0s autopkgtest [17:02:02]: starting date and time: 2024-03-16 17:02:02+0000 0s autopkgtest [17:02:02]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:02:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lb8ns5g_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:hdf5,src:curl,src:libpsl,src:mpich,src:openmpi,src:openssl,src:orthanc-python,src:pmix --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=hdf5/1.10.10+repack-3.1ubuntu3 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 mpich/4.2.0-5build1 openmpi/4.1.6-6ubuntu1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-30.secgroup --name adt-noble-arm64-nanook-20240316-170202-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 100s autopkgtest [17:03:42]: testbed dpkg architecture: arm64 100s autopkgtest [17:03:42]: testbed apt version: 2.7.12 100s autopkgtest [17:03:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 104s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 104s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 104s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 104s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 104s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 105s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 105s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 105s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 110s Fetched 9063 kB in 4s (2201 kB/s) 111s Reading package lists... 115s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s Calculating upgrade... 118s The following packages will be REMOVED: 118s libssl3 118s The following NEW packages will be installed: 118s libssl3t64 118s The following packages have been kept back: 118s curl 118s The following packages will be upgraded: 118s openssl 118s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 118s Need to get 2753 kB of archives. 118s After this operation, 72.7 kB of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 119s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 120s Fetched 2753 kB in 1s (3750 kB/s) 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 120s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 120s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 120s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 120s wget depends on libssl3 (>= 3.0.0). 120s u-boot-tools depends on libssl3 (>= 3.0.0). 120s tnftp depends on libssl3 (>= 3.0.0). 120s tcpdump depends on libssl3 (>= 3.0.0). 120s systemd-resolved depends on libssl3 (>= 3.0.0). 120s systemd depends on libssl3 (>= 3.0.0). 120s sudo depends on libssl3 (>= 3.0.0). 120s sbsigntool depends on libssl3 (>= 3.0.0). 120s rsync depends on libssl3 (>= 3.0.0). 120s python3-cryptography depends on libssl3 (>= 3.0.0). 120s openssh-server depends on libssl3 (>= 3.0.10). 120s openssh-client depends on libssl3 (>= 3.0.10). 120s mtd-utils depends on libssl3 (>= 3.0.0). 120s mokutil depends on libssl3 (>= 3.0.0). 120s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 120s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 120s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 120s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 120s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 120s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 120s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 120s libnvme1 depends on libssl3 (>= 3.0.0). 120s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 120s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 120s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 120s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 120s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 120s kmod depends on libssl3 (>= 3.0.0). 120s dhcpcd-base depends on libssl3 (>= 3.0.0). 120s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 120s 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 120s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 120s Selecting previously unselected package libssl3t64:arm64. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 121s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 121s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 121s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 121s Setting up openssl (3.0.13-0ubuntu1) ... 121s Processing triggers for man-db (2.12.0-3) ... 122s Processing triggers for libc-bin (2.39-0ubuntu2) ... 122s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 125s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 129s Reading package lists... 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s Calculating upgrade... 132s The following packages have been kept back: 132s curl 132s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 134s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 137s autopkgtest [17:04:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 138s autopkgtest [17:04:20]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook 141s Get:1 http://ftpmaster.internal/ubuntu noble/universe nanook 1.33+dfsg-5 (dsc) [2100 B] 141s Get:2 http://ftpmaster.internal/ubuntu noble/universe nanook 1.33+dfsg-5 (tar) [95.2 kB] 141s Get:3 http://ftpmaster.internal/ubuntu noble/universe nanook 1.33+dfsg-5 (diff) [1818 kB] 141s gpgv: Signature made Tue Nov 29 11:02:40 2022 UTC 141s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 141s gpgv: issuer "tille@debian.org" 141s gpgv: Can't check signature: No public key 141s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-5.dsc: no acceptable signature found 141s autopkgtest [17:04:23]: testing package nanook version 1.33+dfsg-5 142s autopkgtest [17:04:24]: build not needed 143s autopkgtest [17:04:25]: test run-unit-test: preparing testbed 147s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Starting pkgProblemResolver with broken count: 0 149s Starting 2 pkgProblemResolver with broken count: 0 149s Done 150s The following additional packages will be installed: 150s ca-certificates-java curl default-jre-headless fontconfig fontconfig-config 150s fonts-dejavu-core fonts-dejavu-mono fonts-lmodern hdf5-tools java-common 150s last-align libaec0 libapache-pom-java libasound2 libasound2-data 150s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcairo2 150s libcommons-io-java libcommons-parent-java libcups2 libcurl4t64 libdatrie1 150s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 150s libharfbuzz0b libhdf5-103-1t64 libice6 libjbig0 libjpeg-turbo8 libjpeg8 150s libkpathsea6 liblapack3 liblcms2-2 liblerc4 libpango-1.0-0 150s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcsclite1 150s libpixman-1-0 libpotrace0 libpsl5t64 libptexenc1 libsharpyuv0 libsm6 150s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 150s libtiff6 libtk8.6 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 150s libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 littler nanook 150s nanook-examples openjdk-21-jre-headless r-base-core r-cran-cli 150s r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue 150s r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice 150s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 150s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 150s r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 150s r-cran-reshape r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 150s r-cran-vctrs r-cran-viridislite r-cran-withr t1utils tex-common texlive-base 150s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 150s Suggested packages: 150s default-jre libasound2-plugins alsa-utils libcommons-io-java-doc cups-common 150s liblcms2-utils pcscd tcl8.6 tk8.6 libnss-mdns fonts-dejavu-extra 150s fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei 150s | fonts-wqy-zenhei fonts-indic elpa-ess r-doc-info | r-doc-pdf r-mathlib 150s r-base-html r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 150s r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-png r-cran-jpeg r-cran-knitr 150s r-cran-rmarkdown r-cran-viridis r-cran-covr r-cran-magick r-cran-sf 150s r-cran-getopt r-cran-bit64 r-cran-dbi r-cran-formattable r-cran-nanotime 150s r-cran-palmerpenguins r-cran-stringi r-cran-survival r-cran-units 150s r-cran-vdiffr r-cran-testthat r-cran-inline r-cran-bench r-cran-blob 150s r-cran-brio r-cran-callr r-cran-crayon r-cran-evaluate r-cran-here 150s r-cran-hms r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-purrr 150s r-cran-tidyr debhelper ghostscript gv | postscript-viewer perl-tk xpdf 150s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 150s wp2latex 150s Recommended packages: 150s python3-pil parallel alsa-ucm-conf alsa-topology-conf blasr bwa 150s r-recommended r-base-dev r-doc-html r-cran-callr r-cran-covr r-cran-crayon 150s r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-knitr 150s r-cran-mockery r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 150s r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-unitizer r-cran-dplyr 150s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 150s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 150s r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-dbi r-cran-rsqlite 150s r-cran-waldo r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-abind 150s r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools r-cran-fs 150s r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-stringi 150s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-generics 150s r-cran-pkgdown r-cran-zeallot lmodern dvisvgm libfile-mimeinfo-perl 150s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 151s The following packages will be REMOVED: 151s libcurl4 libpsl5 151s The following NEW packages will be installed: 151s autopkgtest-satdep ca-certificates-java default-jre-headless fontconfig 151s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern 151s hdf5-tools java-common last-align libaec0 libapache-pom-java libasound2 151s libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 151s libblas3 libcairo2 libcommons-io-java libcommons-parent-java libcups2 151s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 151s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libice6 libjbig0 151s libjpeg-turbo8 libjpeg8 libkpathsea6 liblapack3 liblcms2-2 liblerc4 151s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 151s libpaper1 libpcsclite1 libpixman-1-0 libpotrace0 libpsl5t64 libptexenc1 151s libsharpyuv0 libsm6 libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 151s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxaw7 libxcb-render0 151s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 151s libzzip-0-13 littler nanook nanook-examples openjdk-21-jre-headless 151s r-base-core r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver 151s r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-isoband 151s r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler 151s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell 151s r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr 151s r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape r-cran-rlang 151s r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite 151s r-cran-withr t1utils tex-common texlive-base texlive-binaries 151s texlive-latex-base unzip x11-common xdg-utils zip 151s The following packages will be upgraded: 151s curl 151s 1 upgraded, 121 newly installed, 2 to remove and 0 not upgraded. 151s Need to get 158 MB/158 MB of archives. 151s After this operation, 462 MB of additional disk space will be used. 151s Get:1 /tmp/autopkgtest.AGTjgn/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 151s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 151s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 151s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 151s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 151s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 151s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 151s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 151s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 151s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 151s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 151s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 151s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 151s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 151s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 151s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 151s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 151s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 151s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 152s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 152s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 152s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 152s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 154s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 154s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 154s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 154s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 154s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 154s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [1192 kB] 154s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 hdf5-tools arm64 1.10.10+repack-3.1ubuntu3 [315 kB] 154s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 last-align arm64 1542-1 [780 kB] 154s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 154s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 154s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 154s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 154s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 154s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 154s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 154s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 154s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 154s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 154s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 154s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 154s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 154s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 154s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 154s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 154s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 154s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 154s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 154s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 154s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 154s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 154s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 154s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 154s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 154s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 155s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 155s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 155s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 155s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 155s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 155s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 155s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 155s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 155s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 155s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 155s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 155s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 155s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 155s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 155s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 155s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 155s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 155s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 155s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 155s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 155s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 155s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 155s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 156s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 156s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 156s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 156s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 156s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 156s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 156s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 156s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 156s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 156s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 156s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 156s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 156s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 157s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 157s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 157s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 157s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 157s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 157s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 157s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 157s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 157s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 157s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 157s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 157s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 157s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 157s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 157s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 157s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 157s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 158s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 158s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 158s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 158s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 158s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape all 0.8.9-1 [168 kB] 158s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 158s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 158s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 158s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 159s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 159s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 nanook all 1.33+dfsg-5 [194 kB] 159s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 nanook-examples all 1.33+dfsg-5 [1814 kB] 160s Preconfiguring packages ... 160s Fetched 158 MB in 8s (19.1 MB/s) 160s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 160s wget depends on libpsl5 (>= 0.16.0). 160s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 160s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 160s 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 160s Removing libpsl5:arm64 (0.21.2-1build1) ... 160s Selecting previously unselected package libpsl5t64:arm64. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75847 files and directories currently installed.) 161s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 161s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 161s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 161s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75853 files and directories currently installed.) 161s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 161s Selecting previously unselected package libcurl4t64:arm64. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75848 files and directories currently installed.) 161s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 161s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 161s Selecting previously unselected package ca-certificates-java. 161s Preparing to unpack .../001-ca-certificates-java_20240118_all.deb ... 161s Unpacking ca-certificates-java (20240118) ... 161s Selecting previously unselected package java-common. 161s Preparing to unpack .../002-java-common_0.75+exp1_all.deb ... 161s Unpacking java-common (0.75+exp1) ... 161s Selecting previously unselected package libavahi-common-data:arm64. 161s Preparing to unpack .../003-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 161s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 161s Selecting previously unselected package libavahi-common3:arm64. 161s Preparing to unpack .../004-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 161s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 161s Selecting previously unselected package libavahi-client3:arm64. 161s Preparing to unpack .../005-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 161s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 161s Selecting previously unselected package libcups2:arm64. 161s Preparing to unpack .../006-libcups2_2.4.6-0ubuntu3_arm64.deb ... 161s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 162s Selecting previously unselected package liblcms2-2:arm64. 162s Preparing to unpack .../007-liblcms2-2_2.14-2_arm64.deb ... 162s Unpacking liblcms2-2:arm64 (2.14-2) ... 162s Selecting previously unselected package libjpeg-turbo8:arm64. 162s Preparing to unpack .../008-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 162s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 162s Selecting previously unselected package libjpeg8:arm64. 162s Preparing to unpack .../009-libjpeg8_8c-2ubuntu11_arm64.deb ... 162s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 162s Selecting previously unselected package fonts-dejavu-mono. 162s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-mono (2.37-8) ... 162s Selecting previously unselected package fonts-dejavu-core. 162s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-core (2.37-8) ... 162s Selecting previously unselected package fontconfig-config. 162s Preparing to unpack .../012-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 162s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 163s Selecting previously unselected package libfontconfig1:arm64. 163s Preparing to unpack .../013-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 163s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 163s Selecting previously unselected package libasound2-data. 163s Preparing to unpack .../014-libasound2-data_1.2.10-3build1_all.deb ... 163s Unpacking libasound2-data (1.2.10-3build1) ... 163s Selecting previously unselected package libasound2:arm64. 163s Preparing to unpack .../015-libasound2_1.2.10-3build1_arm64.deb ... 163s Unpacking libasound2:arm64 (1.2.10-3build1) ... 163s Selecting previously unselected package libgraphite2-3:arm64. 163s Preparing to unpack .../016-libgraphite2-3_1.3.14-2_arm64.deb ... 163s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 163s Selecting previously unselected package libharfbuzz0b:arm64. 163s Preparing to unpack .../017-libharfbuzz0b_8.3.0-2_arm64.deb ... 163s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 163s Selecting previously unselected package libpcsclite1:arm64. 163s Preparing to unpack .../018-libpcsclite1_2.0.0-1_arm64.deb ... 163s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 163s Selecting previously unselected package openjdk-21-jre-headless:arm64. 163s Preparing to unpack .../019-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 163s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 166s Selecting previously unselected package default-jre-headless. 166s Preparing to unpack .../020-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 166s Unpacking default-jre-headless (2:1.21-75+exp1) ... 166s Selecting previously unselected package fontconfig. 166s Preparing to unpack .../021-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 166s Unpacking fontconfig (2.15.0-1ubuntu1) ... 166s Selecting previously unselected package fonts-lmodern. 166s Preparing to unpack .../022-fonts-lmodern_2.005-1_all.deb ... 166s Unpacking fonts-lmodern (2.005-1) ... 166s Selecting previously unselected package libaec0:arm64. 166s Preparing to unpack .../023-libaec0_1.1.2-1_arm64.deb ... 166s Unpacking libaec0:arm64 (1.1.2-1) ... 167s Selecting previously unselected package libsz2:arm64. 167s Preparing to unpack .../024-libsz2_1.1.2-1_arm64.deb ... 167s Unpacking libsz2:arm64 (1.1.2-1) ... 167s Selecting previously unselected package libhdf5-103-1t64:arm64. 167s Preparing to unpack .../025-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 167s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 167s Selecting previously unselected package hdf5-tools. 167s Preparing to unpack .../026-hdf5-tools_1.10.10+repack-3.1ubuntu3_arm64.deb ... 167s Unpacking hdf5-tools (1.10.10+repack-3.1ubuntu3) ... 167s Selecting previously unselected package last-align. 167s Preparing to unpack .../027-last-align_1542-1_arm64.deb ... 167s Unpacking last-align (1542-1) ... 167s Selecting previously unselected package libapache-pom-java. 167s Preparing to unpack .../028-libapache-pom-java_29-2_all.deb ... 167s Unpacking libapache-pom-java (29-2) ... 167s Selecting previously unselected package libblas3:arm64. 167s Preparing to unpack .../029-libblas3_3.12.0-3_arm64.deb ... 167s Unpacking libblas3:arm64 (3.12.0-3) ... 167s Selecting previously unselected package libpixman-1-0:arm64. 167s Preparing to unpack .../030-libpixman-1-0_0.42.2-1_arm64.deb ... 167s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 167s Selecting previously unselected package libxcb-render0:arm64. 167s Preparing to unpack .../031-libxcb-render0_1.15-1_arm64.deb ... 167s Unpacking libxcb-render0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxcb-shm0:arm64. 167s Preparing to unpack .../032-libxcb-shm0_1.15-1_arm64.deb ... 167s Unpacking libxcb-shm0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxrender1:arm64. 167s Preparing to unpack .../033-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 167s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 167s Selecting previously unselected package libcairo2:arm64. 167s Preparing to unpack .../034-libcairo2_1.18.0-1_arm64.deb ... 167s Unpacking libcairo2:arm64 (1.18.0-1) ... 168s Selecting previously unselected package libcommons-parent-java. 168s Preparing to unpack .../035-libcommons-parent-java_56-1_all.deb ... 168s Unpacking libcommons-parent-java (56-1) ... 168s Selecting previously unselected package libcommons-io-java. 168s Preparing to unpack .../036-libcommons-io-java_2.11.0-2_all.deb ... 168s Unpacking libcommons-io-java (2.11.0-2) ... 168s Selecting previously unselected package libdatrie1:arm64. 168s Preparing to unpack .../037-libdatrie1_0.2.13-3_arm64.deb ... 168s Unpacking libdatrie1:arm64 (0.2.13-3) ... 168s Selecting previously unselected package libdeflate0:arm64. 168s Preparing to unpack .../038-libdeflate0_1.19-1_arm64.deb ... 168s Unpacking libdeflate0:arm64 (1.19-1) ... 168s Selecting previously unselected package libgfortran5:arm64. 168s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 168s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package libgomp1:arm64. 168s Preparing to unpack .../040-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 168s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package x11-common. 168s Preparing to unpack .../041-x11-common_1%3a7.7+23ubuntu2_all.deb ... 168s Unpacking x11-common (1:7.7+23ubuntu2) ... 168s Selecting previously unselected package libice6:arm64. 168s Preparing to unpack .../042-libice6_2%3a1.0.10-1build2_arm64.deb ... 168s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 168s Selecting previously unselected package libkpathsea6:arm64. 168s Preparing to unpack .../043-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 168s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 168s Selecting previously unselected package liblapack3:arm64. 168s Preparing to unpack .../044-liblapack3_3.12.0-3_arm64.deb ... 168s Unpacking liblapack3:arm64 (3.12.0-3) ... 169s Selecting previously unselected package liblerc4:arm64. 169s Preparing to unpack .../045-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 169s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 169s Selecting previously unselected package libthai-data. 169s Preparing to unpack .../046-libthai-data_0.1.29-2_all.deb ... 169s Unpacking libthai-data (0.1.29-2) ... 169s Selecting previously unselected package libthai0:arm64. 169s Preparing to unpack .../047-libthai0_0.1.29-2_arm64.deb ... 169s Unpacking libthai0:arm64 (0.1.29-2) ... 169s Selecting previously unselected package libpango-1.0-0:arm64. 169s Preparing to unpack .../048-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpangoft2-1.0-0:arm64. 169s Preparing to unpack .../049-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpangocairo-1.0-0:arm64. 169s Preparing to unpack .../050-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpaper1:arm64. 169s Preparing to unpack .../051-libpaper1_1.1.29_arm64.deb ... 169s Unpacking libpaper1:arm64 (1.1.29) ... 169s Selecting previously unselected package libpaper-utils. 169s Preparing to unpack .../052-libpaper-utils_1.1.29_arm64.deb ... 169s Unpacking libpaper-utils (1.1.29) ... 169s Selecting previously unselected package libpotrace0:arm64. 169s Preparing to unpack .../053-libpotrace0_1.16-2_arm64.deb ... 169s Unpacking libpotrace0:arm64 (1.16-2) ... 169s Selecting previously unselected package libptexenc1:arm64. 169s Preparing to unpack .../054-libptexenc1_2023.20230311.66589-9_arm64.deb ... 169s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 169s Selecting previously unselected package libsharpyuv0:arm64. 169s Preparing to unpack .../055-libsharpyuv0_1.3.2-0.4_arm64.deb ... 169s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 169s Selecting previously unselected package libsm6:arm64. 169s Preparing to unpack .../056-libsm6_2%3a1.2.3-1build2_arm64.deb ... 169s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 170s Selecting previously unselected package libsynctex2:arm64. 170s Preparing to unpack .../057-libsynctex2_2023.20230311.66589-9_arm64.deb ... 170s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 170s Selecting previously unselected package libtcl8.6:arm64. 170s Preparing to unpack .../058-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 170s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 170s Selecting previously unselected package libteckit0:arm64. 170s Preparing to unpack .../059-libteckit0_2.5.12+ds1-1_arm64.deb ... 170s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 170s Selecting previously unselected package libtexlua53-5:arm64. 170s Preparing to unpack .../060-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 170s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 170s Selecting previously unselected package libjbig0:arm64. 170s Preparing to unpack .../061-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 170s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 170s Selecting previously unselected package libwebp7:arm64. 170s Preparing to unpack .../062-libwebp7_1.3.2-0.4_arm64.deb ... 170s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 170s Selecting previously unselected package libtiff6:arm64. 170s Preparing to unpack .../063-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 170s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 170s Selecting previously unselected package libxft2:arm64. 170s Preparing to unpack .../064-libxft2_2.3.6-1_arm64.deb ... 170s Unpacking libxft2:arm64 (2.3.6-1) ... 170s Selecting previously unselected package libxss1:arm64. 170s Preparing to unpack .../065-libxss1_1%3a1.2.3-1build2_arm64.deb ... 170s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 170s Selecting previously unselected package libtk8.6:arm64. 170s Preparing to unpack .../066-libtk8.6_8.6.13-2_arm64.deb ... 170s Unpacking libtk8.6:arm64 (8.6.13-2) ... 170s Selecting previously unselected package libxt6:arm64. 171s Preparing to unpack .../067-libxt6_1%3a1.2.1-1.1_arm64.deb ... 171s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 171s Selecting previously unselected package libxmu6:arm64. 171s Preparing to unpack .../068-libxmu6_2%3a1.1.3-3_arm64.deb ... 171s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 171s Selecting previously unselected package libxpm4:arm64. 171s Preparing to unpack .../069-libxpm4_1%3a3.5.17-1_arm64.deb ... 171s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 171s Selecting previously unselected package libxaw7:arm64. 171s Preparing to unpack .../070-libxaw7_2%3a1.0.14-1_arm64.deb ... 171s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 171s Selecting previously unselected package libxi6:arm64. 171s Preparing to unpack .../071-libxi6_2%3a1.8.1-1_arm64.deb ... 171s Unpacking libxi6:arm64 (2:1.8.1-1) ... 171s Selecting previously unselected package libzzip-0-13:arm64. 171s Preparing to unpack .../072-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 171s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 171s Selecting previously unselected package zip. 171s Preparing to unpack .../073-zip_3.0-13_arm64.deb ... 171s Unpacking zip (3.0-13) ... 171s Selecting previously unselected package unzip. 171s Preparing to unpack .../074-unzip_6.0-28ubuntu3_arm64.deb ... 171s Unpacking unzip (6.0-28ubuntu3) ... 171s Selecting previously unselected package xdg-utils. 171s Preparing to unpack .../075-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 171s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 171s Selecting previously unselected package r-base-core. 171s Preparing to unpack .../076-r-base-core_4.3.2-1build1_arm64.deb ... 171s Unpacking r-base-core (4.3.2-1build1) ... 172s Selecting previously unselected package r-cran-littler. 172s Preparing to unpack .../077-r-cran-littler_0.3.19-1_arm64.deb ... 172s Unpacking r-cran-littler (0.3.19-1) ... 173s Selecting previously unselected package littler. 173s Preparing to unpack .../078-littler_0.3.19-1_all.deb ... 173s Unpacking littler (0.3.19-1) ... 173s Selecting previously unselected package r-cran-cli. 173s Preparing to unpack .../079-r-cran-cli_3.6.2-1_arm64.deb ... 173s Unpacking r-cran-cli (3.6.2-1) ... 173s Selecting previously unselected package r-cran-glue. 173s Preparing to unpack .../080-r-cran-glue_1.7.0-1_arm64.deb ... 173s Unpacking r-cran-glue (1.7.0-1) ... 173s Selecting previously unselected package r-cran-rlang. 173s Preparing to unpack .../081-r-cran-rlang_1.1.3-1_arm64.deb ... 173s Unpacking r-cran-rlang (1.1.3-1) ... 173s Selecting previously unselected package r-cran-lifecycle. 173s Preparing to unpack .../082-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 173s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 173s Selecting previously unselected package r-cran-gtable. 173s Preparing to unpack .../083-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 173s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 173s Selecting previously unselected package r-cran-isoband. 173s Preparing to unpack .../084-r-cran-isoband_0.2.7-1_arm64.deb ... 173s Unpacking r-cran-isoband (0.2.7-1) ... 173s Selecting previously unselected package r-cran-mass. 173s Preparing to unpack .../085-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 173s Unpacking r-cran-mass (7.3-60.0.1-1) ... 174s Selecting previously unselected package r-cran-lattice. 174s Preparing to unpack .../086-r-cran-lattice_0.22-5-1_arm64.deb ... 174s Unpacking r-cran-lattice (0.22-5-1) ... 174s Selecting previously unselected package r-cran-nlme. 174s Preparing to unpack .../087-r-cran-nlme_3.1.164-1_arm64.deb ... 174s Unpacking r-cran-nlme (3.1.164-1) ... 174s Selecting previously unselected package r-cran-matrix. 174s Preparing to unpack .../088-r-cran-matrix_1.6-5-1_arm64.deb ... 174s Unpacking r-cran-matrix (1.6-5-1) ... 174s Selecting previously unselected package r-cran-mgcv. 174s Preparing to unpack .../089-r-cran-mgcv_1.9-1-1_arm64.deb ... 174s Unpacking r-cran-mgcv (1.9-1-1) ... 174s Selecting previously unselected package r-cran-farver. 174s Preparing to unpack .../090-r-cran-farver_2.1.1-1_arm64.deb ... 174s Unpacking r-cran-farver (2.1.1-1) ... 174s Selecting previously unselected package r-cran-labeling. 174s Preparing to unpack .../091-r-cran-labeling_0.4.3-1_all.deb ... 174s Unpacking r-cran-labeling (0.4.3-1) ... 174s Selecting previously unselected package r-cran-colorspace. 174s Preparing to unpack .../092-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 174s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 175s Selecting previously unselected package r-cran-munsell. 175s Preparing to unpack .../093-r-cran-munsell_0.5.0-2build1_all.deb ... 175s Unpacking r-cran-munsell (0.5.0-2build1) ... 175s Selecting previously unselected package r-cran-r6. 175s Preparing to unpack .../094-r-cran-r6_2.5.1-1_all.deb ... 175s Unpacking r-cran-r6 (2.5.1-1) ... 175s Selecting previously unselected package r-cran-rcolorbrewer. 175s Preparing to unpack .../095-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 175s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 175s Selecting previously unselected package r-cran-viridislite. 175s Preparing to unpack .../096-r-cran-viridislite_0.4.2-2_all.deb ... 175s Unpacking r-cran-viridislite (0.4.2-2) ... 175s Selecting previously unselected package r-cran-scales. 175s Preparing to unpack .../097-r-cran-scales_1.3.0-1_all.deb ... 175s Unpacking r-cran-scales (1.3.0-1) ... 175s Selecting previously unselected package r-cran-fansi. 175s Preparing to unpack .../098-r-cran-fansi_1.0.5-1_arm64.deb ... 175s Unpacking r-cran-fansi (1.0.5-1) ... 175s Selecting previously unselected package r-cran-magrittr. 175s Preparing to unpack .../099-r-cran-magrittr_2.0.3-1_arm64.deb ... 175s Unpacking r-cran-magrittr (2.0.3-1) ... 175s Selecting previously unselected package r-cran-utf8. 176s Preparing to unpack .../100-r-cran-utf8_1.2.4-1_arm64.deb ... 176s Unpacking r-cran-utf8 (1.2.4-1) ... 176s Selecting previously unselected package r-cran-vctrs. 176s Preparing to unpack .../101-r-cran-vctrs_0.6.5-1_arm64.deb ... 176s Unpacking r-cran-vctrs (0.6.5-1) ... 176s Selecting previously unselected package r-cran-pillar. 176s Preparing to unpack .../102-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 176s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 176s Selecting previously unselected package r-cran-pkgconfig. 176s Preparing to unpack .../103-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 176s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 176s Selecting previously unselected package r-cran-tibble. 176s Preparing to unpack .../104-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 176s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 176s Selecting previously unselected package r-cran-withr. 176s Preparing to unpack .../105-r-cran-withr_2.5.0-1_all.deb ... 176s Unpacking r-cran-withr (2.5.0-1) ... 176s Selecting previously unselected package r-cran-ggplot2. 176s Preparing to unpack .../106-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 176s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 177s Selecting previously unselected package r-cran-gridextra. 177s Preparing to unpack .../107-r-cran-gridextra_2.3-3build1_all.deb ... 177s Unpacking r-cran-gridextra (2.3-3build1) ... 177s Selecting previously unselected package r-cran-pkgkitten. 177s Preparing to unpack .../108-r-cran-pkgkitten_0.2.3-1_all.deb ... 177s Unpacking r-cran-pkgkitten (0.2.3-1) ... 177s Selecting previously unselected package r-cran-rcpp. 177s Preparing to unpack .../109-r-cran-rcpp_1.0.12-1_arm64.deb ... 177s Unpacking r-cran-rcpp (1.0.12-1) ... 178s Selecting previously unselected package r-cran-plyr. 178s Preparing to unpack .../110-r-cran-plyr_1.8.9-1_arm64.deb ... 178s Unpacking r-cran-plyr (1.8.9-1) ... 178s Selecting previously unselected package r-cran-reshape. 178s Preparing to unpack .../111-r-cran-reshape_0.8.9-1_all.deb ... 178s Unpacking r-cran-reshape (0.8.9-1) ... 178s Selecting previously unselected package tex-common. 178s Preparing to unpack .../112-tex-common_6.18_all.deb ... 178s Unpacking tex-common (6.18) ... 178s Selecting previously unselected package t1utils. 178s Preparing to unpack .../113-t1utils_1.41-4build2_arm64.deb ... 178s Unpacking t1utils (1.41-4build2) ... 178s Selecting previously unselected package texlive-binaries. 178s Preparing to unpack .../114-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 178s Unpacking texlive-binaries (2023.20230311.66589-9) ... 179s Selecting previously unselected package texlive-base. 179s Preparing to unpack .../115-texlive-base_2023.20240207-1_all.deb ... 179s Unpacking texlive-base (2023.20240207-1) ... 182s Selecting previously unselected package texlive-latex-base. 182s Preparing to unpack .../116-texlive-latex-base_2023.20240207-1_all.deb ... 182s Unpacking texlive-latex-base (2023.20240207-1) ... 183s Selecting previously unselected package nanook. 183s Preparing to unpack .../117-nanook_1.33+dfsg-5_all.deb ... 183s Unpacking nanook (1.33+dfsg-5) ... 183s Selecting previously unselected package nanook-examples. 183s Preparing to unpack .../118-nanook-examples_1.33+dfsg-5_all.deb ... 183s Unpacking nanook-examples (1.33+dfsg-5) ... 183s Selecting previously unselected package autopkgtest-satdep. 183s Preparing to unpack .../119-1-autopkgtest-satdep.deb ... 183s Unpacking autopkgtest-satdep (0) ... 183s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 183s Setting up liblcms2-2:arm64 (2.14-2) ... 184s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 184s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 184s Setting up libpaper1:arm64 (1.1.29) ... 184s 184s Creating config file /etc/papersize with new version 184s Setting up nanook-examples (1.33+dfsg-5) ... 184s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 184s Setting up libxpm4:arm64 (1:3.5.17-1) ... 184s Setting up libxi6:arm64 (2:1.8.1-1) ... 184s Setting up java-common (0.75+exp1) ... 184s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 184s Setting up libdatrie1:arm64 (0.2.13-3) ... 184s Setting up libxcb-render0:arm64 (1.15-1) ... 184s Setting up unzip (6.0-28ubuntu3) ... 184s Setting up x11-common (1:7.7+23ubuntu2) ... 185s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 185s Setting up libdeflate0:arm64 (1.19-1) ... 185s Setting up libxcb-shm0:arm64 (1.15-1) ... 185s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 185s Setting up libpaper-utils (1.1.29) ... 185s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 185s Setting up libaec0:arm64 (1.1.2-1) ... 185s Setting up last-align (1542-1) ... 185s Setting up libasound2-data (1.2.10-3build1) ... 185s Setting up tex-common (6.18) ... 186s update-language: texlive-base not installed and configured, doing nothing! 186s Setting up zip (3.0-13) ... 186s Setting up libblas3:arm64 (3.12.0-3) ... 186s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 186s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 186s Setting up libapache-pom-java (29-2) ... 186s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 186s Setting up t1utils (1.41-4build2) ... 186s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 186s Setting up fonts-dejavu-mono (2.37-8) ... 186s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 186s Setting up fonts-dejavu-core (2.37-8) ... 186s Setting up libpcsclite1:arm64 (2.0.0-1) ... 186s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 186s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 186s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 186s Setting up libwebp7:arm64 (1.3.2-0.4) ... 186s Setting up libasound2:arm64 (1.2.10-3build1) ... 186s Setting up fonts-lmodern (2.005-1) ... 186s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 186s Setting up libthai-data (0.1.29-2) ... 186s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 186s Setting up ca-certificates-java (20240118) ... 186s No JRE found. Skipping Java certificates setup. 186s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 186s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 186s Setting up libsz2:arm64 (1.1.2-1) ... 186s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 186s Setting up libpotrace0:arm64 (1.16-2) ... 186s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 186s Setting up libice6:arm64 (2:1.0.10-1build2) ... 186s Setting up liblapack3:arm64 (3.12.0-3) ... 186s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 186s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 186s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 187s Setting up libcommons-parent-java (56-1) ... 187s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 187s Setting up libthai0:arm64 (0.1.29-2) ... 187s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 187s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 187s Setting up curl (8.5.0-2ubuntu7) ... 187s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 187s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 187s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 187s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 187s Setting up fontconfig (2.15.0-1ubuntu1) ... 189s Regenerating fonts cache... done. 189s Setting up libxft2:arm64 (2.3.6-1) ... 189s Setting up libcommons-io-java (2.11.0-2) ... 189s Setting up libtk8.6:arm64 (8.6.13-2) ... 189s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 189s Setting up libcairo2:arm64 (1.18.0-1) ... 189s Setting up hdf5-tools (1.10.10+repack-3.1ubuntu3) ... 189s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 189s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 189s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 189s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 189s Setting up libxmu6:arm64 (2:1.1.3-3) ... 189s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 189s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 189s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 189s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 189s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 189s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 189s Setting up libxaw7:arm64 (2:1.0.14-1) ... 189s Setting up r-base-core (4.3.2-1build1) ... 189s 189s Creating config file /etc/R/Renviron with new version 190s Setting up r-cran-labeling (0.4.3-1) ... 190s Setting up r-cran-lattice (0.22-5-1) ... 190s Setting up r-cran-nlme (3.1.164-1) ... 190s Setting up r-cran-farver (2.1.1-1) ... 190s Setting up r-cran-viridislite (0.4.2-2) ... 190s Setting up texlive-binaries (2023.20230311.66589-9) ... 190s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 190s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 190s Setting up r-cran-r6 (2.5.1-1) ... 190s Setting up r-cran-pkgkitten (0.2.3-1) ... 190s Setting up texlive-base (2023.20240207-1) ... 191s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 192s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 193s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 193s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 195s Setting up r-cran-magrittr (2.0.3-1) ... 195s Setting up r-cran-littler (0.3.19-1) ... 195s Setting up r-cran-rcpp (1.0.12-1) ... 195s Setting up r-cran-rlang (1.1.3-1) ... 195s Setting up littler (0.3.19-1) ... 195s Setting up r-cran-withr (2.5.0-1) ... 195s Setting up r-cran-fansi (1.0.5-1) ... 195s Setting up r-cran-mass (7.3-60.0.1-1) ... 195s Setting up r-cran-glue (1.7.0-1) ... 195s Setting up r-cran-cli (3.6.2-1) ... 195s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 195s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 195s Setting up r-cran-utf8 (1.2.4-1) ... 195s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 195s Setting up texlive-latex-base (2023.20240207-1) ... 195s Setting up r-cran-plyr (1.8.9-1) ... 195s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 195s Setting up r-cran-isoband (0.2.7-1) ... 195s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 195s Setting up r-cran-matrix (1.6-5-1) ... 195s Setting up r-cran-mgcv (1.9-1-1) ... 195s Setting up r-cran-vctrs (0.6.5-1) ... 195s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 195s Setting up r-cran-reshape (0.8.9-1) ... 195s Setting up r-cran-munsell (0.5.0-2build1) ... 195s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 195s Setting up r-cran-gridextra (2.3-3build1) ... 195s Setting up r-cran-scales (1.3.0-1) ... 195s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 195s Processing triggers for install-info (7.1-3) ... 195s Processing triggers for libc-bin (2.39-0ubuntu2) ... 195s Processing triggers for man-db (2.12.0-3) ... 196s Processing triggers for ca-certificates-java (20240118) ... 197s Adding debian:ACCVRAIZ1.pem 197s Adding debian:AC_RAIZ_FNMT-RCM.pem 197s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 197s Adding debian:ANF_Secure_Server_Root_CA.pem 197s Adding debian:Actalis_Authentication_Root_CA.pem 197s Adding debian:AffirmTrust_Commercial.pem 197s Adding debian:AffirmTrust_Networking.pem 197s Adding debian:AffirmTrust_Premium.pem 197s Adding debian:AffirmTrust_Premium_ECC.pem 197s Adding debian:Amazon_Root_CA_1.pem 197s Adding debian:Amazon_Root_CA_2.pem 197s Adding debian:Amazon_Root_CA_3.pem 197s Adding debian:Amazon_Root_CA_4.pem 197s Adding debian:Atos_TrustedRoot_2011.pem 197s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 197s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 197s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 197s Adding debian:BJCA_Global_Root_CA1.pem 197s Adding debian:BJCA_Global_Root_CA2.pem 197s Adding debian:Baltimore_CyberTrust_Root.pem 197s Adding debian:Buypass_Class_2_Root_CA.pem 197s Adding debian:Buypass_Class_3_Root_CA.pem 197s Adding debian:CA_Disig_Root_R2.pem 198s Adding debian:CFCA_EV_ROOT.pem 198s Adding debian:COMODO_Certification_Authority.pem 198s Adding debian:COMODO_ECC_Certification_Authority.pem 198s Adding debian:COMODO_RSA_Certification_Authority.pem 198s Adding debian:Certainly_Root_E1.pem 198s Adding debian:Certainly_Root_R1.pem 198s Adding debian:Certigna.pem 198s Adding debian:Certigna_Root_CA.pem 198s Adding debian:Certum_EC-384_CA.pem 198s Adding debian:Certum_Trusted_Network_CA.pem 198s Adding debian:Certum_Trusted_Network_CA_2.pem 198s Adding debian:Certum_Trusted_Root_CA.pem 198s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 198s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 198s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 198s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 198s Adding debian:Comodo_AAA_Services_root.pem 198s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 198s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 198s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 198s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 198s Adding debian:DigiCert_Assured_ID_Root_CA.pem 198s Adding debian:DigiCert_Assured_ID_Root_G2.pem 198s Adding debian:DigiCert_Assured_ID_Root_G3.pem 198s Adding debian:DigiCert_Global_Root_CA.pem 198s Adding debian:DigiCert_Global_Root_G2.pem 198s Adding debian:DigiCert_Global_Root_G3.pem 198s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 198s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 198s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 198s Adding debian:DigiCert_Trusted_Root_G4.pem 198s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 198s Adding debian:Entrust_Root_Certification_Authority.pem 198s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 198s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 198s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 198s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 198s Adding debian:GLOBALTRUST_2020.pem 198s Adding debian:GTS_Root_R1.pem 198s Adding debian:GTS_Root_R2.pem 198s Adding debian:GTS_Root_R3.pem 198s Adding debian:GTS_Root_R4.pem 198s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 198s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 198s Adding debian:GlobalSign_Root_CA.pem 198s Adding debian:GlobalSign_Root_CA_-_R3.pem 198s Adding debian:GlobalSign_Root_CA_-_R6.pem 198s Adding debian:GlobalSign_Root_E46.pem 198s Adding debian:GlobalSign_Root_R46.pem 198s Adding debian:Go_Daddy_Class_2_CA.pem 198s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 198s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 198s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 198s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 198s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 198s Adding debian:HiPKI_Root_CA_-_G1.pem 198s Adding debian:Hongkong_Post_Root_CA_3.pem 198s Adding debian:ISRG_Root_X1.pem 198s Adding debian:ISRG_Root_X2.pem 198s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 198s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 198s Adding debian:Izenpe.com.pem 198s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 198s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 198s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 198s Adding debian:NAVER_Global_Root_Certification_Authority.pem 198s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 198s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 198s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 198s Adding debian:QuoVadis_Root_CA_1_G3.pem 198s Adding debian:QuoVadis_Root_CA_2.pem 198s Adding debian:QuoVadis_Root_CA_2_G3.pem 198s Adding debian:QuoVadis_Root_CA_3.pem 198s Adding debian:QuoVadis_Root_CA_3_G3.pem 198s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 198s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 198s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 198s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 198s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 198s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 198s Adding debian:SZAFIR_ROOT_CA2.pem 198s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 198s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 198s Adding debian:SecureSign_RootCA11.pem 198s Adding debian:SecureTrust_CA.pem 198s Adding debian:Secure_Global_CA.pem 198s Adding debian:Security_Communication_ECC_RootCA1.pem 198s Adding debian:Security_Communication_RootCA2.pem 198s Adding debian:Security_Communication_RootCA3.pem 198s Adding debian:Security_Communication_Root_CA.pem 198s Adding debian:Starfield_Class_2_CA.pem 198s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 198s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 198s Adding debian:SwissSign_Gold_CA_-_G2.pem 198s Adding debian:SwissSign_Silver_CA_-_G2.pem 199s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 199s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 199s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 199s Adding debian:TWCA_Global_Root_CA.pem 199s Adding debian:TWCA_Root_Certification_Authority.pem 199s Adding debian:TeliaSonera_Root_CA_v1.pem 199s Adding debian:Telia_Root_CA_v2.pem 199s Adding debian:TrustAsia_Global_Root_CA_G3.pem 199s Adding debian:TrustAsia_Global_Root_CA_G4.pem 199s Adding debian:Trustwave_Global_Certification_Authority.pem 199s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 199s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 199s Adding debian:TunTrust_Root_CA.pem 199s Adding debian:UCA_Extended_Validation_Root.pem 199s Adding debian:UCA_Global_G2_Root.pem 199s Adding debian:USERTrust_ECC_Certification_Authority.pem 199s Adding debian:USERTrust_RSA_Certification_Authority.pem 199s Adding debian:XRamp_Global_CA_Root.pem 199s Adding debian:certSIGN_ROOT_CA.pem 199s Adding debian:certSIGN_Root_CA_G2.pem 199s Adding debian:e-Szigno_Root_CA_2017.pem 199s Adding debian:ePKI_Root_Certification_Authority.pem 199s Adding debian:emSign_ECC_Root_CA_-_C3.pem 199s Adding debian:emSign_ECC_Root_CA_-_G3.pem 199s Adding debian:emSign_Root_CA_-_C1.pem 199s Adding debian:emSign_Root_CA_-_G1.pem 199s Adding debian:vTrus_ECC_Root_CA.pem 199s Adding debian:vTrus_Root_CA.pem 199s done. 199s Setting up default-jre-headless (2:1.21-75+exp1) ... 199s Setting up nanook (1.33+dfsg-5) ... 199s Setting up autopkgtest-satdep (0) ... 199s Processing triggers for tex-common (6.18) ... 200s Running updmap-sys. This may take some time... done. 200s Running mktexlsr /var/lib/texmf ... done. 200s Building format(s) --all. 278s This may take some time... done. 293s (Reading database ... 88515 files and directories currently installed.) 293s Removing autopkgtest-satdep (0) ... 294s autopkgtest [17:06:56]: test run-unit-test: [----------------------- 318s 318s NanoOK v1.33 318s 318s Comments/bugs to: richard.leggett@earlham.ac.uk 318s Follow NanoOK on twitter: @NanoOK_Software 318s 318s Scripts dir: /usr/share/nanook/bin 318s 318s Checking dependencies 318s *** ERROR: Couldn't find Rscript - is R installed? *** 318s pdfTeX 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) 318s h5dump: Version 1.10.10 318s 318s Making directory /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta 318s Checking FAST5 directory structure... 318s Using pass/fail dirs: yes 318s Using batch dirs: no 318s Using barcodes: no 318s 321s Processing [ ] 0/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 321s 321s DONE 321s 321s NanoOK v1.33 321s 321s Comments/bugs to: richard.leggett@earlham.ac.uk 321s Follow NanoOK on twitter: @NanoOK_Software 321s 321s Scripts dir: /usr/share/nanook/bin 321s 321s Checking dependencies 321s *** ERROR: Couldn't find Rscript - is R installed? *** 322s pdfTeX 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) 322s h5dump: Version 1.10.10 322s 322s Making directory /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last 322s Making directory /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last 322s Checking FASTA/Q directory structure... 322s Using pass/fail dirs: yes 322s Using batch dirs: no 322s Using barcodes: no 322s 325s Processing [ ] 0/3 Processing [================ ] 1/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 325s 325s DONE 325s 325s NanoOK v1.33 325s 325s Comments/bugs to: richard.leggett@earlham.ac.uk 325s Follow NanoOK on twitter: @NanoOK_Software 325s 325s Scripts dir: /usr/share/nanook/bin 325s 325s Checking dependencies 325s *** ERROR: Couldn't find Rscript - is R installed? *** 325s pdfTeX 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) 325s h5dump: Version 1.10.10 325s 325s Checking FASTA/Q directory structure... 325s Using pass/fail dirs: yes 325s Using batch dirs: no 325s Using barcodes: no 325s 325s Using .sizes file ecoli_dh10b_cs.fasta.sizes 325s Note: if you have changed the reference file, you need to delete the .sizes file and re-run. 325s 325s Reading reference sizes and making directories 325s Escherichia_coli 4686137 325s Control_sequence 3560 325s 325s Calculating reference GC 325s Escherichia_coli 328s Control_sequence 328s 328s Parsing Template 328s [ ] 0/1 [==================================================] 1/1 328s Warning: not many alignments (1) found to process. 328s 328s Parsing Complement 328s [ ] 0/1 [==================================================] 1/1 328s Warning: not many alignments (1) found to process. 328s 328s Parsing 2D 328s [ ] 0/1 [==================================================] 1/1 328s Warning: not many alignments (1) found to process. 328s 328s Writing analysis files 329s [================ ] 1/3 [================================= ] 2/3 [==================================================] 3/3 329s Writing object 330s 330s Plotting graphs 333s [ ] 0/1 [==================================================] 1/1 333s 333s Making report 333s Can't find /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_Template_lengths.pdf 333s Can't find /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_Complement_lengths.pdf 333s Can't find /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_2D_lengths.pdf 333s Can't find /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_Template_21mers.pdf 333s Can't find /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_Complement_21mers.pdf 333s Can't find /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_2D_21mers.pdf 333s Error: motif list smaller than 10 333s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s Error: motif list smaller than 10 334s 334s Making PDF 334s pdflatex output /tmp/autopkgtest.AGTjgn/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/pdflatex_output_log_last_passonly.txt 335s 335s Done 335s autopkgtest [17:07:37]: test run-unit-test: -----------------------] 336s run-unit-test PASS 336s autopkgtest [17:07:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 336s autopkgtest [17:07:38]: @@@@@@@@@@@@@@@@@@@@ summary 336s run-unit-test PASS 347s Creating nova instance adt-noble-arm64-nanook-20240316-170202-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...