0s autopkgtest [03:13:33]: starting date: 2024-03-11 0s autopkgtest [03:13:33]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [03:13:33]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.omgq73is/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:perl,src:db5.3,src:gdbm,src:mmdebstrap --apt-upgrade nanopolish --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=perl/5.38.2-3.2 db5.3/5.3.28+dfsg2-5 gdbm/1.23-5.1 mmdebstrap/1.4.3-6' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-11.secgroup --name adt-noble-arm64-nanopolish-20240311-031333-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 94s autopkgtest [03:15:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 95s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 95s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [3976 B] 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [433 kB] 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2615 kB] 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [37.3 kB] 95s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [582 kB] 95s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 95s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 95s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 95s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [2966 kB] 95s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 95s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [39.6 kB] 95s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 97s Fetched 6826 kB in 1s (4697 kB/s) 97s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Calculating upgrade... 101s The following packages were automatically installed and are no longer required: 101s libgdbm-compat4t64 libperl5.38 lto-disabled-list make perl-modules-5.38 101s Use 'sudo apt autoremove' to remove them. 101s The following packages will be REMOVED: 101s dpkg-dev libdpkg-perl libgdbm-compat4 libgdbm6 perl 101s The following NEW packages will be installed: 101s libgdbm-compat4t64 libgdbm6t64 101s The following packages have been kept back: 101s libperl5.38 101s The following packages will be upgraded: 101s perl-base perl-modules-5.38 101s 2 upgraded, 2 newly installed, 5 to remove and 1 not upgraded. 101s Need to get 4928 kB of archives. 101s After this operation, 4158 kB disk space will be freed. 101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-base arm64 5.38.2-3.2 [1777 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm6t64 arm64 1.23-5.1 [34.3 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm-compat4t64 arm64 1.23-5.1 [6576 B] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 102s Fetched 4928 kB in 1s (5897 kB/s) 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74748 files and directories currently installed.) 103s Removing dpkg-dev (1.22.4ubuntu5) ... 103s Removing libdpkg-perl (1.22.4ubuntu5) ... 103s Removing perl (5.38.2-3) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74167 files and directories currently installed.) 103s Preparing to unpack .../perl-base_5.38.2-3.2_arm64.deb ... 103s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 103s Setting up perl-base (5.38.2-3.2) ... 103s dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested: 103s python3-gdbm:arm64 depends on libgdbm6 (>= 1.16). 103s man-db depends on libgdbm6 (>= 1.16). 103s libperl5.38:arm64 depends on libgdbm6 (>= 1.21). 103s libgdbm-compat4:arm64 depends on libgdbm6 (>= 1.16). 103s 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74167 files and directories currently installed.) 103s Removing libgdbm6:arm64 (1.23-5) ... 103s Selecting previously unselected package libgdbm6t64:arm64. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74162 files and directories currently installed.) 103s Preparing to unpack .../libgdbm6t64_1.23-5.1_arm64.deb ... 103s Unpacking libgdbm6t64:arm64 (1.23-5.1) ... 103s dpkg: libgdbm-compat4:arm64: dependency problems, but removing anyway as you requested: 103s libperl5.38:arm64 depends on libgdbm-compat4 (>= 1.18-3). 103s 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74168 files and directories currently installed.) 104s Removing libgdbm-compat4:arm64 (1.23-5) ... 104s Selecting previously unselected package libgdbm-compat4t64:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74163 files and directories currently installed.) 104s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_arm64.deb ... 104s Unpacking libgdbm-compat4t64:arm64 (1.23-5.1) ... 104s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 104s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 104s Setting up libgdbm6t64:arm64 (1.23-5.1) ... 104s Setting up libgdbm-compat4t64:arm64 (1.23-5.1) ... 104s Setting up perl-modules-5.38 (5.38.2-3.2) ... 104s Processing triggers for man-db (2.12.0-3) ... 105s Processing triggers for libc-bin (2.39-0ubuntu2) ... 105s Reading package lists... 105s Building dependency tree... 106s Reading state information... 106s The following packages will be REMOVED: 106s libgdbm-compat4t64* libperl5.38* lto-disabled-list* make* perl-modules-5.38* 106s 0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded. 106s After this operation, 52.0 MB disk space will be freed. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74169 files and directories currently installed.) 106s Removing libperl5.38:arm64 (5.38.2-3) ... 106s Removing libgdbm-compat4t64:arm64 (1.23-5.1) ... 106s Removing lto-disabled-list (47) ... 106s Removing make (4.3-4.1build1) ... 106s Removing perl-modules-5.38 (5.38.2-3.2) ... 106s Processing triggers for man-db (2.12.0-3) ... 107s Processing triggers for libc-bin (2.39-0ubuntu2) ... 108s sh: Attempting to set up Debian/Ubuntu apt sources automatically 108s sh: Distribution appears to be Ubuntu 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s eatmydata is already the newest version (131-1). 109s dbus is already the newest version (1.14.10-4ubuntu1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s rng-tools-debian is already the newest version (2.4). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s haveged is already the newest version (1.9.14-1ubuntu1). 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s The following additional packages will be installed: 112s libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 lto-disabled-list 112s make perl perl-modules-5.38 112s Suggested packages: 112s debian-keyring gcc | c-compiler git bzr make-doc perl-doc 112s libterm-readline-gnu-perl | libterm-readline-perl-perl 112s libtap-harness-archive-perl 112s Recommended packages: 112s build-essential gcc | c-compiler fakeroot libalgorithm-merge-perl 112s libfile-fcntllock-perl 112s The following packages will be REMOVED: 112s libdb5.3 112s The following NEW packages will be installed: 112s dpkg-dev libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 112s lto-disabled-list make perl perl-modules-5.38 112s 0 upgraded, 9 newly installed, 1 to remove and 0 not upgraded. 112s Need to get 7257 kB/10.4 MB of archives. 112s After this operation, 56.1 MB of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-5 [719 kB] 113s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libperl5.38t64 arm64 5.38.2-3.2 [4771 kB] 113s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl arm64 5.38.2-3.2 [231 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.4ubuntu5 [268 kB] 113s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 make arm64 4.3-4.1build1 [177 kB] 113s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 47 [12.4 kB] 113s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.4ubuntu5 [1078 kB] 113s Fetched 7257 kB in 1s (8355 kB/s) 113s dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: 113s libsasl2-modules-db:arm64 depends on libdb5.3. 113s libpython3.12-stdlib:arm64 depends on libdb5.3. 113s libpam-modules:arm64 depends on libdb5.3. 113s iproute2 depends on libdb5.3. 113s apt-utils depends on libdb5.3. 113s 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72198 files and directories currently installed.) 113s Removing libdb5.3:arm64 (5.3.28+dfsg2-4) ... 114s Selecting previously unselected package libdb5.3t64:arm64. 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72192 files and directories currently installed.) 114s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5_arm64.deb ... 114s Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-5) ... 114s Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-5) ... 114s Selecting previously unselected package perl-modules-5.38. 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72198 files and directories currently installed.) 114s Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ... 114s Unpacking perl-modules-5.38 (5.38.2-3.2) ... 114s Selecting previously unselected package libgdbm-compat4t64:arm64. 114s Preparing to unpack .../1-libgdbm-compat4t64_1.23-5.1_arm64.deb ... 114s Unpacking libgdbm-compat4t64:arm64 (1.23-5.1) ... 114s Selecting previously unselected package libperl5.38t64:arm64. 114s Preparing to unpack .../2-libperl5.38t64_5.38.2-3.2_arm64.deb ... 114s Unpacking libperl5.38t64:arm64 (5.38.2-3.2) ... 114s Selecting previously unselected package perl. 114s Preparing to unpack .../3-perl_5.38.2-3.2_arm64.deb ... 114s Unpacking perl (5.38.2-3.2) ... 114s Selecting previously unselected package libdpkg-perl. 115s Preparing to unpack .../4-libdpkg-perl_1.22.4ubuntu5_all.deb ... 115s Unpacking libdpkg-perl (1.22.4ubuntu5) ... 115s Selecting previously unselected package make. 115s Preparing to unpack .../5-make_4.3-4.1build1_arm64.deb ... 115s Unpacking make (4.3-4.1build1) ... 115s Selecting previously unselected package lto-disabled-list. 115s Preparing to unpack .../6-lto-disabled-list_47_all.deb ... 115s Unpacking lto-disabled-list (47) ... 115s Selecting previously unselected package dpkg-dev. 115s Preparing to unpack .../7-dpkg-dev_1.22.4ubuntu5_all.deb ... 115s Unpacking dpkg-dev (1.22.4ubuntu5) ... 115s Setting up lto-disabled-list (47) ... 115s Setting up libgdbm-compat4t64:arm64 (1.23-5.1) ... 115s Setting up make (4.3-4.1build1) ... 115s Setting up perl-modules-5.38 (5.38.2-3.2) ... 115s Setting up libperl5.38t64:arm64 (5.38.2-3.2) ... 115s Setting up perl (5.38.2-3.2) ... 115s Setting up libdpkg-perl (1.22.4ubuntu5) ... 115s Setting up dpkg-dev (1.22.4ubuntu5) ... 115s Processing triggers for man-db (2.12.0-3) ... 116s Processing triggers for libc-bin (2.39-0ubuntu2) ... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s The following packages will be REMOVED: 117s cloud-init* python3-configobj* python3-debconf* 117s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 117s After this operation, 3248 kB disk space will be freed. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74750 files and directories currently installed.) 117s Removing cloud-init (24.1-0ubuntu1) ... 117s Removing python3-configobj (5.0.8-3) ... 118s Removing python3-debconf (1.5.86) ... 118s Processing triggers for man-db (2.12.0-3) ... 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74361 files and directories currently installed.) 118s Purging configuration files for cloud-init (24.1-0ubuntu1) ... 118s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 118s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s linux-generic is already the newest version (6.8.0-11.11+1). 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 120s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 120s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 120s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 121s Reading package lists... 121s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s autopkgtest [03:15:37]: rebooting testbed after setup commands that affected boot 147s autopkgtest [03:16:00]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 147s autopkgtest [03:16:00]: testbed dpkg architecture: arm64 149s autopkgtest [03:16:02]: @@@@@@@@@@@@@@@@@@@@ apt-source nanopolish 151s Get:1 http://ftpmaster.internal/ubuntu noble/universe nanopolish 0.14.0-1ubuntu1 (dsc) [2256 B] 151s Get:2 http://ftpmaster.internal/ubuntu noble/universe nanopolish 0.14.0-1ubuntu1 (tar) [4074 kB] 151s Get:3 http://ftpmaster.internal/ubuntu noble/universe nanopolish 0.14.0-1ubuntu1 (diff) [9120 B] 152s gpgv: Signature made Wed Jan 25 21:10:28 2023 UTC 152s gpgv: using RSA key 7E6D9F62AD7303887A3C1DD04916D7AB1D7A3804 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./nanopolish_0.14.0-1ubuntu1.dsc: no acceptable signature found 152s autopkgtest [03:16:05]: testing package nanopolish version 0.14.0-1ubuntu1 152s autopkgtest [03:16:05]: build not needed 153s autopkgtest [03:16:06]: test run-unit-test: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 156s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 156s Starting 2 pkgProblemResolver with broken count: 0 156s Done 156s Done 156s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 157s The following additional packages will be installed: 157s libaec0 libdeflate0 libgomp1 libhdf5-103-1 libhts3 libhtscodecs2 libslow5-0 157s libstreamvbyte0 libsz2 nanopolish 157s Recommended packages: 157s python3-biopython python3-pysam 157s The following NEW packages will be installed: 157s libaec0 libdeflate0 libgomp1 libhdf5-103-1 libhts3 libhtscodecs2 libslow5-0 157s libstreamvbyte0 libsz2 nanopolish 157s 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 157s 1 not fully installed or removed. 157s Need to get 4309 kB of archives. 157s After this operation, 15.9 MB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 158s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 158s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 158s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 158s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 158s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 158s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 158s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 libslow5-0 arm64 0.7.0+dfsg-2ubuntu4 [61.3 kB] 158s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libstreamvbyte0 arm64 0.4.1-4ubuntu1 [6260 B] 158s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 nanopolish arm64 0.14.0-1ubuntu1 [2337 kB] 158s Fetched 4309 kB in 1s (5460 kB/s) 159s Selecting previously unselected package libgomp1:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74306 files and directories currently installed.) 159s Preparing to unpack .../0-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libaec0:arm64. 159s Preparing to unpack .../1-libaec0_1.1.2-1_arm64.deb ... 159s Unpacking libaec0:arm64 (1.1.2-1) ... 159s Selecting previously unselected package libsz2:arm64. 159s Preparing to unpack .../2-libsz2_1.1.2-1_arm64.deb ... 159s Unpacking libsz2:arm64 (1.1.2-1) ... 159s Selecting previously unselected package libhdf5-103-1:arm64. 159s Preparing to unpack .../3-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 159s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 159s Selecting previously unselected package libdeflate0:arm64. 159s Preparing to unpack .../4-libdeflate0_1.19-1_arm64.deb ... 159s Unpacking libdeflate0:arm64 (1.19-1) ... 159s Selecting previously unselected package libhtscodecs2:arm64. 159s Preparing to unpack .../5-libhtscodecs2_1.6.0-1_arm64.deb ... 159s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 159s Selecting previously unselected package libhts3:arm64. 159s Preparing to unpack .../6-libhts3_1.18+ds-1_arm64.deb ... 159s Unpacking libhts3:arm64 (1.18+ds-1) ... 159s Selecting previously unselected package libslow5-0:arm64. 159s Preparing to unpack .../7-libslow5-0_0.7.0+dfsg-2ubuntu4_arm64.deb ... 159s Unpacking libslow5-0:arm64 (0.7.0+dfsg-2ubuntu4) ... 159s Selecting previously unselected package libstreamvbyte0:arm64. 159s Preparing to unpack .../8-libstreamvbyte0_0.4.1-4ubuntu1_arm64.deb ... 159s Unpacking libstreamvbyte0:arm64 (0.4.1-4ubuntu1) ... 159s Selecting previously unselected package nanopolish. 159s Preparing to unpack .../9-nanopolish_0.14.0-1ubuntu1_arm64.deb ... 159s Unpacking nanopolish (0.14.0-1ubuntu1) ... 159s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 159s Setting up libstreamvbyte0:arm64 (0.4.1-4ubuntu1) ... 159s Setting up libdeflate0:arm64 (1.19-1) ... 159s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 159s Setting up libaec0:arm64 (1.1.2-1) ... 159s Setting up libslow5-0:arm64 (0.7.0+dfsg-2ubuntu4) ... 159s Setting up libsz2:arm64 (1.1.2-1) ... 159s Setting up libhts3:arm64 (1.18+ds-1) ... 159s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 159s Setting up nanopolish (0.14.0-1ubuntu1) ... 159s Setting up autopkgtest-satdep (0) ... 159s Processing triggers for man-db (2.12.0-3) ... 160s Processing triggers for libc-bin (2.39-0ubuntu2) ... 162s (Reading database ... 74397 files and directories currently installed.) 162s Removing autopkgtest-satdep (0) ... 164s autopkgtest [03:16:17]: test run-unit-test: [----------------------- 164s =============================================================================== 164s All tests passed (636 assertions in 6 test cases) 164s 164s autopkgtest [03:16:17]: test run-unit-test: -----------------------] 165s autopkgtest [03:16:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 165s run-unit-test PASS 165s autopkgtest [03:16:18]: @@@@@@@@@@@@@@@@@@@@ summary 165s run-unit-test PASS 169s Creating nova instance adt-noble-arm64-nanopolish-20240311-031333-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240311.img (UUID 900cfff9-7f1a-42c7-81a7-22635cd2a5f9)...