043846-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240311.img (UUID 900cfff9-7f1a-42c7-81a7-22635cd2a5f9)...