0s autopkgtest [13:54:36]: starting date: 2024-03-08 0s autopkgtest [13:54:36]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [13:54:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rjuk8ywz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:gnutls28,src:cmake,src:iddawc,src:nettle,src:rhonabwy,src:srt --apt-upgrade ncbi-tools6 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=gnutls28/3.8.3-1.1ubuntu2 cmake/3.28.3-1build2 iddawc/1.1.9+ds-1.1 nettle/3.9.1-2.2 rhonabwy/1.1.13-2.1 srt/1.5.3-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-3.secgroup --name adt-noble-arm64-ncbi-tools6-20240308-135435-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 99s autopkgtest [13:56:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 100s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [3976 B] 100s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [35.7 kB] 100s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2579 kB] 101s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [429 kB] 101s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [573 kB] 101s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 101s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 101s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 101s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [2794 kB] 101s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 101s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [38.2 kB] 101s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 103s Fetched 6601 kB in 2s (3377 kB/s) 103s Reading package lists... 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 108s The following packages will be REMOVED: 108s libhogweed6 libnettle8 108s The following NEW packages will be installed: 108s libhogweed6t64 libnettle8t64 108s The following packages will be upgraded: 108s initramfs-tools initramfs-tools-bin initramfs-tools-core libgnutls30 108s libproc2-0 pci.ids procps shim-signed 108s 8 upgraded, 2 newly installed, 2 to remove and 0 not upgraded. 108s Need to get 3006 kB of archives. 108s After this operation, 181 kB of additional disk space will be used. 108s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnettle8t64 arm64 3.9.1-2.2 [192 kB] 109s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libhogweed6t64 arm64 3.9.1-2.2 [199 kB] 109s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgnutls30 arm64 3.8.3-1ubuntu2 [942 kB] 109s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-4ubuntu1 [58.4 kB] 109s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-4ubuntu1 [708 kB] 109s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 pci.ids all 0.0~2024.02.02-1 [273 kB] 109s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 initramfs-tools all 0.142ubuntu20 [9054 B] 109s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 initramfs-tools-core all 0.142ubuntu20 [49.7 kB] 109s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 initramfs-tools-bin arm64 0.142ubuntu20 [20.2 kB] 109s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 shim-signed arm64 1.57+15.8-0ubuntu1 [555 kB] 110s Preconfiguring packages ... 110s Fetched 3006 kB in 1s (2072 kB/s) 110s dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: 110s librtmp1:arm64 depends on libhogweed6. 110s libjcat1:arm64 depends on libhogweed6. 110s libgnutls30:arm64 depends on libhogweed6 (>= 3.6). 110s 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74662 files and directories currently installed.) 111s Removing libhogweed6:arm64 (3.9.1-2) ... 111s dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: 111s librtmp1:arm64 depends on libnettle8. 111s libgnutls30:arm64 depends on libnettle8 (>= 3.9~). 111s libcurl3-gnutls:arm64 depends on libnettle8. 111s libarchive13:arm64 depends on libnettle8. 111s 111s Removing libnettle8:arm64 (3.9.1-2) ... 111s Selecting previously unselected package libnettle8t64:arm64. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74650 files and directories currently installed.) 111s Preparing to unpack .../libnettle8t64_3.9.1-2.2_arm64.deb ... 111s Unpacking libnettle8t64:arm64 (3.9.1-2.2) ... 111s Setting up libnettle8t64:arm64 (3.9.1-2.2) ... 111s Selecting previously unselected package libhogweed6t64:arm64. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74658 files and directories currently installed.) 111s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_arm64.deb ... 111s Unpacking libhogweed6t64:arm64 (3.9.1-2.2) ... 111s Setting up libhogweed6t64:arm64 (3.9.1-2.2) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74664 files and directories currently installed.) 111s Preparing to unpack .../libgnutls30_3.8.3-1ubuntu2_arm64.deb ... 111s Unpacking libgnutls30:arm64 (3.8.3-1ubuntu2) over (3.8.3-1ubuntu1) ... 111s Setting up libgnutls30:arm64 (3.8.3-1ubuntu2) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74664 files and directories currently installed.) 111s Preparing to unpack .../0-libproc2-0_2%3a4.0.4-4ubuntu1_arm64.deb ... 111s Unpacking libproc2-0:arm64 (2:4.0.4-4ubuntu1) over (2:4.0.4-2ubuntu1) ... 111s Preparing to unpack .../1-procps_2%3a4.0.4-4ubuntu1_arm64.deb ... 111s Unpacking procps (2:4.0.4-4ubuntu1) over (2:4.0.4-2ubuntu1) ... 112s Preparing to unpack .../2-pci.ids_0.0~2024.02.02-1_all.deb ... 112s Unpacking pci.ids (0.0~2024.02.02-1) over (0.0~2023.11.11-1) ... 112s Preparing to unpack .../3-initramfs-tools_0.142ubuntu20_all.deb ... 112s Unpacking initramfs-tools (0.142ubuntu20) over (0.142ubuntu19) ... 112s Preparing to unpack .../4-initramfs-tools-core_0.142ubuntu20_all.deb ... 112s Unpacking initramfs-tools-core (0.142ubuntu20) over (0.142ubuntu19) ... 112s Preparing to unpack .../5-initramfs-tools-bin_0.142ubuntu20_arm64.deb ... 112s Unpacking initramfs-tools-bin (0.142ubuntu20) over (0.142ubuntu19) ... 112s Preparing to unpack .../6-shim-signed_1.57+15.8-0ubuntu1_arm64.deb ... 112s Unpacking shim-signed (1.57+15.8-0ubuntu1) over (1.56+15.7-0ubuntu1) ... 112s Setting up pci.ids (0.0~2024.02.02-1) ... 112s Setting up shim-signed (1.57+15.8-0ubuntu1) ... 113s Unknown device "/dev/disk/by-id/*": No such device 113s Installing grub to /boot/efi. 113s Installing for arm64-efi platform. 114s Installation finished. No error reported. 114s Setting up libproc2-0:arm64 (2:4.0.4-4ubuntu1) ... 114s Setting up procps (2:4.0.4-4ubuntu1) ... 114s Setting up initramfs-tools-bin (0.142ubuntu20) ... 114s Setting up initramfs-tools-core (0.142ubuntu20) ... 114s Setting up initramfs-tools (0.142ubuntu20) ... 114s update-initramfs: deferring update (trigger activated) 114s Processing triggers for man-db (2.12.0-3) ... 116s Processing triggers for libc-bin (2.39-0ubuntu2) ... 116s Processing triggers for initramfs-tools (0.142ubuntu20) ... 116s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 116s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 144s System running in EFI mode, skipping. 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s sh: Attempting to set up Debian/Ubuntu apt sources automatically 146s sh: Distribution appears to be Ubuntu 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s eatmydata is already the newest version (131-1). 148s dbus is already the newest version (1.14.10-4ubuntu1). 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s rng-tools-debian is already the newest version (2.4). 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s haveged is already the newest version (1.9.14-1ubuntu1). 150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 151s The following packages will be REMOVED: 151s cloud-init* python3-configobj* python3-debconf* 151s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 151s After this operation, 3248 kB disk space will be freed. 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74664 files and directories currently installed.) 151s Removing cloud-init (24.1-0ubuntu1) ... 152s Removing python3-configobj (5.0.8-3) ... 152s Removing python3-debconf (1.5.86) ... 152s Processing triggers for man-db (2.12.0-3) ... 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74275 files and directories currently installed.) 152s Purging configuration files for cloud-init (24.1-0ubuntu1) ... 153s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 153s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 155s linux-generic is already the newest version (6.8.0-11.11+1). 155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 155s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 156s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 156s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 157s Reading package lists... 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Calculating upgrade... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 161s autopkgtest [13:57:17]: rebooting testbed after setup commands that affected boot 192s autopkgtest [13:57:48]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 193s autopkgtest [13:57:49]: testbed dpkg architecture: arm64 194s autopkgtest [13:57:50]: @@@@@@@@@@@@@@@@@@@@ apt-source ncbi-tools6 203s Get:1 http://ftpmaster.internal/ubuntu noble/universe ncbi-tools6 6.1.20170106+dfsg1-10 (dsc) [2892 B] 203s Get:2 http://ftpmaster.internal/ubuntu noble/universe ncbi-tools6 6.1.20170106+dfsg1-10 (tar) [58.3 MB] 203s Get:3 http://ftpmaster.internal/ubuntu noble/universe ncbi-tools6 6.1.20170106+dfsg1-10 (diff) [1513 kB] 204s gpgv: Signature made Fri Sep 2 20:37:56 2022 UTC 204s gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 204s gpgv: Can't check signature: No public key 204s dpkg-source: warning: cannot verify inline signature for ./ncbi-tools6_6.1.20170106+dfsg1-10.dsc: no acceptable signature found 211s autopkgtest [13:58:07]: testing package ncbi-tools6 version 6.1.20170106+dfsg1-10 211s autopkgtest [13:58:07]: build not needed 228s autopkgtest [13:58:24]: test run-unit-test: preparing testbed 231s Reading package lists... 232s Building dependency tree... 232s Reading state information... 232s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 232s Starting 2 pkgProblemResolver with broken count: 0 232s Done 232s Done 232s Starting pkgProblemResolver with broken count: 0 233s Starting 2 pkgProblemResolver with broken count: 0 233s Done 233s The following additional packages will be installed: 233s fontconfig-config fonts-dejavu-core fonts-dejavu-mono libbrotli-dev 233s libbz2-dev libc-dev-bin libc6-dev libcrypt-dev libdrm-amdgpu1 233s libdrm-nouveau2 libdrm-radeon1 libexpat1-dev libfontconfig-dev 233s libfontconfig1 libfontconfig1-dev libfreetype-dev libgl-dev libgl1 233s libgl1-mesa-dri libglapi-mesa libglu1-mesa libglu1-mesa-dev libglvnd0 233s libglx-dev libglx-mesa0 libglx0 libice-dev libice6 libjpeg-turbo8 libjpeg8 233s libllvm17 libmotif-common libmotif-dev libmrm4 libncbi6 libncbi6-dev 233s libnsl-dev libopengl-dev libopengl0 libpkgconf3 libpng-dev 233s libpthread-stubs0-dev libsensors-config libsensors5 libsm-dev libsm6 233s libtirpc-dev libuil4 libvibrant6-dev libvibrant6b libvulkan1 libx11-dev 233s libx11-xcb1 libxau-dev libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 233s libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 233s libxcb1-dev libxdmcp-dev libxext-dev libxfixes3 libxft-dev libxft2 libxm4 233s libxmu-dev libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence1 233s libxt-dev libxt6 libxxf86vm1 linux-libc-dev ncbi-cn3d ncbi-data 233s ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 pkgconf pkgconf-bin 233s rpcsvc-proto uil uuid-dev x11-common x11proto-dev xorg-sgml-doctools 233s xtrans-dev zlib1g-dev 233s Suggested packages: 233s glibc-doc manpages-dev freetype2-doc libice-doc lm-sensors libsm-doc 233s libx11-doc libxcb-doc libxext-doc libxt-doc ncbi-blast+ 233s Recommended packages: 233s bzip2-doc manpages manpages-dev libc-devtools libgl1-amber-dri libpng-tools 233s mesa-vulkan-drivers | vulkan-icd ncbi-blast+ 233s The following NEW packages will be installed: 233s fontconfig-config fonts-dejavu-core fonts-dejavu-mono libbrotli-dev 233s libbz2-dev libc-dev-bin libc6-dev libcrypt-dev libdrm-amdgpu1 233s libdrm-nouveau2 libdrm-radeon1 libexpat1-dev libfontconfig-dev 233s libfontconfig1 libfontconfig1-dev libfreetype-dev libgl-dev libgl1 233s libgl1-mesa-dri libglapi-mesa libglu1-mesa libglu1-mesa-dev libglvnd0 233s libglx-dev libglx-mesa0 libglx0 libice-dev libice6 libjpeg-turbo8 libjpeg8 233s libllvm17 libmotif-common libmotif-dev libmrm4 libncbi6 libncbi6-dev 233s libnsl-dev libopengl-dev libopengl0 libpkgconf3 libpng-dev 233s libpthread-stubs0-dev libsensors-config libsensors5 libsm-dev libsm6 233s libtirpc-dev libuil4 libvibrant6-dev libvibrant6b libvulkan1 libx11-dev 233s libx11-xcb1 libxau-dev libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 233s libxcb-present0 libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 233s libxcb1-dev libxdmcp-dev libxext-dev libxfixes3 libxft-dev libxft2 libxm4 233s libxmu-dev libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence1 233s libxt-dev libxt6 libxxf86vm1 linux-libc-dev ncbi-cn3d ncbi-data 233s ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 pkgconf pkgconf-bin 233s rpcsvc-proto uil uuid-dev x11-common x11proto-dev xorg-sgml-doctools 233s xtrans-dev zlib1g-dev 233s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 233s 1 not fully installed or removed. 233s Need to get 116 MB of archives. 233s After this operation, 659 MB of additional disk space will be used. 233s Get:1 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] 234s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi6 arm64 6.1.20170106+dfsg1-10 [4291 kB] 234s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi6-dev arm64 6.1.20170106+dfsg1-10 [6053 kB] 234s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-rrna-data all 6.1.20170106+dfsg1-10 [46.3 MB] 236s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-tools-bin arm64 6.1.20170106+dfsg1-10 [1885 kB] 236s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 236s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 236s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 236s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 236s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 236s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 236s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 236s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 236s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 236s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 236s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 236s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 236s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 236s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 236s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 236s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 236s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 236s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 236s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 237s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libsensors-config all 1:3.6.0-9 [5458 B] 237s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libsensors5 arm64 1:3.6.0-9 [26.9 kB] 237s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 237s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 237s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 237s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 237s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 237s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libglu1-mesa arm64 9.0.2-1.1 [137 kB] 237s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 237s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libmotif-common all 2.3.8-3 [11.0 kB] 237s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 237s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 237s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 237s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 237s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 237s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 237s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 237s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 237s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 237s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 237s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 237s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 237s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 libxm4 arm64 2.3.8-3 [897 kB] 237s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 libvibrant6b arm64 6.1.20170106+dfsg1-10 [1320 kB] 237s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-cn3d arm64 3.0.20170106+dfsg1-10 [9998 B] 237s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-tools-x11 arm64 6.1.20170106+dfsg1-10 [1021 kB] 237s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] 237s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 x11proto-dev all 2023.2-1 [602 kB] 237s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxau-dev arm64 1:1.0.9-1build5 [10.1 kB] 237s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxdmcp-dev arm64 1:1.1.3-0ubuntu5 [26.4 kB] 237s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 xtrans-dev all 1.4.0-1 [68.9 kB] 237s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libpthread-stubs0-dev arm64 0.4-1build2 [5496 B] 237s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb1-dev arm64 1.15-1 [89.6 kB] 237s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-dev arm64 2:1.8.7-1 [738 kB] 237s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-dev arm64 1.7.0-1 [14.2 kB] 237s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libgl-dev arm64 1.7.0-1 [102 kB] 237s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl-dev arm64 1.7.0-1 [3430 B] 237s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1 [222 kB] 237s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libmrm4 arm64 2.3.8-3 [54.3 kB] 237s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 libuil4 arm64 2.3.8-3 [117 kB] 237s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 237s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 238s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 238s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 238s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 238s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 238s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 238s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libexpat1-dev arm64 2.6.0-1 [128 kB] 238s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libbrotli-dev arm64 1.1.0-2 [359 kB] 238s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 238s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 238s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 238s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libfreetype-dev arm64 2.13.2+dfsg-1 [570 kB] 238s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 uuid-dev arm64 2.39.3-6ubuntu2 [34.7 kB] 238s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 238s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 238s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 238s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig-dev arm64 2.15.0-1ubuntu1 [165 kB] 238s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1-dev arm64 2.15.0-1ubuntu1 [1830 B] 238s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender-dev arm64 1:0.9.10-1.1 [26.2 kB] 238s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libxft-dev arm64 2.3.6-1 [65.1 kB] 238s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libice-dev arm64 2:1.0.10-1build2 [52.1 kB] 238s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libsm-dev arm64 2:1.2.3-1build2 [18.2 kB] 238s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libxt-dev arm64 1:1.2.1-1.1 [403 kB] 238s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 uil arm64 2.3.8-3 [7312 B] 238s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libmotif-dev arm64 2.3.8-3 [2388 kB] 238s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libxext-dev arm64 2:1.3.4-1build1 [85.5 kB] 238s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu-headers all 2:1.1.3-3 [54.1 kB] 238s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu-dev arm64 2:1.1.3-3 [55.7 kB] 238s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libvibrant6-dev arm64 6.1.20170106+dfsg1-10 [1708 kB] 239s Fetched 116 MB in 5s (24.3 MB/s) 239s Selecting previously unselected package ncbi-data. 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74220 files and directories currently installed.) 239s Preparing to unpack .../00-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... 239s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... 239s Selecting previously unselected package libncbi6:arm64. 239s Preparing to unpack .../01-libncbi6_6.1.20170106+dfsg1-10_arm64.deb ... 239s Unpacking libncbi6:arm64 (6.1.20170106+dfsg1-10) ... 239s Selecting previously unselected package libncbi6-dev:arm64. 239s Preparing to unpack .../02-libncbi6-dev_6.1.20170106+dfsg1-10_arm64.deb ... 239s Unpacking libncbi6-dev:arm64 (6.1.20170106+dfsg1-10) ... 240s Selecting previously unselected package ncbi-rrna-data. 240s Preparing to unpack .../03-ncbi-rrna-data_6.1.20170106+dfsg1-10_all.deb ... 240s Unpacking ncbi-rrna-data (6.1.20170106+dfsg1-10) ... 242s Selecting previously unselected package ncbi-tools-bin. 242s Preparing to unpack .../04-ncbi-tools-bin_6.1.20170106+dfsg1-10_arm64.deb ... 242s Unpacking ncbi-tools-bin (6.1.20170106+dfsg1-10) ... 242s Selecting previously unselected package libglvnd0:arm64. 242s Preparing to unpack .../05-libglvnd0_1.7.0-1_arm64.deb ... 242s Unpacking libglvnd0:arm64 (1.7.0-1) ... 242s Selecting previously unselected package libglapi-mesa:arm64. 242s Preparing to unpack .../06-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 242s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 242s Selecting previously unselected package libx11-xcb1:arm64. 242s Preparing to unpack .../07-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 242s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 242s Selecting previously unselected package libxcb-dri2-0:arm64. 242s Preparing to unpack .../08-libxcb-dri2-0_1.15-1_arm64.deb ... 242s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 242s Selecting previously unselected package libxcb-dri3-0:arm64. 242s Preparing to unpack .../09-libxcb-dri3-0_1.15-1_arm64.deb ... 242s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 242s Selecting previously unselected package libxcb-glx0:arm64. 242s Preparing to unpack .../10-libxcb-glx0_1.15-1_arm64.deb ... 242s Unpacking libxcb-glx0:arm64 (1.15-1) ... 242s Selecting previously unselected package libxcb-present0:arm64. 242s Preparing to unpack .../11-libxcb-present0_1.15-1_arm64.deb ... 242s Unpacking libxcb-present0:arm64 (1.15-1) ... 242s Selecting previously unselected package libxcb-randr0:arm64. 242s Preparing to unpack .../12-libxcb-randr0_1.15-1_arm64.deb ... 242s Unpacking libxcb-randr0:arm64 (1.15-1) ... 242s Selecting previously unselected package libxcb-shm0:arm64. 242s Preparing to unpack .../13-libxcb-shm0_1.15-1_arm64.deb ... 242s Unpacking libxcb-shm0:arm64 (1.15-1) ... 242s Selecting previously unselected package libxcb-sync1:arm64. 242s Preparing to unpack .../14-libxcb-sync1_1.15-1_arm64.deb ... 242s Unpacking libxcb-sync1:arm64 (1.15-1) ... 242s Selecting previously unselected package libxcb-xfixes0:arm64. 243s Preparing to unpack .../15-libxcb-xfixes0_1.15-1_arm64.deb ... 243s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 243s Selecting previously unselected package libxfixes3:arm64. 243s Preparing to unpack .../16-libxfixes3_1%3a6.0.0-2_arm64.deb ... 243s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 243s Selecting previously unselected package libxshmfence1:arm64. 243s Preparing to unpack .../17-libxshmfence1_1.3-1build4_arm64.deb ... 243s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 243s Selecting previously unselected package libxxf86vm1:arm64. 243s Preparing to unpack .../18-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 243s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 243s Selecting previously unselected package libvulkan1:arm64. 243s Preparing to unpack .../19-libvulkan1_1.3.275.0-1_arm64.deb ... 243s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 243s Selecting previously unselected package libdrm-amdgpu1:arm64. 243s Preparing to unpack .../20-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 243s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 243s Selecting previously unselected package libdrm-nouveau2:arm64. 243s Preparing to unpack .../21-libdrm-nouveau2_2.4.120-2_arm64.deb ... 243s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 243s Selecting previously unselected package libdrm-radeon1:arm64. 243s Preparing to unpack .../22-libdrm-radeon1_2.4.120-2_arm64.deb ... 243s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 243s Selecting previously unselected package libllvm17:arm64. 243s Preparing to unpack .../23-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 243s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 243s Selecting previously unselected package libsensors-config. 243s Preparing to unpack .../24-libsensors-config_1%3a3.6.0-9_all.deb ... 243s Unpacking libsensors-config (1:3.6.0-9) ... 243s Selecting previously unselected package libsensors5:arm64. 243s Preparing to unpack .../25-libsensors5_1%3a3.6.0-9_arm64.deb ... 243s Unpacking libsensors5:arm64 (1:3.6.0-9) ... 244s Selecting previously unselected package libgl1-mesa-dri:arm64. 244s Preparing to unpack .../26-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 244s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 244s Selecting previously unselected package libglx-mesa0:arm64. 244s Preparing to unpack .../27-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 244s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 244s Selecting previously unselected package libglx0:arm64. 244s Preparing to unpack .../28-libglx0_1.7.0-1_arm64.deb ... 244s Unpacking libglx0:arm64 (1.7.0-1) ... 244s Selecting previously unselected package libgl1:arm64. 244s Preparing to unpack .../29-libgl1_1.7.0-1_arm64.deb ... 244s Unpacking libgl1:arm64 (1.7.0-1) ... 244s Selecting previously unselected package libopengl0:arm64. 244s Preparing to unpack .../30-libopengl0_1.7.0-1_arm64.deb ... 244s Unpacking libopengl0:arm64 (1.7.0-1) ... 244s Selecting previously unselected package libglu1-mesa:arm64. 244s Preparing to unpack .../31-libglu1-mesa_9.0.2-1.1_arm64.deb ... 244s Unpacking libglu1-mesa:arm64 (9.0.2-1.1) ... 244s Selecting previously unselected package x11-common. 244s Preparing to unpack .../32-x11-common_1%3a7.7+23ubuntu2_all.deb ... 244s Unpacking x11-common (1:7.7+23ubuntu2) ... 244s Setting up x11-common (1:7.7+23ubuntu2) ... 245s Selecting previously unselected package libmotif-common. 245s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75321 files and directories currently installed.) 245s Preparing to unpack .../00-libmotif-common_2.3.8-3_all.deb ... 245s Unpacking libmotif-common (2.3.8-3) ... 245s Selecting previously unselected package fonts-dejavu-mono. 245s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 245s Unpacking fonts-dejavu-mono (2.37-8) ... 245s Selecting previously unselected package fonts-dejavu-core. 245s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 245s Unpacking fonts-dejavu-core (2.37-8) ... 245s Selecting previously unselected package fontconfig-config. 245s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 245s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 245s Selecting previously unselected package libfontconfig1:arm64. 245s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 245s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 245s Selecting previously unselected package libjpeg-turbo8:arm64. 245s Preparing to unpack .../05-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 245s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 245s Selecting previously unselected package libjpeg8:arm64. 245s Preparing to unpack .../06-libjpeg8_8c-2ubuntu11_arm64.deb ... 245s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 245s Selecting previously unselected package libxrender1:arm64. 245s Preparing to unpack .../07-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 245s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 245s Selecting previously unselected package libxft2:arm64. 245s Preparing to unpack .../08-libxft2_2.3.6-1_arm64.deb ... 245s Unpacking libxft2:arm64 (2.3.6-1) ... 245s Selecting previously unselected package libice6:arm64. 245s Preparing to unpack .../09-libice6_2%3a1.0.10-1build2_arm64.deb ... 245s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 245s Selecting previously unselected package libsm6:arm64. 245s Preparing to unpack .../10-libsm6_2%3a1.2.3-1build2_arm64.deb ... 245s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 245s Selecting previously unselected package libxt6:arm64. 245s Preparing to unpack .../11-libxt6_1%3a1.2.1-1.1_arm64.deb ... 245s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 245s Selecting previously unselected package libxmu6:arm64. 245s Preparing to unpack .../12-libxmu6_2%3a1.1.3-3_arm64.deb ... 245s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 245s Selecting previously unselected package libxm4:arm64. 245s Preparing to unpack .../13-libxm4_2.3.8-3_arm64.deb ... 245s Unpacking libxm4:arm64 (2.3.8-3) ... 246s Selecting previously unselected package libvibrant6b:arm64. 246s Preparing to unpack .../14-libvibrant6b_6.1.20170106+dfsg1-10_arm64.deb ... 246s Unpacking libvibrant6b:arm64 (6.1.20170106+dfsg1-10) ... 246s Selecting previously unselected package ncbi-cn3d. 246s Preparing to unpack .../15-ncbi-cn3d_3.0.20170106+dfsg1-10_arm64.deb ... 246s Unpacking ncbi-cn3d (3.0.20170106+dfsg1-10) ... 246s Selecting previously unselected package ncbi-tools-x11. 246s Preparing to unpack .../16-ncbi-tools-x11_6.1.20170106+dfsg1-10_arm64.deb ... 246s Unpacking ncbi-tools-x11 (6.1.20170106+dfsg1-10) ... 246s Selecting previously unselected package xorg-sgml-doctools. 246s Preparing to unpack .../17-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... 246s Unpacking xorg-sgml-doctools (1:1.11-1.1) ... 246s Selecting previously unselected package x11proto-dev. 246s Preparing to unpack .../18-x11proto-dev_2023.2-1_all.deb ... 246s Unpacking x11proto-dev (2023.2-1) ... 246s Selecting previously unselected package libxau-dev:arm64. 246s Preparing to unpack .../19-libxau-dev_1%3a1.0.9-1build5_arm64.deb ... 246s Unpacking libxau-dev:arm64 (1:1.0.9-1build5) ... 246s Selecting previously unselected package libxdmcp-dev:arm64. 246s Preparing to unpack .../20-libxdmcp-dev_1%3a1.1.3-0ubuntu5_arm64.deb ... 246s Unpacking libxdmcp-dev:arm64 (1:1.1.3-0ubuntu5) ... 246s Selecting previously unselected package xtrans-dev. 246s Preparing to unpack .../21-xtrans-dev_1.4.0-1_all.deb ... 246s Unpacking xtrans-dev (1.4.0-1) ... 246s Selecting previously unselected package libpthread-stubs0-dev:arm64. 246s Preparing to unpack .../22-libpthread-stubs0-dev_0.4-1build2_arm64.deb ... 246s Unpacking libpthread-stubs0-dev:arm64 (0.4-1build2) ... 246s Selecting previously unselected package libxcb1-dev:arm64. 246s Preparing to unpack .../23-libxcb1-dev_1.15-1_arm64.deb ... 246s Unpacking libxcb1-dev:arm64 (1.15-1) ... 246s Selecting previously unselected package libx11-dev:arm64. 246s Preparing to unpack .../24-libx11-dev_2%3a1.8.7-1_arm64.deb ... 246s Unpacking libx11-dev:arm64 (2:1.8.7-1) ... 246s Selecting previously unselected package libglx-dev:arm64. 246s Preparing to unpack .../25-libglx-dev_1.7.0-1_arm64.deb ... 246s Unpacking libglx-dev:arm64 (1.7.0-1) ... 246s Selecting previously unselected package libgl-dev:arm64. 246s Preparing to unpack .../26-libgl-dev_1.7.0-1_arm64.deb ... 246s Unpacking libgl-dev:arm64 (1.7.0-1) ... 246s Selecting previously unselected package libopengl-dev:arm64. 246s Preparing to unpack .../27-libopengl-dev_1.7.0-1_arm64.deb ... 246s Unpacking libopengl-dev:arm64 (1.7.0-1) ... 246s Selecting previously unselected package libglu1-mesa-dev:arm64. 246s Preparing to unpack .../28-libglu1-mesa-dev_9.0.2-1.1_arm64.deb ... 246s Unpacking libglu1-mesa-dev:arm64 (9.0.2-1.1) ... 246s Selecting previously unselected package libmrm4:arm64. 246s Preparing to unpack .../29-libmrm4_2.3.8-3_arm64.deb ... 246s Unpacking libmrm4:arm64 (2.3.8-3) ... 246s Selecting previously unselected package libuil4:arm64. 246s Preparing to unpack .../30-libuil4_2.3.8-3_arm64.deb ... 246s Unpacking libuil4:arm64 (2.3.8-3) ... 246s Selecting previously unselected package libc-dev-bin. 246s Preparing to unpack .../31-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 246s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 246s Selecting previously unselected package linux-libc-dev:arm64. 246s Preparing to unpack .../32-linux-libc-dev_6.8.0-11.11_arm64.deb ... 246s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 247s Selecting previously unselected package libcrypt-dev:arm64. 247s Preparing to unpack .../33-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 247s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 247s Selecting previously unselected package libtirpc-dev:arm64. 247s Preparing to unpack .../34-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 247s 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package libbz2-dev:arm64. 247s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 247s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 247s Selecting previously unselected package zlib1g-dev:arm64. 247s Preparing to unpack .../41-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 247s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 247s Selecting previously unselected package libpng-dev:arm64. 247s Preparing to unpack .../42-libpng-dev_1.6.43-1_arm64.deb ... 247s Unpacking libpng-dev:arm64 (1.6.43-1) ... 247s Selecting previously unselected package libfreetype-dev:arm64. 247s Preparing to unpack .../43-libfreetype-dev_2.13.2+dfsg-1_arm64.deb ... 247s Unpacking libfreetype-dev:arm64 (2.13.2+dfsg-1) ... 247s Selecting previously unselected package uuid-dev:arm64. 247s Preparing to unpack .../44-uuid-dev_2.39.3-6ubuntu2_arm64.deb ... 247s Unpacking uuid-dev:arm64 (2.39.3-6ubuntu2) ... 247s Selecting previously unselected package libpkgconf3:arm64. 247s Preparing to unpack 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248s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 248s Setting up libxft2:arm64 (2.3.6-1) ... 248s Setting up libxmu6:arm64 (2:1.1.3-3) ... 248s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 248s Setting up libxcb1-dev:arm64 (1.15-1) ... 248s Setting up libglx0:arm64 (1.7.0-1) ... 248s Setting up libx11-dev:arm64 (2:1.8.7-1) ... 248s Setting up libgl1:arm64 (1.7.0-1) ... 248s Setting up libexpat1-dev:arm64 (2.6.0-1) ... 248s Setting up libxt-dev:arm64 (1:1.2.1-1.1) ... 248s Setting up uuid-dev:arm64 (2.39.3-6ubuntu2) ... 248s Setting up libxext-dev:arm64 (2:1.3.4-1build1) ... 248s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 248s Setting up libglx-dev:arm64 (1.7.0-1) ... 248s Setting up libxrender-dev:arm64 (1:0.9.10-1.1) ... 248s Setting up libgl-dev:arm64 (1.7.0-1) ... 248s Setting up libxm4:arm64 (2.3.8-3) ... 248s Setting up libxmu-headers (2:1.1.3-3) ... 248s Setting up libpng-dev:arm64 (1.6.43-1) ... 248s Setting up libvibrant6b:arm64 (6.1.20170106+dfsg1-10) ... 248s Setting up libxmu-dev:arm64 (2:1.1.3-3) ... 248s Setting up libfreetype-dev:arm64 (2.13.2+dfsg-1) ... 248s Setting up libmrm4:arm64 (2.3.8-3) ... 248s Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1) ... 248s Setting up libuil4:arm64 (2.3.8-3) ... 248s Setting up uil (2.3.8-3) ... 248s Setting up ncbi-cn3d (3.0.20170106+dfsg1-10) ... 248s update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode 248s Setting up libfontconfig-dev:arm64 (2.15.0-1ubuntu1) ... 248s Setting up ncbi-tools-x11 (6.1.20170106+dfsg1-10) ... 248s Setting up libxft-dev:arm64 (2.3.6-1) ... 248s Setting up libfontconfig1-dev:arm64 (2.15.0-1ubuntu1) ... 248s Setting up libmotif-dev:arm64 (2.3.8-3) ... 248s Setting up libvibrant6-dev:arm64 (6.1.20170106+dfsg1-10) ... 248s Setting up autopkgtest-satdep (0) ... 248s Processing triggers for man-db (2.12.0-3) ... 249s Processing triggers for libc-bin (2.39-0ubuntu2) ... 257s (Reading database ... 79531 files and directories currently installed.) 257s Removing autopkgtest-satdep (0) ... 258s autopkgtest [13:58:54]: test run-unit-test: [----------------------- 259s ---asn2asn test--- 259s ---asn2all test--- 260s ---asn2fsa test--- 260s ---asn2gb test--- 261s ---asn2idx test--- 261s ---asn2xml test--- 262s ---cleanasn test--- 262s ---gene2xml test--- 263s ---vecscreen test--- 266s ---asndisc test--- 269s ---asnval test--- 271s ---asnmacro test--- 274s ---asntool test--- 274s ---indexpub test--- 274s ---getpub test--- 274s ---getmesh test--- 274s ---debruijn test--- 274s ---gil2bin test--- 274s ---makeset test--- 274s ---nps2gps test--- 274s [nps2gps] Processing X66994.1 (idfetch_g1234.npset) 274s ---tbl2asn test--- 274s ---checksub test--- 274s ---fa2htgs test--- 274s ---subfuse test--- 274s [subfuse] Processing checksub 274s 274s [subfuse] Processing Sc_16 274s 274s ---trna2sap test--- 274s ---trna2tbl test--- 274s ---spidey test--- 274s autopkgtest [13:59:10]: test run-unit-test: -----------------------] 275s run-unit-test PASS 275s autopkgtest [13:59:11]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 275s autopkgtest [13:59:11]: @@@@@@@@@@@@@@@@@@@@ summary 275s run-unit-test PASS 280s Creating nova instance adt-noble-arm64-ncbi-tools6-20240308-135435-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240307.img (UUID 00fdfee3-5cf8-4806-8086-451645753def)...