0s autopkgtest [02:03:29]: starting date and time: 2024-03-24 02:03:29+0000 0s autopkgtest [02:03:29]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:03:29]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8kvq6wqb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:mpich,src:pmix,src:slurm-wlm --apt-upgrade nwchem --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=mpich/4.2.0-5build2 pmix/5.0.1-4.1 slurm-wlm/23.11.4-1.2ubuntu3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-4.secgroup --name adt-noble-arm64-nwchem-20240324-020329-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 131s autopkgtest [02:05:40]: testbed dpkg architecture: arm64 131s autopkgtest [02:05:40]: testbed apt version: 2.7.12 131s autopkgtest [02:05:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 132s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 133s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 133s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 133s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 133s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3988 kB] 133s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [707 kB] 133s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 133s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 133s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 133s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4366 kB] 133s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 133s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 133s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 135s Fetched 9850 kB in 2s (6064 kB/s) 136s Reading package lists... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s Calculating upgrade... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s sh: Attempting to set up Debian/Ubuntu apt sources automatically 141s sh: Distribution appears to be Ubuntu 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s eatmydata is already the newest version (131-1). 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s dbus is already the newest version (1.14.10-4ubuntu1). 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s rng-tools-debian is already the newest version (2.4). 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s The following packages will be REMOVED: 145s cloud-init* python3-configobj* python3-debconf* 145s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 145s After this operation, 3256 kB disk space will be freed. 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 145s Removing cloud-init (24.1.2-0ubuntu1) ... 146s Removing python3-configobj (5.0.8-3) ... 146s Removing python3-debconf (1.5.86) ... 146s Processing triggers for man-db (2.12.0-3) ... 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75522 files and directories currently installed.) 146s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 147s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 147s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 147s invoke-rc.d: policy-rc.d denied execution of try-restart. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s linux-generic is already the newest version (6.8.0-11.11+1). 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 148s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 148s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 151s Reading package lists... 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Calculating upgrade... 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s autopkgtest [02:06:02]: rebooting testbed after setup commands that affected boot 303s autopkgtest [02:08:32]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 306s autopkgtest [02:08:35]: @@@@@@@@@@@@@@@@@@@@ apt-source nwchem 314s Get:1 http://ftpmaster.internal/ubuntu noble/universe nwchem 7.2.2-1build1 (dsc) [2611 B] 314s Get:2 http://ftpmaster.internal/ubuntu noble/universe nwchem 7.2.2-1build1 (tar) [167 MB] 314s Get:3 http://ftpmaster.internal/ubuntu noble/universe nwchem 7.2.2-1build1 (diff) [559 kB] 314s gpgv: Signature made Fri Jan 19 20:33:59 2024 UTC 314s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 314s gpgv: Can't check signature: No public key 314s dpkg-source: warning: cannot verify inline signature for ./nwchem_7.2.2-1build1.dsc: no acceptable signature found 364s autopkgtest [02:09:33]: testing package nwchem version 7.2.2-1build1 365s autopkgtest [02:09:34]: build not needed 430s autopkgtest [02:10:39]: test testsuite.sh: preparing testbed 447s Reading package lists... 447s Building dependency tree... 447s Reading state information... 448s Starting pkgProblemResolver with broken count: 0 448s Starting 2 pkgProblemResolver with broken count: 0 448s Done 448s The following additional packages will be installed: 448s libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 448s libevent-pthreads-2.1-7 libfabric1 libgfortran5 libhsa-runtime64-1 448s libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 libllvm17 libmunge2 448s libopenmpi3 libpciaccess0 libpmix2 libpython3.12 librdmacm1t64 448s libscalapack-openmpi2.2 libucx0 libxnvctrl0 mpi-default-bin nwchem 448s nwchem-data nwchem-openmpi ocl-icd-libopencl1 openmpi-bin openmpi-common 448s Suggested packages: 448s scalapack-doc opencl-icd gfortran | fortran-compiler 448s The following NEW packages will be installed: 448s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libatomic1 libblas3 448s libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libgfortran5 448s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 448s libllvm17 libmunge2 libopenmpi3 libpciaccess0 libpmix2 libpython3.12 448s librdmacm1t64 libscalapack-openmpi2.2 libucx0 libxnvctrl0 mpi-default-bin 448s nwchem nwchem-data nwchem-openmpi ocl-icd-libopencl1 openmpi-bin 448s openmpi-common 448s 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. 448s Need to get 76.3 MB/76.3 MB of archives. 448s After this operation, 353 MB of additional disk space will be used. 448s Get:1 /tmp/autopkgtest.hhcKwK/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [752 B] 449s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 450s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 450s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 450s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 450s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 450s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 450s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 450s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 450s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 450s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 450s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3build1 [541 kB] 450s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 450s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 450s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 450s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 450s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 450s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 450s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 450s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 450s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB] 451s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 451s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB] 451s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 451s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB] 451s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB] 451s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 451s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libscalapack-openmpi2.2 arm64 2.2.1-3 [1580 kB] 451s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 nwchem-data all 7.2.2-1build1 [6095 kB] 451s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 nwchem-openmpi arm64 7.2.2-1build1 [12.8 MB] 451s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 nwchem all 7.2.2-1build1 [18.8 kB] 452s Fetched 76.3 MB in 3s (26.1 MB/s) 452s Selecting previously unselected package libllvm17:arm64. 452s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75467 files and directories currently installed.) 452s Preparing to unpack .../00-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 452s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 452s Selecting previously unselected package libamd-comgr2:arm64. 452s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 452s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 453s Selecting previously unselected package libdrm-amdgpu1:arm64. 453s Preparing to unpack .../02-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 453s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 453s Selecting previously unselected package libhsakmt1:arm64. 453s Preparing to unpack .../03-libhsakmt1_5.7.0-1_arm64.deb ... 453s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 453s Selecting previously unselected package libhsa-runtime64-1. 453s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 453s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 453s Selecting previously unselected package libamdhip64-5. 453s Preparing to unpack .../05-libamdhip64-5_5.2.3-12_arm64.deb ... 453s Unpacking libamdhip64-5 (5.2.3-12) ... 453s Selecting previously unselected package libatomic1:arm64. 453s Preparing to unpack .../06-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 453s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 453s Selecting previously unselected package libblas3:arm64. 453s Preparing to unpack .../07-libblas3_3.12.0-3_arm64.deb ... 453s Unpacking libblas3:arm64 (3.12.0-3) ... 453s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 453s Preparing to unpack .../08-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 453s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 453s Selecting previously unselected package librdmacm1t64:arm64. 453s Preparing to unpack .../09-librdmacm1t64_50.0-2_arm64.deb ... 453s Unpacking librdmacm1t64:arm64 (50.0-2) ... 453s Selecting previously unselected package libfabric1:arm64. 453s Preparing to unpack .../10-libfabric1_1.17.0-3build1_arm64.deb ... 453s Unpacking libfabric1:arm64 (1.17.0-3build1) ... 453s Selecting previously unselected package libgfortran5:arm64. 453s Preparing to unpack .../11-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 453s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 453s Selecting previously unselected package libhwloc15:arm64. 453s Preparing to unpack .../12-libhwloc15_2.10.0-1_arm64.deb ... 453s Unpacking libhwloc15:arm64 (2.10.0-1) ... 453s Selecting previously unselected package liblapack3:arm64. 453s Preparing to unpack .../13-liblapack3_3.12.0-3_arm64.deb ... 453s Unpacking liblapack3:arm64 (3.12.0-3) ... 453s Selecting previously unselected package libmunge2:arm64. 453s Preparing to unpack .../14-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 453s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 453s Selecting previously unselected package libpciaccess0:arm64. 453s Preparing to unpack .../15-libpciaccess0_0.17-3_arm64.deb ... 453s Unpacking libpciaccess0:arm64 (0.17-3) ... 453s Selecting previously unselected package libxnvctrl0:arm64. 453s Preparing to unpack .../16-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 453s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 453s Selecting previously unselected package ocl-icd-libopencl1:arm64. 453s Preparing to unpack .../17-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 453s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 453s Selecting previously unselected package libhwloc-plugins:arm64. 453s Preparing to unpack .../18-libhwloc-plugins_2.10.0-1_arm64.deb ... 453s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 453s Selecting previously unselected package libpmix2:arm64. 453s Preparing to unpack .../19-libpmix2_5.0.1-4_arm64.deb ... 453s Unpacking libpmix2:arm64 (5.0.1-4) ... 453s Selecting previously unselected package libucx0:arm64. 453s Preparing to unpack .../20-libucx0_1.16.0+ds-4_arm64.deb ... 453s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 453s Selecting previously unselected package libopenmpi3:arm64. 453s Preparing to unpack .../21-libopenmpi3_4.1.6-5ubuntu1_arm64.deb ... 453s Unpacking libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 453s Selecting previously unselected package libpython3.12:arm64. 453s Preparing to unpack .../22-libpython3.12_3.12.2-1_arm64.deb ... 453s Unpacking libpython3.12:arm64 (3.12.2-1) ... 453s Selecting previously unselected package openmpi-common. 453s Preparing to unpack .../23-openmpi-common_4.1.6-5ubuntu1_all.deb ... 453s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 453s Selecting previously unselected package openmpi-bin. 453s Preparing to unpack .../24-openmpi-bin_4.1.6-5ubuntu1_arm64.deb ... 453s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 454s Selecting previously unselected package mpi-default-bin. 454s Preparing to unpack .../25-mpi-default-bin_1.15_arm64.deb ... 454s Unpacking mpi-default-bin (1.15) ... 454s Selecting previously unselected package libscalapack-openmpi2.2:arm64. 454s Preparing to unpack .../26-libscalapack-openmpi2.2_2.2.1-3_arm64.deb ... 454s Unpacking libscalapack-openmpi2.2:arm64 (2.2.1-3) ... 454s Selecting previously unselected package nwchem-data. 454s Preparing to unpack .../27-nwchem-data_7.2.2-1build1_all.deb ... 454s Unpacking nwchem-data (7.2.2-1build1) ... 454s Selecting previously unselected package nwchem-openmpi. 454s Preparing to unpack .../28-nwchem-openmpi_7.2.2-1build1_arm64.deb ... 454s Unpacking nwchem-openmpi (7.2.2-1build1) ... 454s Selecting previously unselected package nwchem. 454s Preparing to unpack .../29-nwchem_7.2.2-1build1_all.deb ... 454s Unpacking nwchem (7.2.2-1build1) ... 454s Selecting previously unselected package autopkgtest-satdep. 454s Preparing to unpack .../30-1-autopkgtest-satdep.deb ... 454s Unpacking autopkgtest-satdep (0) ... 454s Setting up libpciaccess0:arm64 (0.17-3) ... 454s Setting up nwchem-data (7.2.2-1build1) ... 454s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 454s Setting up libblas3:arm64 (3.12.0-3) ... 454s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 454s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 454s Setting up libhwloc15:arm64 (2.10.0-1) ... 454s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 454s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 454s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 454s Setting up openmpi-common (4.1.6-5ubuntu1) ... 454s Setting up librdmacm1t64:arm64 (50.0-2) ... 454s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 454s Setting up libpython3.12:arm64 (3.12.2-1) ... 454s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 454s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 454s Setting up libfabric1:arm64 (1.17.0-3build1) ... 454s Setting up liblapack3:arm64 (3.12.0-3) ... 454s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 454s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 454s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 454s Setting up libhsakmt1:arm64 (5.7.0-1) ... 454s Setting up libpmix2:arm64 (5.0.1-4) ... 454s Setting up libhsa-runtime64-1 (5.7.1-1) ... 454s Setting up libamdhip64-5 (5.2.3-12) ... 454s Setting up libucx0:arm64 (1.16.0+ds-4) ... 454s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 454s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 454s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 454s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 454s Setting up mpi-default-bin (1.15) ... 454s Setting up libscalapack-openmpi2.2:arm64 (2.2.1-3) ... 454s Setting up nwchem-openmpi (7.2.2-1build1) ... 454s Setting up nwchem (7.2.2-1build1) ... 454s Setting up autopkgtest-satdep (0) ... 454s Processing triggers for man-db (2.12.0-3) ... 455s Processing triggers for libc-bin (2.39-0ubuntu6) ... 458s (Reading database ... 77616 files and directories currently installed.) 458s Removing autopkgtest-satdep (0) ... 459s autopkgtest [02:11:08]: test testsuite.sh: [----------------------- 459s ===== TESTING NWCHEM WITH DEFAULT MPI INSTALLATION ===== 459s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 459s 459s 459s Running tests/cosmo_h3co/cosmo_h3co 459s 459s cleaning scratch 459s copying input and verified output files 459s running nwchem (/usr/bin/nwchem) with 1 processors 459s 479s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 479s OK 479s 479s Running tests/dft_he2+/dft_he2+ 479s 479s cleaning scratch 479s copying input and verified output files 479s running nwchem (/usr/bin/nwchem) with 1 processors 479s 515s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 515s OK 515s 515s Running tests/qmmm_grad0/qmmm_grad0 515s 515s cleaning scratch 515s copying input and verified output files 515s running nwchem (/usr/bin/nwchem) with 1 processors 515s 521s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 521s OK 521s 521s Running tests/auh2o/auh2o 521s 521s cleaning scratch 521s copying input and verified output files 521s running nwchem (/usr/bin/nwchem) with 1 processors 521s 524s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 524s OK 524s 524s Running tests/autosym/autosym 524s 524s cleaning scratch 524s copying input and verified output files 524s running nwchem (/usr/bin/nwchem) with 1 processors 524s 556s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 556s OK 556s 556s Running tests/h2mp2/h2mp2 556s 556s cleaning scratch 556s copying input and verified output files 556s running nwchem (/usr/bin/nwchem) with 1 processors 556s 561s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 561s OK 561s 561s Running tests/h2o/h2o 561s 561s cleaning scratch 561s copying input and verified output files 561s running nwchem (/usr/bin/nwchem) with 1 processors 561s 563s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 563s OK 563s 563s Running tests/hess_h2o/hess_h2o 563s 563s cleaning scratch 563s copying input and verified output files 563s running nwchem (/usr/bin/nwchem) with 1 processors 563s 578s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 578s OK 578s 578s Running tests/prop_h2o/prop_h2o 578s 578s cleaning scratch 578s copying input and verified output files 578s running nwchem (/usr/bin/nwchem) with 1 processors 578s 587s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 587s OK 587s 587s Running tests/geom_zmatrix/geom_zmatrix 587s 587s cleaning scratch 587s copying input and verified output files 587s running nwchem (/usr/bin/nwchem) with 1 processors 587s 592s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 592s OK 592s 592s Running tests/rimp2_ne/rimp2_ne 592s 592s cleaning scratch 592s copying input and verified output files 592s running nwchem (/usr/bin/nwchem) with 1 processors 592s 599s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 600s OK 600s 600s Running tests/small_intchk/small_intchk 600s 600s cleaning scratch 600s copying input and verified output files 600s running nwchem (/usr/bin/nwchem) with 1 processors 600s 607s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 607s OK 607s 607s Running tests/tagcheck/tagcheck 607s 607s cleaning scratch 607s copying input and verified output files 607s running nwchem (/usr/bin/nwchem) with 1 processors 607s 612s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 612s OK 612s 612s Running tests/testtab/testtab 612s 612s cleaning scratch 612s copying input and verified output files 612s running nwchem (/usr/bin/nwchem) with 1 processors 612s 614s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 614s OK 614s 614s Running tests/h2o_dk/h2o_dk 614s 614s cleaning scratch 614s copying input and verified output files 614s running nwchem (/usr/bin/nwchem) with 1 processors 614s 621s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 621s OK 621s 621s Running tests/cosmo_h2o/cosmo_h2o 621s 621s cleaning scratch 621s copying input and verified output files 621s running nwchem (/usr/bin/nwchem) with 1 processors 621s 624s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 624s OK 624s 624s Running tests/ch5n_nbo/ch5n_nbo 624s 624s cleaning scratch 624s copying input and verified output files 624s running nwchem (/usr/bin/nwchem) with 1 processors 624s 626s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 626s OK 626s 626s Running tests/h2s_finite/h2s_finite 626s 626s cleaning scratch 626s copying input and verified output files 626s running nwchem (/usr/bin/nwchem) with 1 processors 626s 632s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 632s OK 632s 632s Running tests/pyqa3/pyqa3 632s 632s cleaning scratch 632s copying input and verified output files 632s running nwchem (/usr/bin/nwchem) with 1 processors 632s 663s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 663s OK 663s 663s Running tests/startag/startag 663s 663s cleaning scratch 663s copying input and verified output files 663s running nwchem (/usr/bin/nwchem) with 1 processors 663s 666s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 666s OK 666s 666s Running tests/esp/esp 666s 666s cleaning scratch 666s copying input and verified output files 666s running nwchem (/usr/bin/nwchem) with 1 processors 666s 714s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 714s ESP charges match 714s 714s 714s Running tests/esp_uhf/esp_uhf 714s 714s cleaning scratch 714s copying input and verified output files 714s running nwchem (/usr/bin/nwchem) with 1 processors 714s 727s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 727s ESP charges match 727s 727s 727s Running tests/dft_bsse/dft_bsse 727s 727s cleaning scratch 727s copying input and verified output files 727s running nwchem (/usr/bin/nwchem) with 1 processors 727s 738s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 738s OK 738s 738s Running tests/dplot_dft/dplot_dft 738s 738s cleaning scratch 738s copying input and verified output files 738s running nwchem (/usr/bin/nwchem) with 1 processors 738s 740s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 740s OK 740s 740s Running tests/dft_meta/dft_meta 740s 740s cleaning scratch 740s copying input and verified output files 740s running nwchem (/usr/bin/nwchem) with 1 processors 740s 798s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 798s OK 798s 798s Running tests/dft_mpwb1khf/dft_mpwb1khf 798s 798s cleaning scratch 798s copying input and verified output files 798s running nwchem (/usr/bin/nwchem) with 1 processors 798s 844s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 844s OK 844s 844s Running tests/prop_uhf_h2o/prop_uhf_h2o 844s 844s cleaning scratch 844s copying input and verified output files 844s running nwchem (/usr/bin/nwchem) with 1 processors 844s 910s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 910s OK 910s 910s Running tests/et_zn_dimer/et_zn_dimer 910s 910s cleaning scratch 910s copying input and verified output files 910s running nwchem (/usr/bin/nwchem) with 1 processors 910s 949s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 949s OK 949s 949s Running tests/vectors_rotate/vectors_rotate 949s 949s cleaning scratch 949s copying input and verified output files 949s running nwchem (/usr/bin/nwchem) with 1 processors 949s 954s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 954s OK 954s 954s Running tests/sad_ch3hf/sad_ch3hf 954s 954s cleaning scratch 954s copying input and verified output files 954s running nwchem (/usr/bin/nwchem) with 1 processors 954s 991s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 991s OK 991s 991s Running tests/band/band 991s 991s cleaning scratch 991s copying input and verified output files 991s running nwchem (/usr/bin/nwchem) with 1 processors 991s 1000s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1000s OK 1000s 1000s Running tests/pspw/pspw 1000s 1000s cleaning scratch 1000s copying input and verified output files 1000s running nwchem (/usr/bin/nwchem) with 1 processors 1000s 1016s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1016s OK 1016s 1016s Running tests/pspw_md/pspw_md 1016s 1016s cleaning scratch 1016s copying input and verified output files 1016s running nwchem (/usr/bin/nwchem) with 1 processors 1016s 1035s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1035s OK 1035s 1035s Running tests/pspw_stress/pspw_stress 1035s 1035s cleaning scratch 1035s copying input and verified output files 1035s running nwchem (/usr/bin/nwchem) with 1 processors 1035s 1056s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1056s OK 1056s 1056s Running tests/mcscf_ch2/mcscf_ch2 1056s 1056s cleaning scratch 1056s copying input and verified output files 1056s running nwchem (/usr/bin/nwchem) with 1 processors 1056s 1128s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1128s OK 1128s 1128s Running tests/dft_li2freq/dft_li2freq 1128s 1128s cleaning scratch 1128s copying input and verified output files 1128s running nwchem (/usr/bin/nwchem) with 1 processors 1128s 1193s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1193s OK 1193s 1193s Running tests/n2_ccsd/n2_ccsd 1193s 1193s cleaning scratch 1193s copying input and verified output files 1193s running nwchem (/usr/bin/nwchem) with 1 processors 1193s 1261s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1261s OK 1261s 1261s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 1261s 1261s cleaning scratch 1261s copying input and verified output files 1261s running nwchem (/usr/bin/nwchem) with 1 processors 1261s 1265s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1265s OK 1265s 1265s Running tests/tddft_h2o/tddft_h2o 1265s 1265s cleaning scratch 1265s copying input and verified output files 1265s running nwchem (/usr/bin/nwchem) with 1 processors 1265s 1309s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1309s OK 1309s 1309s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 1309s 1309s cleaning scratch 1309s copying input and verified output files 1309s running nwchem (/usr/bin/nwchem) with 1 processors 1309s 2012s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2012s OK 2012s 2012s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 2012s 2012s cleaning scratch 2012s copying input and verified output files 2012s running nwchem (/usr/bin/nwchem) with 1 processors 2012s 2028s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2028s OK 2028s 2028s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 2028s 2028s cleaning scratch 2028s copying input and verified output files 2028s running nwchem (/usr/bin/nwchem) with 1 processors 2028s 2033s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2033s OK 2033s 2033s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 2033s 2033s cleaning scratch 2033s copying input and verified output files 2033s running nwchem (/usr/bin/nwchem) with 1 processors 2033s 2092s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2092s OK 2092s 2092s Running tests/mp2_scs_n2/mp2_scs_n2 2092s 2092s cleaning scratch 2092s copying input and verified output files 2092s running nwchem (/usr/bin/nwchem) with 1 processors 2092s 2116s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2116s OK 2116s 2116s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 2116s 2116s cleaning scratch 2116s copying input and verified output files 2116s running nwchem (/usr/bin/nwchem) with 1 processors 2116s 2164s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2164s OK 2164s 2164s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 2164s 2164s cleaning scratch 2164s copying input and verified output files 2164s running nwchem (/usr/bin/nwchem) with 1 processors 2164s 2177s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2177s OK 2177s 2177s Running tests/water/water_md 2177s 2177s cleaning scratch 2177s copying input and verified output files 2177s running nwchem (/usr/bin/nwchem) with 1 processors 2177s 2177s verifying nwout ...... skipped 2177s verifying test ....... completed 2177s 2177s Running tests/water/water_pme 2177s 2177s cleaning scratch 2177s copying input and verified output files 2177s running nwchem (/usr/bin/nwchem) with 1 processors 2177s 2177s verifying nwout ...... skipped 2177s verifying test ....... completed 2177s 2177s OK 2177s autopkgtest [02:39:46]: test testsuite.sh: -----------------------] 2178s testsuite.sh PASS 2178s autopkgtest [02:39:47]: test testsuite.sh: - - - - - - - - - - results - - - - - - - - - - 2178s autopkgtest [02:39:47]: test testsuite-openmpi: preparing testbed 2280s autopkgtest [02:41:29]: testbed dpkg architecture: arm64 2280s autopkgtest [02:41:29]: testbed apt version: 2.7.12 2280s autopkgtest [02:41:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 2281s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 2281s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4043 kB] 2282s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 2282s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 2282s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 2282s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [707 kB] 2282s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 2282s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 2282s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 2282s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4363 kB] 2282s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 2282s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 2282s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 2284s Fetched 9903 kB in 2s (6005 kB/s) 2284s Reading package lists... 2287s Reading package lists... 2287s Building dependency tree... 2287s Reading state information... 2287s Calculating upgrade... 2288s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2288s Reading package lists... 2288s Building dependency tree... 2288s Reading state information... 2289s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2289s sh: Attempting to set up Debian/Ubuntu apt sources automatically 2289s sh: Distribution appears to be Ubuntu 2290s Reading package lists... 2290s Building dependency tree... 2290s Reading state information... 2291s eatmydata is already the newest version (131-1). 2291s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2291s Reading package lists... 2291s Building dependency tree... 2291s Reading state information... 2291s dbus is already the newest version (1.14.10-4ubuntu1). 2291s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2291s Reading package lists... 2292s Building dependency tree... 2292s Reading state information... 2292s rng-tools-debian is already the newest version (2.4). 2292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2292s Reading package lists... 2292s Building dependency tree... 2292s Reading state information... 2293s The following packages will be REMOVED: 2293s cloud-init* python3-configobj* python3-debconf* 2293s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 2293s After this operation, 3256 kB disk space will be freed. 2293s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 2293s Removing cloud-init (24.1.2-0ubuntu1) ... 2294s Removing python3-configobj (5.0.8-3) ... 2294s Removing python3-debconf (1.5.86) ... 2294s Processing triggers for man-db (2.12.0-3) ... 2294s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75522 files and directories currently installed.) 2294s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 2295s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 2295s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 2295s invoke-rc.d: policy-rc.d denied execution of try-restart. 2295s Reading package lists... 2295s Building dependency tree... 2295s Reading state information... 2296s linux-generic is already the newest version (6.8.0-11.11+1). 2296s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2296s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 2296s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 2296s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 2298s Reading package lists... 2298s Reading package lists... 2298s Building dependency tree... 2298s Reading state information... 2299s Calculating upgrade... 2299s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2299s Reading package lists... 2299s Building dependency tree... 2299s Reading state information... 2300s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2300s autopkgtest [02:41:49]: rebooting testbed after setup commands that affected boot 2456s Reading package lists... 2456s Building dependency tree... 2456s Reading state information... 2457s Starting pkgProblemResolver with broken count: 0 2457s Starting 2 pkgProblemResolver with broken count: 0 2457s Done 2457s The following additional packages will be installed: 2457s libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 2457s libevent-pthreads-2.1-7 libfabric1 libgfortran5 libhsa-runtime64-1 2457s libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 libllvm17 libmunge2 2457s libopenmpi3 libpciaccess0 libpmix2 libpython3.12 librdmacm1t64 2457s libscalapack-openmpi2.2 libucx0 libxnvctrl0 mpi-default-bin nwchem-data 2457s nwchem-openmpi ocl-icd-libopencl1 openmpi-bin openmpi-common 2457s Suggested packages: 2457s scalapack-doc opencl-icd gfortran | fortran-compiler 2457s The following NEW packages will be installed: 2457s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libatomic1 libblas3 2457s libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libgfortran5 2457s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 2457s libllvm17 libmunge2 libopenmpi3 libpciaccess0 libpmix2 libpython3.12 2457s librdmacm1t64 libscalapack-openmpi2.2 libucx0 libxnvctrl0 mpi-default-bin 2457s nwchem-data nwchem-openmpi ocl-icd-libopencl1 openmpi-bin openmpi-common 2457s 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. 2457s Need to get 76.2 MB/76.2 MB of archives. 2457s After this operation, 353 MB of additional disk space will be used. 2457s Get:1 /tmp/autopkgtest.hhcKwK/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [760 B] 2458s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 2459s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 2459s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 2459s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 2459s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 2459s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 2459s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 2459s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 2459s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 2459s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 2459s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3build1 [541 kB] 2459s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 2459s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 2459s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 2459s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 2459s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 2459s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 2459s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 2459s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 2459s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB] 2459s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 2459s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB] 2459s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 2460s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB] 2460s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB] 2460s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 2460s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libscalapack-openmpi2.2 arm64 2.2.1-3 [1580 kB] 2460s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 nwchem-data all 7.2.2-1build1 [6095 kB] 2460s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 nwchem-openmpi arm64 7.2.2-1build1 [12.8 MB] 2460s Fetched 76.2 MB in 3s (30.2 MB/s) 2460s Selecting previously unselected package libllvm17:arm64. 2460s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75467 files and directories currently installed.) 2460s Preparing to unpack .../00-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 2460s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 2461s Selecting previously unselected package libamd-comgr2:arm64. 2461s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 2461s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 2461s Selecting previously unselected package libdrm-amdgpu1:arm64. 2461s Preparing to unpack .../02-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 2461s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 2461s Selecting previously unselected package libhsakmt1:arm64. 2461s Preparing to unpack .../03-libhsakmt1_5.7.0-1_arm64.deb ... 2461s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 2461s Selecting previously unselected package libhsa-runtime64-1. 2461s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 2461s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 2461s Selecting previously unselected package libamdhip64-5. 2461s Preparing to unpack .../05-libamdhip64-5_5.2.3-12_arm64.deb ... 2461s Unpacking libamdhip64-5 (5.2.3-12) ... 2461s Selecting previously unselected package libatomic1:arm64. 2461s Preparing to unpack .../06-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 2461s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 2461s Selecting previously unselected package libblas3:arm64. 2461s Preparing to unpack .../07-libblas3_3.12.0-3_arm64.deb ... 2461s Unpacking libblas3:arm64 (3.12.0-3) ... 2462s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 2462s Preparing to unpack .../08-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 2462s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 2462s Selecting previously unselected package librdmacm1t64:arm64. 2462s Preparing to unpack .../09-librdmacm1t64_50.0-2_arm64.deb ... 2462s Unpacking librdmacm1t64:arm64 (50.0-2) ... 2462s Selecting previously unselected package libfabric1:arm64. 2462s Preparing to unpack .../10-libfabric1_1.17.0-3build1_arm64.deb ... 2462s Unpacking libfabric1:arm64 (1.17.0-3build1) ... 2462s Selecting previously unselected package libgfortran5:arm64. 2462s Preparing to unpack .../11-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 2462s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 2462s Selecting previously unselected package libhwloc15:arm64. 2462s Preparing to unpack .../12-libhwloc15_2.10.0-1_arm64.deb ... 2462s Unpacking libhwloc15:arm64 (2.10.0-1) ... 2462s Selecting previously unselected package liblapack3:arm64. 2462s Preparing to unpack .../13-liblapack3_3.12.0-3_arm64.deb ... 2462s Unpacking liblapack3:arm64 (3.12.0-3) ... 2462s Selecting previously unselected package libmunge2:arm64. 2462s Preparing to unpack .../14-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 2462s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 2462s Selecting previously unselected package libpciaccess0:arm64. 2462s Preparing to unpack .../15-libpciaccess0_0.17-3_arm64.deb ... 2462s Unpacking libpciaccess0:arm64 (0.17-3) ... 2462s Selecting previously unselected package libxnvctrl0:arm64. 2462s Preparing to unpack .../16-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 2462s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 2462s Selecting previously unselected package ocl-icd-libopencl1:arm64. 2462s Preparing to unpack .../17-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 2462s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 2462s Selecting previously unselected package libhwloc-plugins:arm64. 2462s Preparing to unpack .../18-libhwloc-plugins_2.10.0-1_arm64.deb ... 2462s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 2462s Selecting previously unselected package libpmix2:arm64. 2462s Preparing to unpack .../19-libpmix2_5.0.1-4_arm64.deb ... 2462s Unpacking libpmix2:arm64 (5.0.1-4) ... 2462s Selecting previously unselected package libucx0:arm64. 2462s Preparing to unpack .../20-libucx0_1.16.0+ds-4_arm64.deb ... 2462s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 2462s Selecting previously unselected package libopenmpi3:arm64. 2462s Preparing to unpack .../21-libopenmpi3_4.1.6-5ubuntu1_arm64.deb ... 2462s Unpacking libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 2462s Selecting previously unselected package libpython3.12:arm64. 2462s Preparing to unpack .../22-libpython3.12_3.12.2-1_arm64.deb ... 2462s Unpacking libpython3.12:arm64 (3.12.2-1) ... 2462s Selecting previously unselected package openmpi-common. 2462s Preparing to unpack .../23-openmpi-common_4.1.6-5ubuntu1_all.deb ... 2462s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 2462s Selecting previously unselected package openmpi-bin. 2462s Preparing to unpack .../24-openmpi-bin_4.1.6-5ubuntu1_arm64.deb ... 2462s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 2462s Selecting previously unselected package mpi-default-bin. 2462s Preparing to unpack .../25-mpi-default-bin_1.15_arm64.deb ... 2462s Unpacking mpi-default-bin (1.15) ... 2462s Selecting previously unselected package libscalapack-openmpi2.2:arm64. 2462s Preparing to unpack .../26-libscalapack-openmpi2.2_2.2.1-3_arm64.deb ... 2462s Unpacking libscalapack-openmpi2.2:arm64 (2.2.1-3) ... 2462s Selecting previously unselected package nwchem-data. 2462s Preparing to unpack .../27-nwchem-data_7.2.2-1build1_all.deb ... 2462s Unpacking nwchem-data (7.2.2-1build1) ... 2462s Selecting previously unselected package nwchem-openmpi. 2462s Preparing to unpack .../28-nwchem-openmpi_7.2.2-1build1_arm64.deb ... 2462s Unpacking nwchem-openmpi (7.2.2-1build1) ... 2463s Selecting previously unselected package autopkgtest-satdep. 2463s Preparing to unpack .../29-2-autopkgtest-satdep.deb ... 2463s Unpacking autopkgtest-satdep (0) ... 2463s Setting up libpciaccess0:arm64 (0.17-3) ... 2463s Setting up nwchem-data (7.2.2-1build1) ... 2463s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 2463s Setting up libblas3:arm64 (3.12.0-3) ... 2463s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 2463s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 2463s Setting up libhwloc15:arm64 (2.10.0-1) ... 2463s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 2463s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 2463s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 2463s Setting up openmpi-common (4.1.6-5ubuntu1) ... 2463s Setting up librdmacm1t64:arm64 (50.0-2) ... 2463s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 2463s Setting up libpython3.12:arm64 (3.12.2-1) ... 2463s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 2463s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 2463s Setting up libfabric1:arm64 (1.17.0-3build1) ... 2463s Setting up liblapack3:arm64 (3.12.0-3) ... 2463s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 2463s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 2463s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 2463s Setting up libhsakmt1:arm64 (5.7.0-1) ... 2463s Setting up libpmix2:arm64 (5.0.1-4) ... 2463s Setting up libhsa-runtime64-1 (5.7.1-1) ... 2463s Setting up libamdhip64-5 (5.2.3-12) ... 2463s Setting up libucx0:arm64 (1.16.0+ds-4) ... 2463s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 2463s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 2463s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 2463s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 2463s Setting up mpi-default-bin (1.15) ... 2463s Setting up libscalapack-openmpi2.2:arm64 (2.2.1-3) ... 2463s Setting up nwchem-openmpi (7.2.2-1build1) ... 2463s Setting up autopkgtest-satdep (0) ... 2463s Processing triggers for man-db (2.12.0-3) ... 2463s Processing triggers for libc-bin (2.39-0ubuntu6) ... 2466s (Reading database ... 77547 files and directories currently installed.) 2466s Removing autopkgtest-satdep (0) ... 2561s autopkgtest [02:46:10]: test testsuite-openmpi: [----------------------- 2561s ===== TESTING NWCHEM BUILD FOR openmpi ===== 2561s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2561s 2561s 2561s Running tests/cosmo_h3co/cosmo_h3co 2561s 2561s cleaning scratch 2561s copying input and verified output files 2561s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2561s 2582s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2582s OK 2582s 2582s Running tests/dft_he2+/dft_he2+ 2582s 2582s cleaning scratch 2582s copying input and verified output files 2582s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2582s 2617s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2617s OK 2617s 2617s Running tests/qmmm_grad0/qmmm_grad0 2617s 2617s cleaning scratch 2617s copying input and verified output files 2617s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2617s 2623s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2623s OK 2623s 2623s Running tests/auh2o/auh2o 2623s 2623s cleaning scratch 2623s copying input and verified output files 2623s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2623s 2626s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2626s OK 2626s 2626s Running tests/autosym/autosym 2626s 2626s cleaning scratch 2626s copying input and verified output files 2626s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2626s 2658s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2658s OK 2658s 2658s Running tests/h2mp2/h2mp2 2658s 2658s cleaning scratch 2658s copying input and verified output files 2658s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2658s 2664s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2664s OK 2664s 2664s Running tests/h2o/h2o 2664s 2664s cleaning scratch 2664s copying input and verified output files 2664s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2664s 2665s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2665s OK 2665s 2665s Running tests/hess_h2o/hess_h2o 2665s 2665s cleaning scratch 2665s copying input and verified output files 2665s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2665s 2681s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2681s OK 2681s 2681s Running tests/prop_h2o/prop_h2o 2681s 2681s cleaning scratch 2681s copying input and verified output files 2681s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2681s 2689s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2689s OK 2689s 2689s Running tests/geom_zmatrix/geom_zmatrix 2689s 2689s cleaning scratch 2689s copying input and verified output files 2689s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2689s 2694s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2694s OK 2694s 2694s Running tests/rimp2_ne/rimp2_ne 2694s 2694s cleaning scratch 2694s copying input and verified output files 2694s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2694s 2700s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2700s OK 2700s 2700s Running tests/small_intchk/small_intchk 2700s 2700s cleaning scratch 2700s copying input and verified output files 2700s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2700s 2709s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2709s OK 2709s 2709s Running tests/tagcheck/tagcheck 2709s 2709s cleaning scratch 2709s copying input and verified output files 2709s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2709s 2714s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2714s OK 2714s 2714s Running tests/testtab/testtab 2714s 2714s cleaning scratch 2714s copying input and verified output files 2714s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2714s 2716s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2716s OK 2716s 2716s Running tests/h2o_dk/h2o_dk 2716s 2716s cleaning scratch 2716s copying input and verified output files 2716s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2716s 2723s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2723s OK 2723s 2723s Running tests/cosmo_h2o/cosmo_h2o 2723s 2723s cleaning scratch 2723s copying input and verified output files 2723s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2723s 2726s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2726s OK 2726s 2726s Running tests/ch5n_nbo/ch5n_nbo 2726s 2726s cleaning scratch 2726s copying input and verified output files 2726s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2726s 2728s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2728s OK 2728s 2728s Running tests/h2s_finite/h2s_finite 2728s 2728s cleaning scratch 2728s copying input and verified output files 2728s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2728s 2735s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2735s OK 2735s 2735s Running tests/pyqa3/pyqa3 2735s 2735s cleaning scratch 2735s copying input and verified output files 2735s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2735s 2744s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2744s OK 2744s 2744s Running tests/startag/startag 2744s 2744s cleaning scratch 2744s copying input and verified output files 2744s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2744s 2747s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2747s OK 2747s 2747s Running tests/esp/esp 2747s 2747s cleaning scratch 2747s copying input and verified output files 2747s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2747s 2750s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2750s ESP charges match 2750s 2750s 2750s Running tests/esp_uhf/esp_uhf 2750s 2750s cleaning scratch 2750s copying input and verified output files 2750s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2750s 2755s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2755s ESP charges match 2755s 2755s 2755s Running tests/dft_bsse/dft_bsse 2755s 2755s cleaning scratch 2755s copying input and verified output files 2755s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2755s 2761s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2761s OK 2761s 2761s Running tests/dplot_dft/dplot_dft 2761s 2761s cleaning scratch 2761s copying input and verified output files 2761s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2761s 2763s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2763s OK 2763s 2763s Running tests/dft_meta/dft_meta 2763s 2763s cleaning scratch 2763s copying input and verified output files 2763s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2763s 2820s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2820s OK 2820s 2820s Running tests/dft_mpwb1khf/dft_mpwb1khf 2820s 2820s cleaning scratch 2820s copying input and verified output files 2820s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2820s 2829s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2829s OK 2829s 2829s Running tests/prop_uhf_h2o/prop_uhf_h2o 2829s 2829s cleaning scratch 2829s copying input and verified output files 2829s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2829s 2893s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2893s OK 2893s 2893s Running tests/et_zn_dimer/et_zn_dimer 2893s 2893s cleaning scratch 2893s copying input and verified output files 2893s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2893s 2932s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2932s OK 2932s 2932s Running tests/vectors_rotate/vectors_rotate 2932s 2932s cleaning scratch 2932s copying input and verified output files 2932s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2932s 2937s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2937s OK 2937s 2937s Running tests/sad_ch3hf/sad_ch3hf 2937s 2937s cleaning scratch 2937s copying input and verified output files 2937s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2937s 2974s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2974s OK 2974s 2974s Running tests/band/band 2974s 2974s cleaning scratch 2974s copying input and verified output files 2974s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2974s 2982s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2982s OK 2982s 2982s Running tests/pspw/pspw 2982s 2982s cleaning scratch 2982s copying input and verified output files 2982s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2982s 2998s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2998s OK 2998s 2998s Running tests/pspw_md/pspw_md 2998s 2998s cleaning scratch 2998s copying input and verified output files 2999s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2999s 3017s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3017s OK 3017s 3017s Running tests/pspw_stress/pspw_stress 3017s 3017s cleaning scratch 3017s copying input and verified output files 3017s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3017s 3038s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3038s OK 3038s 3038s Running tests/mcscf_ch2/mcscf_ch2 3038s 3038s cleaning scratch 3038s copying input and verified output files 3038s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3038s 3109s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3109s OK 3109s 3109s Running tests/dft_li2freq/dft_li2freq 3109s 3109s cleaning scratch 3109s copying input and verified output files 3109s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3109s 3175s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3175s OK 3175s 3175s Running tests/n2_ccsd/n2_ccsd 3175s 3175s cleaning scratch 3175s copying input and verified output files 3175s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3175s 3241s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3241s OK 3241s 3241s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 3241s 3241s cleaning scratch 3241s copying input and verified output files 3241s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3241s 3245s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3245s OK 3245s 3245s Running tests/tddft_h2o/tddft_h2o 3245s 3245s cleaning scratch 3245s copying input and verified output files 3245s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3245s 3289s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3289s OK 3289s 3289s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 3289s 3289s cleaning scratch 3289s copying input and verified output files 3289s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3289s 3982s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3982s OK 3982s 3982s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 3982s 3982s cleaning scratch 3982s copying input and verified output files 3982s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3982s 3998s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3998s OK 3998s 3998s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 3998s 3998s cleaning scratch 3998s copying input and verified output files 3998s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 3998s 4002s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4002s OK 4002s 4002s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 4002s 4002s cleaning scratch 4002s copying input and verified output files 4002s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 4002s 4060s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4060s OK 4060s 4060s Running tests/mp2_scs_n2/mp2_scs_n2 4060s 4060s cleaning scratch 4060s copying input and verified output files 4060s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 4060s 4084s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4084s OK 4084s 4084s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 4084s 4084s cleaning scratch 4084s copying input and verified output files 4084s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 4084s 4130s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4130s OK 4130s 4130s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 4130s 4130s cleaning scratch 4130s copying input and verified output files 4130s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 4130s 4143s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4143s OK 4143s 4143s Running tests/water/water_md 4143s 4143s cleaning scratch 4143s copying input and verified output files 4143s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 4143s 4144s verifying nwout ...... skipped 4144s verifying test ....... completed 4144s 4144s Running tests/water/water_pme 4144s 4144s cleaning scratch 4144s copying input and verified output files 4144s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 4144s 4144s verifying nwout ...... skipped 4144s verifying test ....... completed 4144s 4144s OK 4144s autopkgtest [03:12:33]: test testsuite-openmpi: -----------------------] 4145s autopkgtest [03:12:34]: test testsuite-openmpi: - - - - - - - - - - results - - - - - - - - - - 4145s testsuite-openmpi PASS 4145s autopkgtest [03:12:34]: test testsuite-mpich: preparing testbed 4281s autopkgtest [03:14:50]: testbed dpkg architecture: arm64 4282s autopkgtest [03:14:51]: testbed apt version: 2.7.12 4282s autopkgtest [03:14:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 4283s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 4283s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 4283s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 4283s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 4283s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 4283s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [707 kB] 4283s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 4283s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 4283s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 4283s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4363 kB] 4283s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 4283s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 4283s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 4286s Fetched 9845 kB in 2s (6103 kB/s) 4286s Reading package lists... 4288s Reading package lists... 4288s Building dependency tree... 4288s Reading state information... 4289s Calculating upgrade... 4289s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4289s Reading package lists... 4290s Building dependency tree... 4290s Reading state information... 4290s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4291s sh: Attempting to set up Debian/Ubuntu apt sources automatically 4291s sh: Distribution appears to be Ubuntu 4291s Reading package lists... 4292s Building dependency tree... 4292s Reading state information... 4292s eatmydata is already the newest version (131-1). 4292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4292s Reading package lists... 4292s Building dependency tree... 4292s Reading state information... 4293s dbus is already the newest version (1.14.10-4ubuntu1). 4293s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4293s Reading package lists... 4293s Building dependency tree... 4293s Reading state information... 4294s rng-tools-debian is already the newest version (2.4). 4294s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4294s Reading package lists... 4294s Building dependency tree... 4294s Reading state information... 4297s The following packages will be REMOVED: 4297s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 4297s cloud-init* python3-configobj* python3-debconf* 4297s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 4297s After this operation, 3256 kB disk space will be freed. 4297s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 4297s Removing cloud-init (24.1.2-0ubuntu1) ... 4297s Removing python3-configobj (5.0.8-3) ... 4297s Removing python3-debconf (1.5.86) ... 4297s Processing triggers for man-db (2.12.0-3) ... 4297s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75522 files and directories currently installed.) 4297s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 4297s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 4297s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 4297s invoke-rc.d: policy-rc.d denied execution of try-restart. 4297s Reading package lists... 4297s Building dependency tree... 4297s Reading state information... 4297s linux-generic is already the newest version (6.8.0-11.11+1). 4297s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4297s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 4297s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 4299s Reading package lists... 4299s Reading package lists... 4307s Building dependency tree... 4307s Reading state information...autopkgtest [03:15:10]: rebooting testbed after setup commands that affected boot 4307s 4307s Calculating upgrade... 4307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4307s Reading package lists... 4307s Building dependency tree... 4307s Reading state information... 4307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4458s Reading package lists... 4459s Building dependency tree... 4459s Reading state information... 4459s Starting pkgProblemResolver with broken count: 0 4459s Starting 2 pkgProblemResolver with broken count: 0 4459s Done 4460s The following additional packages will be installed: 4460s hwloc-nox libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 4460s libevent-pthreads-2.1-7 libfabric1 libgfortran5 libhsa-runtime64-1 4460s libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 libllvm17 libmpich12 4460s libmunge2 libopenmpi3 libpciaccess0 libpmix2 libpython3.12 librdmacm1t64 4460s libscalapack-mpich2.2 libslurm40 libucx0 libxnvctrl0 mpi-default-bin mpich 4460s nwchem-data nwchem-mpich ocl-icd-libopencl1 openmpi-bin openmpi-common 4460s Suggested packages: 4460s scalapack-doc mpich-doc opencl-icd gfortran | fortran-compiler 4460s Recommended packages: 4460s libmpich-dev 4460s The following NEW packages will be installed: 4460s autopkgtest-satdep hwloc-nox libamd-comgr2 libamdhip64-5 libatomic1 libblas3 4460s libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libgfortran5 4460s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 4460s libllvm17 libmpich12 libmunge2 libopenmpi3 libpciaccess0 libpmix2 4460s libpython3.12 librdmacm1t64 libscalapack-mpich2.2 libslurm40 libucx0 4460s libxnvctrl0 mpi-default-bin mpich nwchem-data nwchem-mpich 4460s ocl-icd-libopencl1 openmpi-bin openmpi-common 4460s 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. 4460s Need to get 83.4 MB/83.4 MB of archives. 4460s After this operation, 393 MB of additional disk space will be used. 4460s Get:1 /tmp/autopkgtest.hhcKwK/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [760 B] 4460s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 4461s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 4461s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 4461s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 4461s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 4461s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 4461s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 4461s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 4461s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 4461s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 4461s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3build1 [541 kB] 4461s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 4461s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 4461s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 4461s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 4461s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 4462s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 4462s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 4462s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 4462s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB] 4462s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 4462s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB] 4462s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 4462s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB] 4462s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB] 4462s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 4462s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libmpich12 arm64 4.1.2-3 [6205 kB] 4462s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libscalapack-mpich2.2 arm64 2.2.1-3 [1577 kB] 4462s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 libslurm40 arm64 23.11.3-2ubuntu2 [545 kB] 4462s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 nwchem-data all 7.2.2-1build1 [6095 kB] 4462s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 hwloc-nox arm64 2.10.0-1 [207 kB] 4462s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 mpich arm64 4.1.2-3 [183 kB] 4462s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 nwchem-mpich arm64 7.2.2-1build1 [12.8 MB] 4463s Fetched 83.4 MB in 3s (29.8 MB/s) 4463s Selecting previously unselected package libllvm17:arm64. 4463s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75467 files and directories currently installed.) 4463s Preparing to unpack .../00-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 4463s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 4463s Selecting previously unselected package libamd-comgr2:arm64. 4463s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 4463s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 4464s Selecting previously unselected package libdrm-amdgpu1:arm64. 4464s Preparing to unpack .../02-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 4464s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 4464s Selecting previously unselected package libhsakmt1:arm64. 4464s Preparing to unpack .../03-libhsakmt1_5.7.0-1_arm64.deb ... 4464s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 4464s Selecting previously unselected package libhsa-runtime64-1. 4464s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 4464s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 4464s Selecting previously unselected package libamdhip64-5. 4464s Preparing to unpack .../05-libamdhip64-5_5.2.3-12_arm64.deb ... 4464s Unpacking libamdhip64-5 (5.2.3-12) ... 4464s Selecting previously unselected package libatomic1:arm64. 4464s Preparing to unpack .../06-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 4464s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 4464s Selecting previously unselected package libblas3:arm64. 4464s Preparing to unpack .../07-libblas3_3.12.0-3_arm64.deb ... 4464s Unpacking libblas3:arm64 (3.12.0-3) ... 4464s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 4464s Preparing to unpack .../08-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 4464s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 4464s Selecting previously unselected package librdmacm1t64:arm64. 4464s Preparing to unpack .../09-librdmacm1t64_50.0-2_arm64.deb ... 4464s Unpacking librdmacm1t64:arm64 (50.0-2) ... 4464s Selecting previously unselected package libfabric1:arm64. 4464s Preparing to unpack .../10-libfabric1_1.17.0-3build1_arm64.deb ... 4464s Unpacking libfabric1:arm64 (1.17.0-3build1) ... 4464s Selecting previously unselected package libgfortran5:arm64. 4464s Preparing to unpack .../11-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 4464s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 4464s Selecting previously unselected package libhwloc15:arm64. 4464s Preparing to unpack .../12-libhwloc15_2.10.0-1_arm64.deb ... 4464s Unpacking libhwloc15:arm64 (2.10.0-1) ... 4464s Selecting previously unselected package liblapack3:arm64. 4464s Preparing to unpack .../13-liblapack3_3.12.0-3_arm64.deb ... 4464s Unpacking liblapack3:arm64 (3.12.0-3) ... 4464s Selecting previously unselected package libmunge2:arm64. 4464s Preparing to unpack .../14-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 4464s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 4464s Selecting previously unselected package libpciaccess0:arm64. 4464s Preparing to unpack .../15-libpciaccess0_0.17-3_arm64.deb ... 4464s Unpacking libpciaccess0:arm64 (0.17-3) ... 4464s Selecting previously unselected package libxnvctrl0:arm64. 4464s Preparing to unpack .../16-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 4464s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 4464s Selecting previously unselected package ocl-icd-libopencl1:arm64. 4464s Preparing to unpack .../17-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 4464s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 4464s Selecting previously unselected package libhwloc-plugins:arm64. 4464s Preparing to unpack .../18-libhwloc-plugins_2.10.0-1_arm64.deb ... 4464s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 4464s Selecting previously unselected package libpmix2:arm64. 4464s Preparing to unpack .../19-libpmix2_5.0.1-4_arm64.deb ... 4464s Unpacking libpmix2:arm64 (5.0.1-4) ... 4464s Selecting previously unselected package libucx0:arm64. 4464s Preparing to unpack .../20-libucx0_1.16.0+ds-4_arm64.deb ... 4464s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 4464s Selecting previously unselected package libopenmpi3:arm64. 4464s Preparing to unpack .../21-libopenmpi3_4.1.6-5ubuntu1_arm64.deb ... 4464s Unpacking libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 4464s Selecting previously unselected package libpython3.12:arm64. 4464s Preparing to unpack .../22-libpython3.12_3.12.2-1_arm64.deb ... 4464s Unpacking libpython3.12:arm64 (3.12.2-1) ... 4465s Selecting previously unselected package openmpi-common. 4465s Preparing to unpack .../23-openmpi-common_4.1.6-5ubuntu1_all.deb ... 4465s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 4465s Selecting previously unselected package openmpi-bin. 4465s Preparing to unpack .../24-openmpi-bin_4.1.6-5ubuntu1_arm64.deb ... 4465s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 4465s Selecting previously unselected package mpi-default-bin. 4465s Preparing to unpack .../25-mpi-default-bin_1.15_arm64.deb ... 4465s Unpacking mpi-default-bin (1.15) ... 4465s Selecting previously unselected package libmpich12:arm64. 4465s Preparing to unpack .../26-libmpich12_4.1.2-3_arm64.deb ... 4465s Unpacking libmpich12:arm64 (4.1.2-3) ... 4465s Selecting previously unselected package libscalapack-mpich2.2:arm64. 4465s Preparing to unpack .../27-libscalapack-mpich2.2_2.2.1-3_arm64.deb ... 4465s Unpacking libscalapack-mpich2.2:arm64 (2.2.1-3) ... 4465s Selecting previously unselected package libslurm40. 4465s Preparing to unpack .../28-libslurm40_23.11.3-2ubuntu2_arm64.deb ... 4465s Unpacking libslurm40 (23.11.3-2ubuntu2) ... 4465s Selecting previously unselected package nwchem-data. 4465s Preparing to unpack .../29-nwchem-data_7.2.2-1build1_all.deb ... 4465s Unpacking nwchem-data (7.2.2-1build1) ... 4465s Selecting previously unselected package hwloc-nox. 4465s Preparing to unpack .../30-hwloc-nox_2.10.0-1_arm64.deb ... 4465s Unpacking hwloc-nox (2.10.0-1) ... 4465s Selecting previously unselected package mpich. 4465s Preparing to unpack .../31-mpich_4.1.2-3_arm64.deb ... 4465s Unpacking mpich (4.1.2-3) ... 4465s Selecting previously unselected package nwchem-mpich. 4465s Preparing to unpack .../32-nwchem-mpich_7.2.2-1build1_arm64.deb ... 4465s Unpacking nwchem-mpich (7.2.2-1build1) ... 4466s Selecting previously unselected package autopkgtest-satdep. 4466s Preparing to unpack .../33-3-autopkgtest-satdep.deb ... 4466s Unpacking autopkgtest-satdep (0) ... 4466s Setting up libpciaccess0:arm64 (0.17-3) ... 4466s Setting up nwchem-data (7.2.2-1build1) ... 4466s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 4466s Setting up libslurm40 (23.11.3-2ubuntu2) ... 4466s Setting up libblas3:arm64 (3.12.0-3) ... 4466s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 4466s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 4466s Setting up libhwloc15:arm64 (2.10.0-1) ... 4466s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 4466s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 4466s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 4466s Setting up openmpi-common (4.1.6-5ubuntu1) ... 4466s Setting up librdmacm1t64:arm64 (50.0-2) ... 4466s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 4466s Setting up libpython3.12:arm64 (3.12.2-1) ... 4466s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 4466s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 4466s Setting up libfabric1:arm64 (1.17.0-3build1) ... 4466s Setting up liblapack3:arm64 (3.12.0-3) ... 4466s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 4466s Setting up hwloc-nox (2.10.0-1) ... 4466s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 4466s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 4466s Setting up libhsakmt1:arm64 (5.7.0-1) ... 4466s Setting up libpmix2:arm64 (5.0.1-4) ... 4466s Setting up libhsa-runtime64-1 (5.7.1-1) ... 4466s Setting up libamdhip64-5 (5.2.3-12) ... 4466s Setting up libucx0:arm64 (1.16.0+ds-4) ... 4466s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 4466s Setting up libmpich12:arm64 (4.1.2-3) ... 4466s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 4466s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 4466s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 4466s Setting up mpich (4.1.2-3) ... 4466s Setting up mpi-default-bin (1.15) ... 4466s Setting up libscalapack-mpich2.2:arm64 (2.2.1-3) ... 4466s Setting up nwchem-mpich (7.2.2-1build1) ... 4466s Setting up autopkgtest-satdep (0) ... 4466s Processing triggers for man-db (2.12.0-3) ... 4466s Processing triggers for libc-bin (2.39-0ubuntu6) ... 4469s (Reading database ... 77617 files and directories currently installed.) 4469s Removing autopkgtest-satdep (0) ... 4563s autopkgtest [03:19:32]: test testsuite-mpich: [----------------------- 4563s ===== TESTING NWCHEM BUILD FOR mpich ===== 4563s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 4564s 4564s 4564s Running tests/cosmo_h3co/cosmo_h3co 4564s 4564s cleaning scratch 4564s copying input and verified output files 4564s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4564s 4585s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4585s OK 4585s 4585s Running tests/dft_he2+/dft_he2+ 4585s 4585s cleaning scratch 4585s copying input and verified output files 4585s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4585s 4622s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4622s OK 4622s 4622s Running tests/qmmm_grad0/qmmm_grad0 4622s 4622s cleaning scratch 4622s copying input and verified output files 4622s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4622s 4628s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4628s OK 4628s 4628s Running tests/auh2o/auh2o 4628s 4628s cleaning scratch 4628s copying input and verified output files 4628s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4628s 4632s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4632s OK 4632s 4632s Running tests/autosym/autosym 4632s 4632s cleaning scratch 4632s copying input and verified output files 4632s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4632s 4663s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4663s OK 4663s 4663s Running tests/h2mp2/h2mp2 4663s 4663s cleaning scratch 4663s copying input and verified output files 4663s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4663s 4669s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4669s OK 4669s 4669s Running tests/h2o/h2o 4669s 4669s cleaning scratch 4669s copying input and verified output files 4669s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4669s 4671s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4671s OK 4671s 4671s Running tests/hess_h2o/hess_h2o 4671s 4671s cleaning scratch 4671s copying input and verified output files 4671s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4671s 4686s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4686s OK 4686s 4686s Running tests/prop_h2o/prop_h2o 4686s 4686s cleaning scratch 4686s copying input and verified output files 4686s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4686s 4694s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4694s OK 4694s 4694s Running tests/geom_zmatrix/geom_zmatrix 4694s 4694s cleaning scratch 4694s copying input and verified output files 4694s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4694s 4700s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4700s OK 4700s 4700s Running tests/rimp2_ne/rimp2_ne 4700s 4700s cleaning scratch 4700s copying input and verified output files 4700s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4700s 4705s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4705s OK 4705s 4705s Running tests/small_intchk/small_intchk 4705s 4705s cleaning scratch 4705s copying input and verified output files 4705s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4705s 4715s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4715s OK 4715s 4715s Running tests/tagcheck/tagcheck 4715s 4715s cleaning scratch 4715s copying input and verified output files 4715s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4715s 4719s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4719s OK 4719s 4719s Running tests/testtab/testtab 4719s 4719s cleaning scratch 4719s copying input and verified output files 4719s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4719s 4721s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4721s OK 4721s 4721s Running tests/h2o_dk/h2o_dk 4721s 4721s cleaning scratch 4721s copying input and verified output files 4721s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4721s 4732s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4732s OK 4732s 4732s Running tests/cosmo_h2o/cosmo_h2o 4732s 4732s cleaning scratch 4732s copying input and verified output files 4732s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4732s 4735s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4735s OK 4735s 4735s Running tests/ch5n_nbo/ch5n_nbo 4735s 4735s cleaning scratch 4735s copying input and verified output files 4735s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4735s 4736s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4736s OK 4736s 4736s Running tests/h2s_finite/h2s_finite 4736s 4736s cleaning scratch 4736s copying input and verified output files 4736s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4736s 4743s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4743s OK 4743s 4743s Running tests/pyqa3/pyqa3 4743s 4743s cleaning scratch 4743s copying input and verified output files 4743s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4743s 4751s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4751s OK 4751s 4751s Running tests/startag/startag 4751s 4751s cleaning scratch 4751s copying input and verified output files 4751s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4751s 4754s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4754s OK 4754s 4754s Running tests/esp/esp 4754s 4754s cleaning scratch 4754s copying input and verified output files 4754s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4754s 4757s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4757s ESP charges match 4757s 4757s 4757s Running tests/esp_uhf/esp_uhf 4757s 4757s cleaning scratch 4757s copying input and verified output files 4757s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4757s 4763s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4763s ESP charges match 4763s 4763s 4763s Running tests/dft_bsse/dft_bsse 4763s 4763s cleaning scratch 4763s copying input and verified output files 4763s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4763s 4769s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4769s OK 4769s 4769s Running tests/dplot_dft/dplot_dft 4769s 4769s cleaning scratch 4769s copying input and verified output files 4769s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4769s 4771s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4771s OK 4771s 4771s Running tests/dft_meta/dft_meta 4771s 4771s cleaning scratch 4771s copying input and verified output files 4771s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4771s 4831s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4831s OK 4831s 4831s Running tests/dft_mpwb1khf/dft_mpwb1khf 4831s 4831s cleaning scratch 4831s copying input and verified output files 4831s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4831s 4839s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4839s OK 4839s 4839s Running tests/prop_uhf_h2o/prop_uhf_h2o 4839s 4839s cleaning scratch 4839s copying input and verified output files 4839s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4839s 4904s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4904s OK 4904s 4904s Running tests/et_zn_dimer/et_zn_dimer 4904s 4904s cleaning scratch 4904s copying input and verified output files 4904s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4904s 4943s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4943s OK 4943s 4943s Running tests/vectors_rotate/vectors_rotate 4943s 4943s cleaning scratch 4943s copying input and verified output files 4943s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4943s 4948s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4948s OK 4948s 4948s Running tests/sad_ch3hf/sad_ch3hf 4948s 4948s cleaning scratch 4948s copying input and verified output files 4948s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4948s 4986s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4986s OK 4986s 4986s Running tests/band/band 4986s 4986s cleaning scratch 4986s copying input and verified output files 4986s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4986s 4994s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 4994s OK 4994s 4994s Running tests/pspw/pspw 4994s 4994s cleaning scratch 4994s copying input and verified output files 4994s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 4994s 5010s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5010s OK 5010s 5010s Running tests/pspw_md/pspw_md 5010s 5010s cleaning scratch 5010s copying input and verified output files 5010s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5010s 5029s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5029s OK 5029s 5029s Running tests/pspw_stress/pspw_stress 5029s 5029s cleaning scratch 5029s copying input and verified output files 5029s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5029s 5049s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5049s OK 5049s 5049s Running tests/mcscf_ch2/mcscf_ch2 5049s 5049s cleaning scratch 5049s copying input and verified output files 5049s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5049s 5120s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5120s OK 5120s 5120s Running tests/dft_li2freq/dft_li2freq 5120s 5120s cleaning scratch 5120s copying input and verified output files 5120s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5120s 5185s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5185s OK 5185s 5185s Running tests/n2_ccsd/n2_ccsd 5185s 5185s cleaning scratch 5185s copying input and verified output files 5185s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5185s 5256s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5256s OK 5256s 5256s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 5256s 5256s cleaning scratch 5256s copying input and verified output files 5256s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5256s 5261s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5261s OK 5261s 5261s Running tests/tddft_h2o/tddft_h2o 5261s 5261s cleaning scratch 5261s copying input and verified output files 5261s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5261s 5308s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 5308s OK 5308s 5308s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 5308s 5308s cleaning scratch 5308s copying input and verified output files 5308s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 5308s 6009s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 6009s OK 6009s 6009s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 6009s 6009s cleaning scratch 6009s copying input and verified output files 6009s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 6009s 6029s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 6029s OK 6029s 6029s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 6029s 6029s cleaning scratch 6029s copying input and verified output files 6029s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 6029s 6034s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 6034s OK 6034s 6034s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 6034s 6034s cleaning scratch 6034s copying input and verified output files 6034s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 6034s 6159s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 6159s OK 6159s 6159s Running tests/mp2_scs_n2/mp2_scs_n2 6159s 6159s cleaning scratch 6159s copying input and verified output files 6159s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 6159s 6183s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 6183s OK 6183s 6183s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 6183s 6183s cleaning scratch 6183s copying input and verified output files 6183s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 6183s 6232s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 6232s OK 6232s 6232s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 6232s 6232s cleaning scratch 6232s copying input and verified output files 6232s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 6232s 6246s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 6246s OK 6246s 6246s Running tests/water/water_md 6246s 6246s cleaning scratch 6246s copying input and verified output files 6246s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 6246s 6246s verifying nwout ...... skipped 6246s verifying test ....... completed 6246s 6246s Running tests/water/water_pme 6246s 6246s cleaning scratch 6246s copying input and verified output files 6246s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 6246s 6246s verifying nwout ...... skipped 6246s verifying test ....... completed 6246s 6246s OK 6247s autopkgtest [03:47:36]: test testsuite-mpich: -----------------------] 6247s autopkgtest [03:47:36]: test testsuite-mpich: - - - - - - - - - - results - - - - - - - - - - 6247s testsuite-mpich PASS 6249s autopkgtest [03:47:38]: @@@@@@@@@@@@@@@@@@@@ summary 6249s testsuite.sh PASS 6249s testsuite-openmpi PASS 6249s testsuite-mpich PASS 6330s Creating nova instance adt-noble-arm64-nwchem-20240324-020329-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240323.img (UUID 5063c5cd-2683-4ea1-9e65-62351adfb1a7)... 6330s Creating nova instance adt-noble-arm64-nwchem-20240324-020329-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240323.img (UUID 5063c5cd-2683-4ea1-9e65-62351adfb1a7)... 6330s Creating nova instance adt-noble-arm64-nwchem-20240324-020329-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240323.img (UUID 5063c5cd-2683-4ea1-9e65-62351adfb1a7)...