0s autopkgtest [08:22:31]: starting date and time: 2024-03-15 08:22:31+0000 0s autopkgtest [08:22:31]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [08:22:31]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4q04eb_e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gnuplot,src:at-spi2-core,src:glib2.0,src:gtk+3.0,src:libpng1.6,src:qtbase-opensource-src,src:wp2latex,src:wxwidgets3.2 --apt-upgrade murasaki --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=gnuplot/6.0.0+dfsg1-1ubuntu2 at-spi2-core/2.51.90-3 glib2.0/2.79.3-3ubuntu5 gtk+3.0/3.24.41-1.1ubuntu1 libpng1.6/1.6.43-3 qtbase-opensource-src/5.15.12+dfsg-3ubuntu5 wp2latex/4.4~ds-1build1 wxwidgets3.2/3.2.4+dfsg-3.1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-13.secgroup --name adt-noble-arm64-murasaki-20240315-082231-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 863s autopkgtest [08:36:54]: testbed dpkg architecture: arm64 865s autopkgtest [08:36:56]: testbed apt version: 2.7.12 865s autopkgtest [08:36:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 871s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 874s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [49.0 kB] 874s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3587 kB] 877s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 878s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [453 kB] 878s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [612 kB] 878s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 879s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 879s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 879s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3612 kB] 884s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 884s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [52.6 kB] 884s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 946s Fetched 8519 kB in 30s (281 kB/s) 950s Reading package lists... 984s Reading package lists... 988s Building dependency tree... 988s Reading state information... 997s Calculating upgrade... 1002s The following packages will be REMOVED: 1002s libglib2.0-0 1002s The following NEW packages will be installed: 1002s libglib2.0-0t64 xdg-user-dirs 1002s The following packages will be upgraded: 1002s gir1.2-glib-2.0 libglib2.0-data 1003s 2 upgraded, 2 newly installed, 1 to remove and 0 not upgraded. 1003s Need to get 1774 kB of archives. 1003s After this operation, 138 kB of additional disk space will be used. 1003s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 1003s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 1004s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 1004s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 1012s Fetched 1774 kB in 1s (1210 kB/s) 1015s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 1015s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 1015s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 1017s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 1017s udisks2 depends on libglib2.0-0 (>= 2.77.0). 1017s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 1017s python3-gi depends on libglib2.0-0 (>= 2.77.0). 1017s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 1017s netplan.io depends on libglib2.0-0 (>= 2.70.0). 1017s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 1017s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 1017s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 1017s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 1017s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 1017s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 1017s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 1017s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 1017s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 1017s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 1017s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 1017s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 1017s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 1017s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 1017s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 1017s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 1017s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 1017s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 1017s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 1017s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 1017s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 1017s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 1017s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 1017s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 1017s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 1017s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 1017s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 1017s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 1017s fwupd depends on libglib2.0-0 (>= 2.79.0). 1017s bolt depends on libglib2.0-0 (>= 2.56.0). 1017s 1018s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 1018s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 1019s Selecting previously unselected package libglib2.0-0t64:arm64. 1020s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 1020s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 1021s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 1021s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 1021s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 1023s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 1023s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 1024s Selecting previously unselected package xdg-user-dirs. 1024s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 1024s Unpacking xdg-user-dirs (0.18-1) ... 1025s Setting up xdg-user-dirs (0.18-1) ... 1025s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 1025s No schema files found: doing nothing. 1025s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 1025s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 1025s Processing triggers for man-db (2.12.0-3) ... 1046s Processing triggers for libc-bin (2.39-0ubuntu2) ... 1056s Reading package lists... 1065s Building dependency tree... 1065s Reading state information... 1073s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1077s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 1077s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 1077s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 1077s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 1112s Reading package lists... 1113s Reading package lists... 1116s Building dependency tree... 1116s Reading state information... 1122s Calculating upgrade... 1126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1126s Reading package lists... 1130s Building dependency tree... 1130s Reading state information... 1137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1150s autopkgtest [08:41:41]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 1151s autopkgtest [08:41:42]: @@@@@@@@@@@@@@@@@@@@ apt-source murasaki 1174s Get:1 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (dsc) [2787 B] 1174s Get:2 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [3944 kB] 1174s Get:3 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [308 kB] 1174s Get:4 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (diff) [11.4 kB] 1177s gpgv: Signature made Tue Dec 19 15:02:21 2023 UTC 1177s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 1177s gpgv: Can't check signature: No public key 1177s dpkg-source: warning: cannot verify inline signature for ./murasaki_1.68.6-13build4.dsc: no acceptable signature found 1184s autopkgtest [08:42:15]: testing package murasaki version 1.68.6-13build4 1185s autopkgtest [08:42:16]: build not needed 1197s autopkgtest [08:42:28]: test run-unit-test: preparing testbed 1205s Reading package lists... 1210s Building dependency tree... 1210s Reading state information... 1217s Starting pkgProblemResolver with broken count: 0 1218s Starting 2 pkgProblemResolver with broken count: 0 1218s Done 1225s The following additional packages will be installed: 1225s adwaita-icon-theme aglfn at-spi2-common autoconf automake autotools-dev 1225s cpp-13-aarch64-linux-gnu dconf-gsettings-backend dconf-service fontconfig 1225s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13 1225s gcc-13-aarch64-linux-gnu gfortran-13 gfortran-13-aarch64-linux-gnu gnuplot 1225s gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme 1225s humanity-icon-theme icu-devtools imagemagick imagemagick-6-common 1225s imagemagick-6.q16 libamd-comgr2 libamdhip64-5 libasan8 libatk-bridge2.0-0t64 1225s libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 1225s libavahi-common-data libavahi-common3 libbio-perl-perl libblas3 1225s libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-filesystem-dev 1225s libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev 1225s libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex-dev 1225s libboost-regex1.83-dev libboost-regex1.83.0 libboost-system1.83-dev 1225s libboost-system1.83.0 libboost1.83-dev libc-dev-bin libc6-dev 1225s libcairo-gobject2 libcairo2 libcc1-0 libcolord2 libcrypt-dev libcrypto++-dev 1225s libcrypto++8t64 libcups2 libdata-stag-perl libdatrie1 libdav1d7 libdconf1 1225s libde265-0 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 1225s libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev 1225s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 1225s libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-13-dev libgd3 1225s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 1225s libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 1225s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b 1225s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 1225s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 1225s libibverbs-dev libice6 libicu-dev libinput-bin libinput10 libio-string-perl 1225s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 1225s libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 libllvm17 liblqr-1-0 liblsan0 1225s libltdl-dev libltdl7 liblua5.4-0 libmagickcore-6.q16-7 libmagickwand-6.q16-7 1225s libmd4c0 libmpc3 libmtdev1t64 libmunge2 libnl-3-dev libnl-route-3-dev 1225s libnotify4 libnsl-dev libnuma-dev libopenjp2-7 libopenmpi-dev libopenmpi3 1225s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 1225s libpaper1 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 1225s libpmix-dev libpmix2 libpng16-16t64 libpstreams-dev libqt5core5t64 1225s libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 libqt5printsupport5t64 1225s libqt5svg5 libqt5widgets5t64 libraw23 librdmacm1t64 libsharpyuv0 libsm6 1225s libstdc++-13-dev libtcl8.6 libterm-readkey-perl libtext-wrapper-perl 1225s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 1225s libucx0 libvulkan1 libwacom-common libwacom9 libwayland-client0 1225s libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 1225s libwebpmux3 libwxbase3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri2-0 1225s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 1225s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 1225s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 1225s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 libxcursor1 1225s libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 1225s libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 1225s libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki murasaki-common murasaki-mpi 1225s ocl-icd-libopencl1 openmpi-bin openmpi-common r-base-core r-cran-bitops 1225s r-cran-catools r-cran-gdata r-cran-gplots r-cran-gtools r-cran-kernsmooth 1225s r-cran-mass r-cran-rocr rpcsvc-proto ubuntu-mono unzip x11-common xdg-utils 1225s zip zlib1g-dev 1225s Suggested packages: 1225s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-13-locales 1225s cpp-13-doc gcc-13-doc gfortran-13-doc libcoarrays-dev gnuplot-doc 1225s imagemagick-6-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp 1225s grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils 1225s texlive-base-bin transfig libraw-bin bioperl libxml-sax-expatxs-perl 1225s libboost1.83-doc libboost-chrono1.83-dev libboost-container1.83-dev 1225s libboost-context1.83-dev libboost-contract1.83-dev 1225s libboost-coroutine1.83-dev libboost-date-time1.83-dev 1225s libboost-exception1.83-dev libboost-fiber1.83-dev 1225s libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev 1225s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 1225s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 1225s libboost-numpy1.83-dev libboost-program-options1.83-dev 1225s libboost-python1.83-dev libboost-random1.83-dev 1225s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 1225s libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev 1225s libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev 1225s libboost1.83-tools-dev libmpfrc++-dev libntl-dev glibc-doc manpages-dev 1225s colord cups-common libfftw3-bin libfftw3-dev libgd-tools gvfs 1225s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 1225s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 1225s libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs liblcms2-utils 1225s libtool-doc libmagickcore-6.q16-7-extra notification-daemon openmpi-doc 1225s qgnomeplatform-qt5 qt5-image-formats-plugins libstdc++-13-doc tcl8.6 tk8.6 1225s libwacom-bin m4-doc opencl-icd gfortran | fortran-compiler elpa-ess 1225s r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rpart r-cran-knitr 1225s r-cran-rmarkdown 1225s Recommended packages: 1225s librsvg2-common libmagickcore-6.q16-7-extra ghostscript netpbm at-spi2-core 1225s bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl 1225s libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl 1225s libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl 1225s libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl 1225s libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl 1225s libset-scalar-perl libsoap-lite-perl libsort-naturally-perl 1225s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 1225s libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl 1225s libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl 1225s libxml-writer-perl libxml-libxml-perl libwww-perl manpages manpages-dev 1225s libc-devtools perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl 1225s libxml-libxslt-perl libmldbm-perl libxml-perl libgdk-pixbuf2.0-bin 1225s libgl1-amber-dri libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265 1225s javascript-common libtool fonts-urw-base35 libcoarrays-openmpi-dev 1225s qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 mesa-vulkan-drivers 1225s | vulkan-icd r-recommended r-base-dev r-doc-html r-cran-testthat 1225s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 1225s x11-xserver-utils 1229s The following packages will be REMOVED: 1229s libpng16-16 1229s The following NEW packages will be installed: 1229s adwaita-icon-theme aglfn at-spi2-common autoconf automake autopkgtest-satdep 1229s autotools-dev cpp-13-aarch64-linux-gnu dconf-gsettings-backend dconf-service 1229s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13 1229s gcc-13-aarch64-linux-gnu gfortran-13 gfortran-13-aarch64-linux-gnu gnuplot 1229s gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme 1229s humanity-icon-theme icu-devtools imagemagick imagemagick-6-common 1229s imagemagick-6.q16 libamd-comgr2 libamdhip64-5 libasan8 libatk-bridge2.0-0t64 1229s libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 1229s libavahi-common-data libavahi-common3 libbio-perl-perl libblas3 1229s libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-filesystem-dev 1229s libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev 1229s libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex-dev 1229s libboost-regex1.83-dev libboost-regex1.83.0 libboost-system1.83-dev 1229s libboost-system1.83.0 libboost1.83-dev libc-dev-bin libc6-dev 1229s libcairo-gobject2 libcairo2 libcc1-0 libcolord2 libcrypt-dev libcrypto++-dev 1229s libcrypto++8t64 libcups2 libdata-stag-perl libdatrie1 libdav1d7 libdconf1 1229s libde265-0 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 1229s libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev 1229s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 1229s libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-13-dev libgd3 1229s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 1229s libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 1229s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b 1229s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 1229s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 1229s libibverbs-dev libice6 libicu-dev libinput-bin libinput10 libio-string-perl 1229s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 1229s libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 libllvm17 liblqr-1-0 liblsan0 1229s libltdl-dev libltdl7 liblua5.4-0 libmagickcore-6.q16-7 libmagickwand-6.q16-7 1229s libmd4c0 libmpc3 libmtdev1t64 libmunge2 libnl-3-dev libnl-route-3-dev 1229s libnotify4 libnsl-dev libnuma-dev libopenjp2-7 libopenmpi-dev libopenmpi3 1229s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 1229s libpaper1 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 1229s libpmix-dev libpmix2 libpng16-16t64 libpstreams-dev libqt5core5t64 1229s libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 libqt5printsupport5t64 1229s libqt5svg5 libqt5widgets5t64 libraw23 librdmacm1t64 libsharpyuv0 libsm6 1229s libstdc++-13-dev libtcl8.6 libterm-readkey-perl libtext-wrapper-perl 1229s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 1229s libucx0 libvulkan1 libwacom-common libwacom9 libwayland-client0 1229s libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 1229s libwebpmux3 libwxbase3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri2-0 1229s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 1229s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 1229s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 1229s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 libxcursor1 1229s libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 1229s libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 1229s libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki murasaki-common murasaki-mpi 1229s ocl-icd-libopencl1 openmpi-bin openmpi-common r-base-core r-cran-bitops 1229s r-cran-catools r-cran-gdata r-cran-gplots r-cran-gtools r-cran-kernsmooth 1229s r-cran-mass r-cran-rocr rpcsvc-proto ubuntu-mono unzip x11-common xdg-utils 1229s zip zlib1g-dev 1230s 0 upgraded, 256 newly installed, 1 to remove and 0 not upgraded. 1230s Need to get 239 MB/239 MB of archives. 1230s After this operation, 1025 MB of additional disk space will be used. 1230s Get:1 /tmp/autopkgtest.zMX9cF/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [792 B] 1230s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 1231s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 1231s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB] 1231s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 1231s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 1232s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 1232s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 1232s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 1232s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 1232s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 1232s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 1233s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 1233s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 1233s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 1233s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 1233s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 1233s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 1233s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 liblqr-1-0 arm64 0.4.2-2.1 [22.5 kB] 1233s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 1233s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 1233s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libraw23 arm64 0.21.2-2 [381 kB] 1233s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 1233s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 1233s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 1233s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 1233s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 1233s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 1233s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick-6-common all 8:6.9.12.98+dfsg1-5 [69.2 kB] 1234s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 libmagickcore-6.q16-7 arm64 8:6.9.12.98+dfsg1-5 [1714 kB] 1234s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 libmagickwand-6.q16-7 arm64 8:6.9.12.98+dfsg1-5 [276 kB] 1234s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 1234s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 1234s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gtk-update-icon-cache arm64 3.24.41-1.1ubuntu1 [50.9 kB] 1234s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 1234s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 1234s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 1235s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 1235s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 at-spi2-common all 2.51.90-3 [8222 B] 1235s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB] 1235s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] 1235s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] 1235s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 1235s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 1235s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 1235s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 1238s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libdconf1 arm64 0.40.0-4 [39.2 kB] 1239s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-service arm64 0.40.0-4 [26.1 kB] 1239s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-gsettings-backend arm64 0.40.0-4 [21.6 kB] 1239s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 1239s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 1239s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 1239s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 1239s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 1240s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 1241s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 1242s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 1243s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 1244s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 1246s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 1255s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 1255s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 1256s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 1256s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 1256s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 1256s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 1257s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 1257s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 1257s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 1257s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 1258s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 1262s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 1262s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 1262s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gnuplot-data all 6.0.0+dfsg1-1ubuntu2 [75.3 kB] 1262s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 1262s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 1262s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 1262s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 1262s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 1262s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 1262s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libgd3 arm64 2.3.3-9ubuntu1 [119 kB] 1262s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 1262s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 1263s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 1263s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 1263s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 1263s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 1263s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 1263s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 1263s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 1263s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 1263s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 1263s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libqt5core5t64 arm64 5.15.12+dfsg-3ubuntu5 [1971 kB] 1264s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 1264s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-server0 arm64 1.22.0-2.1 [34.0 kB] 1264s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 1264s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libgbm1 arm64 24.0.1-1ubuntu1 [43.0 kB] 1264s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 1264s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-client0 arm64 1.22.0-2.1 [25.6 kB] 1264s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 1264s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 1264s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 1264s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 1264s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 1264s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 1264s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 1264s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libegl-mesa0 arm64 24.0.1-1ubuntu1 [116 kB] 1264s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libegl1 arm64 1.7.0-1 [29.2 kB] 1264s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 1264s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 1264s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 1264s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 1264s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 1264s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 1264s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 1264s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 1274s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 1277s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 1277s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 1277s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 1278s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1278s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 1278s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmtdev1t64 arm64 1.1.6-1.1 [14.3 kB] 1278s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom-common all 2.10.0-1 [63.3 kB] 1278s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom9 arm64 2.10.0-1 [23.7 kB] 1278s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libinput-bin arm64 1.25.0-1 [21.9 kB] 1278s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libinput10 arm64 1.25.0-1 [129 kB] 1278s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libmd4c0 arm64 0.4.8-1 [41.2 kB] 1278s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libqt5dbus5t64 arm64 5.15.12+dfsg-3ubuntu5 [224 kB] 1278s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libqt5network5t64 arm64 5.15.12+dfsg-3ubuntu5 [740 kB] 1278s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 1278s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-icccm4 arm64 0.4.1-1.1build2 [11.0 kB] 1279s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-util1 arm64 0.4.0-1build2 [11.2 kB] 1279s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-image0 arm64 0.4.0-2 [11.1 kB] 1279s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-keysyms1 arm64 0.4.0-1build3 [8606 B] 1279s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render-util0 arm64 0.3.9-1build3 [10.2 kB] 1279s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shape0 arm64 1.15-1 [6106 B] 1279s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinerama0 arm64 1.15-1 [5434 B] 1279s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinput0 arm64 1.15-1 [33.5 kB] 1279s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xkb1 arm64 1.15-1 [31.7 kB] 1279s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1 [13.6 kB] 1279s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libqt5gui5t64 arm64 5.15.12+dfsg-3ubuntu5 [3616 kB] 1280s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 1280s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 1280s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 1280s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 1280s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libqt5widgets5t64 arm64 5.15.12+dfsg-3ubuntu5 [2569 kB] 1281s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libqt5printsupport5t64 arm64 5.15.12+dfsg-3ubuntu5 [210 kB] 1281s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5svg5 arm64 5.15.12-1 [177 kB] 1281s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 1281s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libwxbase3.2-1t64 arm64 3.2.4+dfsg-3.1build1 [860 kB] 1281s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libatk1.0-0t64 arm64 2.51.90-3 [54.7 kB] 1281s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 1282s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libatspi2.0-0t64 arm64 2.51.90-3 [80.4 kB] 1282s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libatk-bridge2.0-0t64 arm64 2.51.90-3 [66.3 kB] 1282s Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo-gobject2 arm64 1.18.0-1 [127 kB] 1282s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libcolord2 arm64 1.4.7-1 [148 kB] 1282s Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 libepoxy0 arm64 1.5.10-1 [247 kB] 1282s Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-cursor0 arm64 1.22.0-2.1 [10.2 kB] 1282s Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-egl1 arm64 1.22.0-2.1 [5498 B] 1282s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 1282s Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 1282s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 1282s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 1282s Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 1282s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgtk-3-common all 3.24.41-1.1ubuntu1 [1201 kB] 1282s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgtk-3-0t64 arm64 3.24.41-1.1ubuntu1 [2867 kB] 1283s Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 libnotify4 arm64 0.8.3-1 [25.3 kB] 1283s Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 1283s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libwxgtk3.2-1t64 arm64 3.2.4+dfsg-3.1build1 [4340 kB] 1284s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gnuplot-qt arm64 6.0.0+dfsg1-1ubuntu2 [1196 kB] 1284s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gnuplot all 6.0.0+dfsg1-1ubuntu2 [3570 B] 1284s Get:173 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 1284s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick-6.q16 arm64 8:6.9.12.98+dfsg1-5 [254 kB] 1284s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick arm64 8:6.9.12.98+dfsg1-5 [14.2 kB] 1284s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 1288s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 1288s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 1288s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 1289s Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 1289s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 libdata-stag-perl all 0.14-3 [372 kB] 1289s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-perl-perl all 1.7.8-1 [2580 kB] 1290s Get:183 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 1290s Get:184 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 1290s Get:185 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 1294s Get:186 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-atomic1.83.0 arm64 1.83.0-2ubuntu1 [316 kB] 1294s Get:187 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-atomic1.83-dev arm64 1.83.0-2ubuntu1 [312 kB] 1295s Get:188 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-2ubuntu1 [366 kB] 1295s Get:189 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-system1.83.0 arm64 1.83.0-2ubuntu1 [312 kB] 1295s Get:190 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-system1.83-dev arm64 1.83.0-2ubuntu1 [308 kB] 1295s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-filesystem1.83-dev arm64 1.83.0-2ubuntu1 [397 kB] 1295s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-filesystem-dev arm64 1.83.0.1ubuntu2 [4094 B] 1295s Get:193 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-regex1.83.0 arm64 1.83.0-2ubuntu1 [423 kB] 1295s Get:194 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 1298s Get:195 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-regex1.83-dev arm64 1.83.0-2ubuntu1 [458 kB] 1298s Get:196 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-2ubuntu1 [339 kB] 1298s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-iostreams1.83-dev arm64 1.83.0-2ubuntu1 [354 kB] 1298s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-iostreams-dev arm64 1.83.0.1ubuntu2 [4046 B] 1298s Get:199 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-regex-dev arm64 1.83.0.1ubuntu2 [4324 B] 1298s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 libcrypto++8t64 arm64 8.9.0-1.1 [1091 kB] 1299s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 libcrypto++-dev arm64 8.9.0-1.1 [2002 kB] 1300s Get:202 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-2.1-7 arm64 2.1.12-stable-9 [138 kB] 1300s Get:203 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-9 [61.3 kB] 1300s Get:204 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 1300s Get:205 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-9 [14.6 kB] 1300s Get:206 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-dev arm64 2.1.12-stable-9 [282 kB] 1300s Get:207 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 1300s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB] 1300s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 1300s Get:210 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1300s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1301s Get:212 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 1301s Get:213 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl-dev arm64 2.4.7-7 [170 kB] 1301s Get:214 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-3-dev arm64 3.7.0-0.3 [105 kB] 1301s Get:215 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-route-3-dev arm64 3.7.0-0.3 [225 kB] 1301s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 1301s Get:217 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 1301s Get:218 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 1301s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 1301s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 1301s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB] 1302s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 1302s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB] 1303s Get:224 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 1303s Get:225 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 1303s Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma-dev arm64 2.0.18-1 [39.5 kB] 1303s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-dev arm64 2.10.0-1 [259 kB] 1303s Get:228 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 1303s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix-dev arm64 5.0.1-4 [4017 kB] 1304s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 libpstreams-dev all 1.0.3-1 [115 kB] 1304s Get:231 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 1305s Get:232 http://ftpmaster.internal/ubuntu noble/main arm64 libterm-readkey-perl arm64 2.38-2build2 [23.1 kB] 1305s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libtext-wrapper-perl all 1.05-4 [9820 B] 1305s Get:234 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 1305s Get:235 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 1305s Get:236 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 1305s Get:237 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 1305s Get:238 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 1305s Get:239 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 1305s Get:240 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 1305s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 1311s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 1312s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 1312s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-catools arm64 1.18.2-1 [200 kB] 1312s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 1312s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 1312s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gdata all 3.0.0-1 [483 kB] 1312s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gplots all 3.1.3.1-1 [589 kB] 1312s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rocr all 1.0-11-2build1 [446 kB] 1312s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 murasaki-common all 1.68.6-13build4 [146 kB] 1312s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 murasaki arm64 1.68.6-13build4 [672 kB] 1312s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 murasaki-mpi arm64 1.68.6-13build4 [790 kB] 1313s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB] 1313s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB] 1313s Get:255 http://ftpmaster.internal/ubuntu noble/main arm64 libibverbs-dev arm64 50.0-2 [686 kB] 1313s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi-dev arm64 4.1.6-5ubuntu1 [1713 kB] 1325s Preconfiguring packages ... 1327s Fetched 239 MB in 1min 24s (2862 kB/s) 1327s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 1327s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 1327s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 1327s 1328s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75864 files and directories currently installed.) 1328s Removing libpng16-16:arm64 (1.6.43-1) ... 1329s Selecting previously unselected package libpng16-16t64:arm64. 1329s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75854 files and directories currently installed.) 1329s Preparing to unpack .../000-libpng16-16t64_1.6.43-3_arm64.deb ... 1329s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 1330s Selecting previously unselected package libgomp1:arm64. 1330s Preparing to unpack .../001-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 1330s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 1330s Selecting previously unselected package libfftw3-double3:arm64. 1330s Preparing to unpack .../002-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ... 1330s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 1331s Selecting previously unselected package fonts-dejavu-mono. 1331s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ... 1331s Unpacking fonts-dejavu-mono (2.37-8) ... 1332s Selecting previously unselected package fonts-dejavu-core. 1332s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ... 1332s Unpacking fonts-dejavu-core (2.37-8) ... 1333s Selecting previously unselected package fontconfig-config. 1333s Preparing to unpack .../005-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 1337s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1338s Selecting previously unselected package libfontconfig1:arm64. 1338s Preparing to unpack .../006-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 1338s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1338s Selecting previously unselected package libsharpyuv0:arm64. 1339s Preparing to unpack .../007-libsharpyuv0_1.3.2-0.4_arm64.deb ... 1339s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 1339s Selecting previously unselected package libdav1d7:arm64. 1339s Preparing to unpack .../008-libdav1d7_1.4.0-1_arm64.deb ... 1339s Unpacking libdav1d7:arm64 (1.4.0-1) ... 1340s Selecting previously unselected package libheif-plugin-dav1d:arm64. 1340s Preparing to unpack .../009-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 1340s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 1340s Selecting previously unselected package libde265-0:arm64. 1340s Preparing to unpack .../010-libde265-0_1.0.15-1_arm64.deb ... 1340s Unpacking libde265-0:arm64 (1.0.15-1) ... 1341s Selecting previously unselected package libheif-plugin-libde265:arm64. 1341s Preparing to unpack .../011-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 1341s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 1341s Selecting previously unselected package libheif1:arm64. 1342s Preparing to unpack .../012-libheif1_1.17.6-1ubuntu1_arm64.deb ... 1342s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 1342s Selecting previously unselected package libjbig0:arm64. 1342s Preparing to unpack .../013-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 1342s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 1343s Selecting previously unselected package libjpeg-turbo8:arm64. 1343s Preparing to unpack .../014-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 1343s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1343s Selecting previously unselected package libjpeg8:arm64. 1343s Preparing to unpack .../015-libjpeg8_8c-2ubuntu11_arm64.deb ... 1343s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1344s Selecting previously unselected package liblcms2-2:arm64. 1344s Preparing to unpack .../016-liblcms2-2_2.14-2_arm64.deb ... 1344s Unpacking liblcms2-2:arm64 (2.14-2) ... 1345s Selecting previously unselected package liblqr-1-0:arm64. 1345s Preparing to unpack .../017-liblqr-1-0_0.4.2-2.1_arm64.deb ... 1345s Unpacking liblqr-1-0:arm64 (0.4.2-2.1) ... 1345s Selecting previously unselected package libltdl7:arm64. 1346s Preparing to unpack .../018-libltdl7_2.4.7-7_arm64.deb ... 1346s Unpacking libltdl7:arm64 (2.4.7-7) ... 1346s Selecting previously unselected package libopenjp2-7:arm64. 1346s Preparing to unpack .../019-libopenjp2-7_2.5.0-2_arm64.deb ... 1346s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 1347s Selecting previously unselected package libraw23:arm64. 1347s Preparing to unpack .../020-libraw23_0.21.2-2_arm64.deb ... 1347s Unpacking libraw23:arm64 (0.21.2-2) ... 1348s Selecting previously unselected package libdeflate0:arm64. 1348s Preparing to unpack .../021-libdeflate0_1.19-1_arm64.deb ... 1348s Unpacking libdeflate0:arm64 (1.19-1) ... 1349s Selecting previously unselected package liblerc4:arm64. 1349s Preparing to unpack .../022-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 1349s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1349s Selecting previously unselected package libwebp7:arm64. 1350s Preparing to unpack .../023-libwebp7_1.3.2-0.4_arm64.deb ... 1350s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 1351s Selecting previously unselected package libtiff6:arm64. 1351s Preparing to unpack .../024-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 1351s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1351s Selecting previously unselected package libwebpdemux2:arm64. 1351s Preparing to unpack .../025-libwebpdemux2_1.3.2-0.4_arm64.deb ... 1351s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ... 1352s Selecting previously unselected package libwebpmux3:arm64. 1352s Preparing to unpack .../026-libwebpmux3_1.3.2-0.4_arm64.deb ... 1352s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ... 1353s Selecting previously unselected package imagemagick-6-common. 1353s Preparing to unpack .../027-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5_all.deb ... 1353s Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 1354s Selecting previously unselected package libmagickcore-6.q16-7:arm64. 1354s Preparing to unpack .../028-libmagickcore-6.q16-7_8%3a6.9.12.98+dfsg1-5_arm64.deb ... 1354s Unpacking libmagickcore-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ... 1357s Selecting previously unselected package libmagickwand-6.q16-7:arm64. 1357s Preparing to unpack .../029-libmagickwand-6.q16-7_8%3a6.9.12.98+dfsg1-5_arm64.deb ... 1357s Unpacking libmagickwand-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ... 1357s Selecting previously unselected package libgdk-pixbuf2.0-common. 1357s Preparing to unpack .../030-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 1358s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 1358s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 1358s Preparing to unpack .../031-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 1358s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 1360s Selecting previously unselected package gtk-update-icon-cache. 1361s Preparing to unpack .../032-gtk-update-icon-cache_3.24.41-1.1ubuntu1_arm64.deb ... 1361s Unpacking gtk-update-icon-cache (3.24.41-1.1ubuntu1) ... 1361s Selecting previously unselected package hicolor-icon-theme. 1361s Preparing to unpack .../033-hicolor-icon-theme_0.17-2_all.deb ... 1361s Unpacking hicolor-icon-theme (0.17-2) ... 1364s Selecting previously unselected package humanity-icon-theme. 1364s Preparing to unpack .../034-humanity-icon-theme_0.6.16_all.deb ... 1364s Unpacking humanity-icon-theme (0.6.16) ... 1399s Selecting previously unselected package ubuntu-mono. 1399s Preparing to unpack .../035-ubuntu-mono_24.04-0ubuntu1_all.deb ... 1399s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 1416s Selecting previously unselected package adwaita-icon-theme. 1416s Preparing to unpack .../036-adwaita-icon-theme_46~rc-1_all.deb ... 1416s Unpacking adwaita-icon-theme (46~rc-1) ... 1424s Selecting previously unselected package at-spi2-common. 1425s Preparing to unpack .../037-at-spi2-common_2.51.90-3_all.deb ... 1425s Unpacking at-spi2-common (2.51.90-3) ... 1426s Selecting previously unselected package m4. 1426s Preparing to unpack .../038-m4_1.4.19-4_arm64.deb ... 1426s Unpacking m4 (1.4.19-4) ... 1428s Selecting previously unselected package autoconf. 1428s Preparing to unpack .../039-autoconf_2.71-3_all.deb ... 1428s Unpacking autoconf (2.71-3) ... 1430s Selecting previously unselected package autotools-dev. 1431s Preparing to unpack .../040-autotools-dev_20220109.1_all.deb ... 1431s Unpacking autotools-dev (20220109.1) ... 1432s Selecting previously unselected package automake. 1432s Preparing to unpack .../041-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 1433s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 1435s Selecting previously unselected package libisl23:arm64. 1436s Preparing to unpack .../042-libisl23_0.26-3_arm64.deb ... 1436s Unpacking libisl23:arm64 (0.26-3) ... 1437s Selecting previously unselected package libmpc3:arm64. 1438s Preparing to unpack .../043-libmpc3_1.3.1-1_arm64.deb ... 1438s Unpacking libmpc3:arm64 (1.3.1-1) ... 1438s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 1438s Preparing to unpack .../044-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 1438s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1449s Selecting previously unselected package libdconf1:arm64. 1449s Preparing to unpack .../045-libdconf1_0.40.0-4_arm64.deb ... 1449s Unpacking libdconf1:arm64 (0.40.0-4) ... 1449s Selecting previously unselected package dconf-service. 1449s Preparing to unpack .../046-dconf-service_0.40.0-4_arm64.deb ... 1449s Unpacking dconf-service (0.40.0-4) ... 1450s Selecting previously unselected package dconf-gsettings-backend:arm64. 1450s Preparing to unpack .../047-dconf-gsettings-backend_0.40.0-4_arm64.deb ... 1450s Unpacking dconf-gsettings-backend:arm64 (0.40.0-4) ... 1450s Selecting previously unselected package fontconfig. 1451s Preparing to unpack .../048-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 1451s Unpacking fontconfig (2.15.0-1ubuntu1) ... 1451s Selecting previously unselected package libcc1-0:arm64. 1451s Preparing to unpack .../049-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 1451s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 1452s Selecting previously unselected package libitm1:arm64. 1453s Preparing to unpack .../050-libitm1_14-20240303-1ubuntu1_arm64.deb ... 1453s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 1453s Selecting previously unselected package libatomic1:arm64. 1453s Preparing to unpack .../051-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 1453s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 1454s Selecting previously unselected package libasan8:arm64. 1454s Preparing to unpack .../052-libasan8_14-20240303-1ubuntu1_arm64.deb ... 1454s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 1456s Selecting previously unselected package liblsan0:arm64. 1456s Preparing to unpack .../053-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 1456s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 1457s Selecting previously unselected package libtsan2:arm64. 1457s Preparing to unpack .../054-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 1457s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 1459s Selecting previously unselected package libubsan1:arm64. 1459s Preparing to unpack .../055-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 1459s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 1461s Selecting previously unselected package libhwasan0:arm64. 1461s Preparing to unpack .../056-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 1461s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 1462s Selecting previously unselected package libgcc-13-dev:arm64. 1462s Preparing to unpack .../057-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 1462s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 1465s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 1465s Preparing to unpack .../058-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 1465s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1476s Selecting previously unselected package gcc-13. 1476s Preparing to unpack .../059-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 1476s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 1476s Selecting previously unselected package libgfortran5:arm64. 1476s Preparing to unpack .../060-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 1476s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 1477s Selecting previously unselected package libgfortran-13-dev:arm64. 1477s Preparing to unpack .../061-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 1477s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 1478s Selecting previously unselected package libc-dev-bin. 1478s Preparing to unpack .../062-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 1478s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 1478s Selecting previously unselected package linux-libc-dev:arm64. 1478s Preparing to unpack .../063-linux-libc-dev_6.8.0-11.11_arm64.deb ... 1478s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 1482s Selecting previously unselected package libcrypt-dev:arm64. 1483s Preparing to unpack .../064-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 1483s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 1483s Selecting previously unselected package libtirpc-dev:arm64. 1483s Preparing to unpack .../065-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 1483s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 1484s Selecting previously unselected package libnsl-dev:arm64. 1484s Preparing to unpack .../066-libnsl-dev_1.3.0-3_arm64.deb ... 1484s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 1485s Selecting previously unselected package rpcsvc-proto. 1485s Preparing to unpack .../067-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 1485s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1486s Selecting previously unselected package libc6-dev:arm64. 1486s Preparing to unpack .../068-libc6-dev_2.39-0ubuntu2_arm64.deb ... 1486s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 1489s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 1489s Preparing to unpack .../069-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 1489s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1494s Selecting previously unselected package gfortran-13. 1494s Preparing to unpack .../070-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 1494s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 1494s Selecting previously unselected package aglfn. 1495s Preparing to unpack .../071-aglfn_1.7+git20191031.4036a9c-2_all.deb ... 1495s Unpacking aglfn (1.7+git20191031.4036a9c-2) ... 1495s Selecting previously unselected package gnuplot-data. 1495s Preparing to unpack .../072-gnuplot-data_6.0.0+dfsg1-1ubuntu2_all.deb ... 1495s Unpacking gnuplot-data (6.0.0+dfsg1-1ubuntu2) ... 1496s Selecting previously unselected package libpixman-1-0:arm64. 1496s Preparing to unpack .../073-libpixman-1-0_0.42.2-1_arm64.deb ... 1496s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 1496s Selecting previously unselected package libxcb-render0:arm64. 1497s Preparing to unpack .../074-libxcb-render0_1.15-1_arm64.deb ... 1497s Unpacking libxcb-render0:arm64 (1.15-1) ... 1497s Selecting previously unselected package libxcb-shm0:arm64. 1497s Preparing to unpack .../075-libxcb-shm0_1.15-1_arm64.deb ... 1497s Unpacking libxcb-shm0:arm64 (1.15-1) ... 1498s Selecting previously unselected package libxrender1:arm64. 1498s Preparing to unpack .../076-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 1498s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 1498s Selecting previously unselected package libcairo2:arm64. 1498s Preparing to unpack .../077-libcairo2_1.18.0-1_arm64.deb ... 1498s Unpacking libcairo2:arm64 (1.18.0-1) ... 1499s Selecting previously unselected package libxpm4:arm64. 1499s Preparing to unpack .../078-libxpm4_1%3a3.5.17-1_arm64.deb ... 1499s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 1500s Selecting previously unselected package libgd3:arm64. 1500s Preparing to unpack .../079-libgd3_2.3.3-9ubuntu1_arm64.deb ... 1500s Unpacking libgd3:arm64 (2.3.3-9ubuntu1) ... 1500s Selecting previously unselected package liblua5.4-0:arm64. 1500s Preparing to unpack .../080-liblua5.4-0_5.4.6-3_arm64.deb ... 1500s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 1501s Selecting previously unselected package libgraphite2-3:arm64. 1501s Preparing to unpack .../081-libgraphite2-3_1.3.14-2_arm64.deb ... 1501s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 1502s Selecting previously unselected package libharfbuzz0b:arm64. 1502s Preparing to unpack .../082-libharfbuzz0b_8.3.0-2_arm64.deb ... 1502s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 1503s Selecting previously unselected package libthai-data. 1503s Preparing to unpack .../083-libthai-data_0.1.29-2_all.deb ... 1503s Unpacking libthai-data (0.1.29-2) ... 1503s Selecting previously unselected package libdatrie1:arm64. 1503s Preparing to unpack .../084-libdatrie1_0.2.13-3_arm64.deb ... 1503s Unpacking libdatrie1:arm64 (0.2.13-3) ... 1504s Selecting previously unselected package libthai0:arm64. 1504s Preparing to unpack .../085-libthai0_0.1.29-2_arm64.deb ... 1504s Unpacking libthai0:arm64 (0.1.29-2) ... 1504s Selecting previously unselected package libpango-1.0-0:arm64. 1505s Preparing to unpack .../086-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 1505s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1505s Selecting previously unselected package libpangoft2-1.0-0:arm64. 1505s Preparing to unpack .../087-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 1505s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 1506s Selecting previously unselected package libpangocairo-1.0-0:arm64. 1506s Preparing to unpack .../088-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 1506s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 1508s Selecting previously unselected package libdouble-conversion3:arm64. 1508s Preparing to unpack .../089-libdouble-conversion3_3.3.0-1_arm64.deb ... 1508s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 1508s Selecting previously unselected package libpcre2-16-0:arm64. 1508s Preparing to unpack .../090-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 1508s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 1508s Selecting previously unselected package libqt5core5t64:arm64. 1508s Preparing to unpack .../091-libqt5core5t64_5.15.12+dfsg-3ubuntu5_arm64.deb ... 1508s Unpacking libqt5core5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1509s Selecting previously unselected package libglvnd0:arm64. 1509s Preparing to unpack .../092-libglvnd0_1.7.0-1_arm64.deb ... 1509s Unpacking libglvnd0:arm64 (1.7.0-1) ... 1510s Selecting previously unselected package libwayland-server0:arm64. 1510s Preparing to unpack .../093-libwayland-server0_1.22.0-2.1_arm64.deb ... 1510s Unpacking libwayland-server0:arm64 (1.22.0-2.1) ... 1510s Selecting previously unselected package libxcb-randr0:arm64. 1510s Preparing to unpack .../094-libxcb-randr0_1.15-1_arm64.deb ... 1510s Unpacking libxcb-randr0:arm64 (1.15-1) ... 1511s Selecting previously unselected package libgbm1:arm64. 1511s Preparing to unpack .../095-libgbm1_24.0.1-1ubuntu1_arm64.deb ... 1511s Unpacking libgbm1:arm64 (24.0.1-1ubuntu1) ... 1512s Selecting previously unselected package libglapi-mesa:arm64. 1512s Preparing to unpack .../096-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 1512s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1513s Selecting previously unselected package libwayland-client0:arm64. 1514s Preparing to unpack .../097-libwayland-client0_1.22.0-2.1_arm64.deb ... 1514s Unpacking libwayland-client0:arm64 (1.22.0-2.1) ... 1514s Selecting previously unselected package libx11-xcb1:arm64. 1514s Preparing to unpack .../098-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 1514s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 1515s Selecting previously unselected package libxcb-dri2-0:arm64. 1515s Preparing to unpack .../099-libxcb-dri2-0_1.15-1_arm64.deb ... 1515s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 1515s Selecting previously unselected package libxcb-dri3-0:arm64. 1516s Preparing to unpack .../100-libxcb-dri3-0_1.15-1_arm64.deb ... 1516s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 1516s Selecting previously unselected package libxcb-present0:arm64. 1516s Preparing to unpack .../101-libxcb-present0_1.15-1_arm64.deb ... 1516s Unpacking libxcb-present0:arm64 (1.15-1) ... 1517s Selecting previously unselected package libxcb-sync1:arm64. 1517s Preparing to unpack .../102-libxcb-sync1_1.15-1_arm64.deb ... 1517s Unpacking libxcb-sync1:arm64 (1.15-1) ... 1518s Selecting previously unselected package libxcb-xfixes0:arm64. 1518s Preparing to unpack .../103-libxcb-xfixes0_1.15-1_arm64.deb ... 1518s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 1518s Selecting previously unselected package libxshmfence1:arm64. 1518s Preparing to unpack .../104-libxshmfence1_1.3-1build4_arm64.deb ... 1518s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 1520s Selecting previously unselected package libegl-mesa0:arm64. 1520s Preparing to unpack .../105-libegl-mesa0_24.0.1-1ubuntu1_arm64.deb ... 1520s Unpacking libegl-mesa0:arm64 (24.0.1-1ubuntu1) ... 1521s Selecting previously unselected package libegl1:arm64. 1521s Preparing to unpack .../106-libegl1_1.7.0-1_arm64.deb ... 1521s Unpacking libegl1:arm64 (1.7.0-1) ... 1521s Selecting previously unselected package libxcb-glx0:arm64. 1522s Preparing to unpack .../107-libxcb-glx0_1.15-1_arm64.deb ... 1522s Unpacking libxcb-glx0:arm64 (1.15-1) ... 1522s Selecting previously unselected package libxfixes3:arm64. 1523s Preparing to unpack .../108-libxfixes3_1%3a6.0.0-2_arm64.deb ... 1523s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 1523s Selecting previously unselected package libxxf86vm1:arm64. 1523s Preparing to unpack .../109-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 1523s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1524s Selecting previously unselected package libvulkan1:arm64. 1524s Preparing to unpack .../110-libvulkan1_1.3.275.0-1_arm64.deb ... 1524s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 1525s Selecting previously unselected package libdrm-amdgpu1:arm64. 1525s Preparing to unpack .../111-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 1525s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 1526s Selecting previously unselected package libdrm-nouveau2:arm64. 1526s Preparing to unpack .../112-libdrm-nouveau2_2.4.120-2_arm64.deb ... 1526s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 1527s Selecting previously unselected package libdrm-radeon1:arm64. 1527s Preparing to unpack .../113-libdrm-radeon1_2.4.120-2_arm64.deb ... 1527s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 1527s Selecting previously unselected package libllvm17:arm64. 1528s Preparing to unpack .../114-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 1528s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 1543s Selecting previously unselected package libgl1-mesa-dri:arm64. 1543s Preparing to unpack .../115-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 1543s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1552s Selecting previously unselected package libglx-mesa0:arm64. 1552s Preparing to unpack .../116-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 1552s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1553s Selecting previously unselected package libglx0:arm64. 1553s Preparing to unpack .../117-libglx0_1.7.0-1_arm64.deb ... 1554s Unpacking libglx0:arm64 (1.7.0-1) ... 1554s Selecting previously unselected package libgl1:arm64. 1554s Preparing to unpack .../118-libgl1_1.7.0-1_arm64.deb ... 1554s Unpacking libgl1:arm64 (1.7.0-1) ... 1555s Selecting previously unselected package x11-common. 1556s Preparing to unpack .../119-x11-common_1%3a7.7+23ubuntu2_all.deb ... 1556s Unpacking x11-common (1:7.7+23ubuntu2) ... 1556s Selecting previously unselected package libice6:arm64. 1556s Preparing to unpack .../120-libice6_2%3a1.0.10-1build2_arm64.deb ... 1556s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 1557s Selecting previously unselected package libmtdev1t64:arm64. 1557s Preparing to unpack .../121-libmtdev1t64_1.1.6-1.1_arm64.deb ... 1557s Unpacking libmtdev1t64:arm64 (1.1.6-1.1) ... 1558s Selecting previously unselected package libwacom-common. 1558s Preparing to unpack .../122-libwacom-common_2.10.0-1_all.deb ... 1558s Unpacking libwacom-common (2.10.0-1) ... 1560s Selecting previously unselected package libwacom9:arm64. 1560s Preparing to unpack .../123-libwacom9_2.10.0-1_arm64.deb ... 1560s Unpacking libwacom9:arm64 (2.10.0-1) ... 1561s Selecting previously unselected package libinput-bin. 1561s Preparing to unpack .../124-libinput-bin_1.25.0-1_arm64.deb ... 1561s Unpacking libinput-bin (1.25.0-1) ... 1561s Selecting previously unselected package libinput10:arm64. 1562s Preparing to unpack .../125-libinput10_1.25.0-1_arm64.deb ... 1562s Unpacking libinput10:arm64 (1.25.0-1) ... 1562s Selecting previously unselected package libmd4c0:arm64. 1562s Preparing to unpack .../126-libmd4c0_0.4.8-1_arm64.deb ... 1562s Unpacking libmd4c0:arm64 (0.4.8-1) ... 1563s Selecting previously unselected package libqt5dbus5t64:arm64. 1563s Preparing to unpack .../127-libqt5dbus5t64_5.15.12+dfsg-3ubuntu5_arm64.deb ... 1563s Unpacking libqt5dbus5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1563s Selecting previously unselected package libqt5network5t64:arm64. 1563s Preparing to unpack .../128-libqt5network5t64_5.15.12+dfsg-3ubuntu5_arm64.deb ... 1564s Unpacking libqt5network5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1564s Selecting previously unselected package libsm6:arm64. 1564s Preparing to unpack .../129-libsm6_2%3a1.2.3-1build2_arm64.deb ... 1564s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 1565s Selecting previously unselected package libxcb-icccm4:arm64. 1565s Preparing to unpack .../130-libxcb-icccm4_0.4.1-1.1build2_arm64.deb ... 1565s Unpacking libxcb-icccm4:arm64 (0.4.1-1.1build2) ... 1565s Selecting previously unselected package libxcb-util1:arm64. 1566s 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unpack .../141-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 1573s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 1574s Selecting previously unselected package libavahi-common3:arm64. 1574s Preparing to unpack .../142-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 1574s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 1574s Selecting previously unselected package libavahi-client3:arm64. 1575s Preparing to unpack .../143-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 1575s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 1575s Selecting previously unselected package libcups2:arm64. 1575s Preparing to unpack .../144-libcups2_2.4.6-0ubuntu3_arm64.deb ... 1575s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 1576s Selecting previously unselected package libqt5widgets5t64:arm64. 1576s Preparing to unpack .../145-libqt5widgets5t64_5.15.12+dfsg-3ubuntu5_arm64.deb ... 1576s Unpacking libqt5widgets5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1578s Selecting previously unselected package libqt5printsupport5t64:arm64. 1578s Preparing to unpack .../146-libqt5printsupport5t64_5.15.12+dfsg-3ubuntu5_arm64.deb ... 1578s Unpacking libqt5printsupport5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1578s Selecting previously unselected package libqt5svg5:arm64. 1578s Preparing to unpack .../147-libqt5svg5_5.15.12-1_arm64.deb ... 1579s Unpacking libqt5svg5:arm64 (5.15.12-1) ... 1579s Selecting previously unselected package libpcre2-32-0:arm64. 1579s Preparing to unpack .../148-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 1579s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 1580s Selecting previously unselected package libwxbase3.2-1t64:arm64. 1580s Preparing to unpack .../149-libwxbase3.2-1t64_3.2.4+dfsg-3.1build1_arm64.deb ... 1580s Unpacking libwxbase3.2-1t64:arm64 (3.2.4+dfsg-3.1build1) ... 1581s Selecting previously unselected package libatk1.0-0t64:arm64. 1581s Preparing to unpack .../150-libatk1.0-0t64_2.51.90-3_arm64.deb ... 1581s Unpacking libatk1.0-0t64:arm64 (2.51.90-3) ... 1581s Selecting previously unselected package libxi6:arm64. 1582s Preparing to unpack .../151-libxi6_2%3a1.8.1-1_arm64.deb ... 1582s Unpacking libxi6:arm64 (2:1.8.1-1) ... 1582s Selecting previously unselected package libatspi2.0-0t64:arm64. 1582s Preparing to unpack .../152-libatspi2.0-0t64_2.51.90-3_arm64.deb ... 1582s Unpacking libatspi2.0-0t64:arm64 (2.51.90-3) ... 1583s Selecting previously unselected package libatk-bridge2.0-0t64:arm64. 1583s Preparing to unpack .../153-libatk-bridge2.0-0t64_2.51.90-3_arm64.deb ... 1583s Unpacking libatk-bridge2.0-0t64:arm64 (2.51.90-3) ... 1583s Selecting previously unselected package libcairo-gobject2:arm64. 1583s Preparing to unpack .../154-libcairo-gobject2_1.18.0-1_arm64.deb ... 1583s Unpacking libcairo-gobject2:arm64 (1.18.0-1) ... 1584s Selecting previously unselected package libcolord2:arm64. 1584s Preparing to unpack .../155-libcolord2_1.4.7-1_arm64.deb ... 1584s Unpacking libcolord2:arm64 (1.4.7-1) ... 1585s Selecting previously unselected package libepoxy0:arm64. 1585s Preparing to unpack .../156-libepoxy0_1.5.10-1_arm64.deb ... 1585s Unpacking libepoxy0:arm64 (1.5.10-1) ... 1586s Selecting previously unselected package libwayland-cursor0:arm64. 1586s Preparing to unpack .../157-libwayland-cursor0_1.22.0-2.1_arm64.deb ... 1586s Unpacking libwayland-cursor0:arm64 (1.22.0-2.1) ... 1586s Selecting previously unselected package libwayland-egl1:arm64. 1586s Preparing to unpack .../158-libwayland-egl1_1.22.0-2.1_arm64.deb ... 1586s Unpacking libwayland-egl1:arm64 (1.22.0-2.1) ... 1587s Selecting previously unselected package libxcomposite1:arm64. 1587s Preparing to unpack .../159-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 1587s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 1588s Selecting previously unselected package libxcursor1:arm64. 1588s Preparing to unpack .../160-libxcursor1_1%3a1.2.1-1_arm64.deb ... 1588s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 1588s Selecting previously unselected package libxdamage1:arm64. 1588s Preparing to unpack .../161-libxdamage1_1%3a1.1.6-1_arm64.deb ... 1588s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 1589s Selecting previously unselected package libxinerama1:arm64. 1589s Preparing to unpack .../162-libxinerama1_2%3a1.1.4-3_arm64.deb ... 1589s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 1590s Selecting previously unselected package libxrandr2:arm64. 1590s Preparing to unpack .../163-libxrandr2_2%3a1.5.2-2_arm64.deb ... 1590s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 1590s Selecting previously unselected package libgtk-3-common. 1590s Preparing to unpack .../164-libgtk-3-common_3.24.41-1.1ubuntu1_all.deb ... 1590s Unpacking libgtk-3-common (3.24.41-1.1ubuntu1) ... 1591s Selecting previously unselected package libgtk-3-0t64:arm64. 1592s Preparing to unpack .../165-libgtk-3-0t64_3.24.41-1.1ubuntu1_arm64.deb ... 1592s Unpacking libgtk-3-0t64:arm64 (3.24.41-1.1ubuntu1) ... 1594s Selecting previously unselected package libnotify4:arm64. 1594s Preparing to unpack .../166-libnotify4_0.8.3-1_arm64.deb ... 1594s Unpacking libnotify4:arm64 (0.8.3-1) ... 1595s Selecting previously unselected package libxtst6:arm64. 1595s Preparing to unpack .../167-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 1595s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 1595s Selecting previously unselected package libwxgtk3.2-1t64:arm64. 1595s Preparing to unpack .../168-libwxgtk3.2-1t64_3.2.4+dfsg-3.1build1_arm64.deb ... 1595s Unpacking libwxgtk3.2-1t64:arm64 (3.2.4+dfsg-3.1build1) ... 1598s Selecting previously unselected package gnuplot-qt. 1599s Preparing to unpack .../169-gnuplot-qt_6.0.0+dfsg1-1ubuntu2_arm64.deb ... 1599s Unpacking gnuplot-qt (6.0.0+dfsg1-1ubuntu2) ... 1600s Selecting previously unselected package gnuplot. 1600s Preparing to unpack .../170-gnuplot_6.0.0+dfsg1-1ubuntu2_all.deb ... 1600s Unpacking gnuplot (6.0.0+dfsg1-1ubuntu2) ... 1600s Selecting previously unselected package icu-devtools. 1601s Preparing to unpack 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to unpack .../176-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 1614s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 1615s Selecting previously unselected package libamdhip64-5. 1616s Preparing to unpack .../177-libamdhip64-5_5.2.3-12_arm64.deb ... 1616s Unpacking libamdhip64-5 (5.2.3-12) ... 1619s Selecting previously unselected package libio-string-perl. 1619s Preparing to unpack .../178-libio-string-perl_1.08-4_all.deb ... 1619s Unpacking libio-string-perl (1.08-4) ... 1619s Selecting previously unselected package libdata-stag-perl. 1620s Preparing to unpack .../179-libdata-stag-perl_0.14-3_all.deb ... 1620s Unpacking libdata-stag-perl (0.14-3) ... 1621s Selecting previously unselected package libbio-perl-perl. 1621s Preparing to unpack .../180-libbio-perl-perl_1.7.8-1_all.deb ... 1621s Unpacking libbio-perl-perl (1.7.8-1) ... 1626s Selecting previously unselected package libblas3:arm64. 1626s Preparing to unpack .../181-libblas3_3.12.0-3_arm64.deb ... 1626s Unpacking libblas3:arm64 (3.12.0-3) ... 1626s Selecting previously unselected package libstdc++-13-dev:arm64. 1627s Preparing to unpack .../182-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 1627s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 1634s Selecting previously unselected package libboost1.83-dev:arm64. 1634s Preparing to unpack .../183-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 1634s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1726s Selecting previously unselected package libboost-atomic1.83.0:arm64. 1726s Preparing to unpack .../184-libboost-atomic1.83.0_1.83.0-2ubuntu1_arm64.deb ... 1726s Unpacking libboost-atomic1.83.0:arm64 (1.83.0-2ubuntu1) ... 1727s Selecting previously unselected package libboost-atomic1.83-dev:arm64. 1727s Preparing to unpack .../185-libboost-atomic1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 1727s Unpacking libboost-atomic1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1728s Selecting previously unselected package libboost-filesystem1.83.0:arm64. 1728s Preparing to unpack .../186-libboost-filesystem1.83.0_1.83.0-2ubuntu1_arm64.deb ... 1728s Unpacking libboost-filesystem1.83.0:arm64 (1.83.0-2ubuntu1) ... 1729s Selecting previously unselected package libboost-system1.83.0:arm64. 1730s Preparing to unpack .../187-libboost-system1.83.0_1.83.0-2ubuntu1_arm64.deb ... 1730s Unpacking libboost-system1.83.0:arm64 (1.83.0-2ubuntu1) ... 1731s Selecting previously unselected package libboost-system1.83-dev:arm64. 1731s Preparing to unpack .../188-libboost-system1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 1731s Unpacking libboost-system1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1731s Selecting previously unselected package libboost-filesystem1.83-dev:arm64. 1732s Preparing to unpack .../189-libboost-filesystem1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 1732s Unpacking libboost-filesystem1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1732s Selecting previously unselected package libboost-filesystem-dev:arm64. 1733s Preparing to unpack .../190-libboost-filesystem-dev_1.83.0.1ubuntu2_arm64.deb ... 1733s Unpacking libboost-filesystem-dev:arm64 (1.83.0.1ubuntu2) ... 1733s Selecting previously unselected package libboost-regex1.83.0:arm64. 1733s Preparing to unpack .../191-libboost-regex1.83.0_1.83.0-2ubuntu1_arm64.deb ... 1733s Unpacking libboost-regex1.83.0:arm64 (1.83.0-2ubuntu1) ... 1734s Selecting previously unselected package libicu-dev:arm64. 1734s Preparing to unpack .../192-libicu-dev_74.2-1ubuntu1_arm64.deb ... 1734s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 1745s Selecting previously unselected package libboost-regex1.83-dev:arm64. 1746s Preparing to unpack .../193-libboost-regex1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 1746s Unpacking libboost-regex1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1746s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 1746s Preparing to unpack .../194-libboost-iostreams1.83.0_1.83.0-2ubuntu1_arm64.deb ... 1746s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-2ubuntu1) ... 1747s Selecting previously unselected package libboost-iostreams1.83-dev:arm64. 1748s Preparing to unpack .../195-libboost-iostreams1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 1748s Unpacking libboost-iostreams1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1748s Selecting previously unselected package libboost-iostreams-dev:arm64. 1749s Preparing to unpack .../196-libboost-iostreams-dev_1.83.0.1ubuntu2_arm64.deb ... 1749s Unpacking libboost-iostreams-dev:arm64 (1.83.0.1ubuntu2) ... 1749s Selecting previously unselected package libboost-regex-dev:arm64. 1749s Preparing to unpack .../197-libboost-regex-dev_1.83.0.1ubuntu2_arm64.deb ... 1749s Unpacking libboost-regex-dev:arm64 (1.83.0.1ubuntu2) ... 1750s Selecting previously unselected package libcrypto++8t64:arm64. 1750s Preparing to unpack .../198-libcrypto++8t64_8.9.0-1.1_arm64.deb ... 1750s Unpacking libcrypto++8t64:arm64 (8.9.0-1.1) ... 1751s Selecting previously unselected package libcrypto++-dev:arm64. 1751s Preparing to unpack .../199-libcrypto++-dev_8.9.0-1.1_arm64.deb ... 1751s Unpacking libcrypto++-dev:arm64 (8.9.0-1.1) ... 1754s Selecting previously unselected package libevent-2.1-7:arm64. 1754s Preparing to unpack .../200-libevent-2.1-7_2.1.12-stable-9_arm64.deb ... 1754s Unpacking libevent-2.1-7:arm64 (2.1.12-stable-9) ... 1755s Selecting previously unselected package libevent-extra-2.1-7:arm64. 1755s Preparing to unpack .../201-libevent-extra-2.1-7_2.1.12-stable-9_arm64.deb ... 1755s Unpacking libevent-extra-2.1-7:arm64 (2.1.12-stable-9) ... 1756s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 1756s Preparing to unpack .../202-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 1756s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 1757s Selecting previously unselected package libevent-openssl-2.1-7:arm64. 1757s Preparing to unpack .../203-libevent-openssl-2.1-7_2.1.12-stable-9_arm64.deb ... 1757s Unpacking libevent-openssl-2.1-7:arm64 (2.1.12-stable-9) ... 1757s Selecting previously unselected package libevent-dev. 1757s Preparing to unpack .../204-libevent-dev_2.1.12-stable-9_arm64.deb ... 1757s Unpacking libevent-dev (2.1.12-stable-9) ... 1759s Selecting previously unselected package librdmacm1t64:arm64. 1759s Preparing to unpack .../205-librdmacm1t64_50.0-2_arm64.deb ... 1759s Unpacking librdmacm1t64:arm64 (50.0-2) ... 1759s Selecting previously unselected package libfabric1:arm64. 1760s Preparing to unpack .../206-libfabric1_1.17.0-3_arm64.deb ... 1760s Unpacking libfabric1:arm64 (1.17.0-3) ... 1760s Selecting previously unselected package libhwloc15:arm64. 1760s Preparing to unpack .../207-libhwloc15_2.10.0-1_arm64.deb ... 1760s Unpacking libhwloc15:arm64 (2.10.0-1) ... 1761s Selecting previously unselected package libjs-jquery. 1761s Preparing to unpack .../208-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1761s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1762s Selecting previously unselected package libjs-jquery-ui. 1762s Preparing to unpack .../209-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1762s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1764s Selecting previously unselected package liblapack3:arm64. 1764s Preparing to unpack .../210-liblapack3_3.12.0-3_arm64.deb ... 1764s Unpacking liblapack3:arm64 (3.12.0-3) ... 1766s Selecting previously unselected package libltdl-dev:arm64. 1766s Preparing to unpack .../211-libltdl-dev_2.4.7-7_arm64.deb ... 1766s Unpacking libltdl-dev:arm64 (2.4.7-7) ... 1767s Selecting previously unselected package libnl-3-dev:arm64. 1767s Preparing to unpack .../212-libnl-3-dev_3.7.0-0.3_arm64.deb ... 1767s Unpacking libnl-3-dev:arm64 (3.7.0-0.3) ... 1768s Selecting previously unselected package libnl-route-3-dev:arm64. 1768s Preparing to unpack .../213-libnl-route-3-dev_3.7.0-0.3_arm64.deb ... 1768s Unpacking libnl-route-3-dev:arm64 (3.7.0-0.3) ... 1769s Selecting previously unselected package libmunge2:arm64. 1769s Preparing to unpack .../214-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 1769s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 1769s Selecting previously unselected package libpciaccess0:arm64. 1770s Preparing to unpack .../215-libpciaccess0_0.17-3_arm64.deb ... 1770s Unpacking libpciaccess0:arm64 (0.17-3) ... 1770s Selecting previously unselected package libxnvctrl0:arm64. 1770s Preparing to unpack .../216-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 1770s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 1771s Selecting previously unselected package ocl-icd-libopencl1:arm64. 1771s Preparing to unpack .../217-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 1771s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 1772s Selecting previously unselected package libhwloc-plugins:arm64. 1772s Preparing to unpack .../218-libhwloc-plugins_2.10.0-1_arm64.deb ... 1772s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 1772s Selecting previously unselected package libpmix2:arm64. 1773s Preparing to unpack .../219-libpmix2_5.0.1-4_arm64.deb ... 1773s Unpacking libpmix2:arm64 (5.0.1-4) ... 1773s Selecting previously unselected package libucx0:arm64. 1774s Preparing to unpack .../220-libucx0_1.16.0+ds-4_arm64.deb ... 1774s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 1775s Selecting previously unselected package libopenmpi3:arm64. 1775s Preparing to unpack .../221-libopenmpi3_4.1.6-5ubuntu1_arm64.deb ... 1775s Unpacking libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 1778s Selecting previously unselected package libpaper1:arm64. 1778s Preparing to unpack .../222-libpaper1_1.1.29_arm64.deb ... 1778s Unpacking libpaper1:arm64 (1.1.29) ... 1778s Selecting previously unselected package libpaper-utils. 1779s Preparing to unpack .../223-libpaper-utils_1.1.29_arm64.deb ... 1779s Unpacking libpaper-utils (1.1.29) ... 1779s Selecting previously unselected package libnuma-dev:arm64. 1779s Preparing to unpack .../224-libnuma-dev_2.0.18-1_arm64.deb ... 1779s Unpacking libnuma-dev:arm64 (2.0.18-1) ... 1780s Selecting previously unselected package libhwloc-dev:arm64. 1780s Preparing to unpack .../225-libhwloc-dev_2.10.0-1_arm64.deb ... 1780s Unpacking libhwloc-dev:arm64 (2.10.0-1) ... 1781s Selecting previously unselected package zlib1g-dev:arm64. 1781s Preparing to unpack .../226-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 1781s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 1782s Selecting previously unselected package libpmix-dev:arm64. 1782s Preparing to unpack .../227-libpmix-dev_5.0.1-4_arm64.deb ... 1782s Unpacking libpmix-dev:arm64 (5.0.1-4) ... 1786s Selecting previously unselected package libpstreams-dev. 1786s Preparing to unpack .../228-libpstreams-dev_1.0.3-1_all.deb ... 1786s Unpacking libpstreams-dev (1.0.3-1) ... 1787s Selecting previously unselected package libtcl8.6:arm64. 1787s Preparing to unpack .../229-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 1787s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 1789s Selecting previously unselected package libterm-readkey-perl. 1789s Preparing to unpack .../230-libterm-readkey-perl_2.38-2build2_arm64.deb ... 1789s Unpacking libterm-readkey-perl (2.38-2build2) ... 1790s Selecting previously unselected package libtext-wrapper-perl. 1790s Preparing to unpack .../231-libtext-wrapper-perl_1.05-4_all.deb ... 1790s Unpacking libtext-wrapper-perl (1.05-4) ... 1791s Selecting previously unselected package libxft2:arm64. 1791s Preparing to unpack .../232-libxft2_2.3.6-1_arm64.deb ... 1791s Unpacking libxft2:arm64 (2.3.6-1) ... 1791s Selecting previously unselected package libxss1:arm64. 1791s Preparing to unpack .../233-libxss1_1%3a1.2.3-1build2_arm64.deb ... 1791s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 1792s Selecting previously unselected package libtk8.6:arm64. 1792s Preparing to unpack .../234-libtk8.6_8.6.13-2_arm64.deb ... 1792s Unpacking libtk8.6:arm64 (8.6.13-2) ... 1793s Selecting previously unselected package libxt6:arm64. 1794s Preparing to unpack .../235-libxt6_1%3a1.2.1-1.1_arm64.deb ... 1794s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 1794s Selecting previously unselected package zip. 1794s Preparing to unpack .../236-zip_3.0-13_arm64.deb ... 1794s Unpacking zip (3.0-13) ... 1795s Selecting previously unselected package unzip. 1795s Preparing to unpack .../237-unzip_6.0-28ubuntu3_arm64.deb ... 1795s Unpacking unzip (6.0-28ubuntu3) ... 1796s Selecting previously unselected package xdg-utils. 1796s Preparing to unpack .../238-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 1796s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 1797s Selecting previously unselected package r-base-core. 1797s Preparing to unpack .../239-r-base-core_4.3.2-1build1_arm64.deb ... 1797s Unpacking r-base-core (4.3.2-1build1) ... 1810s Selecting previously unselected package r-cran-gtools. 1810s Preparing to unpack .../240-r-cran-gtools_3.9.5-1_arm64.deb ... 1810s Unpacking r-cran-gtools (3.9.5-1) ... 1811s Selecting previously unselected package r-cran-bitops. 1811s Preparing to unpack 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previously unselected package r-cran-rocr. 1817s Preparing to unpack .../247-r-cran-rocr_1.0-11-2build1_all.deb ... 1817s Unpacking r-cran-rocr (1.0-11-2build1) ... 1818s Selecting previously unselected package murasaki-common. 1818s Preparing to unpack .../248-murasaki-common_1.68.6-13build4_all.deb ... 1818s Unpacking murasaki-common (1.68.6-13build4) ... 1819s Selecting previously unselected package murasaki. 1819s Preparing to unpack .../249-murasaki_1.68.6-13build4_arm64.deb ... 1819s Unpacking murasaki (1.68.6-13build4) ... 1821s Selecting previously unselected package murasaki-mpi. 1821s Preparing to unpack .../250-murasaki-mpi_1.68.6-13build4_arm64.deb ... 1821s Unpacking murasaki-mpi (1.68.6-13build4) ... 1822s Selecting previously unselected package openmpi-common. 1822s Preparing to unpack .../251-openmpi-common_4.1.6-5ubuntu1_all.deb ... 1822s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 1823s Selecting previously unselected package openmpi-bin. 1823s Preparing to unpack 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libpaper1:arm64 (1.1.29) ... 1841s 1841s Creating config file /etc/papersize with new version 1842s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 1842s Setting up libpciaccess0:arm64 (0.17-3) ... 1842s Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 1843s Setting up libdouble-conversion3:arm64 (3.3.0-1) ... 1843s Setting up libevent-extra-2.1-7:arm64 (2.1.12-stable-9) ... 1843s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 1843s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 1843s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 1843s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1843s Setting up libxpm4:arm64 (1:3.5.17-1) ... 1843s Setting up hicolor-icon-theme (0.17-2) ... 1844s Setting up libxi6:arm64 (2:1.8.1-1) ... 1844s Setting up libxcb-xinput0:arm64 (1.15-1) ... 1844s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 1844s Setting up libdatrie1:arm64 (0.2.13-3) ... 1844s Setting up libxcb-render0:arm64 (1.15-1) ... 1844s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 1844s Setting up libglvnd0:arm64 (1.7.0-1) ... 1844s Setting up libboost-regex1.83.0:arm64 (1.83.0-2ubuntu1) ... 1844s Setting up libxcb-glx0:arm64 (1.15-1) ... 1844s Setting up unzip (6.0-28ubuntu3) ... 1845s Setting up libboost-system1.83.0:arm64 (1.83.0-2ubuntu1) ... 1845s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 1845s Setting up libxcb-keysyms1:arm64 (0.4.0-1build3) ... 1845s Setting up libxcb-shape0:arm64 (1.15-1) ... 1845s Setting up x11-common (1:7.7+23ubuntu2) ... 1857s Setting up libdeflate0:arm64 (1.19-1) ... 1857s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 1857s Setting up libevent-openssl-2.1-7:arm64 (2.1.12-stable-9) ... 1857s Setting up m4 (1.4.19-4) ... 1857s Setting up libxcb-render-util0:arm64 (0.3.9-1build3) ... 1857s Setting up libxcb-shm0:arm64 (1.15-1) ... 1857s Setting up libxcb-icccm4:arm64 (0.4.1-1.1build2) ... 1858s Setting up libpaper-utils (1.1.29) ... 1858s Setting up libtext-wrapper-perl (1.05-4) ... 1858s Setting up libboost-filesystem1.83.0:arm64 (1.83.0-2ubuntu1) ... 1858s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 1858s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 1858s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 1858s Setting up libcolord2:arm64 (1.4.7-1) ... 1858s Setting up libxcb-util1:arm64 (0.4.0-1build2) ... 1858s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1858s Setting up libxcb-xkb1:arm64 (1.15-1) ... 1858s Setting up libxcb-image0:arm64 (0.4.0-2) ... 1858s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 1858s Setting up libboost-atomic1.83.0:arm64 (1.83.0-2ubuntu1) ... 1858s Setting up libxcb-present0:arm64 (1.15-1) ... 1858s Setting up libdconf1:arm64 (0.40.0-4) ... 1858s Setting up libio-string-perl (1.08-4) ... 1858s Setting up libqt5core5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1859s Setting up zip (3.0-13) ... 1859s Setting up autotools-dev (20220109.1) ... 1859s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 1859s Setting up libblas3:arm64 (3.12.0-3) ... 1859s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 1859s Setting up libxcb-xinerama0:arm64 (1.15-1) ... 1859s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 1859s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 1859s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 1859s Setting up libepoxy0:arm64 (1.5.10-1) ... 1859s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 1860s Setting up libxcb-sync1:arm64 (1.15-1) ... 1860s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-2ubuntu1) ... 1860s Setting up aglfn (1.7+git20191031.4036a9c-2) ... 1860s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 1860s Setting up libatspi2.0-0t64:arm64 (2.51.90-3) ... 1860s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 1860s Setting up libxkbcommon-x11-0:arm64 (1.6.0-1) ... 1860s Setting up fonts-dejavu-mono (2.37-8) ... 1860s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 1860s Setting up libhwloc15:arm64 (2.10.0-1) ... 1860s Setting up libmpc3:arm64 (1.3.1-1) ... 1860s Setting up libcrypto++8t64:arm64 (8.9.0-1.1) ... 1860s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 1860s Setting up libevent-2.1-7:arm64 (2.1.12-stable-9) ... 1860s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 1861s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 1861s Setting up icu-devtools (74.2-1ubuntu1) ... 1861s Setting up fonts-dejavu-core (2.37-8) ... 1861s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1861s Setting up libltdl7:arm64 (2.4.7-7) ... 1861s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 1861s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1861s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 1861s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 1862s Setting up autoconf (2.71-3) ... 1862s Setting up libwebp7:arm64 (1.3.2-0.4) ... 1862s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 1862s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 1862s Setting up libdata-stag-perl (0.14-3) ... 1862s Setting up libdav1d7:arm64 (1.4.0-1) ... 1862s Setting up libnl-3-dev:arm64 (3.7.0-0.3) ... 1862s Setting up liblqr-1-0:arm64 (0.4.2-2.1) ... 1862s Setting up libmtdev1t64:arm64 (1.1.6-1.1) ... 1862s Setting up libnsl-dev:arm64 (1.3.0-3) ... 1862s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 1862s Setting up libxshmfence1:arm64 (1.3-1build4) ... 1862s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 1862s Setting up at-spi2-common (2.51.90-3) ... 1862s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 1863s Setting up libxcb-randr0:arm64 (1.15-1) ... 1863s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 1863s Setting up openmpi-common (4.1.6-5ubuntu1) ... 1863s Setting up libmd4c0:arm64 (0.4.8-1) ... 1863s Setting up librdmacm1t64:arm64 (50.0-2) ... 1863s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 1863s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 1863s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 1863s Setting up libthai-data (0.1.29-2) ... 1863s Setting up libwayland-egl1:arm64 (1.22.0-2.1) ... 1863s Setting up libbio-perl-perl (1.7.8-1) ... 1863s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 1863s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 1863s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1863s Setting up libwxbase3.2-1t64:arm64 (3.2.4+dfsg-3.1build1) ... 1864s Setting up libterm-readkey-perl (2.38-2build2) ... 1864s Setting up libisl23:arm64 (0.26-3) ... 1864s Setting up libde265-0:arm64 (1.0.15-1) ... 1864s Setting up libc-dev-bin (2.39-0ubuntu2) ... 1864s Setting up libwebpmux3:arm64 (1.3.2-0.4) ... 1864s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 1864s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 1864s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 1864s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 1865s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 1865s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 1865s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 1865s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 1865s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 1865s Setting up libwacom-common (2.10.0-1) ... 1865s Setting up libwayland-client0:arm64 (1.22.0-2.1) ... 1865s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 1865s Setting up automake (1:1.16.5-1.3ubuntu1) ... 1865s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 1865s Setting up libfabric1:arm64 (1.17.0-3) ... 1865s Setting up gnuplot-data (6.0.0+dfsg1-1ubuntu2) ... 1865s Setting up libice6:arm64 (2:1.0.10-1build2) ... 1865s Setting up liblapack3:arm64 (3.12.0-3) ... 1865s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 1865s Setting up libqt5dbus5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1865s Setting up libatk1.0-0t64:arm64 (2.51.90-3) ... 1866s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1866s Setting up libgbm1:arm64 (24.0.1-1ubuntu1) ... 1866s Setting up libwacom9:arm64 (2.10.0-1) ... 1866s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 1870s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 1870s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ... 1870s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 1871s Setting up libcrypto++-dev:arm64 (8.9.0-1.1) ... 1871s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1871s Setting up libqt5network5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1871s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 1871s Setting up dconf-service (0.40.0-4) ... 1871s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 1871s Setting up libinput-bin (1.25.0-1) ... 1871s Setting up libnl-route-3-dev:arm64 (3.7.0-0.3) ... 1871s Setting up libltdl-dev:arm64 (2.4.7-7) ... 1871s Setting up libthai0:arm64 (0.1.29-2) ... 1871s Setting up libegl-mesa0:arm64 (24.0.1-1ubuntu1) ... 1871s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1871s Setting up libevent-dev (2.1.12-stable-9) ... 1871s Setting up libpstreams-dev (1.0.3-1) ... 1871s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 1871s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1871s Setting up libwayland-cursor0:arm64 (1.22.0-2.1) ... 1871s Setting up libegl1:arm64 (1.7.0-1) ... 1871s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 1871s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 1872s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 1872s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1872s Setting up libraw23:arm64 (0.21.2-2) ... 1872s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 1872s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 1872s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 1872s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 1872s Setting up libhsakmt1:arm64 (5.7.0-1) ... 1872s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 1872s Setting up libatk-bridge2.0-0t64:arm64 (2.51.90-3) ... 1872s Setting up libinput10:arm64 (1.25.0-1) ... 1872s Setting up gtk-update-icon-cache (3.24.41-1.1ubuntu1) ... 1872s Setting up fontconfig (2.15.0-1ubuntu1) ... 1875s Regenerating fonts cache... done. 1875s Setting up libxft2:arm64 (2.3.6-1) ... 1875s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1875s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1875s Setting up libglx0:arm64 (1.7.0-1) ... 1875s Setting up dconf-gsettings-backend:arm64 (0.40.0-4) ... 1875s Setting up libpmix2:arm64 (5.0.1-4) ... 1875s Setting up libtk8.6:arm64 (8.6.13-2) ... 1875s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1875s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1875s Setting up libibverbs-dev:arm64 (50.0-2) ... 1875s Setting up libcairo2:arm64 (1.18.0-1) ... 1875s Setting up libnuma-dev:arm64 (2.0.18-1) ... 1875s Setting up libgl1:arm64 (1.7.0-1) ... 1875s Setting up libnotify4:arm64 (0.8.3-1) ... 1875s Setting up libgd3:arm64 (2.3.3-9ubuntu1) ... 1875s Setting up gcc-13 (13.2.0-17ubuntu2) ... 1875s Setting up libboost-regex1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1875s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 1875s Setting up libboost-atomic1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1875s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 1875s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 1875s Setting up libhsa-runtime64-1 (5.7.1-1) ... 1875s Setting up libcairo-gobject2:arm64 (1.18.0-1) ... 1875s Setting up libhwloc-dev:arm64 (2.10.0-1) ... 1875s Setting up libboost-system1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1875s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 1875s Setting up libboost-regex-dev:arm64 (1.83.0.1ubuntu2) ... 1875s Setting up libpmix-dev:arm64 (5.0.1-4) ... 1875s Setting up libgtk-3-common (3.24.41-1.1ubuntu1) ... 1875s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 1875s Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1875s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1875s Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-2ubuntu1) ... 1875s Setting up libboost-iostreams-dev:arm64 (1.83.0.1ubuntu2) ... 1875s Setting up libqt5gui5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1875s Setting up libamdhip64-5 (5.2.3-12) ... 1875s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 1875s Setting up r-base-core (4.3.2-1build1) ... 1881s 1882s Creating config file /etc/R/Renviron with new version 1883s Setting up libboost-filesystem-dev:arm64 (1.83.0.1ubuntu2) ... 1883s Setting up libucx0:arm64 (1.16.0+ds-4) ... 1883s Setting up libqt5widgets5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1883s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 1883s Setting up libqt5svg5:arm64 (5.15.12-1) ... 1883s Setting up r-cran-mass (7.3-60.0.1-1) ... 1883s Setting up r-cran-gtools (3.9.5-1) ... 1883s Setting up r-cran-bitops (1.0-7-1) ... 1883s Setting up r-cran-kernsmooth (2.23-22-1) ... 1883s Setting up r-cran-catools (1.18.2-1) ... 1883s Setting up r-cran-gdata (3.0.0-1) ... 1884s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 1884s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1884s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1884s Setting up libqt5printsupport5t64:arm64 (5.15.12+dfsg-3ubuntu5) ... 1884s Setting up libopenmpi-dev:arm64 (4.1.6-5ubuntu1) ... 1884s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 1884s Setting up r-cran-gplots (3.1.3.1-1) ... 1884s Setting up r-cran-rocr (1.0-11-2build1) ... 1884s Setting up adwaita-icon-theme (46~rc-1) ... 1885s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 1885s Setting up libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 1885s Setting up libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 1885s Setting up libheif1:arm64 (1.17.6-1ubuntu1) ... 1885s Setting up libmagickcore-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ... 1885s Setting up humanity-icon-theme (0.6.16) ... 1891s Setting up libmagickwand-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ... 1891s Setting up ubuntu-mono (24.04-0ubuntu1) ... 1893s Setting up imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ... 1894s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode 1894s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode 1894s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode 1894s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode 1894s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode 1894s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode 1894s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode 1894s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode 1895s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode 1895s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode 1895s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode 1895s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode 1895s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode 1895s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode 1895s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode 1895s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode 1895s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode 1895s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode 1895s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode 1896s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode 1896s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 1896s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode 1896s Setting up imagemagick (8:6.9.12.98+dfsg1-5) ... 1896s Processing triggers for install-info (7.1-3) ... 1898s Processing triggers for libc-bin (2.39-0ubuntu2) ... 1900s Processing triggers for man-db (2.12.0-3) ... 1927s Processing triggers for libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 1927s Setting up libgtk-3-0t64:arm64 (3.24.41-1.1ubuntu1) ... 1928s Processing triggers for udev (255.2-3ubuntu2) ... 1936s Setting up libwxgtk3.2-1t64:arm64 (3.2.4+dfsg-3.1build1) ... 1936s Setting up gnuplot-qt (6.0.0+dfsg1-1ubuntu2) ... 1936s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode 1937s Setting up murasaki-common (1.68.6-13build4) ... 1937s Setting up gnuplot (6.0.0+dfsg1-1ubuntu2) ... 1937s Setting up murasaki (1.68.6-13build4) ... 1937s Setting up murasaki-mpi (1.68.6-13build4) ... 1937s Setting up autopkgtest-satdep (0) ... 1937s Processing triggers for libc-bin (2.39-0ubuntu2) ... 2062s (Reading database ... 118081 files and directories currently installed.) 2062s Removing autopkgtest-satdep (0) ... 2066s autopkgtest [08:56:57]: test run-unit-test: [----------------------- 2069s Test Murasaki on NZ_GG705055.fna 2069s Created output directory: /tmp/autopkgtest.zMX9cF/autopkgtest_tmp/output 2069s Verbosity level is: 0 2069s Writing to: output/test 2069s Pattern is: 101 2069s Max usable hash bits: 27 2069s Hit filter is: 0 2069s Hash table type is: EcoHash 2069s Hashing every: 1 base 2069s Histogram detail is: 0 2069s Hashing function is: 3 2069s Collision profiling is: disabled 2069s Repeats are: unmasked 2069s Mergefilter is at: 100 2069s Random seed: 1710493020 (automatic) 2069s Bitscore output: on 2069s Leave status records: no 2069s Join neighbors is: off 2069s Target memory is: 1.28 GB 2069s Retain members is: true 2069s Store repeatmap? yes 2069s Reverse complement data is generated on the fly 2069s Rifts allowed: 0 2069s Fuzzy Extension: yes 2069s Score by minimum pair: yes 2069s Gapped anchors: no 2069s Large sequence support is: enabled => seqpos is 8 bytes 2069s Murasaki version 1.68.6 (LARGESEQ) 2069s Loading NZ_GG705055.fna 2069s Read 398859bp (389.51 KBp) in 0.348 seconds (1.1 MBp/s) 2069s Done with forward strand (410644bp). Preparing reverse complement... 2069s <-> Reversing metdata. 2069s Done. 2069s Seq NZ_GG705055.fna loaded. 401.02 KB 2069s Loading NZ_GG705055.gbk 2070s Read 398859bp (389.51 KBp) in 0.381 seconds (1022.1 KBp/s) 2070s Done with forward strand (410644bp). Preparing reverse complement... 2070s <-> Reversing metdata. 2070s Done. 2070s Seq NZ_GG705055.gbk loaded. 401.02 KB 2070s Sequence loading took: 0.744 seconds 2070s Forward frequencies: A:28.0367% C:23.1004% G:20.9036% T:27.9593% 2070s Global base frequencies: A/T:55.996% C/G:44.004% 2070s Pat: 3 bases long with weight 2 2070s 1 101 2070s Computing hash parameters... 2070s Using 4 hashbits 2070s 0%......... (T -2.514 seconds) ETA: Fri Mar 15 08:57:03 2024 2070s 10%......... (T -2.037 seconds) ETA: Fri Mar 15 08:57:03 2024 2070s 20%......... (T -1.711 seconds) ETA: Fri Mar 15 08:57:03 2024 2071s 30%......... (T -1.488 seconds) ETA: Fri Mar 15 08:57:03 2024 2071s 40%......... (T -1.203 seconds) ETA: Fri Mar 15 08:57:03 2024 2071s 50%......... (T -0.952 seconds) ETA: Fri Mar 15 08:57:03 2024 2071s 60%......... (T -0.723 seconds) ETA: Fri Mar 15 08:57:03 2024 2072s 70%......... (T -0.485 seconds) ETA: Fri Mar 15 08:57:03 2024 2072s 80%......... (T -0.217 seconds) ETA: Fri Mar 15 08:57:03 2024 2072s 91%........ 2072s Acceptable hash function found after 1000 cycles. 2072s Best uses 2/2 bases and has 0 empties from 2 inputs. 2072s Score: 0.96875 (cf. worst: -4.51562) 2072s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2072s Total correlation penalty: 0 2072s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2072s 10 2072s == 2072s w[ 0]>>29: -.C 2072s w[ 0]>>30: A.- 2072s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 2072s Ecolist (optimistic): Expcted entries per list: 17 2072s Ecolist (optimistic): Minimum chunks per list: 2 2072s Would take minimum 256.000000 bytes to make perfect hash. 2072s Hashing 1.52 MB of sequence requires: 2072s ~ linear (in seq length) hashing cost of 4.18 MB 2072s ~ linear (in seq length) expected anchor cost of 37.60 MB 2072s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2072s Expected memory usage (without anchors): 4.18 MB 2072s Expected memory usage (with anchors): 41.78 MB 2072s Hash parameters computed in 2.437 seconds 2072s Creating storage structures: 16 entries in 256 bytes space. 2072s Storage structures created in: 0.007 seconds 2072s 2072s Hashing NZ_GG705055.fna forwards 2072s 0%......... (T -0.546 seconds) ETA: Fri Mar 15 08:57:04 2024 2072s 10%......... (T -0.522 seconds) ETA: Fri Mar 15 08:57:04 2024 2072s 20%......... (T -0.493 seconds) ETA: Fri Mar 15 08:57:04 2024 2072s 30%......... (T -0.436 seconds) ETA: Fri Mar 15 08:57:04 2024 2073s 40%......... (T -0.397 seconds) ETA: Fri Mar 15 08:57:04 2024 2073s 50%......... (T -0.347 seconds) ETA: Fri Mar 15 08:57:04 2024 2073s 60%......... (T -0.256 seconds) ETA: Fri Mar 15 08:57:04 2024 2073s 70%......... (T -0.169 seconds) ETA: Fri Mar 15 08:57:04 2024 2073s 80%......... (T -0.084 seconds) ETA: Fri Mar 15 08:57:04 2024 2073s 90%......... 2073s Hashing NZ_GG705055.fna backwards 2073s 0%......... (T -0.789 seconds) ETA: Fri Mar 15 08:57:05 2024 2073s 10%......... (T -0.706 seconds) ETA: Fri Mar 15 08:57:05 2024 2073s 20%......... (T -0.634 seconds) ETA: Fri Mar 15 08:57:05 2024 2073s 30%......... (T -0.530 seconds) ETA: Fri Mar 15 08:57:05 2024 2073s 40%......... (T -0.451 seconds) ETA: Fri Mar 15 08:57:05 2024 2074s 50%......... (T -0.358 seconds) ETA: Fri Mar 15 08:57:05 2024 2074s 60%......... (T -0.265 seconds) ETA: Fri Mar 15 08:57:05 2024 2074s 70%......... (T -0.177 seconds) ETA: Fri Mar 15 08:57:05 2024 2074s 80%......... (T -0.089 seconds) ETA: Fri Mar 15 08:57:05 2024 2074s 90%......... 2074s Hashing NZ_GG705055.gbk forwards 2074s 0%......... (T -0.689 seconds) ETA: Fri Mar 15 08:57:06 2024 2074s 10%......... (T -0.667 seconds) ETA: Fri Mar 15 08:57:06 2024 2074s 20%......... (T -0.595 seconds) ETA: Fri Mar 15 08:57:06 2024 2074s 30%......... (T -0.586 seconds) ETA: Fri Mar 15 08:57:06 2024 2074s 40%......... (T -0.486 seconds) ETA: Fri Mar 15 08:57:06 2024 2074s 50%......... (T -0.392 seconds) ETA: Fri Mar 15 08:57:06 2024 2075s 60%......... (T -0.287 seconds) ETA: Fri Mar 15 08:57:06 2024 2075s 70%......... (T -0.193 seconds) ETA: Fri Mar 15 08:57:06 2024 2075s 80%......... (T -0.095 seconds) ETA: Fri Mar 15 08:57:06 2024 2075s 90%......... 2075s Hashing NZ_GG705055.gbk backwards 2075s 0%......... (T -0.742 seconds) ETA: Fri Mar 15 08:57:07 2024 2075s 10%......... (T -0.673 seconds) ETA: Fri Mar 15 08:57:07 2024 2075s 20%......... (T -0.642 seconds) ETA: Fri Mar 15 08:57:07 2024 2075s 30%......... (T -0.567 seconds) ETA: Fri Mar 15 08:57:07 2024 2075s 40%......... (T -0.482 seconds) ETA: Fri Mar 15 08:57:07 2024 2075s 50%......... (T -0.378 seconds) ETA: Fri Mar 15 08:57:07 2024 2075s 60%......... (T -0.281 seconds) ETA: Fri Mar 15 08:57:07 2024 2076s 70%......... (T -0.190 seconds) ETA: Fri Mar 15 08:57:07 2024 2076s 80%......... (T -0.097 seconds) ETA: Fri Mar 15 08:57:07 2024 2076s 90%......... 2076s Initial hashing took: 3.694 seconds 2076s Extracting anchors from hash-space. 2078s (T -29.850 seconds) ETA: Fri Mar 15 08:57:39 2024 2082s 6%. (T -27.460 seconds) ETA: Fri Mar 15 08:57:40 2024 2085s 18%. (T -18.965 seconds) ETA: Fri Mar 15 08:57:34 2024 2087s 31%. (T -14.760 seconds) ETA: Fri Mar 15 08:57:33 2024 2091s 43%. (T -11.661 seconds) ETA: Fri Mar 15 08:57:33 2024 2095s 56%. (T -8.898 seconds) ETA: Fri Mar 15 08:57:35 2024 2097s 68%. (T -4.987 seconds) ETA: Fri Mar 15 08:57:33 2024 2102s 81%. (T -1.990 seconds) ETA: Fri Mar 15 08:57:35 2024 2104s 93%. 2104s Anchor extraction completed in: 28.208 seconds 2104s Total anchors: 0 2104s Anchor extraction + merge time: 28.208 seconds 2104s Total processing time: 35.093 seconds 2104s Writing anchors... 2104s Total seeds used in anchors: 16 2104s Hash performance: 2104s Keys used: 16 out of 16 possible (100.00%). 2104s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2104s Average pigeons per pigeon hole: 1 2110s Writing 16 repeats...Output writing finished in: 6.428 seconds 2110s Total time: 41.521 seconds 2110s Murasaki finished! 2111s PASSED MURASAKI 2111s 2111s Testing Genepare on NZ_GG705055.fna 2111s 1001 2111s PASSED GENEPARSE 2111s 2112s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2112s Testing mbfa on NZ_GG705055.fna 2113s PASSED mbfa 2113s 2113s Test Murasaki on NZ_GG705056.fna 2113s Verbosity level is: 0 2113s Writing to: output/test 2113s Pattern is: 101 2113s Max usable hash bits: 27 2113s Hit filter is: 0 2113s Hash table type is: EcoHash 2113s Hashing every: 1 base 2113s Histogram detail is: 0 2113s Hashing function is: 3 2113s Collision profiling is: disabled 2113s Repeats are: unmasked 2113s Mergefilter is at: 100 2113s Random seed: 1710493064 (automatic) 2113s Bitscore output: on 2113s Leave status records: no 2113s Join neighbors is: off 2113s Target memory is: 1.28 GB 2113s Retain members is: true 2113s Store repeatmap? yes 2113s Reverse complement data is generated on the fly 2113s Rifts allowed: 0 2113s Fuzzy Extension: yes 2113s Score by minimum pair: yes 2113s Gapped anchors: no 2113s Large sequence support is: enabled => seqpos is 8 bytes 2113s Murasaki version 1.68.6 (LARGESEQ) 2113s Loading NZ_GG705056.fna 2113s Read 395160bp (385.90 KBp) in 0.368 seconds (1.0 MBp/s) 2113s Done with forward strand (409732bp). Preparing reverse complement... 2113s <-> Reversing metdata. 2113s Done. 2113s Seq NZ_GG705056.fna loaded. 400.13 KB 2113s Loading NZ_GG705056.gbk 2114s Read 395160bp (385.90 KBp) in 0.649 seconds (594.4 KBp/s) 2114s Done with forward strand (409732bp). Preparing reverse complement... 2114s <-> Reversing metdata. 2114s Done. 2114s Seq NZ_GG705056.gbk loaded. 400.13 KB 2114s Sequence loading took: 1.032 seconds 2114s Forward frequencies: A:28.3574% C:22.4405% G:20.4591% T:28.743% 2114s Global base frequencies: A/T:57.1004% C/G:42.8996% 2114s Pat: 3 bases long with weight 2 2114s 1 101 2114s Computing hash parameters... 2114s Using 4 hashbits 2114s 0%......... (T -2.636 seconds) ETA: Fri Mar 15 08:57:48 2024 2115s 10%......... (T -2.278 seconds) ETA: Fri Mar 15 08:57:48 2024 2115s 20%......... (T -2.225 seconds) ETA: Fri Mar 15 08:57:48 2024 2115s 30%......... (T -1.978 seconds) ETA: Fri Mar 15 08:57:48 2024 2116s 40%......... (T -1.592 seconds) ETA: Fri Mar 15 08:57:48 2024 2116s 50%......... (T -1.211 seconds) ETA: Fri Mar 15 08:57:48 2024 2116s 60%......... (T -0.872 seconds) ETA: Fri Mar 15 08:57:48 2024 2116s 70%......... (T -0.568 seconds) ETA: Fri Mar 15 08:57:48 2024 2117s 80%......... (T -0.248 seconds) ETA: Fri Mar 15 08:57:48 2024 2117s 91%........ 2117s Acceptable hash function found after 1000 cycles. 2117s Best uses 2/2 bases and has 0 empties from 2 inputs. 2117s Score: 0.96875 (cf. worst: -4.51562) 2117s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2117s Total correlation penalty: 0 2117s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2117s 10 2117s == 2117s w[ 0]>>29: -.C 2117s w[ 0]>>30: A.- 2117s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 2117s Ecolist (optimistic): Expcted entries per list: 17 2117s Ecolist (optimistic): Minimum chunks per list: 2 2117s Would take minimum 256.000000 bytes to make perfect hash. 2117s Hashing 1.51 MB of sequence requires: 2117s ~ linear (in seq length) hashing cost of 4.15 MB 2117s ~ linear (in seq length) expected anchor cost of 37.51 MB 2117s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2117s Expected memory usage (without anchors): 4.15 MB 2117s Expected memory usage (with anchors): 41.66 MB 2117s Hash parameters computed in 2.731 seconds 2117s Creating storage structures: 16 entries in 256 bytes space. 2117s Storage structures created in: 0.002 seconds 2117s 2117s Hashing NZ_GG705056.fna forwards 2117s 0%......... (T -0.732 seconds) ETA: Fri Mar 15 08:57:49 2024 2117s 10%......... (T -0.618 seconds) ETA: Fri Mar 15 08:57:48 2024 2117s 20%......... (T -0.545 seconds) ETA: Fri Mar 15 08:57:48 2024 2117s 30%......... (T -0.472 seconds) ETA: Fri Mar 15 08:57:48 2024 2117s 40%......... (T -0.399 seconds) ETA: Fri Mar 15 08:57:48 2024 2117s 50%......... (T -0.321 seconds) ETA: Fri Mar 15 08:57:49 2024 2117s 60%......... (T -0.244 seconds) ETA: Fri Mar 15 08:57:49 2024 2117s 70%......... (T -0.165 seconds) ETA: Fri Mar 15 08:57:49 2024 2117s 80%......... (T -0.083 seconds) ETA: Fri Mar 15 08:57:49 2024 2118s 90%......... 2118s Hashing NZ_GG705056.fna backwards 2118s 0%......... (T -1.189 seconds) ETA: Fri Mar 15 08:57:50 2024 2118s 10%......... (T -0.884 seconds) ETA: Fri Mar 15 08:57:50 2024 2118s 20%......... (T -0.732 seconds) ETA: Fri Mar 15 08:57:50 2024 2118s 30%......... (T -0.610 seconds) ETA: Fri Mar 15 08:57:50 2024 2118s 40%......... (T -0.495 seconds) ETA: Fri Mar 15 08:57:50 2024 2118s 50%......... (T -0.394 seconds) ETA: Fri Mar 15 08:57:50 2024 2118s 60%......... (T -0.293 seconds) ETA: Fri Mar 15 08:57:50 2024 2118s 70%......... (T -0.193 seconds) ETA: Fri Mar 15 08:57:50 2024 2118s 80%......... (T -0.097 seconds) ETA: Fri Mar 15 08:57:50 2024 2119s 90%......... 2119s Hashing NZ_GG705056.gbk forwards 2119s 0%......... (T -0.846 seconds) ETA: Fri Mar 15 08:57:50 2024 2119s 10%......... (T -0.813 seconds) ETA: Fri Mar 15 08:57:51 2024 2119s 20%......... (T -0.684 seconds) ETA: Fri Mar 15 08:57:51 2024 2119s 30%......... (T -0.563 seconds) ETA: Fri Mar 15 08:57:50 2024 2119s 40%......... (T -0.472 seconds) ETA: Fri Mar 15 08:57:50 2024 2119s 50%......... (T -0.369 seconds) ETA: Fri Mar 15 08:57:50 2024 2119s 60%......... (T -0.273 seconds) ETA: Fri Mar 15 08:57:50 2024 2119s 70%......... (T -0.182 seconds) ETA: Fri Mar 15 08:57:50 2024 2119s 80%......... (T -0.091 seconds) ETA: Fri Mar 15 08:57:50 2024 2120s 90%......... 2120s Hashing NZ_GG705056.gbk backwards 2120s 0%......... (T -0.794 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 10%......... (T -0.688 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 20%......... (T -0.597 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 30%......... (T -0.512 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 40%......... (T -0.429 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 50%......... (T -0.342 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 60%......... (T -0.258 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 70%......... (T -0.172 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 80%......... (T -0.086 seconds) ETA: Fri Mar 15 08:57:51 2024 2120s 90%......... 2120s Initial hashing took: 3.628 seconds 2120s Extracting anchors from hash-space. 2122s (T -27.135 seconds) ETA: Fri Mar 15 08:58:20 2024 2128s 6%. (T -32.498 seconds) ETA: Fri Mar 15 08:58:31 2024 2131s 18%. (T -22.796 seconds) ETA: Fri Mar 15 08:58:24 2024 2135s 31%. (T -19.487 seconds) ETA: Fri Mar 15 08:58:26 2024 2138s 43%. (T -13.919 seconds) ETA: Fri Mar 15 08:58:23 2024 2141s 56%. (T -9.934 seconds) ETA: Fri Mar 15 08:58:22 2024 2144s 68%. (T -5.438 seconds) ETA: Fri Mar 15 08:58:20 2024 2148s 81%. (T -2.056 seconds) ETA: Fri Mar 15 08:58:21 2024 2149s 93%. 2149s Anchor extraction completed in: 28.809 seconds 2149s Total anchors: 0 2149s Anchor extraction + merge time: 28.810 seconds 2149s Total processing time: 36.214 seconds 2149s Writing anchors... 2149s Total seeds used in anchors: 16 2149s Hash performance: 2149s Keys used: 16 out of 16 possible (100.00%). 2149s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2149s Average pigeons per pigeon hole: 1 2154s Writing 16 repeats...Output writing finished in: 4.824 seconds 2154s Total time: 41.038 seconds 2154s Murasaki finished! 2154s PASSED MURASAKI 2154s 2154s Testing Genepare on NZ_GG705056.fna 2154s 1001 2154s PASSED GENEPARSE 2154s 2155s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2155s Testing mbfa on NZ_GG705056.fna 2156s PASSED mbfa 2156s 2156s Test Murasaki on NZ_GG705057.fna 2156s Verbosity level is: 0 2156s Writing to: output/test 2156s Pattern is: 101 2156s Max usable hash bits: 27 2156s Hit filter is: 0 2156s Hash table type is: EcoHash 2156s Hashing every: 1 base 2156s Histogram detail is: 0 2156s Hashing function is: 3 2156s Collision profiling is: disabled 2156s Repeats are: unmasked 2156s Mergefilter is at: 100 2156s Random seed: 1710493107 (automatic) 2156s Bitscore output: on 2156s Leave status records: no 2156s Join neighbors is: off 2156s Target memory is: 1.28 GB 2156s Retain members is: true 2156s Store repeatmap? yes 2156s Reverse complement data is generated on the fly 2156s Rifts allowed: 0 2156s Fuzzy Extension: yes 2156s Score by minimum pair: yes 2156s Gapped anchors: no 2156s Large sequence support is: enabled => seqpos is 8 bytes 2156s Murasaki version 1.68.6 (LARGESEQ) 2156s Loading NZ_GG705057.fna 2156s Read 295987bp (289.05 KBp) in 0.194 seconds (1.5 MBp/s) 2156s Done with forward strand (304045bp). Preparing reverse complement... 2156s <-> Reversing metdata. 2156s Done. 2156s Seq NZ_GG705057.fna loaded. 296.92 KB 2156s Loading NZ_GG705057.gbk 2156s Read 295987bp (289.05 KBp) in 0.394 seconds (734.2 KBp/s) 2156s Done with forward strand (304045bp). Preparing reverse complement... 2156s <-> Reversing metdata. 2156s Done. 2156s Seq NZ_GG705057.gbk loaded. 296.92 KB 2156s Sequence loading took: 0.596 seconds 2156s Forward frequencies: A:28.7229% C:20.2448% G:22.7206% T:28.3117% 2156s Global base frequencies: A/T:57.0346% C/G:42.9654% 2156s Pat: 3 bases long with weight 2 2156s 1 101 2156s Computing hash parameters... 2156s Using 4 hashbits 2157s 0%......... (T -4.788 seconds) ETA: Fri Mar 15 08:58:33 2024 2157s 10%......... (T -3.160 seconds) ETA: Fri Mar 15 08:58:31 2024 2158s 20%......... (T -3.181 seconds) ETA: Fri Mar 15 08:58:32 2024 2159s 30%......... (T -3.621 seconds) ETA: Fri Mar 15 08:58:33 2024 2159s 40%......... (T -3.038 seconds) ETA: Fri Mar 15 08:58:33 2024 2160s 50%......... (T -2.405 seconds) ETA: Fri Mar 15 08:58:33 2024 2160s 60%......... (T -1.717 seconds) ETA: Fri Mar 15 08:58:33 2024 2161s 70%......... (T -1.176 seconds) ETA: Fri Mar 15 08:58:33 2024 2162s 80%......... (T -0.537 seconds) ETA: Fri Mar 15 08:58:33 2024 2162s 91%........ 2162s Acceptable hash function found after 1000 cycles. 2162s Best uses 2/2 bases and has 0 empties from 2 inputs. 2162s Score: 0.96875 (cf. worst: -4.51562) 2162s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2162s Total correlation penalty: 0 2162s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2162s 10 2162s == 2162s w[ 0]>>29: -.C 2162s w[ 0]>>30: A.- 2162s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 2162s Ecolist (optimistic): Expcted entries per list: 17 2162s Ecolist (optimistic): Minimum chunks per list: 2 2162s Would take minimum 256.000000 bytes to make perfect hash. 2162s Hashing 1.13 MB of sequence requires: 2162s ~ linear (in seq length) hashing cost of 3.11 MB 2162s ~ linear (in seq length) expected anchor cost of 27.84 MB 2162s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2162s Expected memory usage (without anchors): 3.11 MB 2162s Expected memory usage (with anchors): 30.94 MB 2162s Hash parameters computed in 6.061 seconds 2162s Creating storage structures: 16 entries in 256 bytes space. 2162s Storage structures created in: 0.012 seconds 2162s 2162s Hashing NZ_GG705057.fna forwards 2163s 0%......... (T -1.478 seconds) ETA: Fri Mar 15 08:58:35 2024 2163s 10%......... (T -1.410 seconds) ETA: Fri Mar 15 08:58:35 2024 2163s 20%......... (T -1.516 seconds) ETA: Fri Mar 15 08:58:36 2024 2163s 30%......... (T -1.378 seconds) ETA: Fri Mar 15 08:58:36 2024 2163s 40%......... (T -1.038 seconds) ETA: Fri Mar 15 08:58:35 2024 2164s 50%......... (T -0.955 seconds) ETA: Fri Mar 15 08:58:36 2024 2164s 60%......... (T -0.691 seconds) ETA: Fri Mar 15 08:58:36 2024 2164s 70%......... (T -0.466 seconds) ETA: Fri Mar 15 08:58:36 2024 2165s 80%......... (T -0.242 seconds) ETA: Fri Mar 15 08:58:36 2024 2165s 90%......... 2165s Hashing NZ_GG705057.fna backwards 2165s 0%......... (T -0.837 seconds) ETA: Fri Mar 15 08:58:37 2024 2165s 10%......... (T -0.677 seconds) ETA: Fri Mar 15 08:58:37 2024 2165s 20%......... (T -0.659 seconds) ETA: Fri Mar 15 08:58:37 2024 2165s 30%......... (T -0.584 seconds) ETA: Fri Mar 15 08:58:37 2024 2166s 40%......... (T -0.585 seconds) ETA: Fri Mar 15 08:58:37 2024 2166s 50%......... (T -0.446 seconds) ETA: Fri Mar 15 08:58:37 2024 2166s 60%......... (T -0.313 seconds) ETA: Fri Mar 15 08:58:37 2024 2166s 70%......... (T -0.198 seconds) ETA: Fri Mar 15 08:58:37 2024 2166s 80%......... (T -0.096 seconds) ETA: Fri Mar 15 08:58:37 2024 2166s 90%......... 2166s Hashing NZ_GG705057.gbk forwards 2166s 0%......... (T -0.781 seconds) ETA: Fri Mar 15 08:58:38 2024 2166s 10%......... (T -0.646 seconds) ETA: Fri Mar 15 08:58:38 2024 2166s 20%......... (T -0.555 seconds) ETA: Fri Mar 15 08:58:38 2024 2166s 30%......... (T -0.451 seconds) ETA: Fri Mar 15 08:58:38 2024 2166s 40%......... (T -0.385 seconds) ETA: Fri Mar 15 08:58:38 2024 2166s 50%......... (T -0.307 seconds) ETA: Fri Mar 15 08:58:38 2024 2166s 60%......... (T -0.230 seconds) ETA: Fri Mar 15 08:58:38 2024 2166s 70%......... (T -0.158 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 80%......... (T -0.077 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 90%......... 2167s Hashing NZ_GG705057.gbk backwards 2167s 0%......... (T -0.750 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 10%......... (T -0.623 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 20%......... (T -0.545 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 30%......... (T -0.465 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 40%......... (T -0.379 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 50%......... (T -0.299 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 60%......... (T -0.253 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 70%......... (T -0.179 seconds) ETA: Fri Mar 15 08:58:38 2024 2167s 80%......... (T -0.092 seconds) ETA: Fri Mar 15 08:58:39 2024 2168s 90%......... 2168s Initial hashing took: 5.216 seconds 2168s Extracting anchors from hash-space. 2169s (T -21.305 seconds) ETA: Fri Mar 15 08:59:01 2024 2172s 6%. (T -19.861 seconds) ETA: Fri Mar 15 08:59:03 2024 2174s 18%. (T -13.569 seconds) ETA: Fri Mar 15 08:58:58 2024 2176s 31%. (T -10.835 seconds) ETA: Fri Mar 15 08:58:58 2024 2177s 43%. (T -7.337 seconds) ETA: Fri Mar 15 08:58:55 2024 2179s 56%. (T -5.470 seconds) ETA: Fri Mar 15 08:58:56 2024 2182s 68%. (T -3.288 seconds) ETA: Fri Mar 15 08:58:56 2024 2184s 81%. (T -1.259 seconds) ETA: Fri Mar 15 08:58:57 2024 2185s 93%. 2185s Anchor extraction completed in: 17.627 seconds 2185s Total anchors: 0 2185s Anchor extraction + merge time: 17.628 seconds 2185s Total processing time: 29.531 seconds 2185s Writing anchors... 2185s Total seeds used in anchors: 16 2185s Hash performance: 2185s Keys used: 16 out of 16 possible (100.00%). 2185s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2185s Average pigeons per pigeon hole: 1 2189s Writing 16 repeats...Output writing finished in: 3.872 seconds 2189s Total time: 33.403 seconds 2189s Murasaki finished! 2189s PASSED MURASAKI 2189s 2189s Testing Genepare on NZ_GG705057.fna 2189s 1001 2189s PASSED GENEPARSE 2189s 2190s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2190s Testing mbfa on NZ_GG705057.fna 2190s PASSED mbfa 2190s 2190s Test Murasaki on NZ_GG705058.fna 2190s Verbosity level is: 0 2190s Writing to: output/test 2190s Pattern is: 101 2190s Max usable hash bits: 27 2190s Hit filter is: 0 2190s Hash table type is: EcoHash 2190s Hashing every: 1 base 2190s Histogram detail is: 0 2190s Hashing function is: 3 2190s Collision profiling is: disabled 2190s Repeats are: unmasked 2190s Mergefilter is at: 100 2190s Random seed: 1710493141 (automatic) 2190s Bitscore output: on 2190s Leave status records: no 2190s Join neighbors is: off 2190s Target memory is: 1.28 GB 2190s Retain members is: true 2190s Store repeatmap? yes 2190s Reverse complement data is generated on the fly 2190s Rifts allowed: 0 2190s Fuzzy Extension: yes 2190s Score by minimum pair: yes 2190s Gapped anchors: no 2190s Large sequence support is: enabled => seqpos is 8 bytes 2190s Murasaki version 1.68.6 (LARGESEQ) 2190s Loading NZ_GG705058.fna 2191s Read 261113bp (254.99 KBp) in 0.166 seconds (1.5 MBp/s) 2191s Done with forward strand (268087bp). Preparing reverse complement... 2191s <-> Reversing metdata. 2191s Done. 2191s Seq NZ_GG705058.fna loaded. 261.80 KB 2191s Loading NZ_GG705058.gbk 2191s Read 261113bp (254.99 KBp) in 0.221 seconds (1.1 MBp/s) 2191s Done with forward strand (268087bp). Preparing reverse complement... 2191s <-> Reversing metdata. 2191s Done. 2191s Seq NZ_GG705058.gbk loaded. 261.80 KB 2191s Sequence loading took: 0.397 seconds 2191s Forward frequencies: A:29.3149% C:19.6057% G:21.8568% T:29.2226% 2191s Global base frequencies: A/T:58.5375% C/G:41.4625% 2191s Pat: 3 bases long with weight 2 2191s 1 101 2191s Computing hash parameters... 2191s Using 4 hashbits 2191s 0%......... (T -1.888 seconds) ETA: Fri Mar 15 08:59:04 2024 2191s 10%......... (T -1.752 seconds) ETA: Fri Mar 15 08:59:04 2024 2192s 20%......... (T -1.528 seconds) ETA: Fri Mar 15 08:59:04 2024 2192s 30%......... (T -1.314 seconds) ETA: Fri Mar 15 08:59:04 2024 2192s 40%......... (T -1.137 seconds) ETA: Fri Mar 15 08:59:04 2024 2193s 50%......... (T -1.090 seconds) ETA: Fri Mar 15 08:59:05 2024 2193s 60%......... (T -0.898 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 70%......... (T -0.647 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 80%......... (T -0.279 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 91%........ 2194s Acceptable hash function found after 1000 cycles. 2194s Best uses 2/2 bases and has 0 empties from 2 inputs. 2194s Score: 0.96875 (cf. worst: -4.51562) 2194s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2194s Total correlation penalty: 0 2194s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2194s 10 2194s == 2194s w[ 0]>>29: -.C 2194s w[ 0]>>30: A.- 2194s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 2194s Ecolist (optimistic): Expcted entries per list: 16 2194s Ecolist (optimistic): Minimum chunks per list: 2 2194s Would take minimum 256.000000 bytes to make perfect hash. 2194s Hashing 1019.97 KB of sequence requires: 2194s ~ linear (in seq length) hashing cost of 2.74 MB 2194s ~ linear (in seq length) expected anchor cost of 24.54 MB 2194s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2194s Expected memory usage (without anchors): 2.74 MB 2194s Expected memory usage (with anchors): 27.28 MB 2194s Hash parameters computed in 3.027 seconds 2194s Creating storage structures: 16 entries in 256 bytes space. 2194s Storage structures created in: 0.002 seconds 2194s 2194s Hashing NZ_GG705058.fna forwards 2194s 0%......... (T -0.379 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 10%......... (T -0.345 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 20%......... (T -0.340 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 30%......... (T -0.327 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 40%......... (T -0.278 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 50%......... (T -0.219 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 60%......... (T -0.162 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 70%......... (T -0.107 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 80%......... (T -0.053 seconds) ETA: Fri Mar 15 08:59:05 2024 2194s 90%......... 2194s Hashing NZ_GG705058.fna backwards 2195s 0%......... (T -0.482 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 10%......... (T -0.436 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 20%......... (T -0.374 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 30%......... (T -0.321 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 40%......... (T -0.266 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 50%......... (T -0.214 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 60%......... (T -0.160 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 70%......... (T -0.107 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 80%......... (T -0.053 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 90%......... 2195s Hashing NZ_GG705058.gbk forwards 2195s 0%......... (T -0.488 seconds) ETA: Fri Mar 15 08:59:06 2024 2195s 10%......... (T -0.442 seconds) ETA: Fri Mar 15 08:59:07 2024 2195s 20%......... (T -0.428 seconds) ETA: Fri Mar 15 08:59:07 2024 2195s 30%......... (T -0.380 seconds) ETA: Fri Mar 15 08:59:07 2024 2195s 40%......... (T -0.315 seconds) ETA: Fri Mar 15 08:59:07 2024 2195s 50%......... (T -0.246 seconds) ETA: Fri Mar 15 08:59:07 2024 2195s 60%......... (T -0.184 seconds) ETA: Fri Mar 15 08:59:07 2024 2195s 70%......... (T -0.124 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 80%......... (T -0.062 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 90%......... 2196s Hashing NZ_GG705058.gbk backwards 2196s 0%......... (T -0.509 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 10%......... (T -0.447 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 20%......... (T -0.389 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 30%......... (T -0.336 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 40%......... (T -0.280 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 50%......... (T -0.225 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 60%......... (T -0.169 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 70%......... (T -0.113 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 80%......... (T -0.057 seconds) ETA: Fri Mar 15 08:59:07 2024 2196s 90%......... 2196s Initial hashing took: 2.255 seconds 2196s Extracting anchors from hash-space. 2197s (T -12.534 seconds) ETA: Fri Mar 15 08:59:20 2024 2200s 6%. (T -16.185 seconds) ETA: Fri Mar 15 08:59:27 2024 2201s 18%. (T -11.109 seconds) ETA: Fri Mar 15 08:59:23 2024 2203s 31%. (T -8.964 seconds) ETA: Fri Mar 15 08:59:23 2024 2204s 43%. (T -6.415 seconds) ETA: Fri Mar 15 08:59:22 2024 2206s 56%. (T -4.624 seconds) ETA: Fri Mar 15 08:59:22 2024 2207s 68%. (T -2.612 seconds) ETA: Fri Mar 15 08:59:21 2024 2210s 81%. (T -1.030 seconds) ETA: Fri Mar 15 08:59:22 2024 2211s 93%. 2211s Anchor extraction completed in: 14.672 seconds 2211s Total anchors: 0 2211s Anchor extraction + merge time: 14.675 seconds 2211s Total processing time: 20.363 seconds 2211s Writing anchors... 2211s Total seeds used in anchors: 16 2211s Hash performance: 2211s Keys used: 16 out of 16 possible (100.00%). 2211s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2211s Average pigeons per pigeon hole: 1 2214s Writing 16 repeats...Output writing finished in: 3.140 seconds 2214s Total time: 23.503 seconds 2214s Murasaki finished! 2214s PASSED MURASAKI 2214s 2214s Testing Genepare on NZ_GG705058.fna 2214s 1001 2214s PASSED GENEPARSE 2214s 2215s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2215s Testing mbfa on NZ_GG705058.fna 2215s PASSED mbfa 2215s 2215s Test Murasaki on NZ_GG705059.fna 2215s Verbosity level is: 0 2215s Writing to: output/test 2215s Pattern is: 101 2215s Max usable hash bits: 27 2215s Hit filter is: 0 2215s Hash table type is: EcoHash 2215s Hashing every: 1 base 2215s Histogram detail is: 0 2215s Hashing function is: 3 2215s Collision profiling is: disabled 2215s Repeats are: unmasked 2215s Mergefilter is at: 100 2215s Random seed: 1710493166 (automatic) 2215s Bitscore output: on 2215s Leave status records: no 2215s Join neighbors is: off 2215s Target memory is: 1.28 GB 2215s Retain members is: true 2215s Store repeatmap? yes 2215s Reverse complement data is generated on the fly 2215s Rifts allowed: 0 2215s Fuzzy Extension: yes 2215s Score by minimum pair: yes 2215s Gapped anchors: no 2215s Large sequence support is: enabled => seqpos is 8 bytes 2215s Murasaki version 1.68.6 (LARGESEQ) 2215s Loading NZ_GG705059.fna 2215s Read 254292bp (248.33 KBp) in 0.161 seconds (1.5 MBp/s) 2215s Done with forward strand (263842bp). Preparing reverse complement... 2215s <-> Reversing metdata. 2215s Done. 2215s Seq NZ_GG705059.fna loaded. 257.66 KB 2215s Loading NZ_GG705059.gbk 2216s Read 254292bp (248.33 KBp) in 0.223 seconds (1.1 MBp/s) 2216s Done with forward strand (263842bp). Preparing reverse complement... 2216s <-> Reversing metdata. 2216s Done. 2216s Seq NZ_GG705059.gbk loaded. 257.66 KB 2216s Sequence loading took: 0.389 seconds 2216s Forward frequencies: A:28.2899% C:22.6452% G:20.7128% T:28.3521% 2216s Global base frequencies: A/T:56.642% C/G:43.358% 2216s Pat: 3 bases long with weight 2 2216s 1 101 2216s Computing hash parameters... 2216s Using 4 hashbits 2216s 0%......... (T -1.899 seconds) ETA: Fri Mar 15 08:59:29 2024 2216s 10%......... (T -1.678 seconds) ETA: Fri Mar 15 08:59:29 2024 2216s 20%......... (T -1.471 seconds) ETA: Fri Mar 15 08:59:29 2024 2216s 30%......... (T -1.248 seconds) ETA: Fri Mar 15 08:59:29 2024 2217s 40%......... (T -1.031 seconds) ETA: Fri Mar 15 08:59:29 2024 2217s 50%......... (T -0.824 seconds) ETA: Fri Mar 15 08:59:29 2024 2217s 60%......... (T -0.615 seconds) ETA: Fri Mar 15 08:59:29 2024 2217s 70%......... (T -0.411 seconds) ETA: Fri Mar 15 08:59:29 2024 2217s 80%......... (T -0.184 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 91%........ 2218s Acceptable hash function found after 1000 cycles. 2218s Best uses 2/2 bases and has 0 empties from 2 inputs. 2218s Score: 0.96875 (cf. worst: -4.51562) 2218s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2218s Total correlation penalty: 0 2218s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2218s 10 2218s == 2218s w[ 0]>>29: -.C 2218s w[ 0]>>30: A.- 2218s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 2218s Ecolist (optimistic): Expcted entries per list: 16 2218s Ecolist (optimistic): Minimum chunks per list: 2 2218s Would take minimum 256.000000 bytes to make perfect hash. 2218s Hashing 993.33 KB of sequence requires: 2218s ~ linear (in seq length) hashing cost of 2.67 MB 2218s ~ linear (in seq length) expected anchor cost of 24.16 MB 2218s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2218s Expected memory usage (without anchors): 2.67 MB 2218s Expected memory usage (with anchors): 26.82 MB 2218s Hash parameters computed in 2.070 seconds 2218s Creating storage structures: 16 entries in 256 bytes space. 2218s Storage structures created in: 0.007 seconds 2218s 2218s Hashing NZ_GG705059.fna forwards 2218s 0%......... (T -0.414 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 10%......... (T -0.360 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 20%......... (T -0.319 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 30%......... (T -0.281 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 40%......... (T -0.238 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 50%......... (T -0.193 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 60%......... (T -0.146 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 70%......... (T -0.099 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 80%......... (T -0.050 seconds) ETA: Fri Mar 15 08:59:29 2024 2218s 90%......... 2218s Hashing NZ_GG705059.fna backwards 2218s 0%......... (T -0.485 seconds) ETA: Fri Mar 15 08:59:30 2024 2218s 10%......... (T -0.443 seconds) ETA: Fri Mar 15 08:59:30 2024 2218s 20%......... (T -0.388 seconds) ETA: Fri Mar 15 08:59:30 2024 2218s 30%......... (T -0.343 seconds) ETA: Fri Mar 15 08:59:30 2024 2219s 40%......... (T -0.285 seconds) ETA: Fri Mar 15 08:59:30 2024 2219s 50%......... (T -0.231 seconds) ETA: Fri Mar 15 08:59:30 2024 2219s 60%......... (T -0.206 seconds) ETA: Fri Mar 15 08:59:30 2024 2219s 70%......... (T -0.138 seconds) ETA: Fri Mar 15 08:59:30 2024 2219s 80%......... (T -0.070 seconds) ETA: Fri Mar 15 08:59:30 2024 2219s 90%......... 2219s Hashing NZ_GG705059.gbk forwards 2219s 0%......... (T -0.966 seconds) ETA: Fri Mar 15 08:59:31 2024 2219s 10%......... (T -0.688 seconds) ETA: Fri Mar 15 08:59:31 2024 2219s 20%......... (T -0.548 seconds) ETA: Fri Mar 15 08:59:31 2024 2219s 30%......... (T -0.438 seconds) ETA: Fri Mar 15 08:59:31 2024 2219s 40%......... (T -0.369 seconds) ETA: Fri Mar 15 08:59:31 2024 2219s 50%......... (T -0.291 seconds) ETA: Fri Mar 15 08:59:31 2024 2219s 60%......... (T -0.211 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 70%......... (T -0.137 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 80%......... (T -0.068 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 90%......... 2220s Hashing NZ_GG705059.gbk backwards 2220s 0%......... (T -0.568 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 10%......... (T -0.516 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 20%......... (T -0.457 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 30%......... (T -0.382 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 40%......... (T -0.310 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 50%......... (T -0.245 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 60%......... (T -0.183 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 70%......... (T -0.121 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 80%......... (T -0.060 seconds) ETA: Fri Mar 15 08:59:31 2024 2220s 90%......... 2220s Initial hashing took: 2.538 seconds 2220s Extracting anchors from hash-space. 2221s (T -13.037 seconds) ETA: Fri Mar 15 08:59:45 2024 2224s 6%. (T -17.151 seconds) ETA: Fri Mar 15 08:59:52 2024 2226s 18%. (T -12.872 seconds) ETA: Fri Mar 15 08:59:50 2024 2228s 31%. (T -9.659 seconds) ETA: Fri Mar 15 08:59:48 2024 2229s 43%. (T -6.648 seconds) ETA: Fri Mar 15 08:59:46 2024 2231s 56%. (T -4.997 seconds) ETA: Fri Mar 15 08:59:47 2024 2232s 68%. (T -2.852 seconds) ETA: Fri Mar 15 08:59:46 2024 2235s 81%. (T -1.093 seconds) ETA: Fri Mar 15 08:59:47 2024 2236s 93%. 2236s Anchor extraction completed in: 15.492 seconds 2236s Total anchors: 0 2236s Anchor extraction + merge time: 15.493 seconds 2236s Total processing time: 20.505 seconds 2236s Writing anchors... 2236s Total seeds used in anchors: 16 2236s Hash performance: 2236s Keys used: 16 out of 16 possible (100.00%). 2236s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2236s Average pigeons per pigeon hole: 1 2240s Writing 16 repeats...Output writing finished in: 3.980 seconds 2240s Total time: 24.484 seconds 2240s Murasaki finished! 2240s PASSED MURASAKI 2240s 2240s Testing Genepare on NZ_GG705059.fna 2240s 1001 2240s PASSED GENEPARSE 2240s 2241s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2241s Testing mbfa on NZ_GG705059.fna 2241s PASSED mbfa 2241s 2241s Test Murasaki on NZ_GG705060.fna 2241s Verbosity level is: 0 2241s Writing to: output/test 2241s Pattern is: 101 2241s Max usable hash bits: 27 2241s Hit filter is: 0 2241s Hash table type is: EcoHash 2241s Hashing every: 1 base 2241s Histogram detail is: 0 2241s Hashing function is: 3 2241s Collision profiling is: disabled 2241s Repeats are: unmasked 2241s Mergefilter is at: 100 2241s Random seed: 1710493192 (automatic) 2241s Bitscore output: on 2241s Leave status records: no 2241s Join neighbors is: off 2241s Target memory is: 1.28 GB 2241s Retain members is: true 2241s Store repeatmap? yes 2241s Reverse complement data is generated on the fly 2241s Rifts allowed: 0 2241s Fuzzy Extension: yes 2241s Score by minimum pair: yes 2241s Gapped anchors: no 2241s Large sequence support is: enabled => seqpos is 8 bytes 2241s Murasaki version 1.68.6 (LARGESEQ) 2241s Loading NZ_GG705060.fna 2242s Read 250160bp (244.30 KBp) in 0.160 seconds (1.5 MBp/s) 2242s Done with forward strand (261824bp). Preparing reverse complement... 2242s <-> Reversing metdata. 2242s Done. 2242s Seq NZ_GG705060.fna loaded. 255.69 KB 2242s Loading NZ_GG705060.gbk 2242s Read 250160bp (244.30 KBp) in 0.223 seconds (1.1 MBp/s) 2242s Done with forward strand (261824bp). Preparing reverse complement... 2242s <-> Reversing metdata. 2242s Done. 2242s Seq NZ_GG705060.gbk loaded. 255.69 KB 2242s Sequence loading took: 0.396 seconds 2242s Forward frequencies: A:28.3151% C:22.1794% G:20.8447% T:28.6609% 2242s Global base frequencies: A/T:56.9759% C/G:43.0241% 2242s Pat: 3 bases long with weight 2 2242s 1 101 2242s Computing hash parameters... 2242s Using 4 hashbits 2242s 0%......... (T -2.045 seconds) ETA: Fri Mar 15 08:59:55 2024 2242s 10%......... (T -1.984 seconds) ETA: Fri Mar 15 08:59:55 2024 2243s 20%......... (T -1.690 seconds) ETA: Fri Mar 15 08:59:55 2024 2243s 30%......... (T -1.434 seconds) ETA: Fri Mar 15 08:59:55 2024 2243s 40%......... (T -1.177 seconds) ETA: Fri Mar 15 08:59:55 2024 2243s 50%......... (T -0.970 seconds) ETA: Fri Mar 15 08:59:55 2024 2244s 60%......... (T -0.725 seconds) ETA: Fri Mar 15 08:59:55 2024 2244s 70%......... (T -0.505 seconds) ETA: Fri Mar 15 08:59:55 2024 2244s 80%......... (T -0.225 seconds) ETA: Fri Mar 15 08:59:55 2024 2244s 91%........ 2244s Acceptable hash function found after 1000 cycles. 2244s Best uses 2/2 bases and has 0 empties from 2 inputs. 2244s Score: 0.96875 (cf. worst: -4.51562) 2244s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2244s Total correlation penalty: 0 2244s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2244s 10 2244s == 2244s w[ 0]>>29: -.C 2244s w[ 0]>>30: A.- 2244s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 2244s Ecolist (optimistic): Expcted entries per list: 16 2244s Ecolist (optimistic): Minimum chunks per list: 3 2244s Would take minimum 256.000000 bytes to make perfect hash. 2244s Hashing 977.19 KB of sequence requires: 2244s ~ linear (in seq length) hashing cost of 2.50 MB 2244s ~ linear (in seq length) expected anchor cost of 23.97 MB 2244s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2244s Expected memory usage (without anchors): 2.51 MB 2244s Expected memory usage (with anchors): 26.48 MB 2244s Hash parameters computed in 2.580 seconds 2244s Creating storage structures: 16 entries in 256 bytes space. 2244s Storage structures created in: 0.009 seconds 2244s 2244s Hashing NZ_GG705060.fna forwards 2244s 0%......... (T -0.398 seconds) ETA: Fri Mar 15 08:59:56 2024 2244s 10%......... (T -0.408 seconds) ETA: Fri Mar 15 08:59:56 2024 2245s 20%......... (T -0.419 seconds) ETA: Fri Mar 15 08:59:56 2024 2245s 30%......... (T -0.362 seconds) ETA: Fri Mar 15 08:59:56 2024 2245s 40%......... (T -0.345 seconds) ETA: Fri Mar 15 08:59:56 2024 2245s 50%......... (T -0.287 seconds) ETA: Fri Mar 15 08:59:56 2024 2245s 60%......... (T -0.213 seconds) ETA: Fri Mar 15 08:59:56 2024 2245s 70%......... (T -0.160 seconds) ETA: Fri Mar 15 08:59:56 2024 2245s 80%......... (T -0.081 seconds) ETA: Fri Mar 15 08:59:56 2024 2245s 90%......... 2245s Hashing NZ_GG705060.fna backwards 2245s 0%......... (T -1.385 seconds) ETA: Fri Mar 15 08:59:58 2024 2245s 10%......... (T -0.882 seconds) ETA: Fri Mar 15 08:59:57 2024 2246s 20%......... (T -0.658 seconds) ETA: Fri Mar 15 08:59:57 2024 2246s 30%......... (T -0.513 seconds) ETA: Fri Mar 15 08:59:57 2024 2246s 40%......... (T -0.426 seconds) ETA: Fri Mar 15 08:59:57 2024 2246s 50%......... (T -0.319 seconds) ETA: Fri Mar 15 08:59:57 2024 2246s 60%......... (T -0.233 seconds) ETA: Fri Mar 15 08:59:57 2024 2246s 70%......... (T -0.151 seconds) ETA: Fri Mar 15 08:59:57 2024 2246s 80%......... (T -0.074 seconds) ETA: Fri Mar 15 08:59:57 2024 2246s 90%......... 2246s Hashing NZ_GG705060.gbk forwards 2246s 0%......... (T -0.567 seconds) ETA: Fri Mar 15 08:59:58 2024 2246s 10%......... (T -0.483 seconds) ETA: Fri Mar 15 08:59:58 2024 2246s 20%......... (T -0.434 seconds) ETA: Fri Mar 15 08:59:58 2024 2246s 30%......... (T -0.397 seconds) ETA: Fri Mar 15 08:59:58 2024 2246s 40%......... (T -0.345 seconds) ETA: Fri Mar 15 08:59:58 2024 2246s 50%......... (T -0.270 seconds) ETA: Fri Mar 15 08:59:58 2024 2246s 60%......... (T -0.219 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 70%......... (T -0.144 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 80%......... (T -0.070 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 90%......... 2247s Hashing NZ_GG705060.gbk backwards 2247s 0%......... (T -0.616 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 10%......... (T -0.578 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 20%......... (T -0.487 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 30%......... (T -0.401 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 40%......... (T -0.342 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 50%......... (T -0.289 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 60%......... (T -0.220 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 70%......... (T -0.154 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 80%......... (T -0.078 seconds) ETA: Fri Mar 15 08:59:58 2024 2247s 90%......... 2247s Initial hashing took: 3.078 seconds 2247s Extracting anchors from hash-space. 2249s (T -31.707 seconds) ETA: Fri Mar 15 09:00:32 2024 2251s 6%. (T -18.114 seconds) ETA: Fri Mar 15 09:00:21 2024 2253s 18%. (T -12.795 seconds) ETA: Fri Mar 15 09:00:17 2024 2255s 31%. (T -10.261 seconds) ETA: Fri Mar 15 09:00:16 2024 2257s 43%. (T -7.508 seconds) ETA: Fri Mar 15 09:00:15 2024 2258s 56%. (T -5.010 seconds) ETA: Fri Mar 15 09:00:14 2024 2261s 68%. (T -3.098 seconds) ETA: Fri Mar 15 09:00:15 2024 2262s 81%. (T -1.085 seconds) ETA: Fri Mar 15 09:00:14 2024 2263s 93%. 2263s Anchor extraction completed in: 15.378 seconds 2263s Total anchors: 0 2263s Anchor extraction + merge time: 15.378 seconds 2263s Total processing time: 21.455 seconds 2263s Writing anchors... 2263s Total seeds used in anchors: 16 2263s Hash performance: 2263s Keys used: 16 out of 16 possible (100.00%). 2263s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2263s Average pigeons per pigeon hole: 1 2268s Writing 16 repeats...Output writing finished in: 4.961 seconds 2268s Total time: 26.416 seconds 2268s Murasaki finished! 2268s PASSED MURASAKI 2268s 2268s Testing Genepare on NZ_GG705060.fna 2268s 1001 2268s PASSED GENEPARSE 2268s 2269s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2269s Testing mbfa on NZ_GG705060.fna 2270s PASSED mbfa 2270s 2270s Test Murasaki on NZ_GG705061.fna 2270s Verbosity level is: 0 2270s Writing to: output/test 2270s Pattern is: 101 2270s Max usable hash bits: 27 2270s Hit filter is: 0 2270s Hash table type is: EcoHash 2270s Hashing every: 1 base 2270s Histogram detail is: 0 2270s Hashing function is: 3 2270s Collision profiling is: disabled 2270s Repeats are: unmasked 2270s Mergefilter is at: 100 2270s Random seed: 1710493221 (automatic) 2270s Bitscore output: on 2270s Leave status records: no 2270s Join neighbors is: off 2270s Target memory is: 1.28 GB 2270s Retain members is: true 2270s Store repeatmap? yes 2270s Reverse complement data is generated on the fly 2270s Rifts allowed: 0 2270s Fuzzy Extension: yes 2270s Score by minimum pair: yes 2270s Gapped anchors: no 2270s Large sequence support is: enabled => seqpos is 8 bytes 2270s Murasaki version 1.68.6 (LARGESEQ) 2270s Loading NZ_GG705061.fna 2270s Read 229103bp (223.73 KBp) in 0.144 seconds (1.5 MBp/s) 2270s Done with forward strand (233240bp). Preparing reverse complement... 2270s <-> Reversing metdata. 2270s Done. 2270s Seq NZ_GG705061.fna loaded. 227.77 KB 2270s Loading NZ_GG705061.gbk 2270s Read 229103bp (223.73 KBp) in 0.256 seconds (874.7 KBp/s) 2270s Done with forward strand (233240bp). Preparing reverse complement... 2270s <-> Reversing metdata. 2270s Done. 2270s Seq NZ_GG705061.gbk loaded. 227.77 KB 2270s Sequence loading took: 0.437 seconds 2270s Forward frequencies: A:28.2371% C:22.8212% G:21.0028% T:27.939% 2270s Global base frequencies: A/T:56.176% C/G:43.824% 2270s Pat: 3 bases long with weight 2 2270s 1 101 2270s Computing hash parameters... 2270s Using 4 hashbits 2271s 0%......... (T -2.647 seconds) ETA: Fri Mar 15 09:00:24 2024 2271s 10%......... (T -3.608 seconds) ETA: Fri Mar 15 09:00:26 2024 2272s 20%......... (T -3.093 seconds) ETA: Fri Mar 15 09:00:26 2024 2272s 30%......... (T -2.427 seconds) ETA: Fri Mar 15 09:00:25 2024 2272s 40%......... (T -2.031 seconds) ETA: Fri Mar 15 09:00:25 2024 2273s 50%......... (T -1.511 seconds) ETA: Fri Mar 15 09:00:25 2024 2273s 60%......... (T -1.071 seconds) ETA: Fri Mar 15 09:00:25 2024 2273s 70%......... (T -0.698 seconds) ETA: Fri Mar 15 09:00:25 2024 2273s 80%......... (T -0.305 seconds) ETA: Fri Mar 15 09:00:25 2024 2274s 91%........ 2274s Acceptable hash function found after 1000 cycles. 2274s Best uses 2/2 bases and has 0 empties from 2 inputs. 2274s Score: 0.96875 (cf. worst: -4.51562) 2274s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2274s Total correlation penalty: 0 2274s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2274s 10 2274s == 2274s w[ 0]>>29: -.C 2274s w[ 0]>>30: A.- 2274s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 2274s Ecolist (optimistic): Expcted entries per list: 16 2274s Ecolist (optimistic): Minimum chunks per list: 3 2274s Would take minimum 256.000000 bytes to make perfect hash. 2274s Hashing 894.93 KB of sequence requires: 2274s ~ linear (in seq length) hashing cost of 2.29 MB 2274s ~ linear (in seq length) expected anchor cost of 21.35 MB 2274s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2274s Expected memory usage (without anchors): 2.29 MB 2274s Expected memory usage (with anchors): 23.65 MB 2274s Hash parameters computed in 3.455 seconds 2274s Creating storage structures: 16 entries in 256 bytes space. 2274s Storage structures created in: 0.007 seconds 2274s 2274s Hashing NZ_GG705061.fna forwards 2274s 0%......... (T -1.096 seconds) ETA: Fri Mar 15 09:00:26 2024 2274s 10%......... (T -0.662 seconds) ETA: Fri Mar 15 09:00:25 2024 2274s 20%......... (T -0.528 seconds) ETA: Fri Mar 15 09:00:25 2024 2274s 30%......... (T -0.538 seconds) ETA: Fri Mar 15 09:00:26 2024 2274s 40%......... (T -0.478 seconds) ETA: Fri Mar 15 09:00:26 2024 2274s 50%......... (T -0.348 seconds) ETA: Fri Mar 15 09:00:26 2024 2274s 60%......... (T -0.247 seconds) ETA: Fri Mar 15 09:00:25 2024 2274s 70%......... (T -0.162 seconds) ETA: Fri Mar 15 09:00:25 2024 2274s 80%......... (T -0.078 seconds) ETA: Fri Mar 15 09:00:25 2024 2274s 90%......... 2274s Hashing NZ_GG705061.fna backwards 2275s 0%......... (T -0.588 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 10%......... (T -0.505 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 20%......... (T -0.435 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 30%......... (T -0.501 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 40%......... (T -0.429 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 50%......... (T -0.325 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 60%......... (T -0.239 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 70%......... (T -0.152 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 80%......... (T -0.073 seconds) ETA: Fri Mar 15 09:00:26 2024 2275s 90%......... 2275s Hashing NZ_GG705061.gbk forwards 2275s 0%......... (T -0.608 seconds) ETA: Fri Mar 15 09:00:27 2024 2275s 10%......... (T -0.496 seconds) ETA: Fri Mar 15 09:00:27 2024 2275s 20%......... (T -0.589 seconds) ETA: Fri Mar 15 09:00:27 2024 2276s 30%......... (T -0.519 seconds) ETA: Fri Mar 15 09:00:27 2024 2276s 40%......... (T -0.426 seconds) ETA: Fri Mar 15 09:00:27 2024 2276s 50%......... (T -0.319 seconds) ETA: Fri Mar 15 09:00:27 2024 2276s 60%......... (T -0.246 seconds) ETA: Fri Mar 15 09:00:27 2024 2276s 70%......... (T -0.182 seconds) ETA: Fri Mar 15 09:00:27 2024 2276s 80%......... (T -0.087 seconds) ETA: Fri Mar 15 09:00:27 2024 2276s 90%......... 2276s Hashing NZ_GG705061.gbk backwards 2276s 0%......... (T -0.488 seconds) ETA: Fri Mar 15 09:00:28 2024 2276s 10%......... (T -0.498 seconds) ETA: Fri Mar 15 09:00:28 2024 2276s 20%......... (T -0.443 seconds) ETA: Fri Mar 15 09:00:28 2024 2276s 30%......... (T -0.435 seconds) ETA: Fri Mar 15 09:00:28 2024 2277s 40%......... (T -0.446 seconds) ETA: Fri Mar 15 09:00:28 2024 2277s 50%......... (T -0.332 seconds) ETA: Fri Mar 15 09:00:28 2024 2277s 60%......... (T -0.257 seconds) ETA: Fri Mar 15 09:00:28 2024 2277s 70%......... (T -0.166 seconds) ETA: Fri Mar 15 09:00:28 2024 2277s 80%......... (T -0.087 seconds) ETA: Fri Mar 15 09:00:28 2024 2277s 90%......... 2277s Initial hashing took: 3.298 seconds 2277s Extracting anchors from hash-space. 2280s (T -53.929 seconds) ETA: Fri Mar 15 09:01:25 2024 2284s 6%. (T -33.716 seconds) ETA: Fri Mar 15 09:01:09 2024 2287s 18%. (T -23.012 seconds) ETA: Fri Mar 15 09:01:01 2024 2290s 31%. (T -17.397 seconds) ETA: Fri Mar 15 09:00:58 2024 2293s 43%. (T -12.291 seconds) ETA: Fri Mar 15 09:00:56 2024 2294s 56%. (T -7.981 seconds) ETA: Fri Mar 15 09:00:53 2024 2297s 68%. (T -4.766 seconds) ETA: Fri Mar 15 09:00:53 2024 2299s 81%. (T -1.669 seconds) ETA: Fri Mar 15 09:00:52 2024 2301s 93%. 2301s Anchor extraction completed in: 23.653 seconds 2301s Total anchors: 0 2301s Anchor extraction + merge time: 23.654 seconds 2301s Total processing time: 30.867 seconds 2301s Writing anchors... 2301s Total seeds used in anchors: 16 2301s Hash performance: 2301s Keys used: 16 out of 16 possible (100.00%). 2301s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2301s Average pigeons per pigeon hole: 1 2307s Writing 16 repeats...Output writing finished in: 6.000 seconds 2307s Total time: 36.867 seconds 2307s Murasaki finished! 2307s PASSED MURASAKI 2307s 2307s Testing Genepare on NZ_GG705061.fna 2308s 1001 2308s PASSED GENEPARSE 2308s 2309s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2309s Testing mbfa on NZ_GG705061.fna 2309s PASSED mbfa 2309s 2309s Test Murasaki on NZ_GG705062.fna 2310s Verbosity level is: 0 2310s Writing to: output/test 2310s Pattern is: 101 2310s Max usable hash bits: 27 2310s Hit filter is: 0 2310s Hash table type is: EcoHash 2310s Hashing every: 1 base 2310s Histogram detail is: 0 2310s Hashing function is: 3 2310s Collision profiling is: disabled 2310s Repeats are: unmasked 2310s Mergefilter is at: 100 2310s Random seed: 1710493260 (automatic) 2310s Bitscore output: on 2310s Leave status records: no 2310s Join neighbors is: off 2310s Target memory is: 1.28 GB 2310s Retain members is: true 2310s Store repeatmap? yes 2310s Reverse complement data is generated on the fly 2310s Rifts allowed: 0 2310s Fuzzy Extension: yes 2310s Score by minimum pair: yes 2310s Gapped anchors: no 2310s Large sequence support is: enabled => seqpos is 8 bytes 2310s Murasaki version 1.68.6 (LARGESEQ) 2310s Loading NZ_GG705062.fna 2310s Read 174324bp (170.24 KBp) in 0.451 seconds (377.8 KBp/s) 2310s Done with forward strand (181688bp). Preparing reverse complement... 2310s <-> Reversing metdata. 2310s Done. 2310s Seq NZ_GG705062.fna loaded. 177.43 KB 2310s Loading NZ_GG705062.gbk 2311s Read 174324bp (170.24 KBp) in 0.623 seconds (273.1 KBp/s) 2311s Done with forward strand (181688bp). Preparing reverse complement... 2311s <-> Reversing metdata. 2311s Done. 2311s Seq NZ_GG705062.gbk loaded. 177.43 KB 2311s Sequence loading took: 1.113 seconds 2311s Forward frequencies: A:28.8004% C:19.6749% G:21.6212% T:29.9035% 2311s Global base frequencies: A/T:58.7039% C/G:41.2961% 2311s Pat: 3 bases long with weight 2 2311s 1 101 2311s Computing hash parameters... 2311s Using 4 hashbits 2311s 0%......... (T -4.606 seconds) ETA: Fri Mar 15 09:01:07 2024 2312s 10%......... (T -4.570 seconds) ETA: Fri Mar 15 09:01:07 2024 2312s 20%......... (T -3.699 seconds) ETA: Fri Mar 15 09:01:07 2024 2313s 30%......... (T -2.712 seconds) ETA: Fri Mar 15 09:01:06 2024 2313s 40%......... (T -2.061 seconds) ETA: Fri Mar 15 09:01:06 2024 2313s 50%......... (T -1.665 seconds) ETA: Fri Mar 15 09:01:06 2024 2313s 60%......... (T -1.167 seconds) ETA: Fri Mar 15 09:01:06 2024 2314s 70%......... (T -0.755 seconds) ETA: Fri Mar 15 09:01:05 2024 2315s 80%......... (T -0.385 seconds) ETA: Fri Mar 15 09:01:06 2024 2315s 91%........ 2315s Acceptable hash function found after 1000 cycles. 2315s Best uses 2/2 bases and has 0 empties from 2 inputs. 2315s Score: 0.96875 (cf. worst: -4.51562) 2315s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2315s Total correlation penalty: 0 2315s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2315s 10 2315s == 2315s w[ 0]>>29: -.C 2315s w[ 0]>>30: A.- 2315s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 2315s Ecolist (optimistic): Expcted entries per list: 16 2315s Ecolist (optimistic): Minimum chunks per list: 3 2315s Would take minimum 256.000000 bytes to make perfect hash. 2315s Hashing 680.95 KB of sequence requires: 2315s ~ linear (in seq length) hashing cost of 1.75 MB 2315s ~ linear (in seq length) expected anchor cost of 16.63 MB 2315s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2315s Expected memory usage (without anchors): 1.75 MB 2315s Expected memory usage (with anchors): 18.38 MB 2315s Hash parameters computed in 4.504 seconds 2315s Creating storage structures: 16 entries in 256 bytes space. 2315s Storage structures created in: 0.015 seconds 2315s 2315s Hashing NZ_GG705062.fna forwards 2315s 0%......... (T -0.326 seconds) ETA: Fri Mar 15 09:01:07 2024 2315s 10%......... (T -0.288 seconds) ETA: Fri Mar 15 09:01:07 2024 2315s 20%......... (T -0.282 seconds) ETA: Fri Mar 15 09:01:07 2024 2315s 30%......... (T -0.331 seconds) ETA: Fri Mar 15 09:01:07 2024 2316s 40%......... (T -0.305 seconds) ETA: Fri Mar 15 09:01:07 2024 2316s 50%......... (T -0.302 seconds) ETA: Fri Mar 15 09:01:07 2024 2316s 60%......... (T -0.227 seconds) ETA: Fri Mar 15 09:01:07 2024 2316s 70%......... (T -0.186 seconds) ETA: Fri Mar 15 09:01:07 2024 2316s 80%......... (T -0.112 seconds) ETA: Fri Mar 15 09:01:07 2024 2316s 90%......... 2316s Hashing NZ_GG705062.fna backwards 2317s 0%......... (T -3.329 seconds) ETA: Fri Mar 15 09:01:11 2024 2317s 10%......... (T -2.215 seconds) ETA: Fri Mar 15 09:01:10 2024 2317s 20%......... (T -1.392 seconds) ETA: Fri Mar 15 09:01:09 2024 2317s 30%......... (T -1.099 seconds) ETA: Fri Mar 15 09:01:09 2024 2317s 40%......... (T -0.951 seconds) ETA: Fri Mar 15 09:01:09 2024 2317s 50%......... (T -0.699 seconds) ETA: Fri Mar 15 09:01:09 2024 2318s 60%......... (T -0.500 seconds) ETA: Fri Mar 15 09:01:09 2024 2318s 70%......... (T -0.308 seconds) ETA: Fri Mar 15 09:01:09 2024 2318s 80%......... (T -0.150 seconds) ETA: Fri Mar 15 09:01:09 2024 2318s 90%......... 2318s Hashing NZ_GG705062.gbk forwards 2318s 0%......... (T -1.768 seconds) ETA: Fri Mar 15 09:01:11 2024 2318s 10%......... (T -1.189 seconds) ETA: Fri Mar 15 09:01:10 2024 2318s 20%......... (T -1.019 seconds) ETA: Fri Mar 15 09:01:10 2024 2318s 30%......... (T -0.820 seconds) ETA: Fri Mar 15 09:01:10 2024 2319s 40%......... (T -0.749 seconds) ETA: Fri Mar 15 09:01:10 2024 2319s 50%......... (T -0.653 seconds) ETA: Fri Mar 15 09:01:10 2024 2319s 60%......... (T -0.581 seconds) ETA: Fri Mar 15 09:01:11 2024 2319s 70%......... (T -0.389 seconds) ETA: Fri Mar 15 09:01:11 2024 2320s 80%......... (T -0.193 seconds) ETA: Fri Mar 15 09:01:11 2024 2320s 90%......... 2320s Hashing NZ_GG705062.gbk backwards 2320s 0%......... (T -1.740 seconds) ETA: Fri Mar 15 09:01:13 2024 2320s 10%......... (T -1.301 seconds) ETA: Fri Mar 15 09:01:12 2024 2320s 20%......... (T -1.020 seconds) ETA: Fri Mar 15 09:01:12 2024 2320s 30%......... (T -0.939 seconds) ETA: Fri Mar 15 09:01:12 2024 2321s 40%......... (T -0.746 seconds) ETA: Fri Mar 15 09:01:12 2024 2321s 50%......... (T -0.747 seconds) ETA: Fri Mar 15 09:01:13 2024 2321s 60%......... (T -0.524 seconds) ETA: Fri Mar 15 09:01:13 2024 2321s 70%......... (T -0.321 seconds) ETA: Fri Mar 15 09:01:12 2024 2321s 80%......... (T -0.164 seconds) ETA: Fri Mar 15 09:01:12 2024 2322s 90%......... 2322s Initial hashing took: 6.384 seconds 2322s Extracting anchors from hash-space. 2323s (T -22.829 seconds) ETA: Fri Mar 15 09:01:37 2024 2328s 6%. (T -26.919 seconds) ETA: Fri Mar 15 09:01:45 2024 2330s 18%. (T -19.136 seconds) ETA: Fri Mar 15 09:01:40 2024 2332s 31%. (T -14.437 seconds) ETA: Fri Mar 15 09:01:38 2024 2335s 43%. (T -10.229 seconds) ETA: Fri Mar 15 09:01:36 2024 2337s 56%. (T -7.092 seconds) ETA: Fri Mar 15 09:01:35 2024 2339s 68%. (T -4.138 seconds) ETA: Fri Mar 15 09:01:34 2024 2344s 81%. (T -1.683 seconds) ETA: Fri Mar 15 09:01:37 2024 2346s 93%. 2346s Anchor extraction completed in: 23.960 seconds 2346s Total anchors: 0 2346s Anchor extraction + merge time: 23.960 seconds 2346s Total processing time: 35.994 seconds 2346s Writing anchors... 2346s Total seeds used in anchors: 16 2346s Hash performance: 2346s Keys used: 16 out of 16 possible (100.00%). 2346s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2346s Average pigeons per pigeon hole: 1 2350s Writing 16 repeats...Output writing finished in: 4.172 seconds 2350s Total time: 40.166 seconds 2350s Murasaki finished! 2350s PASSED MURASAKI 2350s 2350s Testing Genepare on NZ_GG705062.fna 2350s 1001 2350s PASSED GENEPARSE 2350s 2351s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2352s Testing mbfa on NZ_GG705062.fna 2352s PASSED mbfa 2352s 2352s Test Murasaki on NZ_GG705063.fna 2352s Verbosity level is: 0 2352s Writing to: output/test 2352s Pattern is: 101 2352s Max usable hash bits: 27 2352s Hit filter is: 0 2352s Hash table type is: EcoHash 2352s Hashing every: 1 base 2352s Histogram detail is: 0 2352s Hashing function is: 3 2352s Collision profiling is: disabled 2352s Repeats are: unmasked 2352s Mergefilter is at: 100 2352s Random seed: 1710493303 (automatic) 2352s Bitscore output: on 2352s Leave status records: no 2352s Join neighbors is: off 2352s Target memory is: 1.28 GB 2352s Retain members is: true 2352s Store repeatmap? yes 2352s Reverse complement data is generated on the fly 2352s Rifts allowed: 0 2352s Fuzzy Extension: yes 2352s Score by minimum pair: yes 2352s Gapped anchors: no 2352s Large sequence support is: enabled => seqpos is 8 bytes 2352s Murasaki version 1.68.6 (LARGESEQ) 2352s Loading NZ_GG705063.fna 2352s Read 169631bp (165.66 KBp) in 0.143 seconds (1.1 MBp/s) 2352s Done with forward strand (171684bp). Preparing reverse complement... 2352s <-> Reversing metdata. 2352s Done. 2352s Seq NZ_GG705063.fna loaded. 167.66 KB 2352s Loading NZ_GG705063.gbk 2353s Read 169631bp (165.66 KBp) in 0.383 seconds (432.2 KBp/s) 2353s Done with forward strand (171684bp). Preparing reverse complement... 2353s <-> Reversing metdata. 2353s Done. 2353s Seq NZ_GG705063.gbk loaded. 167.66 KB 2353s Sequence loading took: 0.546 seconds 2353s Forward frequencies: A:27.9294% C:20.6572% G:23.2847% T:28.1287% 2353s Global base frequencies: A/T:56.0581% C/G:43.9419% 2353s Pat: 3 bases long with weight 2 2353s 1 101 2353s Computing hash parameters... 2353s Using 4 hashbits 2353s 0%......... (T -4.028 seconds) ETA: Fri Mar 15 09:01:48 2024 2354s 10%......... (T -3.558 seconds) ETA: Fri Mar 15 09:01:48 2024 2354s 20%......... (T -2.794 seconds) ETA: Fri Mar 15 09:01:48 2024 2354s 30%......... (T -2.274 seconds) ETA: Fri Mar 15 09:01:47 2024 2355s 40%......... (T -1.857 seconds) ETA: Fri Mar 15 09:01:47 2024 2355s 50%......... (T -1.614 seconds) ETA: Fri Mar 15 09:01:48 2024 2356s 60%......... (T -1.327 seconds) ETA: Fri Mar 15 09:01:48 2024 2356s 70%......... (T -0.909 seconds) ETA: Fri Mar 15 09:01:48 2024 2357s 80%......... (T -0.413 seconds) ETA: Fri Mar 15 09:01:48 2024 2357s 91%........ 2357s Acceptable hash function found after 1000 cycles. 2357s Best uses 2/2 bases and has 0 empties from 2 inputs. 2357s Score: 0.96875 (cf. worst: -4.51562) 2357s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2357s Total correlation penalty: 0 2357s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2357s 10 2357s == 2357s w[ 0]>>29: -.C 2357s w[ 0]>>30: A.- 2357s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 2357s Ecolist (optimistic): Expcted entries per list: 16 2357s Ecolist (optimistic): Minimum chunks per list: 3 2357s Would take minimum 256.000000 bytes to make perfect hash. 2357s Hashing 662.62 KB of sequence requires: 2357s ~ linear (in seq length) hashing cost of 1.70 MB 2357s ~ linear (in seq length) expected anchor cost of 15.72 MB 2357s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2357s Expected memory usage (without anchors): 1.70 MB 2357s Expected memory usage (with anchors): 17.42 MB 2357s Hash parameters computed in 4.608 seconds 2357s Creating storage structures: 16 entries in 256 bytes space. 2357s Storage structures created in: 0.002 seconds 2357s 2357s Hashing NZ_GG705063.fna forwards 2357s 0%......... (T -1.005 seconds) ETA: Fri Mar 15 09:01:49 2024 2358s 10%......... (T -1.170 seconds) ETA: Fri Mar 15 09:01:50 2024 2358s 20%......... (T -0.820 seconds) ETA: Fri Mar 15 09:01:49 2024 2358s 30%......... (T -0.595 seconds) ETA: Fri Mar 15 09:01:49 2024 2358s 40%......... (T -0.442 seconds) ETA: Fri Mar 15 09:01:49 2024 2358s 50%......... (T -0.329 seconds) ETA: Fri Mar 15 09:01:49 2024 2358s 60%......... (T -0.234 seconds) ETA: Fri Mar 15 09:01:49 2024 2358s 70%......... (T -0.149 seconds) ETA: Fri Mar 15 09:01:49 2024 2358s 80%......... (T -0.072 seconds) ETA: Fri Mar 15 09:01:49 2024 2358s 90%......... 2358s Hashing NZ_GG705063.fna backwards 2358s 0%......... (T -0.479 seconds) ETA: Fri Mar 15 09:01:50 2024 2358s 10%......... (T -0.414 seconds) ETA: Fri Mar 15 09:01:50 2024 2358s 20%......... (T -0.371 seconds) ETA: Fri Mar 15 09:01:50 2024 2358s 30%......... (T -0.369 seconds) ETA: Fri Mar 15 09:01:50 2024 2358s 40%......... (T -0.391 seconds) ETA: Fri Mar 15 09:01:50 2024 2359s 50%......... (T -0.350 seconds) ETA: Fri Mar 15 09:01:50 2024 2359s 60%......... (T -0.348 seconds) ETA: Fri Mar 15 09:01:50 2024 2359s 70%......... (T -0.223 seconds) ETA: Fri Mar 15 09:01:50 2024 2359s 80%......... (T -0.107 seconds) ETA: Fri Mar 15 09:01:50 2024 2359s 90%......... 2359s Hashing NZ_GG705063.gbk forwards 2359s 0%......... (T -0.993 seconds) ETA: Fri Mar 15 09:01:51 2024 2359s 10%......... (T -0.766 seconds) ETA: Fri Mar 15 09:01:51 2024 2359s 20%......... (T -0.630 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 30%......... (T -0.622 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 40%......... (T -0.482 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 50%......... (T -0.350 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 60%......... (T -0.246 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 70%......... (T -0.156 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 80%......... (T -0.074 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 90%......... 2360s Hashing NZ_GG705063.gbk backwards 2360s 0%......... (T -0.392 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 10%......... (T -0.348 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 20%......... (T -0.313 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 30%......... (T -0.265 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 40%......... (T -0.227 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 50%......... (T -0.183 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 60%......... (T -0.139 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 70%......... (T -0.093 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 80%......... (T -0.047 seconds) ETA: Fri Mar 15 09:01:51 2024 2360s 90%......... 2360s Initial hashing took: 2.958 seconds 2360s Extracting anchors from hash-space. 2361s (T -8.504 seconds) ETA: Fri Mar 15 09:02:00 2024 2362s 6%. (T -9.971 seconds) ETA: Fri Mar 15 09:02:03 2024 2364s 18%. (T -8.522 seconds) ETA: Fri Mar 15 09:02:04 2024 2366s 31%. (T -7.920 seconds) ETA: Fri Mar 15 09:02:05 2024 2367s 43%. (T -5.392 seconds) ETA: Fri Mar 15 09:02:03 2024 2369s 56%. (T -4.333 seconds) ETA: Fri Mar 15 09:02:05 2024 2372s 68%. (T -2.703 seconds) ETA: Fri Mar 15 09:02:05 2024 2374s 81%. (T -1.029 seconds) ETA: Fri Mar 15 09:02:06 2024 2375s 93%. 2375s Anchor extraction completed in: 14.338 seconds 2375s Total anchors: 0 2375s Anchor extraction + merge time: 14.342 seconds 2375s Total processing time: 22.490 seconds 2375s Writing anchors... 2375s Total seeds used in anchors: 16 2375s Hash performance: 2375s Keys used: 16 out of 16 possible (100.00%). 2375s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2375s Average pigeons per pigeon hole: 1 2377s Writing 16 repeats...Output writing finished in: 2.361 seconds 2377s Total time: 24.851 seconds 2377s Murasaki finished! 2377s PASSED MURASAKI 2377s 2377s Testing Genepare on NZ_GG705063.fna 2377s 1001 2377s PASSED GENEPARSE 2377s 2379s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2379s Testing mbfa on NZ_GG705063.fna 2380s PASSED mbfa 2380s 2380s Test Murasaki on NZ_GG705064.fna 2380s Verbosity level is: 0 2380s Writing to: output/test 2380s Pattern is: 101 2380s Max usable hash bits: 27 2380s Hit filter is: 0 2380s Hash table type is: EcoHash 2380s Hashing every: 1 base 2380s Histogram detail is: 0 2380s Hashing function is: 3 2380s Collision profiling is: disabled 2380s Repeats are: unmasked 2380s Mergefilter is at: 100 2380s Random seed: 1710493331 (automatic) 2380s Bitscore output: on 2380s Leave status records: no 2380s Join neighbors is: off 2380s Target memory is: 1.28 GB 2380s Retain members is: true 2380s Store repeatmap? yes 2380s Reverse complement data is generated on the fly 2380s Rifts allowed: 0 2380s Fuzzy Extension: yes 2380s Score by minimum pair: yes 2380s Gapped anchors: no 2380s Large sequence support is: enabled => seqpos is 8 bytes 2380s Murasaki version 1.68.6 (LARGESEQ) 2380s Loading NZ_GG705064.fna 2380s Read 165027bp (161.16 KBp) in 0.188 seconds (856.2 KBp/s) 2380s Done with forward strand (167894bp). Preparing reverse complement... 2380s <-> Reversing metdata. 2380s Done. 2380s Seq NZ_GG705064.fna loaded. 163.96 KB 2380s Loading NZ_GG705064.gbk 2380s Read 165027bp (161.16 KBp) in 0.494 seconds (326.3 KBp/s) 2380s Done with forward strand (167894bp). Preparing reverse complement... 2380s <-> Reversing metdata. 2380s Done. 2380s Seq NZ_GG705064.gbk loaded. 163.96 KB 2380s Sequence loading took: 0.733 seconds 2380s Forward frequencies: A:27.6058% C:21.1172% G:23.1338% T:28.1433% 2380s Global base frequencies: A/T:55.7491% C/G:44.2509% 2380s Pat: 3 bases long with weight 2 2380s 1 101 2380s Computing hash parameters... 2380s Using 4 hashbits 2381s 0%......... (T -3.889 seconds) ETA: Fri Mar 15 09:02:16 2024 2381s 10%......... (T -3.644 seconds) ETA: Fri Mar 15 09:02:16 2024 2382s 20%......... (T -2.860 seconds) ETA: Fri Mar 15 09:02:16 2024 2382s 30%......... (T -2.284 seconds) ETA: Fri Mar 15 09:02:15 2024 2383s 40%......... (T -2.144 seconds) ETA: Fri Mar 15 09:02:16 2024 2383s 50%......... (T -1.601 seconds) ETA: Fri Mar 15 09:02:15 2024 2384s 60%......... (T -1.313 seconds) ETA: Fri Mar 15 09:02:16 2024 2384s 70%......... (T -0.916 seconds) ETA: Fri Mar 15 09:02:16 2024 2385s 80%......... (T -0.399 seconds) ETA: Fri Mar 15 09:02:16 2024 2385s 91%........ 2385s Acceptable hash function found after 1000 cycles. 2385s Best uses 2/2 bases and has 0 empties from 2 inputs. 2385s Score: 0.96875 (cf. worst: -4.51562) 2385s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2385s Total correlation penalty: 0 2385s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2385s 10 2385s == 2385s w[ 0]>>29: -.C 2385s w[ 0]>>30: A.- 2385s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 2385s Ecolist (optimistic): Expcted entries per list: 16 2385s Ecolist (optimistic): Minimum chunks per list: 3 2385s Would take minimum 256.000000 bytes to make perfect hash. 2385s Hashing 644.64 KB of sequence requires: 2385s ~ linear (in seq length) hashing cost of 1.65 MB 2385s ~ linear (in seq length) expected anchor cost of 15.37 MB 2385s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2385s Expected memory usage (without anchors): 1.65 MB 2385s Expected memory usage (with anchors): 17.02 MB 2385s Hash parameters computed in 4.474 seconds 2385s Creating storage structures: 16 entries in 256 bytes space. 2385s Storage structures created in: 0.011 seconds 2385s 2385s Hashing NZ_GG705064.fna forwards 2385s 0%......... (T -0.463 seconds) ETA: Fri Mar 15 09:02:16 2024 2385s 10%......... (T -0.547 seconds) ETA: Fri Mar 15 09:02:17 2024 2385s 20%......... (T -0.589 seconds) ETA: Fri Mar 15 09:02:17 2024 2385s 30%......... (T -0.456 seconds) ETA: Fri Mar 15 09:02:17 2024 2385s 40%......... (T -0.379 seconds) ETA: Fri Mar 15 09:02:17 2024 2385s 50%......... (T -0.318 seconds) ETA: Fri Mar 15 09:02:17 2024 2385s 60%......... (T -0.224 seconds) ETA: Fri Mar 15 09:02:17 2024 2386s 70%......... (T -0.154 seconds) ETA: Fri Mar 15 09:02:17 2024 2386s 80%......... (T -0.080 seconds) ETA: Fri Mar 15 09:02:17 2024 2386s 90%......... 2386s Hashing NZ_GG705064.fna backwards 2386s 0%......... (T -2.507 seconds) ETA: Fri Mar 15 09:02:19 2024 2386s 10%......... (T -1.265 seconds) ETA: Fri Mar 15 09:02:18 2024 2386s 20%......... (T -0.842 seconds) ETA: Fri Mar 15 09:02:18 2024 2386s 30%......... (T -0.666 seconds) ETA: Fri Mar 15 09:02:18 2024 2386s 40%......... (T -0.490 seconds) ETA: Fri Mar 15 09:02:18 2024 2386s 50%......... (T -0.385 seconds) ETA: Fri Mar 15 09:02:18 2024 2386s 60%......... (T -0.274 seconds) ETA: Fri Mar 15 09:02:18 2024 2386s 70%......... (T -0.180 seconds) ETA: Fri Mar 15 09:02:18 2024 2386s 80%......... (T -0.084 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 90%......... 2387s Hashing NZ_GG705064.gbk forwards 2387s 0%......... (T -0.391 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 10%......... (T -0.374 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 20%......... (T -0.361 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 30%......... (T -0.341 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 40%......... (T -0.264 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 50%......... (T -0.204 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 60%......... (T -0.148 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 70%......... (T -0.103 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 80%......... (T -0.052 seconds) ETA: Fri Mar 15 09:02:18 2024 2387s 90%......... 2387s Hashing NZ_GG705064.gbk backwards 2387s 0%......... (T -1.369 seconds) ETA: Fri Mar 15 09:02:20 2024 2387s 10%......... (T -1.318 seconds) ETA: Fri Mar 15 09:02:20 2024 2387s 20%......... (T -0.956 seconds) ETA: Fri Mar 15 09:02:19 2024 2387s 30%......... (T -0.671 seconds) ETA: Fri Mar 15 09:02:19 2024 2388s 40%......... (T -0.505 seconds) ETA: Fri Mar 15 09:02:19 2024 2388s 50%......... (T -0.369 seconds) ETA: Fri Mar 15 09:02:19 2024 2388s 60%......... (T -0.260 seconds) ETA: Fri Mar 15 09:02:19 2024 2388s 70%......... (T -0.161 seconds) ETA: Fri Mar 15 09:02:19 2024 2388s 80%......... (T -0.076 seconds) ETA: Fri Mar 15 09:02:19 2024 2388s 90%......... 2388s Initial hashing took: 2.939 seconds 2388s Extracting anchors from hash-space. 2389s (T -17.147 seconds) ETA: Fri Mar 15 09:02:37 2024 2391s 6%. (T -13.376 seconds) ETA: Fri Mar 15 09:02:35 2024 2393s 18%. (T -11.623 seconds) ETA: Fri Mar 15 09:02:36 2024 2395s 31%. (T -9.307 seconds) ETA: Fri Mar 15 09:02:35 2024 2397s 43%. (T -7.426 seconds) ETA: Fri Mar 15 09:02:36 2024 2399s 56%. (T -5.275 seconds) ETA: Fri Mar 15 09:02:35 2024 2402s 68%. (T -3.244 seconds) ETA: Fri Mar 15 09:02:36 2024 2404s 81%. (T -1.196 seconds) ETA: Fri Mar 15 09:02:36 2024 2406s 93%. 2406s Anchor extraction completed in: 17.757 seconds 2406s Total anchors: 0 2406s Anchor extraction + merge time: 17.757 seconds 2406s Total processing time: 25.918 seconds 2406s Writing anchors... 2406s Total seeds used in anchors: 16 2406s Hash performance: 2406s Keys used: 16 out of 16 possible (100.00%). 2406s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2406s Average pigeons per pigeon hole: 1 2410s Writing 16 repeats...Output writing finished in: 4.476 seconds 2411s Total time: 30.394 seconds 2411s Murasaki finished! 2411s PASSED MURASAKI 2411s 2411s Testing Genepare on NZ_GG705064.fna 2411s 1001 2411s PASSED GENEPARSE 2411s 2412s Testing mbfa on NZ_GG705064.fna 2412s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2413s PASSED mbfa 2413s 2413s Test Murasaki on NZ_GG705065.fna 2413s Verbosity level is: 0 2413s Writing to: output/test 2413s Pattern is: 101 2413s Max usable hash bits: 27 2413s Hit filter is: 0 2413s Hash table type is: EcoHash 2413s Hashing every: 1 base 2413s Histogram detail is: 0 2413s Hashing function is: 3 2413s Collision profiling is: disabled 2413s Repeats are: unmasked 2413s Mergefilter is at: 100 2413s Random seed: 1710493364 (automatic) 2413s Bitscore output: on 2413s Leave status records: no 2413s Join neighbors is: off 2413s Target memory is: 1.28 GB 2413s Retain members is: true 2413s Store repeatmap? yes 2413s Reverse complement data is generated on the fly 2413s Rifts allowed: 0 2413s Fuzzy Extension: yes 2413s Score by minimum pair: yes 2413s Gapped anchors: no 2413s Large sequence support is: enabled => seqpos is 8 bytes 2413s Murasaki version 1.68.6 (LARGESEQ) 2413s Loading NZ_GG705065.fna 2413s Read 123593bp (120.70 KBp) in 0.100 seconds (1.2 MBp/s) 2413s Done with forward strand (130343bp). Preparing reverse complement... 2413s <-> Reversing metdata. 2413s Done. 2413s Seq NZ_GG705065.fna loaded. 127.29 KB 2413s Loading NZ_GG705065.gbk 2413s Read 123593bp (120.70 KBp) in 0.117 seconds (1.0 MBp/s) 2413s Done with forward strand (130343bp). Preparing reverse complement... 2413s <-> Reversing metdata. 2413s Done. 2413s Seq NZ_GG705065.gbk loaded. 127.29 KB 2413s Sequence loading took: 0.228 seconds 2413s Forward frequencies: A:28.2694% C:23.0272% G:21.2504% T:27.453% 2413s Global base frequencies: A/T:55.7224% C/G:44.2776% 2413s Pat: 3 bases long with weight 2 2413s 1 101 2413s Computing hash parameters... 2413s Using 4 hashbits 2413s 0%......... (T -2.260 seconds) ETA: Fri Mar 15 09:02:46 2024 2413s 10%......... (T -1.993 seconds) ETA: Fri Mar 15 09:02:46 2024 2414s 20%......... (T -1.774 seconds) ETA: Fri Mar 15 09:02:46 2024 2414s 30%......... (T -1.494 seconds) ETA: Fri Mar 15 09:02:46 2024 2414s 40%......... (T -1.286 seconds) ETA: Fri Mar 15 09:02:46 2024 2414s 50%......... (T -1.015 seconds) ETA: Fri Mar 15 09:02:46 2024 2415s 60%......... (T -0.749 seconds) ETA: Fri Mar 15 09:02:46 2024 2415s 70%......... (T -0.494 seconds) ETA: Fri Mar 15 09:02:46 2024 2415s 80%......... (T -0.217 seconds) ETA: Fri Mar 15 09:02:46 2024 2415s 91%........ 2415s Acceptable hash function found after 1000 cycles. 2415s Best uses 2/2 bases and has 0 empties from 2 inputs. 2415s Score: 0.96875 (cf. worst: -4.51562) 2415s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2415s Total correlation penalty: 0 2415s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2415s 10 2415s == 2415s w[ 0]>>29: -.C 2415s w[ 0]>>30: A.- 2415s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 2415s Ecolist (optimistic): Expcted entries per list: 15 2415s Ecolist (optimistic): Minimum chunks per list: 3 2415s Would take minimum 256.000000 bytes to make perfect hash. 2415s Hashing 482.79 KB of sequence requires: 2415s ~ linear (in seq length) hashing cost of 1.18 MB 2415s ~ linear (in seq length) expected anchor cost of 11.93 MB 2415s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2415s Expected memory usage (without anchors): 1.18 MB 2415s Expected memory usage (with anchors): 13.11 MB 2415s Hash parameters computed in 2.461 seconds 2415s Creating storage structures: 16 entries in 256 bytes space. 2415s Storage structures created in: 0.015 seconds 2415s 2415s Hashing NZ_GG705065.fna forwards 2415s 0%......... (T -0.349 seconds) ETA: Fri Mar 15 09:02:47 2024 2415s 10%......... (T -0.246 seconds) ETA: Fri Mar 15 09:02:47 2024 2415s 20%......... (T -0.242 seconds) ETA: Fri Mar 15 09:02:47 2024 2415s 30%......... (T -0.227 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 40%......... (T -0.208 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 50%......... (T -0.157 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 60%......... (T -0.114 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 70%......... (T -0.076 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 80%......... (T -0.041 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 90%......... 2416s Hashing NZ_GG705065.fna backwards 2416s 0%......... (T -0.229 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 10%......... (T -0.308 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 20%......... (T -0.258 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 30%......... (T -0.212 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 40%......... (T -0.221 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 50%......... (T -0.179 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 60%......... (T -0.138 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 70%......... (T -0.096 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 80%......... (T -0.048 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 90%......... 2416s Hashing NZ_GG705065.gbk forwards 2416s 0%......... (T -0.281 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 10%......... (T -0.240 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 20%......... (T -0.223 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 30%......... (T -0.181 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 40%......... (T -0.156 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 50%......... (T -0.122 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 60%......... (T -0.094 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 70%......... (T -0.063 seconds) ETA: Fri Mar 15 09:02:47 2024 2416s 80%......... (T -0.032 seconds) ETA: Fri Mar 15 09:02:47 2024 2417s 90%......... 2417s Hashing NZ_GG705065.gbk backwards 2417s 0%......... (T -0.320 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 10%......... (T -0.271 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 20%......... (T -0.226 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 30%......... (T -0.205 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 40%......... (T -0.164 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 50%......... (T -0.130 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 60%......... (T -0.097 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 70%......... (T -0.065 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 80%......... (T -0.032 seconds) ETA: Fri Mar 15 09:02:48 2024 2417s 90%......... 2417s Initial hashing took: 1.527 seconds 2417s Extracting anchors from hash-space. 2417s (T -4.339 seconds) ETA: Fri Mar 15 09:02:52 2024 2418s 6%. (T -5.033 seconds) ETA: Fri Mar 15 09:02:54 2024 2419s 18%. (T -4.330 seconds) ETA: Fri Mar 15 09:02:54 2024 2420s 31%. (T -4.005 seconds) ETA: Fri Mar 15 09:02:55 2024 2421s 43%. (T -2.959 seconds) ETA: Fri Mar 15 09:02:55 2024 2422s 56%. (T -2.259 seconds) ETA: Fri Mar 15 09:02:55 2024 2423s 68%. (T -1.336 seconds) ETA: Fri Mar 15 09:02:55 2024 2423s 81%. (T -0.482 seconds) ETA: Fri Mar 15 09:02:55 2024 2423s 93%. 2423s Anchor extraction completed in: 6.643 seconds 2423s Total anchors: 0 2423s Anchor extraction + merge time: 6.643 seconds 2423s Total processing time: 10.879 seconds 2423s Writing anchors... 2423s Total seeds used in anchors: 16 2423s Hash performance: 2423s Keys used: 16 out of 16 possible (100.00%). 2424s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2424s Average pigeons per pigeon hole: 1 2425s Writing 16 repeats...Output writing finished in: 1.919 seconds 2425s Total time: 12.798 seconds 2425s Murasaki finished! 2425s PASSED MURASAKI 2426s 2426s Testing Genepare on NZ_GG705065.fna 2426s 1001 2426s PASSED GENEPARSE 2426s 2426s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2426s Testing mbfa on NZ_GG705065.fna 2427s PASSED mbfa 2427s 2427s Test Murasaki on NZ_GG705066.fna 2427s Verbosity level is: 0 2427s Writing to: output/test 2427s Pattern is: 101 2427s Max usable hash bits: 27 2427s Hit filter is: 0 2427s Hash table type is: EcoHash 2427s Hashing every: 1 base 2427s Histogram detail is: 0 2427s Hashing function is: 3 2427s Collision profiling is: disabled 2427s Repeats are: unmasked 2427s Mergefilter is at: 100 2427s Random seed: 1710493378 (automatic) 2427s Bitscore output: on 2427s Leave status records: no 2427s Join neighbors is: off 2427s Target memory is: 1.28 GB 2427s Retain members is: true 2427s Store repeatmap? yes 2427s Reverse complement data is generated on the fly 2427s Rifts allowed: 0 2427s Fuzzy Extension: yes 2427s Score by minimum pair: yes 2427s Gapped anchors: no 2427s Large sequence support is: enabled => seqpos is 8 bytes 2427s Murasaki version 1.68.6 (LARGESEQ) 2427s Loading NZ_GG705066.fna 2427s Read 102039bp (99.65 KBp) in 0.123 seconds (810.3 KBp/s) 2427s Done with forward strand (106208bp). Preparing reverse complement... 2427s <-> Reversing metdata. 2427s Done. 2427s Seq NZ_GG705066.fna loaded. 103.72 KB 2427s Loading NZ_GG705066.gbk 2427s Read 102039bp (99.65 KBp) in 0.138 seconds (724.2 KBp/s) 2427s Done with forward strand (106208bp). Preparing reverse complement... 2427s <-> Reversing metdata. 2427s Done. 2427s Seq NZ_GG705066.gbk loaded. 103.72 KB 2427s Sequence loading took: 0.274 seconds 2427s Forward frequencies: A:29.277% C:20.206% G:22.6257% T:27.8913% 2427s Global base frequencies: A/T:57.1683% C/G:42.8317% 2427s Pat: 3 bases long with weight 2 2427s 1 101 2427s Computing hash parameters... 2427s Using 4 hashbits 2427s 0%......... (T -1.990 seconds) ETA: Fri Mar 15 09:03:00 2024 2427s 10%......... (T -1.779 seconds) ETA: Fri Mar 15 09:03:00 2024 2428s 20%......... (T -1.598 seconds) ETA: Fri Mar 15 09:03:00 2024 2428s 30%......... (T -1.417 seconds) ETA: Fri Mar 15 09:03:00 2024 2428s 40%......... (T -1.253 seconds) ETA: Fri Mar 15 09:03:00 2024 2429s 50%......... (T -1.052 seconds) ETA: Fri Mar 15 09:03:01 2024 2429s 60%......... (T -0.933 seconds) ETA: Fri Mar 15 09:03:01 2024 2430s 70%......... (T -0.626 seconds) ETA: Fri Mar 15 09:03:01 2024 2430s 80%......... (T -0.286 seconds) ETA: Fri Mar 15 09:03:01 2024 2430s 91%........ 2430s Acceptable hash function found after 1000 cycles. 2430s Best uses 2/2 bases and has 0 empties from 2 inputs. 2430s Score: 0.96875 (cf. worst: -4.51562) 2430s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2430s Total correlation penalty: 0 2430s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2430s 10 2430s == 2430s w[ 0]>>29: -.C 2430s w[ 0]>>30: A.- 2430s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 2430s Ecolist (optimistic): Expcted entries per list: 15 2430s Ecolist (optimistic): Minimum chunks per list: 3 2430s Would take minimum 256.000000 bytes to make perfect hash. 2430s Hashing 398.59 KB of sequence requires: 2430s ~ linear (in seq length) hashing cost of 996.46 KB 2430s ~ linear (in seq length) expected anchor cost of 9.72 MB 2430s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2430s Expected memory usage (without anchors): 996.71 KB 2430s Expected memory usage (with anchors): 10.70 MB 2430s Hash parameters computed in 3.357 seconds 2430s Creating storage structures: 16 entries in 256 bytes space. 2430s Storage structures created in: 0.009 seconds 2430s 2430s Hashing NZ_GG705066.fna forwards 2430s 0%......... (T -0.954 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 10%......... (T -0.614 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 20%......... (T -0.470 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 30%......... (T -0.497 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 40%......... (T -0.371 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 50%......... (T -0.289 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 60%......... (T -0.213 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 70%......... (T -0.133 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 80%......... (T -0.062 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 90%......... 2431s Hashing NZ_GG705066.fna backwards 2431s 0%......... (T -0.243 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 10%......... (T -0.222 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 20%......... (T -0.220 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 30%......... (T -0.187 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 40%......... (T -0.163 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 50%......... (T -0.147 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 60%......... (T -0.106 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 70%......... (T -0.069 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 80%......... (T -0.033 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 90%......... 2431s Hashing NZ_GG705066.gbk forwards 2431s 0%......... (T -0.217 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 10%......... (T -0.181 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 20%......... (T -0.168 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 30%......... (T -0.149 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 40%......... (T -0.124 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 50%......... (T -0.096 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 60%......... (T -0.073 seconds) ETA: Fri Mar 15 09:03:02 2024 2431s 70%......... (T -0.049 seconds) ETA: Fri Mar 15 09:03:02 2024 2432s 80%......... (T -0.025 seconds) ETA: Fri Mar 15 09:03:02 2024 2432s 90%......... 2432s Hashing NZ_GG705066.gbk backwards 2432s 0%......... (T -0.300 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 10%......... (T -0.278 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 20%......... (T -0.224 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 30%......... (T -0.186 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 40%......... (T -0.156 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 50%......... (T -0.133 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 60%......... (T -0.108 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 70%......... (T -0.071 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 80%......... (T -0.036 seconds) ETA: Fri Mar 15 09:03:03 2024 2432s 90%......... 2432s Initial hashing took: 1.605 seconds 2432s Extracting anchors from hash-space. 2433s (T -12.146 seconds) ETA: Fri Mar 15 09:03:16 2024 2433s 6%. (T -6.278 seconds) ETA: Fri Mar 15 09:03:11 2024 2434s 18%. (T -4.373 seconds) ETA: Fri Mar 15 09:03:09 2024 2435s 31%. (T -3.389 seconds) ETA: Fri Mar 15 09:03:09 2024 2435s 43%. (T -2.548 seconds) ETA: Fri Mar 15 09:03:09 2024 2436s 56%. (T -1.865 seconds) ETA: Fri Mar 15 09:03:09 2024 2437s 68%. (T -1.212 seconds) ETA: Fri Mar 15 09:03:09 2024 2438s 81%. (T -0.439 seconds) ETA: Fri Mar 15 09:03:09 2024 2438s 93%. 2438s Anchor extraction completed in: 6.185 seconds 2438s Total anchors: 0 2438s Anchor extraction + merge time: 6.188 seconds 2438s Total processing time: 11.442 seconds 2438s Writing anchors... 2438s Total seeds used in anchors: 16 2438s Hash performance: 2438s Keys used: 16 out of 16 possible (100.00%). 2438s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2438s Average pigeons per pigeon hole: 1 2440s Writing 16 repeats...Output writing finished in: 2.129 seconds 2440s Total time: 13.571 seconds 2440s Murasaki finished! 2440s PASSED MURASAKI 2440s 2440s Testing Genepare on NZ_GG705066.fna 2440s 1001 2440s PASSED GENEPARSE 2440s 2441s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2441s Testing mbfa on NZ_GG705066.fna 2442s PASSED mbfa 2442s 2442s Test Murasaki on NZ_GG705067.fna 2442s Verbosity level is: 0 2442s Writing to: output/test 2442s Pattern is: 101 2442s Max usable hash bits: 27 2442s Hit filter is: 0 2442s Hash table type is: EcoHash 2442s Hashing every: 1 base 2442s Histogram detail is: 0 2442s Hashing function is: 3 2442s Collision profiling is: disabled 2442s Repeats are: unmasked 2442s Mergefilter is at: 100 2442s Random seed: 1710493393 (automatic) 2442s Bitscore output: on 2442s Leave status records: no 2442s Join neighbors is: off 2442s Target memory is: 1.28 GB 2442s Retain members is: true 2442s Store repeatmap? yes 2442s Reverse complement data is generated on the fly 2442s Rifts allowed: 0 2442s Fuzzy Extension: yes 2442s Score by minimum pair: yes 2442s Gapped anchors: no 2442s Large sequence support is: enabled => seqpos is 8 bytes 2442s Murasaki version 1.68.6 (LARGESEQ) 2442s Loading NZ_GG705067.fna 2442s Read 92138bp (89.98 KBp) in 0.140 seconds (644.2 KBp/s) 2442s Done with forward strand (99840bp). Preparing reverse complement... 2442s <-> Reversing metdata. 2442s Done. 2442s Seq NZ_GG705067.fna loaded. 97.50 KB 2442s Loading NZ_GG705067.gbk 2442s Read 92138bp (89.98 KBp) in 0.087 seconds (1.0 MBp/s) 2442s Done with forward strand (99840bp). Preparing reverse complement... 2442s <-> Reversing metdata. 2442s Done. 2442s Seq NZ_GG705067.gbk loaded. 97.50 KB 2442s Sequence loading took: 0.234 seconds 2442s Forward frequencies: A:28.7753% C:20.1448% G:22.0311% T:29.0488% 2442s Global base frequencies: A/T:57.8241% C/G:42.1759% 2442s Pat: 3 bases long with weight 2 2442s 1 101 2442s Computing hash parameters... 2442s Using 4 hashbits 2442s 0%......... (T -4.771 seconds) ETA: Fri Mar 15 09:03:18 2024 2443s 10%......... (T -3.825 seconds) ETA: Fri Mar 15 09:03:18 2024 2443s 20%......... (T -2.731 seconds) ETA: Fri Mar 15 09:03:17 2024 2443s 30%......... (T -2.406 seconds) ETA: Fri Mar 15 09:03:17 2024 2444s 40%......... (T -2.080 seconds) ETA: Fri Mar 15 09:03:17 2024 2444s 50%......... (T -1.664 seconds) ETA: Fri Mar 15 09:03:17 2024 2445s 60%......... (T -1.300 seconds) ETA: Fri Mar 15 09:03:17 2024 2446s 70%......... (T -0.933 seconds) ETA: Fri Mar 15 09:03:17 2024 2446s 80%......... (T -0.437 seconds) ETA: Fri Mar 15 09:03:18 2024 2447s 91%........ 2447s Acceptable hash function found after 1000 cycles. 2447s Best uses 2/2 bases and has 0 empties from 2 inputs. 2447s Score: 0.96875 (cf. worst: -4.51562) 2447s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2447s Total correlation penalty: 0 2447s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2447s 10 2447s == 2447s w[ 0]>>29: -.C 2447s w[ 0]>>30: A.- 2447s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 2447s Ecolist (optimistic): Expcted entries per list: 15 2447s Ecolist (optimistic): Minimum chunks per list: 3 2447s Would take minimum 256.000000 bytes to make perfect hash. 2447s Hashing 359.91 KB of sequence requires: 2447s ~ linear (in seq length) hashing cost of 899.79 KB 2447s ~ linear (in seq length) expected anchor cost of 9.14 MB 2447s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2447s Expected memory usage (without anchors): 900.04 KB 2447s Expected memory usage (with anchors): 10.02 MB 2447s Hash parameters computed in 5.314 seconds 2447s Creating storage structures: 16 entries in 256 bytes space. 2447s Storage structures created in: 0.016 seconds 2447s 2447s Hashing NZ_GG705067.fna forwards 2447s 0%......... (T -0.688 seconds) ETA: Fri Mar 15 09:03:19 2024 2447s 10%......... (T -0.468 seconds) ETA: Fri Mar 15 09:03:19 2024 2447s 20%......... (T -0.327 seconds) ETA: Fri Mar 15 09:03:19 2024 2447s 30%......... (T -0.275 seconds) ETA: Fri Mar 15 09:03:19 2024 2447s 40%......... (T -0.272 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 50%......... (T -0.213 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 60%......... (T -0.159 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 70%......... (T -0.112 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 80%......... (T -0.052 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 90%......... 2448s Hashing NZ_GG705067.fna backwards 2448s 0%......... (T -0.960 seconds) ETA: Fri Mar 15 09:03:20 2024 2448s 10%......... (T -0.490 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 20%......... (T -0.394 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 30%......... (T -0.348 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 40%......... (T -0.244 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 50%......... (T -0.178 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 60%......... (T -0.128 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 70%......... (T -0.098 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 80%......... (T -0.047 seconds) ETA: Fri Mar 15 09:03:19 2024 2448s 90%......... 2448s Hashing NZ_GG705067.gbk forwards 2448s 0%......... (T -0.590 seconds) ETA: Fri Mar 15 09:03:20 2024 2448s 10%......... (T -0.386 seconds) ETA: Fri Mar 15 09:03:20 2024 2448s 20%......... (T -0.546 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 30%......... (T -0.416 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 40%......... (T -0.315 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 50%......... (T -0.232 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 60%......... (T -0.161 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 70%......... (T -0.104 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 80%......... (T -0.060 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 90%......... 2449s Hashing NZ_GG705067.gbk backwards 2449s 0%......... (T -0.506 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 10%......... (T -0.536 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 20%......... (T -0.380 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 30%......... (T -0.299 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 40%......... (T -0.288 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 50%......... (T -0.263 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 60%......... (T -0.192 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 70%......... (T -0.120 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 80%......... (T -0.057 seconds) ETA: Fri Mar 15 09:03:20 2024 2449s 90%......... 2449s Initial hashing took: 2.124 seconds 2449s Extracting anchors from hash-space. 2450s (T -3.962 seconds) ETA: Fri Mar 15 09:03:25 2024 2451s 6%. (T -6.896 seconds) ETA: Fri Mar 15 09:03:29 2024 2451s 18%. (T -4.495 seconds) ETA: Fri Mar 15 09:03:27 2024 2452s 31%. (T -3.882 seconds) ETA: Fri Mar 15 09:03:27 2024 2453s 43%. (T -2.824 seconds) ETA: Fri Mar 15 09:03:27 2024 2454s 56%. (T -2.238 seconds) ETA: Fri Mar 15 09:03:27 2024 2455s 68%. (T -1.372 seconds) ETA: Fri Mar 15 09:03:28 2024 2456s 81%. (T -0.499 seconds) ETA: Fri Mar 15 09:03:27 2024 2456s 93%. 2456s Anchor extraction completed in: 6.996 seconds 2456s Total anchors: 0 2456s Anchor extraction + merge time: 6.997 seconds 2456s Total processing time: 14.743 seconds 2456s Writing anchors... 2456s Total seeds used in anchors: 16 2456s Hash performance: 2456s Keys used: 16 out of 16 possible (100.00%). 2456s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2456s Average pigeons per pigeon hole: 1 2458s Writing 16 repeats...Output writing finished in: 1.521 seconds 2458s Total time: 16.265 seconds 2458s Murasaki finished! 2458s PASSED MURASAKI 2458s 2458s Testing Genepare on NZ_GG705067.fna 2458s 1001 2458s PASSED GENEPARSE 2458s 2460s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2460s Testing mbfa on NZ_GG705067.fna 2460s PASSED mbfa 2460s 2460s Test Murasaki on NZ_GG705068.fna 2460s Verbosity level is: 0 2460s Writing to: output/test 2460s Pattern is: 101 2460s Max usable hash bits: 27 2460s Hit filter is: 0 2460s Hash table type is: EcoHash 2460s Hashing every: 1 base 2460s Histogram detail is: 0 2460s Hashing function is: 3 2460s Collision profiling is: disabled 2460s Repeats are: unmasked 2460s Mergefilter is at: 100 2460s Random seed: 1710493411 (automatic) 2460s Bitscore output: on 2460s Leave status records: no 2460s Join neighbors is: off 2460s Target memory is: 1.28 GB 2460s Retain members is: true 2460s Store repeatmap? yes 2460s Reverse complement data is generated on the fly 2460s Rifts allowed: 0 2460s Fuzzy Extension: yes 2460s Score by minimum pair: yes 2460s Gapped anchors: no 2460s Large sequence support is: enabled => seqpos is 8 bytes 2460s Murasaki version 1.68.6 (LARGESEQ) 2460s Loading NZ_GG705068.fna 2460s Read 74802bp (73.05 KBp) in 0.215 seconds (339.7 KBp/s) 2460s Done with forward strand (85653bp). Preparing reverse complement... 2460s <-> Reversing metdata. 2460s Done. 2460s Seq NZ_GG705068.fna loaded. 83.65 KB 2460s Loading NZ_GG705068.gbk 2461s Read 74802bp (73.05 KBp) in 0.142 seconds (516.2 KBp/s) 2461s Done with forward strand (85653bp). Preparing reverse complement... 2461s <-> Reversing metdata. 2461s Done. 2461s Seq NZ_GG705068.gbk loaded. 83.65 KB 2461s Sequence loading took: 0.387 seconds 2461s Forward frequencies: A:30.0326% C:20.0289% G:19.2147% T:30.7238% 2461s Global base frequencies: A/T:60.7564% C/G:39.2436% 2461s Pat: 3 bases long with weight 2 2461s 1 101 2461s Computing hash parameters... 2461s Using 4 hashbits 2461s 0%......... (T -4.680 seconds) ETA: Fri Mar 15 09:03:37 2024 2462s 10%......... (T -3.862 seconds) ETA: Fri Mar 15 09:03:36 2024 2462s 20%......... (T -3.238 seconds) ETA: Fri Mar 15 09:03:36 2024 2462s 30%......... (T -2.676 seconds) ETA: Fri Mar 15 09:03:36 2024 2463s 40%......... (T -2.809 seconds) ETA: Fri Mar 15 09:03:37 2024 2464s 50%......... (T -2.322 seconds) ETA: Fri Mar 15 09:03:37 2024 2465s 60%......... (T -1.708 seconds) ETA: Fri Mar 15 09:03:37 2024 2465s 70%......... (T -1.115 seconds) ETA: Fri Mar 15 09:03:37 2024 2465s 80%......... (T -0.473 seconds) ETA: Fri Mar 15 09:03:37 2024 2466s 91%........ 2466s Acceptable hash function found after 1000 cycles. 2466s Best uses 2/2 bases and has 0 empties from 2 inputs. 2466s Score: 0.96875 (cf. worst: -4.51562) 2466s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2466s Total correlation penalty: 0 2466s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2466s 10 2466s == 2466s w[ 0]>>29: -.C 2466s w[ 0]>>30: A.- 2466s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 2466s Ecolist (optimistic): Expcted entries per list: 15 2466s Ecolist (optimistic): Minimum chunks per list: 3 2466s Would take minimum 256.000000 bytes to make perfect hash. 2466s Hashing 292.20 KB of sequence requires: 2466s ~ linear (in seq length) hashing cost of 730.49 KB 2466s ~ linear (in seq length) expected anchor cost of 7.84 MB 2466s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2466s Expected memory usage (without anchors): 730.74 KB 2466s Expected memory usage (with anchors): 8.56 MB 2466s Hash parameters computed in 5.433 seconds 2466s Creating storage structures: 16 entries in 256 bytes space. 2466s Storage structures created in: 0.051 seconds 2466s 2466s Hashing NZ_GG705068.fna forwards 2466s 0%......... (T -1.615 seconds) ETA: Fri Mar 15 09:03:39 2024 2466s 10%......... (T -1.038 seconds) ETA: Fri Mar 15 09:03:38 2024 2466s 20%......... (T -0.756 seconds) ETA: Fri Mar 15 09:03:38 2024 2466s 30%......... (T -0.627 seconds) ETA: Fri Mar 15 09:03:38 2024 2467s 40%......... (T -0.555 seconds) ETA: Fri Mar 15 09:03:38 2024 2467s 50%......... (T -0.430 seconds) ETA: Fri Mar 15 09:03:38 2024 2467s 60%......... (T -0.325 seconds) ETA: Fri Mar 15 09:03:38 2024 2467s 70%......... (T -0.206 seconds) ETA: Fri Mar 15 09:03:38 2024 2467s 80%......... (T -0.097 seconds) ETA: Fri Mar 15 09:03:38 2024 2467s 90%......... 2467s Hashing NZ_GG705068.fna backwards 2467s 0%......... (T -0.504 seconds) ETA: Fri Mar 15 09:03:39 2024 2467s 10%......... (T -0.562 seconds) ETA: Fri Mar 15 09:03:39 2024 2467s 20%......... (T -0.578 seconds) ETA: Fri Mar 15 09:03:39 2024 2468s 30%......... (T -0.447 seconds) ETA: Fri Mar 15 09:03:39 2024 2468s 40%......... (T -0.352 seconds) ETA: Fri Mar 15 09:03:39 2024 2468s 50%......... (T -0.275 seconds) ETA: Fri Mar 15 09:03:39 2024 2468s 60%......... (T -0.206 seconds) ETA: Fri Mar 15 09:03:39 2024 2468s 70%......... (T -0.149 seconds) ETA: Fri Mar 15 09:03:39 2024 2468s 80%......... (T -0.077 seconds) ETA: Fri Mar 15 09:03:39 2024 2468s 90%......... 2468s Hashing NZ_GG705068.gbk forwards 2468s 0%......... (T -0.949 seconds) ETA: Fri Mar 15 09:03:40 2024 2468s 10%......... (T -0.700 seconds) ETA: Fri Mar 15 09:03:40 2024 2468s 20%......... (T -0.666 seconds) ETA: Fri Mar 15 09:03:40 2024 2468s 30%......... (T -0.570 seconds) ETA: Fri Mar 15 09:03:40 2024 2468s 40%......... (T -0.476 seconds) ETA: Fri Mar 15 09:03:40 2024 2469s 50%......... (T -0.378 seconds) ETA: Fri Mar 15 09:03:40 2024 2469s 60%......... (T -0.253 seconds) ETA: Fri Mar 15 09:03:40 2024 2469s 70%......... (T -0.177 seconds) ETA: Fri Mar 15 09:03:40 2024 2469s 80%......... (T -0.085 seconds) ETA: Fri Mar 15 09:03:40 2024 2469s 90%......... 2469s Hashing NZ_GG705068.gbk backwards 2469s 0%......... (T -0.725 seconds) ETA: Fri Mar 15 09:03:41 2024 2469s 10%......... (T -0.647 seconds) ETA: Fri Mar 15 09:03:41 2024 2469s 20%......... (T -0.577 seconds) ETA: Fri Mar 15 09:03:41 2024 2469s 30%......... (T -0.512 seconds) ETA: Fri Mar 15 09:03:41 2024 2469s 40%......... (T -0.405 seconds) ETA: Fri Mar 15 09:03:41 2024 2469s 50%......... (T -0.342 seconds) ETA: Fri Mar 15 09:03:41 2024 2470s 60%......... (T -0.262 seconds) ETA: Fri Mar 15 09:03:41 2024 2470s 70%......... (T -0.168 seconds) ETA: Fri Mar 15 09:03:41 2024 2470s 80%......... (T -0.078 seconds) ETA: Fri Mar 15 09:03:41 2024 2470s 90%......... 2470s Initial hashing took: 3.600 seconds 2470s Extracting anchors from hash-space. 2470s (T -10.565 seconds) ETA: Fri Mar 15 09:03:52 2024 2471s 6%. (T -6.161 seconds) ETA: Fri Mar 15 09:03:48 2024 2472s 18%. (T -6.262 seconds) ETA: Fri Mar 15 09:03:50 2024 2473s 31%. (T -4.834 seconds) ETA: Fri Mar 15 09:03:49 2024 2475s 43%. (T -4.075 seconds) ETA: Fri Mar 15 09:03:50 2024 2476s 56%. (T -2.825 seconds) ETA: Fri Mar 15 09:03:49 2024 2476s 68%. (T -1.572 seconds) ETA: Fri Mar 15 09:03:49 2024 2477s 81%. (T -0.536 seconds) ETA: Fri Mar 15 09:03:48 2024 2477s 93%. 2477s Anchor extraction completed in: 7.339 seconds 2477s Total anchors: 0 2477s Anchor extraction + merge time: 7.339 seconds 2477s Total processing time: 16.825 seconds 2477s Writing anchors... 2477s Total seeds used in anchors: 16 2477s Hash performance: 2477s Keys used: 16 out of 16 possible (100.00%). 2477s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2477s Average pigeons per pigeon hole: 1 2479s Writing 16 repeats...Output writing finished in: 1.560 seconds 2479s Total time: 18.385 seconds 2479s Murasaki finished! 2479s PASSED MURASAKI 2479s 2479s Testing Genepare on NZ_GG705068.fna 2479s 1001 2479s PASSED GENEPARSE 2479s 2480s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2480s Testing mbfa on NZ_GG705068.fna 2480s PASSED mbfa 2480s 2480s Test Murasaki on NZ_GG705069.fna 2480s Verbosity level is: 0 2480s Writing to: output/test 2480s Pattern is: 101 2480s Max usable hash bits: 27 2480s Hit filter is: 0 2480s Hash table type is: EcoHash 2480s Hashing every: 1 base 2480s Histogram detail is: 0 2480s Hashing function is: 3 2480s Collision profiling is: disabled 2480s Repeats are: unmasked 2480s Mergefilter is at: 100 2480s Random seed: 1710493431 (automatic) 2480s Bitscore output: on 2480s Leave status records: no 2480s Join neighbors is: off 2480s Target memory is: 1.28 GB 2480s Retain members is: true 2480s Store repeatmap? yes 2480s Reverse complement data is generated on the fly 2480s Rifts allowed: 0 2480s Fuzzy Extension: yes 2480s Score by minimum pair: yes 2480s Gapped anchors: no 2480s Large sequence support is: enabled => seqpos is 8 bytes 2480s Murasaki version 1.68.6 (LARGESEQ) 2480s Loading NZ_GG705069.fna 2480s Read 49931bp (48.76 KBp) in 0.053 seconds (923.3 KBp/s) 2480s Done with forward strand (54571bp). Preparing reverse complement... 2480s <-> Reversing metdata. 2480s Done. 2480s Seq NZ_GG705069.fna loaded. 53.29 KB 2480s Loading NZ_GG705069.gbk 2480s Read 49931bp (48.76 KBp) in 0.053 seconds (928.7 KBp/s) 2480s Done with forward strand (54571bp). Preparing reverse complement... 2480s <-> Reversing metdata. 2480s Done. 2480s Seq NZ_GG705069.gbk loaded. 53.29 KB 2480s Sequence loading took: 0.123 seconds 2480s Forward frequencies: A:27.7563% C:21.4616% G:21.8221% T:28.96% 2480s Global base frequencies: A/T:56.7163% C/G:43.2837% 2480s Pat: 3 bases long with weight 2 2480s 1 101 2480s Computing hash parameters... 2480s Using 4 hashbits 2481s 0%......... (T -3.619 seconds) ETA: Fri Mar 15 09:03:55 2024 2481s 10%......... (T -2.760 seconds) ETA: Fri Mar 15 09:03:55 2024 2482s 20%......... (T -2.560 seconds) ETA: Fri Mar 15 09:03:55 2024 2482s 30%......... (T -2.080 seconds) ETA: Fri Mar 15 09:03:55 2024 2482s 40%......... (T -1.722 seconds) ETA: Fri Mar 15 09:03:55 2024 2483s 50%......... (T -1.471 seconds) ETA: Fri Mar 15 09:03:55 2024 2483s 60%......... (T -1.094 seconds) ETA: Fri Mar 15 09:03:55 2024 2484s 70%......... (T -0.797 seconds) ETA: Fri Mar 15 09:03:55 2024 2484s 80%......... (T -0.400 seconds) ETA: Fri Mar 15 09:03:56 2024 2485s 91%........ 2485s Acceptable hash function found after 1000 cycles. 2485s Best uses 2/2 bases and has 0 empties from 2 inputs. 2485s Score: 0.96875 (cf. worst: -4.51562) 2485s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2485s Total correlation penalty: 0 2485s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2485s 10 2485s == 2485s w[ 0]>>29: -.C 2485s w[ 0]>>30: A.- 2485s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 2485s Ecolist (optimistic): Expcted entries per list: 14 2485s Ecolist (optimistic): Minimum chunks per list: 3 2485s Would take minimum 256.000000 bytes to make perfect hash. 2485s Hashing 195.04 KB of sequence requires: 2485s ~ linear (in seq length) hashing cost of 463.22 KB 2485s ~ linear (in seq length) expected anchor cost of 5.00 MB 2485s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2485s Expected memory usage (without anchors): 463.47 KB 2485s Expected memory usage (with anchors): 5.45 MB 2485s Hash parameters computed in 4.567 seconds 2485s Creating storage structures: 16 entries in 256 bytes space. 2485s Storage structures created in: 0.008 seconds 2485s 2485s Hashing NZ_GG705069.fna forwards 2485s 0%......... (T -0.905 seconds) ETA: Fri Mar 15 09:03:57 2024 2485s 10%......... (T -0.689 seconds) ETA: Fri Mar 15 09:03:57 2024 2485s 20%......... (T -0.455 seconds) ETA: Fri Mar 15 09:03:57 2024 2485s 30%......... (T -0.309 seconds) ETA: Fri Mar 15 09:03:56 2024 2485s 40%......... (T -0.274 seconds) ETA: Fri Mar 15 09:03:57 2024 2485s 50%......... (T -0.188 seconds) ETA: Fri Mar 15 09:03:56 2024 2485s 60%......... (T -0.123 seconds) ETA: Fri Mar 15 09:03:56 2024 2485s 70%......... (T -0.077 seconds) ETA: Fri Mar 15 09:03:56 2024 2485s 80%......... (T -0.037 seconds) ETA: Fri Mar 15 09:03:56 2024 2485s 90%......... 2485s Hashing NZ_GG705069.fna backwards 2485s 0%......... (T -0.255 seconds) ETA: Fri Mar 15 09:03:57 2024 2485s 10%......... (T -0.236 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 20%......... (T -0.184 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 30%......... (T -0.144 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 40%......... (T -0.140 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 50%......... (T -0.097 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 60%......... (T -0.066 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 70%......... (T -0.044 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 80%......... (T -0.022 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 90%......... 2486s Hashing NZ_GG705069.gbk forwards 2486s 0%......... (T -0.640 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 10%......... (T -0.718 seconds) ETA: Fri Mar 15 09:03:58 2024 2486s 20%......... (T -0.474 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 30%......... (T -0.326 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 40%......... (T -0.232 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 50%......... (T -0.174 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 60%......... (T -0.139 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 70%......... (T -0.085 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 80%......... (T -0.047 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 90%......... 2486s Hashing NZ_GG705069.gbk backwards 2486s 0%......... (T -0.175 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 10%......... (T -0.163 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 20%......... (T -0.227 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 30%......... (T -0.175 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 40%......... (T -0.133 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 50%......... (T -0.100 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 60%......... (T -0.073 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 70%......... (T -0.048 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 80%......... (T -0.023 seconds) ETA: Fri Mar 15 09:03:57 2024 2486s 90%......... 2486s Initial hashing took: 1.421 seconds 2486s Extracting anchors from hash-space. 2487s (T -5.428 seconds) ETA: Fri Mar 15 09:04:03 2024 2488s 6%. (T -7.231 seconds) ETA: Fri Mar 15 09:04:06 2024 2489s 18%. (T -6.397 seconds) ETA: Fri Mar 15 09:04:07 2024 2491s 31%. (T -5.582 seconds) ETA: Fri Mar 15 09:04:07 2024 2492s 43%. (T -4.291 seconds) ETA: Fri Mar 15 09:04:07 2024 2493s 56%. (T -2.937 seconds) ETA: Fri Mar 15 09:04:07 2024 2494s 68%. (T -1.736 seconds) ETA: Fri Mar 15 09:04:07 2024 2495s 81%. (T -0.633 seconds) ETA: Fri Mar 15 09:04:06 2024 2495s 93%. 2495s Anchor extraction completed in: 8.869 seconds 2495s Total anchors: 0 2495s Anchor extraction + merge time: 8.873 seconds 2495s Total processing time: 15.001 seconds 2495s Writing anchors... 2495s Total seeds used in anchors: 16 2495s Hash performance: 2495s Keys used: 16 out of 16 possible (100.00%). 2495s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2495s Average pigeons per pigeon hole: 1 2497s Writing 16 repeats...Output writing finished in: 1.472 seconds 2497s Total time: 16.473 seconds 2497s Murasaki finished! 2497s PASSED MURASAKI 2497s 2497s Testing Genepare on NZ_GG705069.fna 2497s 1001 2497s PASSED GENEPARSE 2497s 2499s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2499s Testing mbfa on NZ_GG705069.fna 2499s PASSED mbfa 2499s 2499s Test Murasaki on NZ_GG705070.fna 2500s Verbosity level is: 0 2500s Writing to: output/test 2500s Pattern is: 101 2500s Max usable hash bits: 27 2500s Hit filter is: 0 2500s Hash table type is: EcoHash 2500s Hashing every: 1 base 2500s Histogram detail is: 0 2500s Hashing function is: 3 2500s Collision profiling is: disabled 2500s Repeats are: unmasked 2500s Mergefilter is at: 100 2500s Random seed: 1710493450 (automatic) 2500s Bitscore output: on 2500s Leave status records: no 2500s Join neighbors is: off 2500s Target memory is: 1.28 GB 2500s Retain members is: true 2500s Store repeatmap? yes 2500s Reverse complement data is generated on the fly 2500s Rifts allowed: 0 2500s Fuzzy Extension: yes 2500s Score by minimum pair: yes 2500s Gapped anchors: no 2500s Large sequence support is: enabled => seqpos is 8 bytes 2500s Murasaki version 1.68.6 (LARGESEQ) 2500s Loading NZ_GG705070.fna 2500s Read 51237bp (50.04 KBp) in 0.047 seconds (1.0 MBp/s) 2500s Done with forward strand (53557bp). Preparing reverse complement... 2500s <-> Reversing metdata. 2500s Done. 2500s Seq NZ_GG705070.fna loaded. 52.30 KB 2500s Loading NZ_GG705070.gbk 2500s Read 51237bp (50.04 KBp) in 0.052 seconds (965.4 KBp/s) 2500s Done with forward strand (53557bp). Preparing reverse complement... 2500s <-> Reversing metdata. 2500s Done. 2500s Seq NZ_GG705070.gbk loaded. 52.30 KB 2500s Sequence loading took: 0.109 seconds 2500s Forward frequencies: A:30.0915% C:19.7416% G:21.1527% T:29.0142% 2500s Global base frequencies: A/T:59.1057% C/G:40.8943% 2500s Pat: 3 bases long with weight 2 2500s 1 101 2500s Computing hash parameters... 2500s Using 4 hashbits 2500s 0%......... (T -5.755 seconds) ETA: Fri Mar 15 09:04:17 2024 2501s 10%......... (T -4.542 seconds) ETA: Fri Mar 15 09:04:16 2024 2501s 20%......... (T -3.477 seconds) ETA: Fri Mar 15 09:04:16 2024 2502s 30%......... (T -3.234 seconds) ETA: Fri Mar 15 09:04:16 2024 2502s 40%......... (T -2.832 seconds) ETA: Fri Mar 15 09:04:16 2024 2503s 50%......... (T -2.323 seconds) ETA: Fri Mar 15 09:04:16 2024 2504s 60%......... (T -1.724 seconds) ETA: Fri Mar 15 09:04:16 2024 2504s 70%......... (T -1.156 seconds) ETA: Fri Mar 15 09:04:16 2024 2505s 80%......... (T -0.492 seconds) ETA: Fri Mar 15 09:04:16 2024 2505s 91%........ 2505s Acceptable hash function found after 1000 cycles. 2505s Best uses 2/2 bases and has 0 empties from 2 inputs. 2505s Score: 0.96875 (cf. worst: -4.51562) 2505s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2505s Total correlation penalty: 0 2505s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2505s 10 2505s == 2505s w[ 0]>>29: -.C 2505s w[ 0]>>30: A.- 2505s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 2505s Ecolist (optimistic): Expcted entries per list: 14 2505s Ecolist (optimistic): Minimum chunks per list: 3 2505s Would take minimum 256.000000 bytes to make perfect hash. 2505s Hashing 200.14 KB of sequence requires: 2505s ~ linear (in seq length) hashing cost of 475.33 KB 2505s ~ linear (in seq length) expected anchor cost of 4.90 MB 2505s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2505s Expected memory usage (without anchors): 475.58 KB 2505s Expected memory usage (with anchors): 5.37 MB 2505s Hash parameters computed in 5.709 seconds 2505s Creating storage structures: 16 entries in 256 bytes space. 2505s Storage structures created in: 0.119 seconds 2505s 2505s Hashing NZ_GG705070.fna forwards 2506s 0%......... (T -0.685 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 10%......... (T -0.627 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 20%......... (T -0.484 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 30%......... (T -0.359 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 40%......... (T -0.273 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 50%......... (T -0.202 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 60%......... (T -0.149 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 70%......... (T -0.093 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 80%......... (T -0.043 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 90%......... 2506s Hashing NZ_GG705070.fna backwards 2506s 0%......... (T -0.400 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 10%......... (T -0.246 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 20%......... (T -0.284 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 30%......... (T -0.240 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 40%......... (T -0.201 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 50%......... (T -0.155 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 60%......... (T -0.134 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 70%......... (T -0.088 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 80%......... (T -0.047 seconds) ETA: Fri Mar 15 09:04:17 2024 2506s 90%......... 2506s Hashing NZ_GG705070.gbk forwards 2507s 0%......... (T -0.987 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 10%......... (T -0.788 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 20%......... (T -0.478 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 30%......... (T -0.374 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 40%......... (T -0.275 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 50%......... (T -0.221 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 60%......... (T -0.165 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 70%......... (T -0.104 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 80%......... (T -0.055 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 90%......... 2507s Hashing NZ_GG705070.gbk backwards 2507s 0%......... (T -0.398 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 10%......... (T -0.293 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 20%......... (T -0.435 seconds) ETA: Fri Mar 15 09:04:19 2024 2507s 30%......... (T -0.356 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 40%......... (T -0.312 seconds) ETA: Fri Mar 15 09:04:19 2024 2507s 50%......... (T -0.254 seconds) ETA: Fri Mar 15 09:04:19 2024 2507s 60%......... (T -0.166 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 70%......... (T -0.110 seconds) ETA: Fri Mar 15 09:04:18 2024 2507s 80%......... (T -0.054 seconds) ETA: Fri Mar 15 09:04:18 2024 2508s 90%......... 2508s Initial hashing took: 2.056 seconds 2508s Extracting anchors from hash-space. 2508s (T -5.243 seconds) ETA: Fri Mar 15 09:04:24 2024 2509s 6%. (T -6.881 seconds) ETA: Fri Mar 15 09:04:27 2024 2510s 18%. (T -5.012 seconds) ETA: Fri Mar 15 09:04:26 2024 2510s 31%. (T -3.885 seconds) ETA: Fri Mar 15 09:04:25 2024 2511s 43%. (T -2.511 seconds) ETA: Fri Mar 15 09:04:24 2024 2512s 56%. (T -1.895 seconds) ETA: Fri Mar 15 09:04:24 2024 2512s 68%. (T -1.145 seconds) ETA: Fri Mar 15 09:04:24 2024 2514s 81%. (T -0.482 seconds) ETA: Fri Mar 15 09:04:25 2024 2514s 93%. 2514s Anchor extraction completed in: 6.630 seconds 2514s Total anchors: 0 2514s Anchor extraction + merge time: 6.632 seconds 2514s Total processing time: 14.634 seconds 2514s Writing anchors... 2514s Total seeds used in anchors: 16 2514s Hash performance: 2514s Keys used: 16 out of 16 possible (100.00%). 2514s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2514s Average pigeons per pigeon hole: 1 2515s Writing 16 repeats...Output writing finished in: 0.916 seconds 2515s Total time: 15.550 seconds 2515s Murasaki finished! 2515s PASSED MURASAKI 2515s 2515s Testing Genepare on NZ_GG705070.fna 2515s 1001 2515s PASSED GENEPARSE 2515s 2516s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2516s Testing mbfa on NZ_GG705070.fna 2517s PASSED mbfa 2517s 2517s Test Murasaki on NZ_GG705071.fna 2517s Verbosity level is: 0 2517s Writing to: output/test 2517s Pattern is: 101 2517s Max usable hash bits: 27 2517s Hit filter is: 0 2517s Hash table type is: EcoHash 2517s Hashing every: 1 base 2517s Histogram detail is: 0 2517s Hashing function is: 3 2517s Collision profiling is: disabled 2517s Repeats are: unmasked 2517s Mergefilter is at: 100 2517s Random seed: 1710493468 (automatic) 2517s Bitscore output: on 2517s Leave status records: no 2517s Join neighbors is: off 2517s Target memory is: 1.28 GB 2517s Retain members is: true 2517s Store repeatmap? yes 2517s Reverse complement data is generated on the fly 2517s Rifts allowed: 0 2517s Fuzzy Extension: yes 2517s Score by minimum pair: yes 2517s Gapped anchors: no 2517s Large sequence support is: enabled => seqpos is 8 bytes 2517s Murasaki version 1.68.6 (LARGESEQ) 2517s Loading NZ_GG705071.fna 2517s Read 48160bp (47.03 KBp) in 0.071 seconds (661.9 KBp/s) 2517s Done with forward strand (49526bp). Preparing reverse complement... 2517s <-> Reversing metdata. 2517s Done. 2517s Seq NZ_GG705071.fna loaded. 48.37 KB 2517s Loading NZ_GG705071.gbk 2517s Read 48160bp (47.03 KBp) in 0.135 seconds (347.2 KBp/s) 2517s Done with forward strand (49526bp). Preparing reverse complement... 2517s <-> Reversing metdata. 2517s Done. 2517s Seq NZ_GG705071.gbk loaded. 48.37 KB 2517s Sequence loading took: 0.223 seconds 2517s Forward frequencies: A:33.2766% C:16.8958% G:18.0731% T:31.7546% 2517s Global base frequencies: A/T:65.0311% C/G:34.9689% 2517s Pat: 3 bases long with weight 2 2517s 1 101 2517s Computing hash parameters... 2517s Using 4 hashbits 2517s 0%......... (T -2.163 seconds) ETA: Fri Mar 15 09:04:30 2024 2518s 10%......... (T -2.493 seconds) ETA: Fri Mar 15 09:04:31 2024 2518s 20%......... (T -2.367 seconds) ETA: Fri Mar 15 09:04:31 2024 2518s 30%......... (T -1.855 seconds) ETA: Fri Mar 15 09:04:31 2024 2519s 40%......... (T -1.595 seconds) ETA: Fri Mar 15 09:04:31 2024 2519s 50%......... (T -1.341 seconds) ETA: Fri Mar 15 09:04:31 2024 2519s 60%......... (T -1.003 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 70%......... (T -0.654 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 80%......... (T -0.298 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 91%........ 2520s Acceptable hash function found after 1000 cycles. 2520s Best uses 2/2 bases and has 0 empties from 2 inputs. 2520s Score: 0.96875 (cf. worst: -4.51562) 2520s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2520s Total correlation penalty: 0 2520s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2520s 10 2520s == 2520s w[ 0]>>29: -.C 2520s w[ 0]>>30: A.- 2520s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 2520s Ecolist (optimistic): Expcted entries per list: 14 2520s Ecolist (optimistic): Minimum chunks per list: 3 2520s Would take minimum 256.000000 bytes to make perfect hash. 2520s Hashing 188.12 KB of sequence requires: 2520s ~ linear (in seq length) hashing cost of 446.80 KB 2520s ~ linear (in seq length) expected anchor cost of 4.53 MB 2520s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2520s Expected memory usage (without anchors): 447.05 KB 2520s Expected memory usage (with anchors): 4.97 MB 2520s Hash parameters computed in 3.332 seconds 2520s Creating storage structures: 16 entries in 256 bytes space. 2520s Storage structures created in: 0.026 seconds 2520s 2520s Hashing NZ_GG705071.fna forwards 2520s 0%......... (T -0.060 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 10%......... (T -0.045 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 20%......... (T -0.038 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 30%......... (T -0.035 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 40%......... (T -0.032 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 50%......... (T -0.037 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 60%......... (T -0.036 seconds) ETA: Fri Mar 15 09:04:31 2024 2520s 70%......... (T -0.046 seconds) ETA: Fri Mar 15 09:04:31 2024 2521s 80%......... (T -0.023 seconds) ETA: Fri Mar 15 09:04:31 2024 2521s 90%......... 2521s Hashing NZ_GG705071.fna backwards 2521s 0%......... (T -0.881 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 10%......... (T -0.641 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 20%......... (T -0.402 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 30%......... (T -0.290 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 40%......... (T -0.203 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 50%......... (T -0.176 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 60%......... (T -0.126 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 70%......... (T -0.079 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 80%......... (T -0.038 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 90%......... 2521s Hashing NZ_GG705071.gbk forwards 2521s 0%......... (T -0.276 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 10%......... (T -0.181 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 20%......... (T -0.172 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 30%......... (T -0.268 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 40%......... (T -0.199 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 50%......... (T -0.146 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 60%......... (T -0.106 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 70%......... (T -0.069 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 80%......... (T -0.034 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 90%......... 2521s Hashing NZ_GG705071.gbk backwards 2521s 0%......... (T -0.256 seconds) ETA: Fri Mar 15 09:04:33 2024 2521s 10%......... (T -0.187 seconds) ETA: Fri Mar 15 09:04:33 2024 2521s 20%......... (T -0.140 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 30%......... (T -0.110 seconds) ETA: Fri Mar 15 09:04:32 2024 2521s 40%......... (T -0.107 seconds) ETA: Fri Mar 15 09:04:33 2024 2521s 50%......... (T -0.100 seconds) ETA: Fri Mar 15 09:04:33 2024 2521s 60%......... (T -0.071 seconds) ETA: Fri Mar 15 09:04:33 2024 2522s 70%......... (T -0.048 seconds) ETA: Fri Mar 15 09:04:33 2024 2522s 80%......... (T -0.024 seconds) ETA: Fri Mar 15 09:04:33 2024 2522s 90%......... 2522s Initial hashing took: 1.253 seconds 2522s Extracting anchors from hash-space. 2522s (T -1.884 seconds) ETA: Fri Mar 15 09:04:35 2024 2523s 6%. (T -5.007 seconds) ETA: Fri Mar 15 09:04:39 2024 2523s 18%. (T -3.979 seconds) ETA: Fri Mar 15 09:04:38 2024 2525s 31%. (T -4.431 seconds) ETA: Fri Mar 15 09:04:40 2024 2526s 43%. (T -3.333 seconds) ETA: Fri Mar 15 09:04:40 2024 2528s 56%. (T -2.833 seconds) ETA: Fri Mar 15 09:04:41 2024 2528s 68%. (T -1.477 seconds) ETA: Fri Mar 15 09:04:40 2024 2528s 81%. (T -0.516 seconds) ETA: Fri Mar 15 09:04:40 2024 2529s 93%. 2529s Anchor extraction completed in: 7.200 seconds 2529s Total anchors: 0 2529s Anchor extraction + merge time: 7.214 seconds 2529s Total processing time: 12.096 seconds 2529s Writing anchors... 2529s Total seeds used in anchors: 16 2529s Hash performance: 2529s Keys used: 16 out of 16 possible (100.00%). 2529s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2529s Average pigeons per pigeon hole: 1 2531s Writing 16 repeats...Output writing finished in: 1.907 seconds 2531s Total time: 14.002 seconds 2531s Murasaki finished! 2531s PASSED MURASAKI 2531s 2531s Testing Genepare on NZ_GG705071.fna 2531s 1001 2531s PASSED GENEPARSE 2531s 2534s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2534s Testing mbfa on NZ_GG705071.fna 2534s PASSED mbfa 2534s 2534s Test Murasaki on NZ_GG705072.fna 2534s Verbosity level is: 0 2534s Writing to: output/test 2534s Pattern is: 101 2534s Max usable hash bits: 27 2534s Hit filter is: 0 2534s Hash table type is: EcoHash 2534s Hashing every: 1 base 2534s Histogram detail is: 0 2534s Hashing function is: 3 2534s Collision profiling is: disabled 2534s Repeats are: unmasked 2534s Mergefilter is at: 100 2534s Random seed: 1710493485 (automatic) 2534s Bitscore output: on 2534s Leave status records: no 2534s Join neighbors is: off 2534s Target memory is: 1.28 GB 2534s Retain members is: true 2534s Store repeatmap? yes 2534s Reverse complement data is generated on the fly 2534s Rifts allowed: 0 2534s Fuzzy Extension: yes 2534s Score by minimum pair: yes 2534s Gapped anchors: no 2534s Large sequence support is: enabled => seqpos is 8 bytes 2534s Murasaki version 1.68.6 (LARGESEQ) 2534s Loading NZ_GG705072.fna 2534s Read 25963bp (25.35 KBp) in 0.175 seconds (145.3 KBp/s) 2534s Done with forward strand (35758bp). Preparing reverse complement... 2534s <-> Reversing metdata. 2534s Done. 2534s Seq NZ_GG705072.fna loaded. 34.92 KB 2534s Loading NZ_GG705072.gbk 2534s Read 25963bp (25.35 KBp) in 0.114 seconds (223.2 KBp/s) 2534s Done with forward strand (35758bp). Preparing reverse complement... 2534s <-> Reversing metdata. 2534s Done. 2534s Seq NZ_GG705072.gbk loaded. 34.92 KB 2534s Sequence loading took: 0.351 seconds 2534s Forward frequencies: A:29.6422% C:19.6742% G:18.2259% T:32.4577% 2534s Global base frequencies: A/T:62.0999% C/G:37.9001% 2534s Pat: 3 bases long with weight 2 2534s 1 101 2534s Computing hash parameters... 2534s Using 4 hashbits 2535s 0%......... (T -6.483 seconds) ETA: Fri Mar 15 09:04:53 2024 2536s 10%......... (T -5.011 seconds) ETA: Fri Mar 15 09:04:52 2024 2536s 20%......... (T -4.733 seconds) ETA: Fri Mar 15 09:04:52 2024 2537s 30%......... (T -3.495 seconds) ETA: Fri Mar 15 09:04:51 2024 2537s 40%......... (T -2.911 seconds) ETA: Fri Mar 15 09:04:51 2024 2538s 50%......... (T -2.281 seconds) ETA: Fri Mar 15 09:04:51 2024 2538s 60%......... (T -1.716 seconds) ETA: Fri Mar 15 09:04:51 2024 2539s 70%......... (T -1.192 seconds) ETA: Fri Mar 15 09:04:51 2024 2540s 80%......... (T -0.531 seconds) ETA: Fri Mar 15 09:04:51 2024 2540s 91%........ 2540s Acceptable hash function found after 1000 cycles. 2540s Best uses 2/2 bases and has 0 empties from 2 inputs. 2540s Score: 0.96875 (cf. worst: -4.51562) 2540s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2540s Total correlation penalty: 0 2540s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2540s 10 2540s == 2540s w[ 0]>>29: -.C 2540s w[ 0]>>30: A.- 2540s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 2540s Ecolist (optimistic): Expcted entries per list: 13 2540s Ecolist (optimistic): Minimum chunks per list: 3 2540s Would take minimum 256.000000 bytes to make perfect hash. 2540s Hashing 101.42 KB of sequence requires: 2540s ~ linear (in seq length) hashing cost of 240.86 KB 2540s ~ linear (in seq length) expected anchor cost of 3.27 MB 2540s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2540s Expected memory usage (without anchors): 241.11 KB 2540s Expected memory usage (with anchors): 3.51 MB 2540s Hash parameters computed in 5.908 seconds 2540s Creating storage structures: 16 entries in 256 bytes space. 2540s Storage structures created in: 0.038 seconds 2540s 2540s Hashing NZ_GG705072.fna forwards 2540s 0%......... (T -0.318 seconds) ETA: Fri Mar 15 09:04:52 2024 2540s 10%......... (T -0.256 seconds) ETA: Fri Mar 15 09:04:52 2024 2540s 20%......... (T -0.166 seconds) ETA: Fri Mar 15 09:04:52 2024 2540s 30%......... (T -0.138 seconds) ETA: Fri Mar 15 09:04:52 2024 2540s 40%......... (T -0.102 seconds) ETA: Fri Mar 15 09:04:51 2024 2540s 50%......... (T -0.092 seconds) ETA: Fri Mar 15 09:04:52 2024 2540s 60%......... (T -0.060 seconds) ETA: Fri Mar 15 09:04:51 2024 2541s 70%......... (T -0.050 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 80%......... (T -0.030 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 90%......... 2541s Hashing NZ_GG705072.fna backwards 2541s 0%......... (T -0.077 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 10%......... (T -0.084 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 20%......... (T -0.173 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 30%......... (T -0.114 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 40%......... (T -0.111 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 50%......... (T -0.084 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 60%......... (T -0.074 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 70%......... (T -0.057 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 80%......... (T -0.027 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 90%......... 2541s Hashing NZ_GG705072.gbk forwards 2541s 0%......... (T -0.301 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 10%......... (T -0.480 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 20%......... (T -0.356 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 30%......... (T -0.254 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 40%......... (T -0.171 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 50%......... (T -0.117 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 60%......... (T -0.079 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 70%......... (T -0.050 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 80%......... (T -0.024 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 90%......... 2541s Hashing NZ_GG705072.gbk backwards 2541s 0%......... (T -0.200 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 10%......... (T -0.146 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 20%......... (T -0.123 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 30%......... (T -0.091 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 40%......... (T -0.078 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 50%......... (T -0.056 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 60%......... (T -0.043 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 70%......... (T -0.030 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 80%......... (T -0.015 seconds) ETA: Fri Mar 15 09:04:52 2024 2541s 90%......... 2541s Initial hashing took: 1.078 seconds 2541s Extracting anchors from hash-space. 2542s (T -2.887 seconds) ETA: Fri Mar 15 09:04:55 2024 2542s 6%. (T -2.928 seconds) ETA: Fri Mar 15 09:04:56 2024 2542s 18%. (T -2.077 seconds) ETA: Fri Mar 15 09:04:55 2024 2543s 31%. (T -1.587 seconds) ETA: Fri Mar 15 09:04:55 2024 2543s 43%. (T -1.129 seconds) ETA: Fri Mar 15 09:04:55 2024 2543s 56%. (T -0.808 seconds) ETA: Fri Mar 15 09:04:55 2024 2543s 68%. (T -0.467 seconds) ETA: Fri Mar 15 09:04:55 2024 2544s 81%. (T -0.193 seconds) ETA: Fri Mar 15 09:04:55 2024 2544s 93%. 2544s Anchor extraction completed in: 2.952 seconds 2544s Total anchors: 0 2544s Anchor extraction + merge time: 2.952 seconds 2544s Total processing time: 10.331 seconds 2544s Writing anchors... 2544s Total seeds used in anchors: 16 2544s Hash performance: 2544s Keys used: 16 out of 16 possible (100.00%). 2544s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2544s Average pigeons per pigeon hole: 1 2545s Writing 16 repeats...Output writing finished in: 0.908 seconds 2545s Total time: 11.239 seconds 2545s Murasaki finished! 2545s PASSED MURASAKI 2545s 2545s Testing Genepare on NZ_GG705072.fna 2545s 1001 2545s PASSED GENEPARSE 2545s 2548s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2549s Testing mbfa on NZ_GG705072.fna 2549s PASSED mbfa 2549s 2549s Test Murasaki on NZ_GG705073.fna 2549s Verbosity level is: 0 2549s Writing to: output/test 2549s Pattern is: 101 2549s Max usable hash bits: 27 2549s Hit filter is: 0 2549s Hash table type is: EcoHash 2549s Hashing every: 1 base 2549s Histogram detail is: 0 2549s Hashing function is: 3 2549s Collision profiling is: disabled 2549s Repeats are: unmasked 2549s Mergefilter is at: 100 2549s Random seed: 1710493500 (automatic) 2549s Bitscore output: on 2549s Leave status records: no 2549s Join neighbors is: off 2549s Target memory is: 1.28 GB 2549s Retain members is: true 2549s Store repeatmap? yes 2549s Reverse complement data is generated on the fly 2549s Rifts allowed: 0 2549s Fuzzy Extension: yes 2549s Score by minimum pair: yes 2549s Gapped anchors: no 2549s Large sequence support is: enabled => seqpos is 8 bytes 2550s Murasaki version 1.68.6 (LARGESEQ) 2550s Loading NZ_GG705073.fna 2550s Read 29370bp (28.68 KBp) in 0.422 seconds (68.0 KBp/s) 2550s Done with forward strand (32703bp). Preparing reverse complement... 2550s <-> Reversing metdata. 2550s Done. 2550s Seq NZ_GG705073.fna loaded. 31.94 KB 2550s Loading NZ_GG705073.gbk 2550s Read 29370bp (28.68 KBp) in 0.159 seconds (179.8 KBp/s) 2550s Done with forward strand (32703bp). Preparing reverse complement... 2550s <-> Reversing metdata. 2550s Done. 2550s Seq NZ_GG705073.gbk loaded. 31.94 KB 2550s Sequence loading took: 0.710 seconds 2550s Forward frequencies: A:31.0964% C:18.2635% G:17.6166% T:33.0235% 2550s Global base frequencies: A/T:64.1199% C/G:35.8801% 2550s Pat: 3 bases long with weight 2 2550s 1 101 2550s Computing hash parameters... 2550s Using 4 hashbits 2552s 0%......... (T -14.112 seconds) ETA: Fri Mar 15 09:05:17 2024 2553s 10%......... (T -9.864 seconds) ETA: Fri Mar 15 09:05:14 2024 2554s 20%......... (T -7.869 seconds) ETA: Fri Mar 15 09:05:12 2024 2554s 30%......... (T -5.644 seconds) ETA: Fri Mar 15 09:05:11 2024 2555s 40%......... (T -4.271 seconds) ETA: Fri Mar 15 09:05:10 2024 2556s 50%......... (T -3.594 seconds) ETA: Fri Mar 15 09:05:10 2024 2556s 60%......... (T -2.611 seconds) ETA: Fri Mar 15 09:05:10 2024 2557s 70%......... (T -1.716 seconds) ETA: Fri Mar 15 09:05:10 2024 2558s 80%......... (T -0.759 seconds) ETA: Fri Mar 15 09:05:10 2024 2558s 91%........ 2558s Acceptable hash function found after 1000 cycles. 2558s Best uses 2/2 bases and has 0 empties from 2 inputs. 2558s Score: 0.96875 (cf. worst: -4.51562) 2558s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2558s Total correlation penalty: 0 2558s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2558s 10 2558s == 2558s w[ 0]>>29: -.C 2558s w[ 0]>>30: A.- 2558s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1) 2559s Ecolist (optimistic): Expcted entries per list: 13 2559s Ecolist (optimistic): Minimum chunks per list: 3 2559s Would take minimum 256.000000 bytes to make perfect hash. 2559s Hashing 114.73 KB of sequence requires: 2559s ~ linear (in seq length) hashing cost of 258.13 KB 2559s ~ linear (in seq length) expected anchor cost of 2.99 MB 2559s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2559s Expected memory usage (without anchors): 258.38 KB 2559s Expected memory usage (with anchors): 3.25 MB 2559s Hash parameters computed in 8.345 seconds 2559s Creating storage structures: 16 entries in 256 bytes space. 2559s Storage structures created in: 0.032 seconds 2559s 2559s Hashing NZ_GG705073.fna forwards 2559s 0%......... (T -0.300 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 10%......... (T -0.148 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 20%......... (T -0.247 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 30%......... (T -0.165 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 40%......... (T -0.178 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 50%......... (T -0.124 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 60%......... (T -0.101 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 70%......... (T -0.069 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 80%......... (T -0.034 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 90%......... 2559s Hashing NZ_GG705073.fna backwards 2559s 0%......... (T -0.363 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 10%......... (T -0.379 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 20%......... (T -0.407 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 30%......... (T -0.267 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 40%......... (T -0.211 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 50%......... (T -0.157 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 60%......... (T -0.129 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 70%......... (T -0.083 seconds) ETA: Fri Mar 15 09:05:10 2024 2559s 80%......... (T -0.054 seconds) ETA: Fri Mar 15 09:05:10 2024 2560s 90%......... 2560s Hashing NZ_GG705073.gbk forwards 2560s 0%......... (T -1.016 seconds) ETA: Fri Mar 15 09:05:12 2024 2560s 10%......... (T -0.725 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 20%......... (T -0.547 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 30%......... (T -0.398 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 40%......... (T -0.296 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 50%......... (T -0.268 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 60%......... (T -0.184 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 70%......... (T -0.114 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 80%......... (T -0.051 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 90%......... 2560s Hashing NZ_GG705073.gbk backwards 2560s 0%......... (T -0.067 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 10%......... (T -0.110 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 20%......... (T -0.074 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 30%......... (T -0.136 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 40%......... (T -0.174 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 50%......... (T -0.155 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 60%......... (T -0.104 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 70%......... (T -0.084 seconds) ETA: Fri Mar 15 09:05:11 2024 2560s 80%......... (T -0.046 seconds) ETA: Fri Mar 15 09:05:11 2024 2561s 90%......... 2561s Initial hashing took: 2.026 seconds 2561s Extracting anchors from hash-space. 2561s (T -7.903 seconds) ETA: Fri Mar 15 09:05:20 2024 2562s 6%. (T -5.026 seconds) ETA: Fri Mar 15 09:05:18 2024 2562s 18%. (T -3.711 seconds) ETA: Fri Mar 15 09:05:17 2024 2563s 31%. (T -2.638 seconds) ETA: Fri Mar 15 09:05:16 2024 2563s 43%. (T -1.906 seconds) ETA: Fri Mar 15 09:05:16 2024 2563s 56%. (T -1.256 seconds) ETA: Fri Mar 15 09:05:15 2024 2564s 68%. (T -0.777 seconds) ETA: Fri Mar 15 09:05:16 2024 2564s 81%. (T -0.276 seconds) ETA: Fri Mar 15 09:05:15 2024 2564s 93%. 2564s Anchor extraction completed in: 3.897 seconds 2564s Total anchors: 0 2564s Anchor extraction + merge time: 3.898 seconds 2564s Total processing time: 15.017 seconds 2564s Writing anchors... 2564s Total seeds used in anchors: 16 2565s Hash performance: 2565s Keys used: 16 out of 16 possible (100.00%). 2565s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2565s Average pigeons per pigeon hole: 1 2565s Writing 16 repeats...Output writing finished in: 1.043 seconds 2566s Total time: 16.060 seconds 2566s Murasaki finished! 2566s PASSED MURASAKI 2566s 2566s Testing Genepare on NZ_GG705073.fna 2566s 1001 2566s PASSED GENEPARSE 2566s 2568s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2569s Testing mbfa on NZ_GG705073.fna 2569s PASSED mbfa 2569s 2569s Test Murasaki on NZ_GG705074.fna 2569s Verbosity level is: 0 2569s Writing to: output/test 2569s Pattern is: 101 2569s Max usable hash bits: 27 2569s Hit filter is: 0 2569s Hash table type is: EcoHash 2569s Hashing every: 1 base 2569s Histogram detail is: 0 2569s Hashing function is: 3 2569s Collision profiling is: disabled 2569s Repeats are: unmasked 2569s Mergefilter is at: 100 2569s Random seed: 1710493520 (automatic) 2569s Bitscore output: on 2569s Leave status records: no 2569s Join neighbors is: off 2569s Target memory is: 1.28 GB 2569s Retain members is: true 2569s Store repeatmap? yes 2569s Reverse complement data is generated on the fly 2569s Rifts allowed: 0 2569s Fuzzy Extension: yes 2569s Score by minimum pair: yes 2569s Gapped anchors: no 2569s Large sequence support is: enabled => seqpos is 8 bytes 2569s Murasaki version 1.68.6 (LARGESEQ) 2569s Loading NZ_GG705074.fna 2569s Read 27463bp (26.82 KBp) in 0.049 seconds (547.1 KBp/s) 2569s Done with forward strand (27739bp). Preparing reverse complement... 2569s <-> Reversing metdata. 2569s Done. 2569s Seq NZ_GG705074.fna loaded. 27.09 KB 2569s Loading NZ_GG705074.gbk 2569s Read 27463bp (26.82 KBp) in 0.121 seconds (222.3 KBp/s) 2570s Done with forward strand (27739bp). Preparing reverse complement... 2570s <-> Reversing metdata. 2570s Done. 2570s Seq NZ_GG705074.gbk loaded. 27.09 KB 2570s Sequence loading took: 0.209 seconds 2570s Forward frequencies: A:29.7418% C:22.6122% G:19.164% T:28.482% 2570s Global base frequencies: A/T:58.2238% C/G:41.7762% 2570s Pat: 3 bases long with weight 2 2570s 1 101 2570s Computing hash parameters... 2570s Using 4 hashbits 2570s 0%......... (T -7.847 seconds) ETA: Fri Mar 15 09:05:29 2024 2571s 10%......... (T -6.827 seconds) ETA: Fri Mar 15 09:05:29 2024 2572s 20%......... (T -6.412 seconds) ETA: Fri Mar 15 09:05:30 2024 2573s 30%......... (T -4.896 seconds) ETA: Fri Mar 15 09:05:29 2024 2573s 40%......... (T -3.789 seconds) ETA: Fri Mar 15 09:05:28 2024 2574s 50%......... (T -3.073 seconds) ETA: Fri Mar 15 09:05:28 2024 2575s 60%......... (T -2.301 seconds) ETA: Fri Mar 15 09:05:28 2024 2575s 70%......... (T -1.477 seconds) ETA: Fri Mar 15 09:05:28 2024 2576s 80%......... (T -0.632 seconds) ETA: Fri Mar 15 09:05:28 2024 2576s 91%........ 2576s Acceptable hash function found after 1000 cycles. 2576s Best uses 2/2 bases and has 0 empties from 2 inputs. 2576s Score: 0.96875 (cf. worst: -4.51562) 2576s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2576s Total correlation penalty: 0 2576s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2576s 10 2576s == 2576s w[ 0]>>29: -.C 2576s w[ 0]>>30: A.- 2576s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1) 2576s Ecolist (optimistic): Expcted entries per list: 13 2576s Ecolist (optimistic): Minimum chunks per list: 3 2576s Would take minimum 256.000000 bytes to make perfect hash. 2576s Hashing 107.28 KB of sequence requires: 2576s ~ linear (in seq length) hashing cost of 241.37 KB 2576s ~ linear (in seq length) expected anchor cost of 2.54 MB 2576s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2576s Expected memory usage (without anchors): 241.62 KB 2576s Expected memory usage (with anchors): 2.78 MB 2576s Hash parameters computed in 6.643 seconds 2576s Creating storage structures: 16 entries in 256 bytes space. 2576s Storage structures created in: 0.007 seconds 2576s 2576s Hashing NZ_GG705074.fna forwards 2576s 0%......... (T -0.065 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 10%......... (T -0.039 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 20%......... (T -0.042 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 30%......... (T -0.044 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 40%......... (T -0.033 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 50%......... (T -0.027 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 70%......... (T -0.016 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 80%......... (T -0.008 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 90%......... 2576s Hashing NZ_GG705074.fna backwards 2576s 0%......... (T -0.198 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 10%......... (T -0.104 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 20%......... (T -0.090 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 30%......... (T -0.100 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 40%......... (T -0.071 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 50%......... (T -0.051 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 60%......... (T -0.042 seconds) ETA: Fri Mar 15 09:05:27 2024 2576s 70%......... (T -0.038 seconds) ETA: Fri Mar 15 09:05:27 2024 2577s 80%......... (T -0.023 seconds) ETA: Fri Mar 15 09:05:27 2024 2577s 90%......... 2577s Hashing NZ_GG705074.gbk forwards 2577s 0%......... (T -0.238 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 10%......... (T -0.282 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 20%......... (T -0.378 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 30%......... (T -0.305 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 40%......... (T -0.212 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 50%......... (T -0.151 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 60%......... (T -0.103 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 70%......... (T -0.069 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 80%......... (T -0.037 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 90%......... 2577s Hashing NZ_GG705074.gbk backwards 2577s 0%......... (T -0.623 seconds) ETA: Fri Mar 15 09:05:29 2024 2577s 10%......... (T -0.498 seconds) ETA: Fri Mar 15 09:05:29 2024 2577s 20%......... (T -0.304 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 30%......... (T -0.220 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 40%......... (T -0.194 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 50%......... (T -0.187 seconds) ETA: Fri Mar 15 09:05:28 2024 2577s 60%......... (T -0.168 seconds) ETA: Fri Mar 15 09:05:28 2024 2578s 70%......... (T -0.139 seconds) ETA: Fri Mar 15 09:05:29 2024 2578s 80%......... (T -0.064 seconds) ETA: Fri Mar 15 09:05:29 2024 2578s 90%......... 2578s Initial hashing took: 1.408 seconds 2578s Extracting anchors from hash-space. 2578s (T -5.138 seconds) ETA: Fri Mar 15 09:05:34 2024 2578s 6%. (T -3.665 seconds) ETA: Fri Mar 15 09:05:33 2024 2579s 18%. (T -3.739 seconds) ETA: Fri Mar 15 09:05:34 2024 2580s 31%. (T -2.758 seconds) ETA: Fri Mar 15 09:05:33 2024 2580s 43%. (T -2.114 seconds) ETA: Fri Mar 15 09:05:33 2024 2581s 56%. (T -1.558 seconds) ETA: Fri Mar 15 09:05:33 2024 2581s 68%. (T -0.861 seconds) ETA: Fri Mar 15 09:05:33 2024 2582s 81%. (T -0.298 seconds) ETA: Fri Mar 15 09:05:33 2024 2582s 93%. 2582s Anchor extraction completed in: 4.039 seconds 2582s Total anchors: 0 2582s Anchor extraction + merge time: 4.040 seconds 2582s Total processing time: 12.348 seconds 2582s Writing anchors... 2582s Total seeds used in anchors: 16 2582s Hash performance: 2582s Keys used: 16 out of 16 possible (100.00%). 2582s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2582s Average pigeons per pigeon hole: 1 2583s Writing 16 repeats...Output writing finished in: 1.835 seconds 2583s Total time: 14.182 seconds 2583s Murasaki finished! 2584s PASSED MURASAKI 2584s 2584s Testing Genepare on NZ_GG705074.fna 2584s 1001 2584s PASSED GENEPARSE 2584s 2587s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2588s Testing mbfa on NZ_GG705074.fna 2588s PASSED mbfa 2588s 2588s Test Murasaki on NZ_GG705075.fna 2588s Verbosity level is: 0 2588s Writing to: output/test 2588s Pattern is: 101 2588s Max usable hash bits: 27 2588s Hit filter is: 0 2588s Hash table type is: EcoHash 2588s Hashing every: 1 base 2588s Histogram detail is: 0 2588s Hashing function is: 3 2588s Collision profiling is: disabled 2588s Repeats are: unmasked 2588s Mergefilter is at: 100 2588s Random seed: 1710493539 (automatic) 2588s Bitscore output: on 2588s Leave status records: no 2588s Join neighbors is: off 2588s Target memory is: 1.28 GB 2588s Retain members is: true 2588s Store repeatmap? yes 2588s Reverse complement data is generated on the fly 2588s Rifts allowed: 0 2588s Fuzzy Extension: yes 2588s Score by minimum pair: yes 2588s Gapped anchors: no 2588s Large sequence support is: enabled => seqpos is 8 bytes 2588s Murasaki version 1.68.6 (LARGESEQ) 2588s Loading NZ_GG705075.fna 2588s Read 10982bp (10.72 KBp) in 0.086 seconds (125.1 KBp/s) 2588s Done with forward strand (12466bp). Preparing reverse complement... 2588s <-> Reversing metdata. 2588s Done. 2588s Seq NZ_GG705075.fna loaded. 12.17 KB 2588s Loading NZ_GG705075.gbk 2588s Read 10982bp (10.72 KBp) in 0.074 seconds (144.4 KBp/s) 2589s Done with forward strand (12466bp). Preparing reverse complement... 2589s <-> Reversing metdata. 2589s Done. 2589s Seq NZ_GG705075.gbk loaded. 12.17 KB 2589s Sequence loading took: 0.207 seconds 2589s Forward frequencies: A:32.1526% C:18.9765% G:18.4484% T:30.4225% 2589s Global base frequencies: A/T:62.5751% C/G:37.4249% 2589s Pat: 3 bases long with weight 2 2589s 1 101 2589s Computing hash parameters... 2589s Using 4 hashbits 2590s 0%......... (T -8.668 seconds) ETA: Fri Mar 15 09:05:49 2024 2591s 10%......... (T -8.528 seconds) ETA: Fri Mar 15 09:05:50 2024 2592s 20%......... (T -7.536 seconds) ETA: Fri Mar 15 09:05:50 2024 2593s 30%......... (T -6.453 seconds) ETA: Fri Mar 15 09:05:50 2024 2594s 40%......... (T -5.140 seconds) ETA: Fri Mar 15 09:05:50 2024 2595s 50%......... (T -4.271 seconds) ETA: Fri Mar 15 09:05:50 2024 2596s 60%......... (T -3.116 seconds) ETA: Fri Mar 15 09:05:50 2024 2597s 70%......... (T -2.012 seconds) ETA: Fri Mar 15 09:05:50 2024 2597s 80%......... (T -0.874 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 91%........ 2598s Acceptable hash function found after 1000 cycles. 2598s Best uses 2/2 bases and has 0 empties from 2 inputs. 2598s Score: 0.96875 (cf. worst: -4.51562) 2598s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2598s Total correlation penalty: 0 2598s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2598s 10 2598s == 2598s w[ 0]>>29: -.C 2598s w[ 0]>>30: A.- 2598s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 2598s Ecolist (optimistic): Expcted entries per list: 12 2598s Ecolist (optimistic): Minimum chunks per list: 3 2598s Would take minimum 256.000000 bytes to make perfect hash. 2598s Hashing 42.90 KB of sequence requires: 2598s ~ linear (in seq length) hashing cost of 91.16 KB 2598s ~ linear (in seq length) expected anchor cost of 1.14 MB 2598s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2598s Expected memory usage (without anchors): 91.41 KB 2598s Expected memory usage (with anchors): 1.23 MB 2598s Hash parameters computed in 9.349 seconds 2598s Creating storage structures: 16 entries in 256 bytes space. 2598s Storage structures created in: 0.013 seconds 2598s 2598s Hashing NZ_GG705075.fna forwards 2598s 0%......... (T -0.178 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 10%......... (T -0.178 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 20%......... (T -0.170 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 30%......... (T -0.169 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 40%......... (T -0.123 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 50%......... (T -0.104 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 60%......... (T -0.072 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 70%......... (T -0.042 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 80%......... (T -0.021 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 90%......... 2598s Hashing NZ_GG705075.fna backwards 2598s 0%......... (T -0.133 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 10%......... (T -0.153 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 20%......... (T -0.194 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 30%......... (T -0.136 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 40%......... (T -0.100 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 50%......... (T -0.068 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 60%......... (T -0.051 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 70%......... (T -0.030 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 80%......... (T -0.015 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 90%......... 2598s Hashing NZ_GG705075.gbk forwards 2598s 0%......... (T -0.021 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 10%......... (T -0.048 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 20%......... (T -0.037 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 30%......... (T -0.040 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 40%......... (T -0.036 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 50%......... (T -0.026 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 60%......... (T -0.017 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 80%......... (T -0.008 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 90%......... 2598s Hashing NZ_GG705075.gbk backwards 2598s 0%......... (T -0.210 seconds) ETA: Fri Mar 15 09:05:50 2024 2598s 10%......... (T -0.136 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 20%......... (T -0.081 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 30%......... (T -0.054 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 40%......... (T -0.087 seconds) ETA: Fri Mar 15 09:05:49 2024 2598s 50%......... (T -0.085 seconds) ETA: Fri Mar 15 09:05:50 2024 2599s 60%......... (T -0.062 seconds) ETA: Fri Mar 15 09:05:50 2024 2599s 70%......... (T -0.037 seconds) ETA: Fri Mar 15 09:05:49 2024 2599s 80%......... (T -0.017 seconds) ETA: Fri Mar 15 09:05:49 2024 2599s 90%......... 2599s Initial hashing took: 0.643 seconds 2599s Extracting anchors from hash-space. 2599s (T -2.196 seconds) ETA: Fri Mar 15 09:05:52 2024 2599s 6%. (T -2.429 seconds) ETA: Fri Mar 15 09:05:52 2024 2599s 18%. (T -1.569 seconds) ETA: Fri Mar 15 09:05:52 2024 2599s 31%. (T -1.133 seconds) ETA: Fri Mar 15 09:05:51 2024 2600s 43%. (T -0.787 seconds) ETA: Fri Mar 15 09:05:51 2024 2600s 56%. (T -0.573 seconds) ETA: Fri Mar 15 09:05:51 2024 2600s 68%. (T -0.307 seconds) ETA: Fri Mar 15 09:05:51 2024 2600s 81%. (T -0.128 seconds) ETA: Fri Mar 15 09:05:51 2024 2601s 93%. 2601s Anchor extraction completed in: 1.991 seconds 2601s Total anchors: 0 2601s Anchor extraction + merge time: 2.000 seconds 2601s Total processing time: 12.231 seconds 2601s Writing anchors... 2601s Total seeds used in anchors: 16 2601s Hash performance: 2601s Keys used: 16 out of 16 possible (100.00%). 2601s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2601s Average pigeons per pigeon hole: 1 2601s Writing 16 repeats...Output writing finished in: 0.556 seconds 2601s Total time: 12.787 seconds 2601s Murasaki finished! 2601s PASSED MURASAKI 2601s 2601s Testing Genepare on NZ_GG705075.fna 2601s 1001 2601s PASSED GENEPARSE 2601s 2604s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2604s Testing mbfa on NZ_GG705075.fna 2604s PASSED mbfa 2605s 2605s Test Murasaki on NZ_GG705076.fna 2605s Verbosity level is: 0 2605s Writing to: output/test 2605s Pattern is: 101 2605s Max usable hash bits: 27 2605s Hit filter is: 0 2605s Hash table type is: EcoHash 2605s Hashing every: 1 base 2605s Histogram detail is: 0 2605s Hashing function is: 3 2605s Collision profiling is: disabled 2605s Repeats are: unmasked 2605s Mergefilter is at: 100 2605s Random seed: 1710493556 (automatic) 2605s Bitscore output: on 2605s Leave status records: no 2605s Join neighbors is: off 2605s Target memory is: 1.28 GB 2605s Retain members is: true 2605s Store repeatmap? yes 2605s Reverse complement data is generated on the fly 2605s Rifts allowed: 0 2605s Fuzzy Extension: yes 2605s Score by minimum pair: yes 2605s Gapped anchors: no 2605s Large sequence support is: enabled => seqpos is 8 bytes 2605s Murasaki version 1.68.6 (LARGESEQ) 2605s Loading NZ_GG705076.fna 2605s Read 9733bp (9.50 KBp) in 0.111 seconds (85.6 KBp/s) 2605s Done with forward strand (9753bp). Preparing reverse complement... 2605s <-> Reversing metdata. 2605s Done. 2605s Seq NZ_GG705076.fna loaded. 9.52 KB 2605s Loading NZ_GG705076.gbk 2605s Read 9733bp (9.50 KBp) in 0.059 seconds (162.1 KBp/s) 2605s Done with forward strand (9753bp). Preparing reverse complement... 2605s <-> Reversing metdata. 2605s Done. 2605s Seq NZ_GG705076.gbk loaded. 9.52 KB 2605s Sequence loading took: 0.235 seconds 2605s Forward frequencies: A:30.114% C:17.3122% G:17.2917% T:35.282% 2605s Global base frequencies: A/T:65.3961% C/G:34.6039% 2605s Pat: 3 bases long with weight 2 2605s 1 101 2605s Computing hash parameters... 2605s Using 4 hashbits 2606s 0%......... (T -4.103 seconds) ETA: Fri Mar 15 09:06:01 2024 2606s 10%......... (T -3.678 seconds) ETA: Fri Mar 15 09:06:01 2024 2607s 20%......... (T -3.661 seconds) ETA: Fri Mar 15 09:06:02 2024 2608s 30%......... (T -3.473 seconds) ETA: Fri Mar 15 09:06:02 2024 2608s 40%......... (T -3.130 seconds) ETA: Fri Mar 15 09:06:03 2024 2609s 50%......... (T -2.743 seconds) ETA: Fri Mar 15 09:06:03 2024 2611s 60%......... (T -2.151 seconds) ETA: Fri Mar 15 09:06:03 2024 2611s 70%......... (T -1.348 seconds) ETA: Fri Mar 15 09:06:03 2024 2611s 80%......... (T -0.584 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 91%........ 2612s Acceptable hash function found after 1000 cycles. 2612s Best uses 2/2 bases and has 0 empties from 2 inputs. 2612s Score: 0.96875 (cf. worst: -4.51562) 2612s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2612s Total correlation penalty: 0 2612s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2612s 10 2612s == 2612s w[ 0]>>29: -.C 2612s w[ 0]>>30: A.- 2612s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 2612s Ecolist (optimistic): Expcted entries per list: 12 2612s Ecolist (optimistic): Minimum chunks per list: 3 2612s Would take minimum 256.000000 bytes to make perfect hash. 2612s Hashing 38.02 KB of sequence requires: 2612s ~ linear (in seq length) hashing cost of 80.78 KB 2612s ~ linear (in seq length) expected anchor cost of 914.34 KB 2612s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2612s Expected memory usage (without anchors): 81.03 KB 2612s Expected memory usage (with anchors): 995.38 KB 2612s Hash parameters computed in 6.208 seconds 2612s Creating storage structures: 16 entries in 256 bytes space. 2612s Storage structures created in: 0.013 seconds 2612s 2612s Hashing NZ_GG705076.fna forwards 2612s 0%......... (T -0.017 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 10%......... (T -0.033 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 20%......... (T -0.038 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 30%......... (T -0.033 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 40%......... (T -0.024 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 50%......... (T -0.017 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 60%......... (T -0.019 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 90%......... 2612s Hashing NZ_GG705076.fna backwards 2612s 0%......... (T -0.020 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 10%......... (T -0.068 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 20%......... (T -0.043 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 30%......... (T -0.038 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 40%......... (T -0.027 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 50%......... (T -0.025 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 60%......... (T -0.017 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 70%......... (T -0.013 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 90%......... 2612s Hashing NZ_GG705076.gbk forwards 2612s 0%......... (T -0.093 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 10%......... (T -0.050 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 20%......... (T -0.070 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 30%......... (T -0.049 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 40%......... (T -0.043 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 50%......... (T -0.033 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 60%......... (T -0.033 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 70%......... (T -0.020 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 80%......... (T -0.009 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 90%......... 2612s Hashing NZ_GG705076.gbk backwards 2612s 0%......... (T -0.115 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 10%......... (T -0.068 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 20%......... (T -0.063 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 30%......... (T -0.043 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 40%......... (T -0.031 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 50%......... (T -0.034 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 60%......... (T -0.024 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 70%......... (T -0.015 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 80%......... (T -0.008 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 90%......... 2612s Initial hashing took: 0.378 seconds 2612s Extracting anchors from hash-space. 2612s (T -1.415 seconds) ETA: Fri Mar 15 09:06:04 2024 2612s 6%. (T -0.672 seconds) ETA: Fri Mar 15 09:06:04 2024 2612s 18%. (T -0.514 seconds) ETA: Fri Mar 15 09:06:04 2024 2612s 31%. (T -0.345 seconds) ETA: Fri Mar 15 09:06:03 2024 2612s 43%. (T -0.293 seconds) ETA: Fri Mar 15 09:06:04 2024 2612s 56%. (T -0.201 seconds) ETA: Fri Mar 15 09:06:04 2024 2612s 68%. (T -0.119 seconds) ETA: Fri Mar 15 09:06:04 2024 2613s 81%. (T -0.053 seconds) ETA: Fri Mar 15 09:06:04 2024 2613s 93%. 2613s Anchor extraction completed in: 0.848 seconds 2613s Total anchors: 0 2613s Anchor extraction + merge time: 0.849 seconds 2613s Total processing time: 7.688 seconds 2613s Writing anchors... 2613s Total seeds used in anchors: 16 2613s Hash performance: 2613s Keys used: 16 out of 16 possible (100.00%). 2613s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2613s Average pigeons per pigeon hole: 1 2613s Writing 16 repeats...Output writing finished in: 0.530 seconds 2613s Total time: 8.218 seconds 2613s Murasaki finished! 2613s PASSED MURASAKI 2613s 2613s Testing Genepare on NZ_GG705076.fna 2614s 1001 2614s PASSED GENEPARSE 2614s 2616s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2616s Testing mbfa on NZ_GG705076.fna 2617s PASSED mbfa 2617s 2617s Test Murasaki on NZ_GG705077.fna 2617s Verbosity level is: 0 2617s Writing to: output/test 2617s Pattern is: 101 2617s Max usable hash bits: 27 2617s Hit filter is: 0 2617s Hash table type is: EcoHash 2617s Hashing every: 1 base 2617s Histogram detail is: 0 2617s Hashing function is: 3 2617s Collision profiling is: disabled 2617s Repeats are: unmasked 2617s Mergefilter is at: 100 2617s Random seed: 1710493568 (automatic) 2617s Bitscore output: on 2617s Leave status records: no 2617s Join neighbors is: off 2617s Target memory is: 1.28 GB 2617s Retain members is: true 2617s Store repeatmap? yes 2617s Reverse complement data is generated on the fly 2617s Rifts allowed: 0 2617s Fuzzy Extension: yes 2617s Score by minimum pair: yes 2617s Gapped anchors: no 2617s Large sequence support is: enabled => seqpos is 8 bytes 2617s Murasaki version 1.68.6 (LARGESEQ) 2617s Loading NZ_GG705077.fna 2617s Read 9579bp (9.35 KBp) in 0.063 seconds (148.8 KBp/s) 2617s Done with forward strand (9752bp). Preparing reverse complement... 2617s <-> Reversing metdata. 2617s Done. 2617s Seq NZ_GG705077.fna loaded. 9.52 KB 2617s Loading NZ_GG705077.gbk 2617s Read 9579bp (9.35 KBp) in 0.084 seconds (111.4 KBp/s) 2617s Done with forward strand (9752bp). Preparing reverse complement... 2617s <-> Reversing metdata. 2617s Done. 2617s Seq NZ_GG705077.gbk loaded. 9.52 KB 2617s Sequence loading took: 0.195 seconds 2617s Forward frequencies: A:31.0366% C:19.2713% G:18.2169% T:31.4751% 2617s Global base frequencies: A/T:62.5117% C/G:37.4883% 2617s Pat: 3 bases long with weight 2 2617s 1 101 2617s Computing hash parameters... 2617s Using 4 hashbits 2618s 0%......... (T -5.088 seconds) ETA: Fri Mar 15 09:06:14 2024 2618s 10%......... (T -3.117 seconds) ETA: Fri Mar 15 09:06:12 2024 2618s 20%......... (T -2.309 seconds) ETA: Fri Mar 15 09:06:11 2024 2618s 30%......... (T -1.823 seconds) ETA: Fri Mar 15 09:06:11 2024 2619s 40%......... (T -1.724 seconds) ETA: Fri Mar 15 09:06:12 2024 2620s 50%......... (T -1.786 seconds) ETA: Fri Mar 15 09:06:13 2024 2621s 60%......... (T -1.562 seconds) ETA: Fri Mar 15 09:06:13 2024 2621s 70%......... (T -1.055 seconds) ETA: Fri Mar 15 09:06:13 2024 2622s 80%......... (T -0.502 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 91%........ 2623s Acceptable hash function found after 1000 cycles. 2623s Best uses 2/2 bases and has 0 empties from 2 inputs. 2623s Score: 0.96875 (cf. worst: -4.51562) 2623s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2623s Total correlation penalty: 0 2623s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2623s 10 2623s == 2623s w[ 0]>>29: -.C 2623s w[ 0]>>30: A.- 2623s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 2623s Ecolist (optimistic): Expcted entries per list: 12 2623s Ecolist (optimistic): Minimum chunks per list: 3 2623s Would take minimum 256.000000 bytes to make perfect hash. 2623s Hashing 37.42 KB of sequence requires: 2623s ~ linear (in seq length) hashing cost of 79.50 KB 2623s ~ linear (in seq length) expected anchor cost of 914.25 KB 2623s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2623s Expected memory usage (without anchors): 79.75 KB 2623s Expected memory usage (with anchors): 994.00 KB 2623s Hash parameters computed in 5.477 seconds 2623s Creating storage structures: 16 entries in 256 bytes space. 2623s Storage structures created in: 0.011 seconds 2623s 2623s Hashing NZ_GG705077.fna forwards 2623s 0%......... (T -0.052 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 10%......... (T -0.031 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 20%......... (T -0.021 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 30%......... (T -0.027 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 40%......... (T -0.019 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 50%......... (T -0.020 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 90%......... 2623s Hashing NZ_GG705077.fna backwards 2623s 0%......... (T -0.074 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 10%......... (T -0.104 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 20%......... (T -0.080 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 30%......... (T -0.053 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 40%......... (T -0.047 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 50%......... (T -0.042 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 60%......... (T -0.030 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 70%......... (T -0.018 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 80%......... (T -0.008 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 90%......... 2623s Hashing NZ_GG705077.gbk forwards 2623s 0%......... (T -0.091 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 10%......... (T -0.046 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 20%......... (T -0.074 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 30%......... (T -0.050 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 40%......... (T -0.035 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 50%......... (T -0.028 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 70%......... (T -0.016 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 80%......... (T -0.008 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 90%......... 2623s Hashing NZ_GG705077.gbk backwards 2623s 0%......... (T -0.053 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 10%......... (T -0.034 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 20%......... (T -0.042 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 30%......... (T -0.030 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 40%......... (T -0.036 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 50%......... (T -0.030 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:06:14 2024 2623s 90%......... 2623s Initial hashing took: 0.338 seconds 2623s Extracting anchors from hash-space. 2623s (T -2.253 seconds) ETA: Fri Mar 15 09:06:16 2024 2623s 6%. (T -1.250 seconds) ETA: Fri Mar 15 09:06:15 2024 2623s 18%. (T -0.973 seconds) ETA: Fri Mar 15 09:06:15 2024 2624s 31%. (T -0.805 seconds) ETA: Fri Mar 15 09:06:15 2024 2624s 43%. (T -0.662 seconds) ETA: Fri Mar 15 09:06:15 2024 2624s 56%. (T -0.470 seconds) ETA: Fri Mar 15 09:06:15 2024 2624s 68%. (T -0.311 seconds) ETA: Fri Mar 15 09:06:16 2024 2625s 81%. (T -0.126 seconds) ETA: Fri Mar 15 09:06:16 2024 2625s 93%. 2625s Anchor extraction completed in: 1.751 seconds 2625s Total anchors: 0 2625s Anchor extraction + merge time: 1.751 seconds 2625s Total processing time: 7.822 seconds 2625s Writing anchors... 2625s Total seeds used in anchors: 16 2625s Hash performance: 2625s Keys used: 16 out of 16 possible (100.00%). 2625s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2625s Average pigeons per pigeon hole: 1 2625s Writing 16 repeats...Output writing finished in: 0.224 seconds 2625s Total time: 8.045 seconds 2625s Murasaki finished! 2625s PASSED MURASAKI 2625s 2625s Testing Genepare on NZ_GG705077.fna 2625s 1001 2625s PASSED GENEPARSE 2625s 2627s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2627s Testing mbfa on NZ_GG705077.fna 2627s PASSED mbfa 2627s 2627s Test Murasaki on NZ_GG705078.fna 2628s Verbosity level is: 0 2628s Writing to: output/test 2628s Pattern is: 101 2628s Max usable hash bits: 27 2628s Hit filter is: 0 2628s Hash table type is: EcoHash 2628s Hashing every: 1 base 2628s Histogram detail is: 0 2628s Hashing function is: 3 2628s Collision profiling is: disabled 2628s Repeats are: unmasked 2628s Mergefilter is at: 100 2628s Random seed: 1710493578 (automatic) 2628s Bitscore output: on 2628s Leave status records: no 2628s Join neighbors is: off 2628s Target memory is: 1.28 GB 2628s Retain members is: true 2628s Store repeatmap? yes 2628s Reverse complement data is generated on the fly 2628s Rifts allowed: 0 2628s Fuzzy Extension: yes 2628s Score by minimum pair: yes 2628s Gapped anchors: no 2628s Large sequence support is: enabled => seqpos is 8 bytes 2628s Murasaki version 1.68.6 (LARGESEQ) 2628s Loading NZ_GG705078.fna 2628s Read 9549bp (9.33 KBp) in 0.040 seconds (235.9 KBp/s) 2628s Done with forward strand (9578bp). Preparing reverse complement... 2628s <-> Reversing metdata. 2628s Done. 2628s Seq NZ_GG705078.fna loaded. 9.35 KB 2628s Loading NZ_GG705078.gbk 2628s Read 9549bp (9.33 KBp) in 0.064 seconds (144.9 KBp/s) 2628s Done with forward strand (9578bp). Preparing reverse complement... 2628s <-> Reversing metdata. 2628s Done. 2628s Seq NZ_GG705078.gbk loaded. 9.35 KB 2628s Sequence loading took: 0.172 seconds 2628s Forward frequencies: A:29.6366% C:18.8816% G:17.583% T:33.8988% 2628s Global base frequencies: A/T:63.5354% C/G:36.4646% 2628s Pat: 3 bases long with weight 2 2628s 1 101 2628s Computing hash parameters... 2628s Using 4 hashbits 2628s 0%......... (T -6.373 seconds) ETA: Fri Mar 15 09:06:26 2024 2629s 10%......... (T -6.179 seconds) ETA: Fri Mar 15 09:06:26 2024 2630s 20%......... (T -4.500 seconds) ETA: Fri Mar 15 09:06:25 2024 2630s 30%......... (T -3.751 seconds) ETA: Fri Mar 15 09:06:25 2024 2631s 40%......... (T -3.220 seconds) ETA: Fri Mar 15 09:06:25 2024 2632s 50%......... (T -2.971 seconds) ETA: Fri Mar 15 09:06:26 2024 2633s 60%......... (T -2.178 seconds) ETA: Fri Mar 15 09:06:26 2024 2634s 70%......... (T -1.501 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 80%......... (T -0.681 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 91%........ 2635s Acceptable hash function found after 1000 cycles. 2635s Best uses 2/2 bases and has 0 empties from 2 inputs. 2635s Score: 0.96875 (cf. worst: -4.51562) 2635s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2635s Total correlation penalty: 0 2635s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2635s 10 2635s == 2635s w[ 0]>>29: -.C 2635s w[ 0]>>30: A.- 2635s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 2635s Ecolist (optimistic): Expcted entries per list: 12 2635s Ecolist (optimistic): Minimum chunks per list: 3 2635s Would take minimum 256.000000 bytes to make perfect hash. 2635s Hashing 37.30 KB of sequence requires: 2635s ~ linear (in seq length) hashing cost of 79.26 KB 2635s ~ linear (in seq length) expected anchor cost of 897.94 KB 2635s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2635s Expected memory usage (without anchors): 79.51 KB 2635s Expected memory usage (with anchors): 977.44 KB 2635s Hash parameters computed in 7.714 seconds 2635s Creating storage structures: 16 entries in 256 bytes space. 2635s Storage structures created in: 0.004 seconds 2635s 2635s Hashing NZ_GG705078.fna forwards 2635s 0%......... (T -0.011 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 10%......... (T -0.010 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 20%......... (T -0.012 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 30%......... (T -0.048 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 40%......... (T -0.033 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 50%......... (T -0.023 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 70%......... (T -0.013 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 90%......... 2635s Hashing NZ_GG705078.fna backwards 2635s 0%......... (T -0.011 seconds) ETA: Fri Mar 15 09:06:26 2024 2635s 10%......... (T -0.011 seconds) ETA: Fri Mar 15 09:06:26 2024 2636s 20%......... (T -0.048 seconds) ETA: Fri Mar 15 09:06:26 2024 2636s 30%......... (T -0.033 seconds) ETA: Fri Mar 15 09:06:26 2024 2636s 40%......... (T -0.024 seconds) ETA: Fri Mar 15 09:06:26 2024 2636s 50%......... (T -0.017 seconds) ETA: Fri Mar 15 09:06:26 2024 2636s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:06:26 2024 2636s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:06:26 2024 2636s 80%......... (T -0.008 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 90%......... 2636s Hashing NZ_GG705078.gbk forwards 2636s 0%......... (T -0.013 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 10%......... (T -0.013 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 20%......... (T -0.011 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 30%......... (T -0.012 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 40%......... (T -0.028 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 50%......... (T -0.020 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 60%......... (T -0.013 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 90%......... 2636s Hashing NZ_GG705078.gbk backwards 2636s 0%......... (T -0.014 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 10%......... (T -0.016 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 20%......... (T -0.020 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 30%......... (T -0.056 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 40%......... (T -0.055 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 50%......... (T -0.038 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 60%......... (T -0.046 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 70%......... (T -0.027 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 80%......... (T -0.012 seconds) ETA: Fri Mar 15 09:06:27 2024 2636s 90%......... 2636s Initial hashing took: 0.313 seconds 2636s Extracting anchors from hash-space. 2636s (T -2.271 seconds) ETA: Fri Mar 15 09:06:29 2024 2636s 6%. (T -1.320 seconds) ETA: Fri Mar 15 09:06:28 2024 2636s 18%. (T -1.090 seconds) ETA: Fri Mar 15 09:06:28 2024 2636s 31%. (T -0.946 seconds) ETA: Fri Mar 15 09:06:28 2024 2637s 43%. (T -0.852 seconds) ETA: Fri Mar 15 09:06:29 2024 2637s 56%. (T -0.620 seconds) ETA: Fri Mar 15 09:06:29 2024 2637s 68%. (T -0.382 seconds) ETA: Fri Mar 15 09:06:29 2024 2637s 81%. (T -0.130 seconds) ETA: Fri Mar 15 09:06:29 2024 2638s 93%. 2638s Anchor extraction completed in: 1.873 seconds 2638s Total anchors: 0 2638s Anchor extraction + merge time: 1.874 seconds 2638s Total processing time: 10.082 seconds 2638s Writing anchors... 2638s Total seeds used in anchors: 16 2638s Hash performance: 2638s Keys used: 16 out of 16 possible (100.00%). 2638s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2638s Average pigeons per pigeon hole: 1 2638s Writing 16 repeats...Output writing finished in: 0.655 seconds 2638s Total time: 10.738 seconds 2638s Murasaki finished! 2638s PASSED MURASAKI 2638s 2638s Testing Genepare on NZ_GG705078.fna 2638s 1001 2639s PASSED GENEPARSE 2639s 2641s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2641s Testing mbfa on NZ_GG705078.fna 2642s PASSED mbfa 2642s 2642s Test Murasaki on NZ_GG705079.fna 2642s Verbosity level is: 0 2642s Writing to: output/test 2642s Pattern is: 101 2642s Max usable hash bits: 27 2642s Hit filter is: 0 2642s Hash table type is: EcoHash 2642s Hashing every: 1 base 2642s Histogram detail is: 0 2642s Hashing function is: 3 2642s Collision profiling is: disabled 2642s Repeats are: unmasked 2642s Mergefilter is at: 100 2642s Random seed: 1710493593 (automatic) 2642s Bitscore output: on 2642s Leave status records: no 2642s Join neighbors is: off 2642s Target memory is: 1.28 GB 2642s Retain members is: true 2642s Store repeatmap? yes 2642s Reverse complement data is generated on the fly 2642s Rifts allowed: 0 2642s Fuzzy Extension: yes 2642s Score by minimum pair: yes 2642s Gapped anchors: no 2642s Large sequence support is: enabled => seqpos is 8 bytes 2642s Murasaki version 1.68.6 (LARGESEQ) 2642s Loading NZ_GG705079.fna 2642s Read 7815bp (7.63 KBp) in 0.063 seconds (120.9 KBp/s) 2642s Done with forward strand (9392bp). Preparing reverse complement... 2642s <-> Reversing metdata. 2642s Done. 2642s Seq NZ_GG705079.fna loaded. 9.17 KB 2642s Loading NZ_GG705079.gbk 2642s Read 7815bp (7.63 KBp) in 0.099 seconds (77.3 KBp/s) 2642s Done with forward strand (9392bp). Preparing reverse complement... 2642s <-> Reversing metdata. 2642s Done. 2642s Seq NZ_GG705079.gbk loaded. 9.17 KB 2642s Sequence loading took: 0.250 seconds 2642s Forward frequencies: A:32.1433% C:19.1555% G:17.3512% T:31.35% 2642s Global base frequencies: A/T:63.4933% C/G:36.5067% 2642s Pat: 3 bases long with weight 2 2642s 1 101 2642s Computing hash parameters... 2642s Using 4 hashbits 2642s 0%......... (T -3.161 seconds) ETA: Fri Mar 15 09:06:36 2024 2643s 10%......... (T -3.319 seconds) ETA: Fri Mar 15 09:06:37 2024 2643s 20%......... (T -2.447 seconds) ETA: Fri Mar 15 09:06:36 2024 2643s 30%......... (T -1.992 seconds) ETA: Fri Mar 15 09:06:36 2024 2644s 40%......... (T -2.161 seconds) ETA: Fri Mar 15 09:06:37 2024 2645s 50%......... (T -1.829 seconds) ETA: Fri Mar 15 09:06:38 2024 2645s 60%......... (T -1.362 seconds) ETA: Fri Mar 15 09:06:37 2024 2646s 70%......... (T -0.922 seconds) ETA: Fri Mar 15 09:06:38 2024 2647s 80%......... (T -0.535 seconds) ETA: Fri Mar 15 09:06:39 2024 2648s 91%........ 2648s Acceptable hash function found after 1000 cycles. 2648s Best uses 2/2 bases and has 0 empties from 2 inputs. 2648s Score: 0.96875 (cf. worst: -4.51562) 2648s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2648s Total correlation penalty: 0 2648s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2648s 10 2648s == 2648s w[ 0]>>29: -.C 2648s w[ 0]>>30: A.- 2648s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 2648s Ecolist (optimistic): Expcted entries per list: 11 2648s Ecolist (optimistic): Minimum chunks per list: 3 2648s Would take minimum 256.000000 bytes to make perfect hash. 2648s Hashing 30.53 KB of sequence requires: 2648s ~ linear (in seq length) hashing cost of 64.86 KB 2648s ~ linear (in seq length) expected anchor cost of 880.50 KB 2648s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2648s Expected memory usage (without anchors): 65.11 KB 2648s Expected memory usage (with anchors): 945.61 KB 2648s Hash parameters computed in 6.478 seconds 2648s Creating storage structures: 16 entries in 256 bytes space. 2648s Storage structures created in: 0.043 seconds 2648s 2648s Hashing NZ_GG705079.fna forwards 2649s 0%......... (T -0.193 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 10%......... (T -0.091 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 20%......... (T -0.076 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 30%......... (T -0.062 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 40%......... (T -0.046 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 50%......... (T -0.031 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 60%......... (T -0.023 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 70%......... (T -0.015 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 90%......... 2649s Hashing NZ_GG705079.fna backwards 2649s 0%......... (T -0.037 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 10%......... (T -0.019 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 20%......... (T -0.012 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 30%......... (T -0.016 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 40%......... (T -0.016 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 60%......... (T -0.009 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 90%......... 2649s Hashing NZ_GG705079.gbk forwards 2649s 0%......... (T -0.054 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 10%......... (T -0.067 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 20%......... (T -0.057 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 30%......... (T -0.043 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 40%......... (T -0.036 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 50%......... (T -0.025 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 60%......... (T -0.021 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 70%......... (T -0.013 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 90%......... 2649s Hashing NZ_GG705079.gbk backwards 2649s 0%......... (T -0.787 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 10%......... (T -0.353 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 20%......... (T -0.207 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 30%......... (T -0.136 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 40%......... (T -0.099 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 50%......... (T -0.101 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 60%......... (T -0.071 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 70%......... (T -0.042 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 80%......... (T -0.021 seconds) ETA: Fri Mar 15 09:06:40 2024 2649s 90%......... 2649s Initial hashing took: 0.427 seconds 2649s Extracting anchors from hash-space. 2649s (T -2.719 seconds) ETA: Fri Mar 15 09:06:43 2024 2649s 6%. (T -2.198 seconds) ETA: Fri Mar 15 09:06:43 2024 2650s 18%. (T -1.726 seconds) ETA: Fri Mar 15 09:06:42 2024 2650s 31%. (T -1.243 seconds) ETA: Fri Mar 15 09:06:42 2024 2650s 43%. (T -0.771 seconds) ETA: Fri Mar 15 09:06:42 2024 2650s 56%. (T -0.511 seconds) ETA: Fri Mar 15 09:06:41 2024 2650s 68%. (T -0.356 seconds) ETA: Fri Mar 15 09:06:42 2024 2651s 81%. (T -0.131 seconds) ETA: Fri Mar 15 09:06:42 2024 2651s 93%. 2651s Anchor extraction completed in: 1.878 seconds 2651s Total anchors: 0 2651s Anchor extraction + merge time: 1.880 seconds 2651s Total processing time: 9.142 seconds 2651s Writing anchors... 2651s Total seeds used in anchors: 16 2651s Hash performance: 2651s Keys used: 16 out of 16 possible (100.00%). 2651s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2651s Average pigeons per pigeon hole: 1 2651s Writing 16 repeats...Output writing finished in: 0.340 seconds 2651s Total time: 9.481 seconds 2651s Murasaki finished! 2651s PASSED MURASAKI 2651s 2651s Testing Genepare on NZ_GG705079.fna 2651s 1001 2651s PASSED GENEPARSE 2651s 2654s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2655s Testing mbfa on NZ_GG705079.fna 2655s PASSED mbfa 2655s 2655s Test Murasaki on NZ_GG705080.fna 2655s Verbosity level is: 0 2655s Writing to: output/test 2655s Pattern is: 101 2655s Max usable hash bits: 27 2655s Hit filter is: 0 2655s Hash table type is: EcoHash 2655s Hashing every: 1 base 2655s Histogram detail is: 0 2655s Hashing function is: 3 2655s Collision profiling is: disabled 2655s Repeats are: unmasked 2655s Mergefilter is at: 100 2655s Random seed: 1710493606 (automatic) 2655s Bitscore output: on 2655s Leave status records: no 2655s Join neighbors is: off 2655s Target memory is: 1.28 GB 2655s Retain members is: true 2655s Store repeatmap? yes 2655s Reverse complement data is generated on the fly 2655s Rifts allowed: 0 2655s Fuzzy Extension: yes 2655s Score by minimum pair: yes 2655s Gapped anchors: no 2655s Large sequence support is: enabled => seqpos is 8 bytes 2655s Murasaki version 1.68.6 (LARGESEQ) 2655s Loading NZ_GG705080.fna 2655s Read 6711bp (6.55 KBp) in 0.029 seconds (229.5 KBp/s) 2655s Done with forward strand (6711bp). Preparing reverse complement... 2655s <-> Reversing metdata. 2655s Done. 2655s Seq NZ_GG705080.fna loaded. 6.55 KB 2655s Loading NZ_GG705080.gbk 2655s Read 6711bp (6.55 KBp) in 0.074 seconds (89.1 KBp/s) 2655s Done with forward strand (6711bp). Preparing reverse complement... 2655s <-> Reversing metdata. 2655s Done. 2655s Seq NZ_GG705080.gbk loaded. 6.55 KB 2655s Sequence loading took: 0.131 seconds 2655s Forward frequencies: A:28.3415% C:19.4308% G:19.5202% T:32.7075% 2655s Global base frequencies: A/T:61.049% C/G:38.951% 2655s Pat: 3 bases long with weight 2 2655s 1 101 2656s Computing hash parameters... 2656s Using 4 hashbits 2656s 0%......... (T -7.267 seconds) ETA: Fri Mar 15 09:06:55 2024 2657s 10%......... (T -4.419 seconds) ETA: Fri Mar 15 09:06:52 2024 2658s 20%......... (T -4.470 seconds) ETA: Fri Mar 15 09:06:53 2024 2659s 30%......... (T -4.840 seconds) ETA: Fri Mar 15 09:06:55 2024 2659s 40%......... (T -3.879 seconds) ETA: Fri Mar 15 09:06:54 2024 2660s 50%......... (T -3.257 seconds) ETA: Fri Mar 15 09:06:55 2024 2661s 60%......... (T -2.388 seconds) ETA: Fri Mar 15 09:06:54 2024 2662s 70%......... (T -1.630 seconds) ETA: Fri Mar 15 09:06:55 2024 2663s 80%......... (T -0.705 seconds) ETA: Fri Mar 15 09:06:54 2024 2663s 91%........ 2663s Acceptable hash function found after 1000 cycles. 2663s Best uses 2/2 bases and has 0 empties from 2 inputs. 2663s Score: 0.96875 (cf. worst: -4.51562) 2663s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2663s Total correlation penalty: 0 2663s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2663s 10 2663s == 2663s w[ 0]>>29: -.C 2663s w[ 0]>>30: A.- 2663s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 2663s Ecolist (optimistic): Expcted entries per list: 11 2663s Ecolist (optimistic): Minimum chunks per list: 4 2663s Would take minimum 256.000000 bytes to make perfect hash. 2663s Hashing 26.21 KB of sequence requires: 2663s ~ linear (in seq length) hashing cost of 52.42 KB 2663s ~ linear (in seq length) expected anchor cost of 629.16 KB 2663s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2663s Expected memory usage (without anchors): 52.67 KB 2663s Expected memory usage (with anchors): 681.83 KB 2663s Hash parameters computed in 7.956 seconds 2663s Creating storage structures: 16 entries in 256 bytes space. 2663s Storage structures created in: 0.002 seconds 2663s 2663s Hashing NZ_GG705080.fna forwards 2663s 0%......... (T -0.165 seconds) ETA: Fri Mar 15 09:06:55 2024 2663s 10%......... (T -0.277 seconds) ETA: Fri Mar 15 09:06:55 2024 2663s 20%......... (T -0.164 seconds) ETA: Fri Mar 15 09:06:55 2024 2663s 30%......... (T -0.107 seconds) ETA: Fri Mar 15 09:06:54 2024 2664s 40%......... (T -0.145 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 50%......... (T -0.097 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 60%......... (T -0.083 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 70%......... (T -0.052 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 80%......... (T -0.023 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 90%......... 2664s Hashing NZ_GG705080.fna backwards 2664s 0%......... (T -0.332 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 10%......... (T -0.152 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 20%......... (T -0.091 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 30%......... (T -0.061 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 40%......... (T -0.041 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 50%......... (T -0.045 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 60%......... (T -0.029 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 70%......... (T -0.017 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 80%......... (T -0.008 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 90%......... 2664s Hashing NZ_GG705080.gbk forwards 2664s 0%......... (T -0.137 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 10%......... (T -0.065 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 20%......... (T -0.165 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 30%......... (T -0.125 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 40%......... (T -0.085 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 50%......... (T -0.084 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 60%......... (T -0.055 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 70%......... (T -0.032 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 80%......... (T -0.019 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 90%......... 2664s Hashing NZ_GG705080.gbk backwards 2664s 0%......... (T -0.215 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 10%......... (T -0.100 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 20%......... (T -0.139 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 30%......... (T -0.173 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 40%......... (T -0.181 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 50%......... (T -0.121 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 60%......... (T -0.079 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 70%......... (T -0.046 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 80%......... (T -0.024 seconds) ETA: Fri Mar 15 09:06:55 2024 2664s 90%......... 2664s Initial hashing took: 0.752 seconds 2664s Extracting anchors from hash-space. 2664s (T -0.804 seconds) ETA: Fri Mar 15 09:06:56 2024 2664s 6%. (T -0.687 seconds) ETA: Fri Mar 15 09:06:56 2024 2664s 18%. (T -0.581 seconds) ETA: Fri Mar 15 09:06:56 2024 2664s 31%. (T -0.442 seconds) ETA: Fri Mar 15 09:06:56 2024 2665s 43%. (T -0.338 seconds) ETA: Fri Mar 15 09:06:56 2024 2665s 56%. (T -0.230 seconds) ETA: Fri Mar 15 09:06:56 2024 2665s 68%. (T -0.144 seconds) ETA: Fri Mar 15 09:06:56 2024 2665s 81%. (T -0.050 seconds) ETA: Fri Mar 15 09:06:56 2024 2665s 93%. 2665s Anchor extraction completed in: 0.769 seconds 2665s Total anchors: 0 2665s Anchor extraction + merge time: 0.769 seconds 2665s Total processing time: 9.658 seconds 2665s Writing anchors... 2665s Total seeds used in anchors: 16 2665s Hash performance: 2665s Keys used: 16 out of 16 possible (100.00%). 2665s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2665s Average pigeons per pigeon hole: 1 2665s Writing 16 repeats...Output writing finished in: 0.333 seconds 2665s Total time: 9.991 seconds 2665s Murasaki finished! 2665s PASSED MURASAKI 2665s 2665s Testing Genepare on NZ_GG705080.fna 2665s 1001 2665s PASSED GENEPARSE 2665s 2667s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2667s Testing mbfa on NZ_GG705080.fna 2667s PASSED mbfa 2667s 2667s Test Murasaki on NZ_GG705081.fna 2667s Verbosity level is: 0 2667s Writing to: output/test 2667s Pattern is: 101 2667s Max usable hash bits: 27 2667s Hit filter is: 0 2667s Hash table type is: EcoHash 2667s Hashing every: 1 base 2667s Histogram detail is: 0 2667s Hashing function is: 3 2667s Collision profiling is: disabled 2667s Repeats are: unmasked 2667s Mergefilter is at: 100 2667s Random seed: 1710493618 (automatic) 2667s Bitscore output: on 2667s Leave status records: no 2667s Join neighbors is: off 2667s Target memory is: 1.28 GB 2667s Retain members is: true 2667s Store repeatmap? yes 2667s Reverse complement data is generated on the fly 2667s Rifts allowed: 0 2667s Fuzzy Extension: yes 2667s Score by minimum pair: yes 2667s Gapped anchors: no 2667s Large sequence support is: enabled => seqpos is 8 bytes 2667s Murasaki version 1.68.6 (LARGESEQ) 2667s Loading NZ_GG705081.fna 2667s Read 6691bp (6.53 KBp) in 0.016 seconds (396.8 KBp/s) 2667s Done with forward strand (6691bp). Preparing reverse complement... 2667s <-> Reversing metdata. 2667s Done. 2667s Seq NZ_GG705081.fna loaded. 6.53 KB 2667s Loading NZ_GG705081.gbk 2667s Read 6691bp (6.53 KBp) in 0.031 seconds (208.5 KBp/s) 2667s Done with forward strand (6691bp). Preparing reverse complement... 2667s <-> Reversing metdata. 2667s Done. 2667s Seq NZ_GG705081.gbk loaded. 6.53 KB 2667s Sequence loading took: 0.064 seconds 2667s Forward frequencies: A:31.1314% C:16.8286% G:17.6057% T:34.4343% 2667s Global base frequencies: A/T:65.5657% C/G:34.4343% 2667s Pat: 3 bases long with weight 2 2667s 1 101 2667s Computing hash parameters... 2667s Using 4 hashbits 2668s 0%......... (T -4.155 seconds) ETA: Fri Mar 15 09:07:03 2024 2668s 10%......... (T -3.364 seconds) ETA: Fri Mar 15 09:07:02 2024 2668s 20%......... (T -2.798 seconds) ETA: Fri Mar 15 09:07:02 2024 2669s 30%......... (T -2.428 seconds) ETA: Fri Mar 15 09:07:02 2024 2669s 40%......... (T -2.190 seconds) ETA: Fri Mar 15 09:07:02 2024 2670s 50%......... (T -1.678 seconds) ETA: Fri Mar 15 09:07:02 2024 2670s 60%......... (T -1.167 seconds) ETA: Fri Mar 15 09:07:02 2024 2670s 70%......... (T -0.745 seconds) ETA: Fri Mar 15 09:07:02 2024 2670s 80%......... (T -0.329 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 91%........ 2671s Acceptable hash function found after 1000 cycles. 2671s Best uses 2/2 bases and has 0 empties from 2 inputs. 2671s Score: 0.96875 (cf. worst: -4.51562) 2671s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2671s Total correlation penalty: 0 2671s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2671s 10 2671s == 2671s w[ 0]>>29: -.C 2671s w[ 0]>>30: A.- 2671s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 2671s Ecolist (optimistic): Expcted entries per list: 11 2671s Ecolist (optimistic): Minimum chunks per list: 4 2671s Would take minimum 256.000000 bytes to make perfect hash. 2671s Hashing 26.14 KB of sequence requires: 2671s ~ linear (in seq length) hashing cost of 52.27 KB 2671s ~ linear (in seq length) expected anchor cost of 627.28 KB 2671s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2671s Expected memory usage (without anchors): 52.52 KB 2671s Expected memory usage (with anchors): 679.80 KB 2671s Hash parameters computed in 3.624 seconds 2671s Creating storage structures: 16 entries in 256 bytes space. 2671s Storage structures created in: 0.037 seconds 2671s 2671s Hashing NZ_GG705081.fna forwards 2671s 0%......... (T -0.067 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 10%......... (T -0.034 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 20%......... (T -0.022 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 30%......... (T -0.034 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 40%......... (T -0.023 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 50%......... (T -0.016 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 90%......... 2671s Hashing NZ_GG705081.fna backwards 2671s 0%......... (T -0.112 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 10%......... (T -0.054 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 20%......... (T -0.034 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 30%......... (T -0.063 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 40%......... (T -0.043 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 50%......... (T -0.033 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 70%......... (T -0.013 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 90%......... 2671s Hashing NZ_GG705081.gbk forwards 2671s 0%......... (T -0.091 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 10%......... (T -0.045 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 20%......... (T -0.028 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 30%......... (T -0.022 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 40%......... (T -0.020 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 50%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 90%......... 2671s Hashing NZ_GG705081.gbk backwards 2671s 0%......... (T -0.062 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 10%......... (T -0.043 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 20%......... (T -0.034 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 30%......... (T -0.046 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 40%......... (T -0.035 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 50%......... (T -0.025 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 60%......... (T -0.018 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 90%......... 2671s Initial hashing took: 0.212 seconds 2671s Extracting anchors from hash-space. 2671s (T -0.549 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 6%. (T -0.326 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 18%. (T -0.272 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 31%. (T -0.187 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 43%. (T -0.136 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 56%. (T -0.089 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 68%. (T -0.056 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 81%. (T -0.021 seconds) ETA: Fri Mar 15 09:07:02 2024 2671s 93%. 2671s Anchor extraction completed in: 0.398 seconds 2671s Total anchors: 0 2671s Anchor extraction + merge time: 0.399 seconds 2671s Total processing time: 4.343 seconds 2671s Writing anchors... 2671s Total seeds used in anchors: 16 2671s Hash performance: 2671s Keys used: 16 out of 16 possible (100.00%). 2671s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2671s Average pigeons per pigeon hole: 1 2671s Writing 16 repeats...Output writing finished in: 0.132 seconds 2671s Total time: 4.475 seconds 2671s Murasaki finished! 2671s PASSED MURASAKI 2671s 2671s Testing Genepare on NZ_GG705081.fna 2672s 1001 2672s PASSED GENEPARSE 2672s 2672s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2672s Testing mbfa on NZ_GG705081.fna 2673s PASSED mbfa 2673s 2673s Test Murasaki on NZ_GG705082.fna 2673s Verbosity level is: 0 2673s Writing to: output/test 2673s Pattern is: 101 2673s Max usable hash bits: 27 2673s Hit filter is: 0 2673s Hash table type is: EcoHash 2673s Hashing every: 1 base 2673s Histogram detail is: 0 2673s Hashing function is: 3 2673s Collision profiling is: disabled 2673s Repeats are: unmasked 2673s Mergefilter is at: 100 2673s Random seed: 1710493624 (automatic) 2673s Bitscore output: on 2673s Leave status records: no 2673s Join neighbors is: off 2673s Target memory is: 1.28 GB 2673s Retain members is: true 2673s Store repeatmap? yes 2673s Reverse complement data is generated on the fly 2673s Rifts allowed: 0 2673s Fuzzy Extension: yes 2673s Score by minimum pair: yes 2673s Gapped anchors: no 2673s Large sequence support is: enabled => seqpos is 8 bytes 2673s Murasaki version 1.68.6 (LARGESEQ) 2673s Loading NZ_GG705082.fna 2673s Read 6008bp (5.87 KBp) in 0.012 seconds (489.2 KBp/s) 2673s Done with forward strand (6008bp). Preparing reverse complement... 2673s <-> Reversing metdata. 2673s Done. 2673s Seq NZ_GG705082.fna loaded. 5.87 KB 2673s Loading NZ_GG705082.gbk 2673s Read 6008bp (5.87 KBp) in 0.013 seconds (467.6 KBp/s) 2673s Done with forward strand (6008bp). Preparing reverse complement... 2673s <-> Reversing metdata. 2673s Done. 2673s Seq NZ_GG705082.gbk loaded. 5.87 KB 2673s Sequence loading took: 0.033 seconds 2673s Forward frequencies: A:33.0892% C:18.1591% G:17.6265% T:31.1252% 2673s Global base frequencies: A/T:64.2144% C/G:35.7856% 2673s Pat: 3 bases long with weight 2 2673s 1 101 2673s Computing hash parameters... 2673s Using 4 hashbits 2674s 0%......... (T -7.919 seconds) ETA: Fri Mar 15 09:07:12 2024 2674s 10%......... (T -4.938 seconds) ETA: Fri Mar 15 09:07:10 2024 2674s 20%......... (T -3.440 seconds) ETA: Fri Mar 15 09:07:09 2024 2674s 30%......... (T -2.549 seconds) ETA: Fri Mar 15 09:07:08 2024 2675s 40%......... (T -2.139 seconds) ETA: Fri Mar 15 09:07:08 2024 2675s 50%......... (T -1.779 seconds) ETA: Fri Mar 15 09:07:08 2024 2676s 60%......... (T -1.286 seconds) ETA: Fri Mar 15 09:07:08 2024 2676s 70%......... (T -0.809 seconds) ETA: Fri Mar 15 09:07:08 2024 2676s 80%......... (T -0.362 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 91%........ 2677s Acceptable hash function found after 1000 cycles. 2677s Best uses 2/2 bases and has 0 empties from 2 inputs. 2677s Score: 0.96875 (cf. worst: -4.51562) 2677s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2677s Total correlation penalty: 0 2677s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2677s 10 2677s == 2677s w[ 0]>>29: -.C 2677s w[ 0]>>30: A.- 2677s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 2677s Ecolist (optimistic): Expcted entries per list: 11 2677s Ecolist (optimistic): Minimum chunks per list: 4 2677s Would take minimum 256.000000 bytes to make perfect hash. 2677s Hashing 23.47 KB of sequence requires: 2677s ~ linear (in seq length) hashing cost of 46.94 KB 2677s ~ linear (in seq length) expected anchor cost of 563.25 KB 2677s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2677s Expected memory usage (without anchors): 47.19 KB 2677s Expected memory usage (with anchors): 610.44 KB 2677s Hash parameters computed in 3.965 seconds 2677s Creating storage structures: 16 entries in 256 bytes space. 2677s Storage structures created in: 0.010 seconds 2677s 2677s Hashing NZ_GG705082.fna forwards 2677s 0%......... (T -0.041 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 10%......... (T -0.059 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 20%......... (T -0.139 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 30%......... (T -0.091 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 40%......... (T -0.062 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 50%......... (T -0.042 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 60%......... (T -0.044 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 70%......... (T -0.026 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 80%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 90%......... 2677s Hashing NZ_GG705082.fna backwards 2677s 0%......... (T -0.107 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 10%......... (T -0.051 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 20%......... (T -0.035 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 30%......... (T -0.031 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 40%......... (T -0.023 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 50%......... (T -0.022 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 90%......... 2677s Hashing NZ_GG705082.gbk forwards 2677s 0%......... (T -0.087 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 10%......... (T -0.043 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 20%......... (T -0.027 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 30%......... (T -0.032 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 40%......... (T -0.029 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 50%......... (T -0.020 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 90%......... 2677s Hashing NZ_GG705082.gbk backwards 2677s 0%......... (T -0.047 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 10%......... (T -0.041 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 20%......... (T -0.026 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 30%......... (T -0.020 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 40%......... (T -0.023 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 50%......... (T -0.016 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 60%......... (T -0.016 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 70%......... (T -0.010 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 90%......... 2677s Initial hashing took: 0.279 seconds 2677s Extracting anchors from hash-space. 2677s (T -1.167 seconds) ETA: Fri Mar 15 09:07:09 2024 2677s 6%. (T -0.705 seconds) ETA: Fri Mar 15 09:07:09 2024 2677s 18%. (T -0.552 seconds) ETA: Fri Mar 15 09:07:09 2024 2677s 31%. (T -0.388 seconds) ETA: Fri Mar 15 09:07:09 2024 2677s 43%. (T -0.291 seconds) ETA: Fri Mar 15 09:07:09 2024 2677s 56%. (T -0.193 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 68%. (T -0.110 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 81%. (T -0.038 seconds) ETA: Fri Mar 15 09:07:08 2024 2677s 93%. 2677s Anchor extraction completed in: 0.531 seconds 2677s Total anchors: 0 2677s Anchor extraction + merge time: 0.538 seconds 2677s Total processing time: 4.839 seconds 2677s Writing anchors... 2677s Total seeds used in anchors: 16 2677s Hash performance: 2677s Keys used: 16 out of 16 possible (100.00%). 2677s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2677s Average pigeons per pigeon hole: 1 2678s Writing 16 repeats...Output writing finished in: 0.206 seconds 2678s Total time: 5.046 seconds 2678s Murasaki finished! 2678s PASSED MURASAKI 2678s 2678s Testing Genepare on NZ_GG705082.fna 2678s 1001 2678s PASSED GENEPARSE 2678s 2680s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2680s Testing mbfa on NZ_GG705082.fna 2680s PASSED mbfa 2680s 2680s Test Murasaki on NZ_GG705083.fna 2680s Verbosity level is: 0 2680s Writing to: output/test 2680s Pattern is: 101 2680s Max usable hash bits: 27 2680s Hit filter is: 0 2680s Hash table type is: EcoHash 2680s Hashing every: 1 base 2680s Histogram detail is: 0 2680s Hashing function is: 3 2680s Collision profiling is: disabled 2680s Repeats are: unmasked 2680s Mergefilter is at: 100 2680s Random seed: 1710493631 (automatic) 2680s Bitscore output: on 2680s Leave status records: no 2680s Join neighbors is: off 2680s Target memory is: 1.28 GB 2680s Retain members is: true 2680s Store repeatmap? yes 2680s Reverse complement data is generated on the fly 2680s Rifts allowed: 0 2680s Fuzzy Extension: yes 2680s Score by minimum pair: yes 2680s Gapped anchors: no 2680s Large sequence support is: enabled => seqpos is 8 bytes 2680s Murasaki version 1.68.6 (LARGESEQ) 2680s Loading NZ_GG705083.fna 2680s Read 5476bp (5.35 KBp) in 0.013 seconds (408.9 KBp/s) 2680s Done with forward strand (5476bp). Preparing reverse complement... 2680s <-> Reversing metdata. 2680s Done. 2680s Seq NZ_GG705083.fna loaded. 5.35 KB 2680s Loading NZ_GG705083.gbk 2680s Read 5476bp (5.35 KBp) in 0.100 seconds (53.3 KBp/s) 2680s Done with forward strand (5476bp). Preparing reverse complement... 2680s <-> Reversing metdata. 2680s Done. 2680s Seq NZ_GG705083.gbk loaded. 5.35 KB 2680s Sequence loading took: 0.127 seconds 2680s Forward frequencies: A:28.7071% C:18.6815% G:17.7137% T:34.8977% 2680s Global base frequencies: A/T:63.6048% C/G:36.3952% 2680s Pat: 3 bases long with weight 2 2680s 1 101 2680s Computing hash parameters... 2680s Using 4 hashbits 2681s 0%......... (T -4.161 seconds) ETA: Fri Mar 15 09:07:16 2024 2681s 10%......... (T -3.673 seconds) ETA: Fri Mar 15 09:07:16 2024 2682s 20%......... (T -2.848 seconds) ETA: Fri Mar 15 09:07:15 2024 2682s 30%......... (T -2.458 seconds) ETA: Fri Mar 15 09:07:15 2024 2682s 40%......... (T -2.013 seconds) ETA: Fri Mar 15 09:07:15 2024 2683s 50%......... (T -1.671 seconds) ETA: Fri Mar 15 09:07:16 2024 2683s 60%......... (T -1.290 seconds) ETA: Fri Mar 15 09:07:16 2024 2684s 70%......... (T -0.829 seconds) ETA: Fri Mar 15 09:07:16 2024 2684s 80%......... (T -0.365 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 91%........ 2684s Acceptable hash function found after 1000 cycles. 2684s Best uses 2/2 bases and has 0 empties from 2 inputs. 2684s Score: 0.96875 (cf. worst: -4.51562) 2684s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2684s Total correlation penalty: 0 2684s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2684s 10 2684s == 2684s w[ 0]>>29: -.C 2684s w[ 0]>>30: A.- 2684s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 2684s Ecolist (optimistic): Expcted entries per list: 11 2684s Ecolist (optimistic): Minimum chunks per list: 4 2684s Would take minimum 256.000000 bytes to make perfect hash. 2684s Hashing 21.39 KB of sequence requires: 2684s ~ linear (in seq length) hashing cost of 42.78 KB 2684s ~ linear (in seq length) expected anchor cost of 513.38 KB 2684s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2684s Expected memory usage (without anchors): 43.03 KB 2684s Expected memory usage (with anchors): 556.41 KB 2684s Hash parameters computed in 3.928 seconds 2684s Creating storage structures: 16 entries in 256 bytes space. 2684s Storage structures created in: 0.008 seconds 2684s 2684s Hashing NZ_GG705083.fna forwards 2684s 0%......... (T -0.049 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 10%......... (T -0.025 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 20%......... (T -0.017 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 30%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 40%......... (T -0.030 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 50%......... (T -0.020 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 60%......... (T -0.013 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 90%......... 2684s Hashing NZ_GG705083.fna backwards 2684s 0%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 10%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 20%......... (T -0.051 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 30%......... (T -0.034 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 40%......... (T -0.023 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 50%......... (T -0.017 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:15 2024 2684s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:15 2024 2685s 80%......... (T -0.009 seconds) ETA: Fri Mar 15 09:07:15 2024 2685s 90%......... 2685s Hashing NZ_GG705083.gbk forwards 2685s 0%......... (T -0.146 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 10%......... (T -0.069 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 20%......... (T -0.086 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 30%......... (T -0.057 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 40%......... (T -0.039 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 50%......... (T -0.037 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 60%......... (T -0.024 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 90%......... 2685s Hashing NZ_GG705083.gbk backwards 2685s 0%......... (T -0.275 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 10%......... (T -0.126 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 20%......... (T -0.131 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 30%......... (T -0.131 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 40%......... (T -0.088 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 50%......... (T -0.060 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 60%......... (T -0.039 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 70%......... (T -0.023 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 80%......... (T -0.010 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 90%......... 2685s Initial hashing took: 0.333 seconds 2685s Extracting anchors from hash-space. 2685s (T -0.843 seconds) ETA: Fri Mar 15 09:07:17 2024 2685s 6%. (T -0.873 seconds) ETA: Fri Mar 15 09:07:17 2024 2685s 18%. (T -0.771 seconds) ETA: Fri Mar 15 09:07:17 2024 2685s 31%. (T -0.528 seconds) ETA: Fri Mar 15 09:07:17 2024 2685s 43%. (T -0.335 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 56%. (T -0.224 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 68%. (T -0.117 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 81%. (T -0.040 seconds) ETA: Fri Mar 15 09:07:16 2024 2685s 93%. 2685s Anchor extraction completed in: 0.539 seconds 2685s Total anchors: 0 2685s Anchor extraction + merge time: 0.539 seconds 2685s Total processing time: 4.968 seconds 2685s Writing anchors... 2685s Total seeds used in anchors: 16 2685s Hash performance: 2685s Keys used: 16 out of 16 possible (100.00%). 2685s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2685s Average pigeons per pigeon hole: 1 2685s Writing 16 repeats...Output writing finished in: 0.086 seconds 2685s Total time: 5.054 seconds 2685s Murasaki finished! 2685s PASSED MURASAKI 2685s 2685s Testing Genepare on NZ_GG705083.fna 2685s 1001 2685s PASSED GENEPARSE 2685s 2686s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2686s Testing mbfa on NZ_GG705083.fna 2687s PASSED mbfa 2687s 2687s Test Murasaki on NZ_GG705084.fna 2687s Verbosity level is: 0 2687s Writing to: output/test 2687s Pattern is: 101 2687s Max usable hash bits: 27 2687s Hit filter is: 0 2687s Hash table type is: EcoHash 2687s Hashing every: 1 base 2687s Histogram detail is: 0 2687s Hashing function is: 3 2687s Collision profiling is: disabled 2687s Repeats are: unmasked 2687s Mergefilter is at: 100 2687s Random seed: 1710493638 (automatic) 2687s Bitscore output: on 2687s Leave status records: no 2687s Join neighbors is: off 2687s Target memory is: 1.28 GB 2687s Retain members is: true 2687s Store repeatmap? yes 2687s Reverse complement data is generated on the fly 2687s Rifts allowed: 0 2687s Fuzzy Extension: yes 2687s Score by minimum pair: yes 2687s Gapped anchors: no 2687s Large sequence support is: enabled => seqpos is 8 bytes 2687s Murasaki version 1.68.6 (LARGESEQ) 2687s Loading NZ_GG705084.fna 2687s Read 5223bp (5.10 KBp) in 0.028 seconds (179.1 KBp/s) 2687s Done with forward strand (5223bp). Preparing reverse complement... 2687s <-> Reversing metdata. 2687s Done. 2687s Seq NZ_GG705084.fna loaded. 5.10 KB 2687s Loading NZ_GG705084.gbk 2687s Read 5223bp (5.10 KBp) in 0.030 seconds (170.8 KBp/s) 2687s Done with forward strand (5223bp). Preparing reverse complement... 2687s <-> Reversing metdata. 2687s Done. 2687s Seq NZ_GG705084.gbk loaded. 5.10 KB 2687s Sequence loading took: 0.082 seconds 2687s Forward frequencies: A:27.8384% C:19.7588% G:16.906% T:35.4968% 2687s Global base frequencies: A/T:63.3352% C/G:36.6648% 2687s Pat: 3 bases long with weight 2 2687s 1 101 2687s Computing hash parameters... 2687s Using 4 hashbits 2687s 0%......... (T -2.834 seconds) ETA: Fri Mar 15 09:07:21 2024 2687s 10%......... (T -2.827 seconds) ETA: Fri Mar 15 09:07:21 2024 2688s 20%......... (T -2.396 seconds) ETA: Fri Mar 15 09:07:21 2024 2688s 30%......... (T -1.879 seconds) ETA: Fri Mar 15 09:07:21 2024 2688s 40%......... (T -1.704 seconds) ETA: Fri Mar 15 09:07:21 2024 2689s 50%......... (T -1.793 seconds) ETA: Fri Mar 15 09:07:22 2024 2690s 60%......... (T -1.271 seconds) ETA: Fri Mar 15 09:07:22 2024 2690s 70%......... (T -0.835 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 80%......... (T -0.376 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 91%........ 2691s Acceptable hash function found after 1000 cycles. 2691s Best uses 2/2 bases and has 0 empties from 2 inputs. 2691s Score: 0.96875 (cf. worst: -4.51562) 2691s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2691s Total correlation penalty: 0 2691s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2691s 10 2691s == 2691s w[ 0]>>29: -.C 2691s w[ 0]>>30: A.- 2691s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 2691s Ecolist (optimistic): Expcted entries per list: 11 2691s Ecolist (optimistic): Minimum chunks per list: 4 2691s Would take minimum 256.000000 bytes to make perfect hash. 2691s Hashing 20.40 KB of sequence requires: 2691s ~ linear (in seq length) hashing cost of 40.80 KB 2691s ~ linear (in seq length) expected anchor cost of 489.66 KB 2691s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2691s Expected memory usage (without anchors): 41.05 KB 2691s Expected memory usage (with anchors): 530.70 KB 2691s Hash parameters computed in 4.326 seconds 2691s Creating storage structures: 16 entries in 256 bytes space. 2691s Storage structures created in: 0.021 seconds 2691s 2691s Hashing NZ_GG705084.fna forwards 2691s 0%......... (T -0.010 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 10%......... (T -0.008 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 20%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 30%......... (T -0.005 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 40%......... (T -0.036 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 50%......... (T -0.028 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 60%......... (T -0.018 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 90%......... 2691s Hashing NZ_GG705084.fna backwards 2691s 0%......... (T -0.044 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 10%......... (T -0.041 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 20%......... (T -0.028 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 30%......... (T -0.019 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 40%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 50%......... (T -0.017 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 60%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 90%......... 2691s Hashing NZ_GG705084.gbk forwards 2691s 0%......... (T -0.073 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 10%......... (T -0.036 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 20%......... (T -0.023 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 30%......... (T -0.029 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 40%......... (T -0.020 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 50%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 60%......... (T -0.009 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 90%......... 2691s Hashing NZ_GG705084.gbk backwards 2691s 0%......... (T -0.074 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 10%......... (T -0.036 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 20%......... (T -0.047 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 30%......... (T -0.032 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 40%......... (T -0.027 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 50%......... (T -0.019 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 60%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:07:22 2024 2691s 90%......... 2691s Initial hashing took: 0.206 seconds 2691s Extracting anchors from hash-space. 2691s (T -2.077 seconds) ETA: Fri Mar 15 09:07:24 2024 2692s 6%. (T -2.374 seconds) ETA: Fri Mar 15 09:07:25 2024 2692s 18%. (T -1.319 seconds) ETA: Fri Mar 15 09:07:24 2024 2692s 31%. (T -0.811 seconds) ETA: Fri Mar 15 09:07:24 2024 2692s 43%. (T -0.576 seconds) ETA: Fri Mar 15 09:07:24 2024 2692s 56%. (T -0.376 seconds) ETA: Fri Mar 15 09:07:23 2024 2692s 68%. (T -0.202 seconds) ETA: Fri Mar 15 09:07:23 2024 2692s 81%. (T -0.067 seconds) ETA: Fri Mar 15 09:07:23 2024 2692s 93%. 2692s Anchor extraction completed in: 0.921 seconds 2692s Total anchors: 0 2692s Anchor extraction + merge time: 0.922 seconds 2692s Total processing time: 5.564 seconds 2692s Writing anchors... 2692s Total seeds used in anchors: 16 2692s Hash performance: 2692s Keys used: 16 out of 16 possible (100.00%). 2692s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2692s Average pigeons per pigeon hole: 1 2692s Writing 16 repeats...Output writing finished in: 0.146 seconds 2692s Total time: 5.711 seconds 2692s Murasaki finished! 2692s PASSED MURASAKI 2692s 2692s Testing Genepare on NZ_GG705084.fna 2693s 1001 2693s PASSED GENEPARSE 2693s 2694s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2694s Testing mbfa on NZ_GG705084.fna 2694s PASSED mbfa 2694s 2694s Test Murasaki on NZ_GG705085.fna 2694s Verbosity level is: 0 2694s Writing to: output/test 2694s Pattern is: 101 2694s Max usable hash bits: 27 2694s Hit filter is: 0 2694s Hash table type is: EcoHash 2694s Hashing every: 1 base 2694s Histogram detail is: 0 2694s Hashing function is: 3 2694s Collision profiling is: disabled 2694s Repeats are: unmasked 2694s Mergefilter is at: 100 2694s Random seed: 1710493645 (automatic) 2694s Bitscore output: on 2694s Leave status records: no 2694s Join neighbors is: off 2694s Target memory is: 1.28 GB 2694s Retain members is: true 2694s Store repeatmap? yes 2694s Reverse complement data is generated on the fly 2694s Rifts allowed: 0 2694s Fuzzy Extension: yes 2694s Score by minimum pair: yes 2694s Gapped anchors: no 2694s Large sequence support is: enabled => seqpos is 8 bytes 2694s Murasaki version 1.68.6 (LARGESEQ) 2694s Loading NZ_GG705085.fna 2694s Read 4549bp (4.44 KBp) in 0.017 seconds (268.7 KBp/s) 2694s Done with forward strand (5055bp). Preparing reverse complement... 2694s <-> Reversing metdata. 2694s Done. 2694s Seq NZ_GG705085.fna loaded. 4.94 KB 2694s Loading NZ_GG705085.gbk 2694s Read 4549bp (4.44 KBp) in 0.022 seconds (205.3 KBp/s) 2694s Done with forward strand (5055bp). Preparing reverse complement... 2694s <-> Reversing metdata. 2694s Done. 2694s Seq NZ_GG705085.gbk loaded. 4.94 KB 2694s Sequence loading took: 0.071 seconds 2694s Forward frequencies: A:26.6212% C:21.1255% G:30.0286% T:22.2247% 2694s Global base frequencies: A/T:48.8459% C/G:51.1541% 2694s Pat: 3 bases long with weight 2 2694s 1 101 2695s Computing hash parameters... 2695s Using 4 hashbits 2695s 0%......... (T -4.854 seconds) ETA: Fri Mar 15 09:07:31 2024 2696s 10%......... (T -4.134 seconds) ETA: Fri Mar 15 09:07:31 2024 2696s 20%......... (T -3.304 seconds) ETA: Fri Mar 15 09:07:30 2024 2696s 30%......... (T -2.482 seconds) ETA: Fri Mar 15 09:07:30 2024 2696s 40%......... (T -1.890 seconds) ETA: Fri Mar 15 09:07:29 2024 2697s 50%......... (T -1.454 seconds) ETA: Fri Mar 15 09:07:29 2024 2697s 60%......... (T -1.097 seconds) ETA: Fri Mar 15 09:07:29 2024 2697s 70%......... (T -0.735 seconds) ETA: Fri Mar 15 09:07:29 2024 2698s 80%......... (T -0.373 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 91%........ 2699s Acceptable hash function found after 1000 cycles. 2699s Best uses 2/2 bases and has 0 empties from 2 inputs. 2699s Score: 0.96875 (cf. worst: -4.51562) 2699s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2699s Total correlation penalty: 0 2699s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2699s 10 2699s == 2699s w[ 0]>>29: -.C 2699s w[ 0]>>30: A.- 2699s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 2699s Ecolist (optimistic): Expcted entries per list: 11 2699s Ecolist (optimistic): Minimum chunks per list: 4 2699s Would take minimum 256.000000 bytes to make perfect hash. 2699s Hashing 17.77 KB of sequence requires: 2699s ~ linear (in seq length) hashing cost of 35.53 KB 2699s ~ linear (in seq length) expected anchor cost of 473.91 KB 2699s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2699s Expected memory usage (without anchors): 35.78 KB 2699s Expected memory usage (with anchors): 509.69 KB 2699s Hash parameters computed in 4.378 seconds 2699s Creating storage structures: 16 entries in 256 bytes space. 2699s Storage structures created in: 0.021 seconds 2699s 2699s Hashing NZ_GG705085.fna forwards 2699s 0%......... (T -0.009 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 10%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 20%......... (T -0.006 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 40%......... (T -0.015 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 50%......... (T -0.018 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 60%......... (T -0.026 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 70%......... (T -0.015 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 90%......... 2699s Hashing NZ_GG705085.fna backwards 2699s 0%......... (T -0.186 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 10%......... (T -0.161 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 20%......... (T -0.096 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 30%......... (T -0.063 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 40%......... (T -0.043 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 50%......... (T -0.029 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 60%......... (T -0.033 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 70%......... (T -0.020 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 80%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 90%......... 2699s Hashing NZ_GG705085.gbk forwards 2699s 0%......... (T -0.243 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 10%......... (T -0.112 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 20%......... (T -0.067 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 30%......... (T -0.085 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 40%......... (T -0.058 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 50%......... (T -0.039 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 60%......... (T -0.026 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 70%......... (T -0.015 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 80%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 90%......... 2699s Hashing NZ_GG705085.gbk backwards 2699s 0%......... (T -0.192 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 10%......... (T -0.111 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 20%......... (T -0.067 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 30%......... (T -0.044 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 40%......... (T -0.032 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 50%......... (T -0.040 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 60%......... (T -0.026 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 70%......... (T -0.015 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 90%......... 2699s Initial hashing took: 0.467 seconds 2699s Extracting anchors from hash-space. 2699s (T -0.136 seconds) ETA: Fri Mar 15 09:07:30 2024 2699s 6%. (T -0.155 seconds) ETA: Fri Mar 15 09:07:31 2024 2699s 18%. (T -0.137 seconds) ETA: Fri Mar 15 09:07:31 2024 2699s 31%. (T -0.151 seconds) ETA: Fri Mar 15 09:07:31 2024 2700s 43%. (T -0.152 seconds) ETA: Fri Mar 15 09:07:31 2024 2700s 56%. (T -0.104 seconds) ETA: Fri Mar 15 09:07:31 2024 2700s 68%. (T -0.058 seconds) ETA: Fri Mar 15 09:07:31 2024 2700s 81%. (T -0.021 seconds) ETA: Fri Mar 15 09:07:31 2024 2700s 93%. 2700s Anchor extraction completed in: 0.288 seconds 2700s Total anchors: 0 2700s Anchor extraction + merge time: 0.288 seconds 2700s Total processing time: 5.277 seconds 2700s Writing anchors... 2700s Total seeds used in anchors: 16 2700s Hash performance: 2700s Keys used: 16 out of 16 possible (100.00%). 2700s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2700s Average pigeons per pigeon hole: 1 2700s Writing 16 repeats...Output writing finished in: 0.142 seconds 2700s Total time: 5.420 seconds 2700s Murasaki finished! 2700s PASSED MURASAKI 2700s 2700s Testing Genepare on NZ_GG705085.fna 2700s 1001 2700s PASSED GENEPARSE 2700s 2701s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2701s Testing mbfa on NZ_GG705085.fna 2701s PASSED mbfa 2701s 2701s Test Murasaki on NZ_GG705086.fna 2701s Verbosity level is: 0 2701s Writing to: output/test 2701s Pattern is: 101 2701s Max usable hash bits: 27 2701s Hit filter is: 0 2701s Hash table type is: EcoHash 2701s Hashing every: 1 base 2701s Histogram detail is: 0 2701s Hashing function is: 3 2701s Collision profiling is: disabled 2701s Repeats are: unmasked 2701s Mergefilter is at: 100 2701s Random seed: 1710493652 (automatic) 2701s Bitscore output: on 2701s Leave status records: no 2701s Join neighbors is: off 2701s Target memory is: 1.28 GB 2701s Retain members is: true 2701s Store repeatmap? yes 2701s Reverse complement data is generated on the fly 2701s Rifts allowed: 0 2701s Fuzzy Extension: yes 2701s Score by minimum pair: yes 2701s Gapped anchors: no 2701s Large sequence support is: enabled => seqpos is 8 bytes 2701s Murasaki version 1.68.6 (LARGESEQ) 2701s Loading NZ_GG705086.fna 2701s Read 4868bp (4.75 KBp) in 0.027 seconds (176.1 KBp/s) 2701s Done with forward strand (4868bp). Preparing reverse complement... 2701s <-> Reversing metdata. 2701s Done. 2701s Seq NZ_GG705086.fna loaded. 4.75 KB 2701s Loading NZ_GG705086.gbk 2701s Read 4868bp (4.75 KBp) in 0.011 seconds (428.9 KBp/s) 2701s Done with forward strand (4868bp). Preparing reverse complement... 2701s <-> Reversing metdata. 2701s Done. 2701s Seq NZ_GG705086.gbk loaded. 4.75 KB 2701s Sequence loading took: 0.053 seconds 2701s Forward frequencies: A:26.9104% C:22.5349% G:22.4938% T:28.0608% 2701s Global base frequencies: A/T:54.9712% C/G:45.0288% 2701s Pat: 3 bases long with weight 2 2701s 1 101 2702s Computing hash parameters... 2702s Using 4 hashbits 2702s 0%......... (T -6.785 seconds) ETA: Fri Mar 15 09:07:40 2024 2703s 10%......... (T -6.228 seconds) ETA: Fri Mar 15 09:07:40 2024 2704s 20%......... (T -5.780 seconds) ETA: Fri Mar 15 09:07:41 2024 2705s 30%......... (T -4.450 seconds) ETA: Fri Mar 15 09:07:40 2024 2705s 40%......... (T -3.472 seconds) ETA: Fri Mar 15 09:07:39 2024 2706s 50%......... (T -2.790 seconds) ETA: Fri Mar 15 09:07:39 2024 2706s 60%......... (T -1.942 seconds) ETA: Fri Mar 15 09:07:39 2024 2706s 70%......... (T -1.203 seconds) ETA: Fri Mar 15 09:07:39 2024 2707s 80%......... (T -0.554 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 91%........ 2708s Acceptable hash function found after 1000 cycles. 2708s Best uses 2/2 bases and has 0 empties from 2 inputs. 2708s Score: 0.96875 (cf. worst: -4.51562) 2708s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2708s Total correlation penalty: 0 2708s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2708s 10 2708s == 2708s w[ 0]>>29: -.C 2708s w[ 0]>>30: A.- 2708s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 2708s Ecolist (optimistic): Expcted entries per list: 11 2708s Ecolist (optimistic): Minimum chunks per list: 4 2708s Would take minimum 256.000000 bytes to make perfect hash. 2708s Hashing 19.02 KB of sequence requires: 2708s ~ linear (in seq length) hashing cost of 38.03 KB 2708s ~ linear (in seq length) expected anchor cost of 456.38 KB 2708s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2708s Expected memory usage (without anchors): 38.28 KB 2708s Expected memory usage (with anchors): 494.66 KB 2708s Hash parameters computed in 6.389 seconds 2708s Creating storage structures: 16 entries in 256 bytes space. 2708s Storage structures created in: 0.039 seconds 2708s 2708s Hashing NZ_GG705086.fna forwards 2708s 0%......... (T -0.393 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 10%......... (T -0.209 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 20%......... (T -0.124 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 30%......... (T -0.081 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 40%......... (T -0.054 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 50%......... (T -0.042 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 60%......... (T -0.028 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 70%......... (T -0.016 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 90%......... 2708s Hashing NZ_GG705086.fna backwards 2708s 0%......... (T -0.134 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 10%......... (T -0.063 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 20%......... (T -0.039 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 30%......... (T -0.026 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 40%......... (T -0.043 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 50%......... (T -0.029 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 60%......... (T -0.019 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 90%......... 2708s Hashing NZ_GG705086.gbk forwards 2708s 0%......... (T -0.099 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 10%......... (T -0.050 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 20%......... (T -0.103 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 30%......... (T -0.107 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 40%......... (T -0.089 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 50%......... (T -0.080 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 60%......... (T -0.070 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 70%......... (T -0.041 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 80%......... (T -0.018 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 90%......... 2708s Hashing NZ_GG705086.gbk backwards 2708s 0%......... (T -0.115 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 10%......... (T -0.113 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 20%......... (T -0.141 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 30%......... (T -0.092 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 40%......... (T -0.063 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 50%......... (T -0.043 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 60%......... (T -0.028 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 70%......... (T -0.022 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 80%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:39 2024 2708s 90%......... 2708s Initial hashing took: 0.513 seconds 2708s Extracting anchors from hash-space. 2708s (T -1.052 seconds) ETA: Fri Mar 15 09:07:40 2024 2709s 6%. (T -0.407 seconds) ETA: Fri Mar 15 09:07:40 2024 2709s 18%. (T -0.244 seconds) ETA: Fri Mar 15 09:07:40 2024 2709s 31%. (T -0.188 seconds) ETA: Fri Mar 15 09:07:40 2024 2709s 43%. (T -0.135 seconds) ETA: Fri Mar 15 09:07:40 2024 2709s 56%. (T -0.097 seconds) ETA: Fri Mar 15 09:07:40 2024 2709s 68%. (T -0.054 seconds) ETA: Fri Mar 15 09:07:40 2024 2709s 81%. (T -0.019 seconds) ETA: Fri Mar 15 09:07:40 2024 2709s 93%. 2709s Anchor extraction completed in: 0.272 seconds 2709s Total anchors: 0 2709s Anchor extraction + merge time: 0.272 seconds 2709s Total processing time: 7.273 seconds 2709s Writing anchors... 2709s Total seeds used in anchors: 16 2709s Hash performance: 2709s Keys used: 16 out of 16 possible (100.00%). 2709s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2709s Average pigeons per pigeon hole: 1 2709s Writing 16 repeats...Output writing finished in: 0.076 seconds 2709s Total time: 7.349 seconds 2709s Murasaki finished! 2709s PASSED MURASAKI 2709s 2709s Testing Genepare on NZ_GG705086.fna 2709s 1001 2709s PASSED GENEPARSE 2709s 2711s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2711s Testing mbfa on NZ_GG705086.fna 2711s PASSED mbfa 2711s 2711s Test Murasaki on NZ_GG705087.fna 2711s Verbosity level is: 0 2711s Writing to: output/test 2711s Pattern is: 101 2711s Max usable hash bits: 27 2711s Hit filter is: 0 2711s Hash table type is: EcoHash 2711s Hashing every: 1 base 2711s Histogram detail is: 0 2711s Hashing function is: 3 2711s Collision profiling is: disabled 2711s Repeats are: unmasked 2711s Mergefilter is at: 100 2711s Random seed: 1710493662 (automatic) 2711s Bitscore output: on 2711s Leave status records: no 2711s Join neighbors is: off 2711s Target memory is: 1.28 GB 2711s Retain members is: true 2711s Store repeatmap? yes 2711s Reverse complement data is generated on the fly 2711s Rifts allowed: 0 2711s Fuzzy Extension: yes 2711s Score by minimum pair: yes 2711s Gapped anchors: no 2711s Large sequence support is: enabled => seqpos is 8 bytes 2711s Murasaki version 1.68.6 (LARGESEQ) 2711s Loading NZ_GG705087.fna 2711s Read 4863bp (4.75 KBp) in 0.010 seconds (472.7 KBp/s) 2711s Done with forward strand (4863bp). Preparing reverse complement... 2711s <-> Reversing metdata. 2711s Done. 2711s Seq NZ_GG705087.fna loaded. 4.75 KB 2711s Loading NZ_GG705087.gbk 2711s Read 4863bp (4.75 KBp) in 0.010 seconds (476.4 KBp/s) 2711s Done with forward strand (4863bp). Preparing reverse complement... 2711s <-> Reversing metdata. 2711s Done. 2711s Seq NZ_GG705087.gbk loaded. 4.75 KB 2711s Sequence loading took: 0.033 seconds 2711s Forward frequencies: A:34.0119% C:17.4378% G:19.2679% T:29.2823% 2711s Global base frequencies: A/T:63.2943% C/G:36.7057% 2711s Pat: 3 bases long with weight 2 2711s 1 101 2711s Computing hash parameters... 2711s Using 4 hashbits 2712s 0%......... (T -7.143 seconds) ETA: Fri Mar 15 09:07:50 2024 2713s 10%......... (T -6.862 seconds) ETA: Fri Mar 15 09:07:51 2024 2714s 20%......... (T -5.456 seconds) ETA: Fri Mar 15 09:07:50 2024 2714s 30%......... (T -4.325 seconds) ETA: Fri Mar 15 09:07:49 2024 2714s 40%......... (T -3.166 seconds) ETA: Fri Mar 15 09:07:48 2024 2715s 50%......... (T -2.425 seconds) ETA: Fri Mar 15 09:07:48 2024 2716s 60%......... (T -1.976 seconds) ETA: Fri Mar 15 09:07:49 2024 2716s 70%......... (T -1.281 seconds) ETA: Fri Mar 15 09:07:49 2024 2717s 80%......... (T -0.577 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 91%........ 2718s Acceptable hash function found after 1000 cycles. 2718s Best uses 2/2 bases and has 0 empties from 2 inputs. 2718s Score: 0.96875 (cf. worst: -4.51562) 2718s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2718s Total correlation penalty: 0 2718s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2718s 10 2718s == 2718s w[ 0]>>29: -.C 2718s w[ 0]>>30: A.- 2718s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 2718s Ecolist (optimistic): Expcted entries per list: 11 2718s Ecolist (optimistic): Minimum chunks per list: 4 2718s Would take minimum 256.000000 bytes to make perfect hash. 2718s Hashing 19.00 KB of sequence requires: 2718s ~ linear (in seq length) hashing cost of 37.98 KB 2718s ~ linear (in seq length) expected anchor cost of 455.91 KB 2718s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2718s Expected memory usage (without anchors): 38.23 KB 2718s Expected memory usage (with anchors): 494.14 KB 2718s Hash parameters computed in 6.571 seconds 2718s Creating storage structures: 16 entries in 256 bytes space. 2718s Storage structures created in: 0.003 seconds 2718s 2718s Hashing NZ_GG705087.fna forwards 2718s 0%......... (T -0.085 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 10%......... (T -0.172 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 20%......... (T -0.103 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 30%......... (T -0.067 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 40%......... (T -0.045 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 50%......... (T -0.070 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 60%......... (T -0.081 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 70%......... (T -0.052 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 80%......... (T -0.023 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 90%......... 2718s Hashing NZ_GG705087.fna backwards 2718s 0%......... (T -0.809 seconds) ETA: Fri Mar 15 09:07:50 2024 2718s 10%......... (T -0.363 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 20%......... (T -0.214 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 30%......... (T -0.138 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 40%......... (T -0.146 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 50%......... (T -0.098 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 60%......... (T -0.063 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 70%......... (T -0.049 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 80%......... (T -0.023 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 90%......... 2718s Hashing NZ_GG705087.gbk forwards 2718s 0%......... (T -0.216 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 10%......... (T -0.099 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 20%......... (T -0.060 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 30%......... (T -0.072 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 40%......... (T -0.049 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 50%......... (T -0.033 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 60%......... (T -0.031 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 70%......... (T -0.021 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 80%......... (T -0.009 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 90%......... 2718s Hashing NZ_GG705087.gbk backwards 2718s 0%......... (T -0.107 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 10%......... (T -0.051 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 20%......... (T -0.032 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 30%......... (T -0.037 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 40%......... (T -0.055 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 50%......... (T -0.037 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 60%......... (T -0.024 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 80%......... (T -0.009 seconds) ETA: Fri Mar 15 09:07:49 2024 2718s 90%......... 2718s Initial hashing took: 0.728 seconds 2718s Extracting anchors from hash-space. 2718s (T -0.256 seconds) ETA: Fri Mar 15 09:07:50 2024 2719s 6%. (T -0.147 seconds) ETA: Fri Mar 15 09:07:50 2024 2719s 18%. (T -0.144 seconds) ETA: Fri Mar 15 09:07:50 2024 2719s 31%. (T -0.178 seconds) ETA: Fri Mar 15 09:07:50 2024 2719s 43%. (T -0.265 seconds) ETA: Fri Mar 15 09:07:50 2024 2719s 56%. (T -0.223 seconds) ETA: Fri Mar 15 09:07:50 2024 2719s 68%. (T -0.136 seconds) ETA: Fri Mar 15 09:07:50 2024 2719s 81%. (T -0.045 seconds) ETA: Fri Mar 15 09:07:50 2024 2719s 93%. 2719s Anchor extraction completed in: 0.612 seconds 2719s Total anchors: 0 2719s Anchor extraction + merge time: 0.612 seconds 2719s Total processing time: 7.954 seconds 2719s Writing anchors... 2719s Total seeds used in anchors: 16 2719s Hash performance: 2719s Keys used: 16 out of 16 possible (100.00%). 2719s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2719s Average pigeons per pigeon hole: 1 2719s Writing 16 repeats...Output writing finished in: 0.369 seconds 2720s Total time: 8.322 seconds 2720s Murasaki finished! 2720s PASSED MURASAKI 2720s 2720s Testing Genepare on NZ_GG705087.fna 2720s 1001 2720s PASSED GENEPARSE 2720s 2722s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2722s Testing mbfa on NZ_GG705087.fna 2722s PASSED mbfa 2722s 2722s Test Murasaki on NZ_GG705088.fna 2722s Verbosity level is: 0 2722s Writing to: output/test 2722s Pattern is: 101 2722s Max usable hash bits: 27 2722s Hit filter is: 0 2722s Hash table type is: EcoHash 2722s Hashing every: 1 base 2722s Histogram detail is: 0 2722s Hashing function is: 3 2722s Collision profiling is: disabled 2722s Repeats are: unmasked 2722s Mergefilter is at: 100 2722s Random seed: 1710493673 (automatic) 2722s Bitscore output: on 2722s Leave status records: no 2722s Join neighbors is: off 2722s Target memory is: 1.28 GB 2722s Retain members is: true 2722s Store repeatmap? yes 2722s Reverse complement data is generated on the fly 2722s Rifts allowed: 0 2722s Fuzzy Extension: yes 2722s Score by minimum pair: yes 2722s Gapped anchors: no 2722s Large sequence support is: enabled => seqpos is 8 bytes 2722s Murasaki version 1.68.6 (LARGESEQ) 2722s Loading NZ_GG705088.fna 2722s Read 2146bp (2.10 KBp) in 0.009 seconds (234.1 KBp/s) 2722s Done with forward strand (2146bp). Preparing reverse complement... 2722s <-> Reversing metdata. 2722s Done. 2722s Seq NZ_GG705088.fna loaded. 2.10 KB 2722s Loading NZ_GG705088.gbk 2722s Read 2146bp (2.10 KBp) in 0.008 seconds (249.8 KBp/s) 2722s Done with forward strand (2146bp). Preparing reverse complement... 2722s <-> Reversing metdata. 2722s Done. 2722s Seq NZ_GG705088.gbk loaded. 2.10 KB 2722s Sequence loading took: 0.030 seconds 2722s Forward frequencies: A:27.4464% C:18.1733% G:20.876% T:33.5042% 2722s Global base frequencies: A/T:60.9506% C/G:39.0494% 2722s Pat: 3 bases long with weight 2 2722s 1 101 2722s Computing hash parameters... 2722s Using 4 hashbits 2723s 0%......... (T -3.575 seconds) ETA: Fri Mar 15 09:07:57 2024 2723s 10%......... (T -3.748 seconds) ETA: Fri Mar 15 09:07:58 2024 2724s 20%......... (T -3.477 seconds) ETA: Fri Mar 15 09:07:58 2024 2724s 30%......... (T -3.110 seconds) ETA: Fri Mar 15 09:07:58 2024 2725s 40%......... (T -2.371 seconds) ETA: Fri Mar 15 09:07:58 2024 2725s 50%......... (T -1.869 seconds) ETA: Fri Mar 15 09:07:58 2024 2726s 60%......... (T -1.428 seconds) ETA: Fri Mar 15 09:07:58 2024 2726s 70%......... (T -0.968 seconds) ETA: Fri Mar 15 09:07:58 2024 2727s 80%......... (T -0.490 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 91%........ 2728s Acceptable hash function found after 1000 cycles. 2728s Best uses 2/2 bases and has 0 empties from 2 inputs. 2728s Score: 0.96875 (cf. worst: -4.51562) 2728s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2728s Total correlation penalty: 0 2728s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2728s 10 2728s == 2728s w[ 0]>>29: -.C 2728s w[ 0]>>30: A.- 2728s Ecolist (optimistic): (seqbits: 2 idxbits: 13 minBlocks: 1 initblocks: 1) 2728s Ecolist (optimistic): Expcted entries per list: 10 2728s Ecolist (optimistic): Minimum chunks per list: 4 2728s Would take minimum 256.000000 bytes to make perfect hash. 2728s Hashing 8.38 KB of sequence requires: 2728s ~ linear (in seq length) hashing cost of 15.72 KB 2728s ~ linear (in seq length) expected anchor cost of 201.19 KB 2728s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2728s Expected memory usage (without anchors): 15.97 KB 2728s Expected memory usage (with anchors): 217.16 KB 2728s Hash parameters computed in 5.510 seconds 2728s Creating storage structures: 16 entries in 256 bytes space. 2728s Storage structures created in: 0.015 seconds 2728s 2728s Hashing NZ_GG705088.fna forwards 2728s 0%......... (T -0.051 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 10%......... (T -0.025 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 20%......... (T -0.029 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 30%......... (T -0.020 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 40%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 60%......... (T -0.009 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 90%......... 2728s Hashing NZ_GG705088.fna backwards 2728s 0%......... (T -0.040 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 10%......... (T -0.039 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 20%......... (T -0.024 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 30%......... (T -0.016 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 40%......... (T -0.011 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 50%......... (T -0.008 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 90%......... 2728s Hashing NZ_GG705088.gbk forwards 2728s 0%......... (T -0.006 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 10%......... (T -0.009 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 20%......... (T -0.008 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 30%......... (T -0.008 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 40%......... (T -0.006 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 90%......... 2728s Hashing NZ_GG705088.gbk backwards 2728s 0%......... (T -0.355 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 10%......... (T -0.350 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 20%......... (T -0.206 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 30%......... (T -0.133 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 40%......... (T -0.101 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 50%......... (T -0.069 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 60%......... (T -0.046 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 70%......... (T -0.031 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 80%......... (T -0.017 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 90%......... 2728s Initial hashing took: 0.296 seconds 2728s Extracting anchors from hash-space. 2728s (T -0.038 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 6%. (T -0.103 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 18%. (T -0.076 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 31%. (T -0.069 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 43%. (T -0.050 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 56%. (T -0.039 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 68%. (T -0.022 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 81%. (T -0.008 seconds) ETA: Fri Mar 15 09:07:59 2024 2728s 93%. 2728s Anchor extraction completed in: 0.121 seconds 2728s Total anchors: 0 2728s Anchor extraction + merge time: 0.121 seconds 2728s Total processing time: 5.985 seconds 2728s Writing anchors... 2728s Total seeds used in anchors: 16 2728s Hash performance: 2728s Keys used: 16 out of 16 possible (100.00%). 2728s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2728s Average pigeons per pigeon hole: 1 2728s Writing 16 repeats...Output writing finished in: 0.053 seconds 2728s Total time: 6.038 seconds 2728s Murasaki finished! 2728s PASSED MURASAKI 2728s 2728s Testing Genepare on NZ_GG705088.fna 2728s 1001 2728s PASSED GENEPARSE 2728s 2730s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2730s Testing mbfa on NZ_GG705088.fna 2730s PASSED mbfa 2730s 2730s Test Murasaki on NZ_GG705089.fna 2730s Verbosity level is: 0 2730s Writing to: output/test 2730s Pattern is: 101 2730s Max usable hash bits: 27 2730s Hit filter is: 0 2730s Hash table type is: EcoHash 2730s Hashing every: 1 base 2730s Histogram detail is: 0 2730s Hashing function is: 3 2730s Collision profiling is: disabled 2730s Repeats are: unmasked 2730s Mergefilter is at: 100 2730s Random seed: 1710493681 (automatic) 2730s Bitscore output: on 2730s Leave status records: no 2730s Join neighbors is: off 2730s Target memory is: 1.28 GB 2730s Retain members is: true 2730s Store repeatmap? yes 2730s Reverse complement data is generated on the fly 2730s Rifts allowed: 0 2730s Fuzzy Extension: yes 2730s Score by minimum pair: yes 2730s Gapped anchors: no 2730s Large sequence support is: enabled => seqpos is 8 bytes 2730s Murasaki version 1.68.6 (LARGESEQ) 2730s Loading NZ_GG705089.fna 2730s Read 1396bp (1.36 KBp) in 0.013 seconds (108.6 KBp/s) 2730s Done with forward strand (1396bp). Preparing reverse complement... 2730s <-> Reversing metdata. 2730s Done. 2730s Seq NZ_GG705089.fna loaded. 1.36 KB 2730s Loading NZ_GG705089.gbk 2730s Read 1396bp (1.36 KBp) in 0.007 seconds (186.6 KBp/s) 2730s Done with forward strand (1396bp). Preparing reverse complement... 2730s <-> Reversing metdata. 2730s Done. 2730s Seq NZ_GG705089.gbk loaded. 1.36 KB 2730s Sequence loading took: 0.031 seconds 2730s Forward frequencies: A:33.4527% C:18.0516% G:19.8424% T:28.6533% 2730s Global base frequencies: A/T:62.106% C/G:37.894% 2730s Pat: 3 bases long with weight 2 2730s 1 101 2730s Computing hash parameters... 2730s Using 4 hashbits 2731s 0%......... (T -2.569 seconds) ETA: Fri Mar 15 09:08:04 2024 2731s 10%......... (T -2.358 seconds) ETA: Fri Mar 15 09:08:04 2024 2731s 20%......... (T -2.080 seconds) ETA: Fri Mar 15 09:08:04 2024 2732s 30%......... (T -2.156 seconds) ETA: Fri Mar 15 09:08:05 2024 2732s 40%......... (T -2.216 seconds) ETA: Fri Mar 15 09:08:06 2024 2733s 50%......... (T -1.872 seconds) ETA: Fri Mar 15 09:08:06 2024 2733s 60%......... (T -1.363 seconds) ETA: Fri Mar 15 09:08:06 2024 2734s 70%......... (T -0.989 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 80%......... (T -0.453 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 91%........ 2735s Acceptable hash function found after 1000 cycles. 2735s Best uses 2/2 bases and has 0 empties from 2 inputs. 2735s Score: 0.96875 (cf. worst: -4.51562) 2735s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2735s Total correlation penalty: 0 2735s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2735s 10 2735s == 2735s w[ 0]>>29: -.C 2735s w[ 0]>>30: A.- 2735s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 2735s Ecolist (optimistic): Expcted entries per list: 9 2735s Ecolist (optimistic): Minimum chunks per list: 4 2735s Would take minimum 256.000000 bytes to make perfect hash. 2735s Hashing 5.45 KB of sequence requires: 2735s ~ linear (in seq length) hashing cost of 9.54 KB 2735s ~ linear (in seq length) expected anchor cost of 130.88 KB 2735s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2735s Expected memory usage (without anchors): 9.79 KB 2735s Expected memory usage (with anchors): 140.67 KB 2735s Hash parameters computed in 4.803 seconds 2735s Creating storage structures: 16 entries in 256 bytes space. 2735s Storage structures created in: 0.008 seconds 2735s 2735s Hashing NZ_GG705089.fna forwards 2735s 0%......... (T -0.019 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 10%......... (T -0.011 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 20%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 30%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 40%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 50%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 90%......... 2735s Hashing NZ_GG705089.fna backwards 2735s 0%......... (T -0.067 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 10%......... (T -0.032 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 20%......... (T -0.020 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 30%......... (T -0.013 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 40%......... (T -0.009 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 50%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 60%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 90%......... 2735s Hashing NZ_GG705089.gbk forwards 2735s 0%......... (T -0.142 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 10%......... (T -0.065 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 20%......... (T -0.039 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 30%......... (T -0.065 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 40%......... (T -0.044 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 50%......... (T -0.030 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 60%......... (T -0.020 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 70%......... (T -0.015 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 90%......... 2735s Hashing NZ_GG705089.gbk backwards 2735s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 20%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 40%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 50%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 60%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 70%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 90%......... 2735s Initial hashing took: 0.142 seconds 2735s Extracting anchors from hash-space. 2735s (T -0.015 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 6%. (T -0.055 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 18%. (T -0.047 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 31%. (T -0.048 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 43%. (T -0.037 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 56%. (T -0.029 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 68%. (T -0.017 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 81%. (T -0.006 seconds) ETA: Fri Mar 15 09:08:06 2024 2735s 93%. 2735s Anchor extraction completed in: 0.087 seconds 2735s Total anchors: 0 2735s Anchor extraction + merge time: 0.087 seconds 2735s Total processing time: 5.091 seconds 2735s Writing anchors... 2735s Total seeds used in anchors: 16 2735s Hash performance: 2735s Keys used: 16 out of 16 possible (100.00%). 2735s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2735s Average pigeons per pigeon hole: 1 2735s Writing 16 repeats...Output writing finished in: 0.039 seconds 2735s Total time: 5.130 seconds 2735s Murasaki finished! 2735s PASSED MURASAKI 2735s 2735s Testing Genepare on NZ_GG705089.fna 2735s 397 2735s PASSED GENEPARSE 2735s 2737s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2737s Testing mbfa on NZ_GG705089.fna 2737s PASSED mbfa 2737s 2737s Test Murasaki on NZ_GG705090.fna 2737s Verbosity level is: 0 2737s Writing to: output/test 2737s Pattern is: 101 2737s Max usable hash bits: 27 2737s Hit filter is: 0 2737s Hash table type is: EcoHash 2737s Hashing every: 1 base 2737s Histogram detail is: 0 2737s Hashing function is: 3 2737s Collision profiling is: disabled 2737s Repeats are: unmasked 2737s Mergefilter is at: 100 2737s Random seed: 1710493688 (automatic) 2737s Bitscore output: on 2737s Leave status records: no 2737s Join neighbors is: off 2737s Target memory is: 1.28 GB 2737s Retain members is: true 2737s Store repeatmap? yes 2737s Reverse complement data is generated on the fly 2737s Rifts allowed: 0 2737s Fuzzy Extension: yes 2737s Score by minimum pair: yes 2737s Gapped anchors: no 2737s Large sequence support is: enabled => seqpos is 8 bytes 2737s Murasaki version 1.68.6 (LARGESEQ) 2737s Loading NZ_GG705090.fna 2737s Read 1374bp (1.34 KBp) in 0.038 seconds (35.2 KBp/s) 2738s Done with forward strand (1374bp). Preparing reverse complement... 2738s <-> Reversing metdata. 2738s Done. 2738s Seq NZ_GG705090.fna loaded. 1.34 KB 2738s Loading NZ_GG705090.gbk 2738s Read 1374bp (1.34 KBp) in 0.030 seconds (44.6 KBp/s) 2738s Done with forward strand (1374bp). Preparing reverse complement... 2738s <-> Reversing metdata. 2738s Done. 2738s Seq NZ_GG705090.gbk loaded. 1.34 KB 2738s Sequence loading took: 0.092 seconds 2738s Forward frequencies: A:29.6215% C:22.7802% G:22.6346% T:24.9636% 2738s Global base frequencies: A/T:54.5852% C/G:45.4148% 2738s Pat: 3 bases long with weight 2 2738s 1 101 2738s Computing hash parameters... 2738s Using 4 hashbits 2738s 0%......... (T -5.033 seconds) ETA: Fri Mar 15 09:08:14 2024 2739s 10%......... (T -4.282 seconds) ETA: Fri Mar 15 09:08:14 2024 2740s 20%......... (T -4.286 seconds) ETA: Fri Mar 15 09:08:15 2024 2740s 30%......... (T -3.652 seconds) ETA: Fri Mar 15 09:08:15 2024 2741s 40%......... (T -3.085 seconds) ETA: Fri Mar 15 09:08:15 2024 2741s 50%......... (T -2.443 seconds) ETA: Fri Mar 15 09:08:15 2024 2742s 60%......... (T -1.785 seconds) ETA: Fri Mar 15 09:08:15 2024 2742s 70%......... (T -1.146 seconds) ETA: Fri Mar 15 09:08:14 2024 2742s 80%......... (T -0.476 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 91%........ 2743s Acceptable hash function found after 1000 cycles. 2743s Best uses 2/2 bases and has 0 empties from 2 inputs. 2743s Score: 0.96875 (cf. worst: -4.51562) 2743s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2743s Total correlation penalty: 0 2743s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2743s 10 2743s == 2743s w[ 0]>>29: -.C 2743s w[ 0]>>30: A.- 2743s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 2743s Ecolist (optimistic): Expcted entries per list: 9 2743s Ecolist (optimistic): Minimum chunks per list: 4 2743s Would take minimum 256.000000 bytes to make perfect hash. 2743s Hashing 5.37 KB of sequence requires: 2743s ~ linear (in seq length) hashing cost of 9.39 KB 2743s ~ linear (in seq length) expected anchor cost of 128.81 KB 2743s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2743s Expected memory usage (without anchors): 9.64 KB 2743s Expected memory usage (with anchors): 138.46 KB 2743s Hash parameters computed in 5.624 seconds 2743s Creating storage structures: 16 entries in 256 bytes space. 2743s Storage structures created in: 0.004 seconds 2743s 2743s Hashing NZ_GG705090.fna forwards 2743s 0%......... (T -0.095 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 10%......... (T -0.045 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 20%......... (T -0.027 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 30%......... (T -0.018 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 40%......... (T -0.030 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 50%......... (T -0.020 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 60%......... (T -0.013 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 90%......... 2743s Hashing NZ_GG705090.fna backwards 2743s 0%......... (T -0.013 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 10%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 20%......... (T -0.058 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 30%......... (T -0.038 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 40%......... (T -0.026 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 50%......... (T -0.024 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 60%......... (T -0.029 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 70%......... (T -0.017 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 80%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 90%......... 2743s Hashing NZ_GG705090.gbk forwards 2743s 0%......... (T -0.097 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 10%......... (T -0.045 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 20%......... (T -0.027 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 30%......... (T -0.018 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 40%......... (T -0.013 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 50%......... (T -0.034 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 70%......... (T -0.013 seconds) ETA: Fri Mar 15 09:08:14 2024 2743s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:14 2024 2744s 90%......... 2744s Hashing NZ_GG705090.gbk backwards 2744s 0%......... (T -0.222 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 10%......... (T -0.101 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 20%......... (T -0.060 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 30%......... (T -0.039 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 40%......... (T -0.116 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 50%......... (T -0.078 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 60%......... (T -0.050 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 70%......... (T -0.029 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 80%......... (T -0.013 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 90%......... 2744s Initial hashing took: 0.407 seconds 2744s Extracting anchors from hash-space. 2744s (T -0.042 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 6%. (T -0.264 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 18%. (T -0.232 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 31%. (T -0.170 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 43%. (T -0.106 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 56%. (T -0.076 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 68%. (T -0.044 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 81%. (T -0.018 seconds) ETA: Fri Mar 15 09:08:15 2024 2744s 93%. 2744s Anchor extraction completed in: 0.249 seconds 2744s Total anchors: 0 2744s Anchor extraction + merge time: 0.250 seconds 2744s Total processing time: 6.412 seconds 2744s Writing anchors... 2744s Total seeds used in anchors: 16 2744s Hash performance: 2744s Keys used: 16 out of 16 possible (100.00%). 2744s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2744s Average pigeons per pigeon hole: 1 2744s Writing 16 repeats...Output writing finished in: 0.124 seconds 2744s Total time: 6.536 seconds 2744s Murasaki finished! 2744s PASSED MURASAKI 2744s 2744s Testing Genepare on NZ_GG705090.fna 2744s 375 2744s PASSED GENEPARSE 2744s 2745s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2745s Testing mbfa on NZ_GG705090.fna 2745s PASSED mbfa 2745s 2745s Test Murasaki on NZ_GG705091.fna 2745s Verbosity level is: 0 2745s Writing to: output/test 2745s Pattern is: 101 2745s Max usable hash bits: 27 2745s Hit filter is: 0 2745s Hash table type is: EcoHash 2745s Hashing every: 1 base 2745s Histogram detail is: 0 2745s Hashing function is: 3 2745s Collision profiling is: disabled 2745s Repeats are: unmasked 2745s Mergefilter is at: 100 2745s Random seed: 1710493696 (automatic) 2745s Bitscore output: on 2745s Leave status records: no 2745s Join neighbors is: off 2745s Target memory is: 1.28 GB 2745s Retain members is: true 2745s Store repeatmap? yes 2745s Reverse complement data is generated on the fly 2745s Rifts allowed: 0 2745s Fuzzy Extension: yes 2745s Score by minimum pair: yes 2745s Gapped anchors: no 2745s Large sequence support is: enabled => seqpos is 8 bytes 2745s Murasaki version 1.68.6 (LARGESEQ) 2745s Loading NZ_GG705091.fna 2745s Read 1318bp (1.29 KBp) in 0.010 seconds (128.2 KBp/s) 2745s Done with forward strand (1318bp). Preparing reverse complement... 2745s <-> Reversing metdata. 2745s Done. 2745s Seq NZ_GG705091.fna loaded. 1.29 KB 2745s Loading NZ_GG705091.gbk 2745s Read 1318bp (1.29 KBp) in 0.008 seconds (162.8 KBp/s) 2745s Done with forward strand (1318bp). Preparing reverse complement... 2745s <-> Reversing metdata. 2745s Done. 2745s Seq NZ_GG705091.gbk loaded. 1.29 KB 2745s Sequence loading took: 0.023 seconds 2745s Forward frequencies: A:29.742% C:23.8998% G:22.1548% T:24.2033% 2745s Global base frequencies: A/T:53.9454% C/G:46.0546% 2745s Pat: 3 bases long with weight 2 2745s 1 101 2745s Computing hash parameters... 2745s Using 4 hashbits 2746s 0%......... (T -2.361 seconds) ETA: Fri Mar 15 09:08:19 2024 2746s 10%......... (T -2.791 seconds) ETA: Fri Mar 15 09:08:20 2024 2747s 20%......... (T -3.089 seconds) ETA: Fri Mar 15 09:08:21 2024 2747s 30%......... (T -2.587 seconds) ETA: Fri Mar 15 09:08:21 2024 2748s 40%......... (T -2.058 seconds) ETA: Fri Mar 15 09:08:21 2024 2748s 50%......... (T -1.723 seconds) ETA: Fri Mar 15 09:08:21 2024 2748s 60%......... (T -1.248 seconds) ETA: Fri Mar 15 09:08:21 2024 2749s 70%......... (T -0.887 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 80%......... (T -0.399 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 91%........ 2750s Acceptable hash function found after 1000 cycles. 2750s Best uses 2/2 bases and has 0 empties from 2 inputs. 2750s Score: 0.96875 (cf. worst: -4.51562) 2750s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2750s Total correlation penalty: 0 2750s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2750s 10 2750s == 2750s w[ 0]>>29: -.C 2750s w[ 0]>>30: A.- 2750s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 2750s Ecolist (optimistic): Expcted entries per list: 9 2750s Ecolist (optimistic): Minimum chunks per list: 4 2750s Would take minimum 256.000000 bytes to make perfect hash. 2750s Hashing 5.15 KB of sequence requires: 2750s ~ linear (in seq length) hashing cost of 9.01 KB 2750s ~ linear (in seq length) expected anchor cost of 123.56 KB 2750s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2750s Expected memory usage (without anchors): 9.26 KB 2750s Expected memory usage (with anchors): 132.82 KB 2750s Hash parameters computed in 4.423 seconds 2750s Creating storage structures: 16 entries in 256 bytes space. 2750s Storage structures created in: 0.002 seconds 2750s 2750s Hashing NZ_GG705091.fna forwards 2750s 0%......... (T -0.058 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 10%......... (T -0.028 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 20%......... (T -0.017 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 30%......... (T -0.012 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 40%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 50%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 60%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 70%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 90%......... 2750s Hashing NZ_GG705091.fna backwards 2750s 0%......... (T -0.060 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 10%......... (T -0.029 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 20%......... (T -0.018 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 30%......... (T -0.012 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 40%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 50%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 60%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 90%......... 2750s Hashing NZ_GG705091.gbk forwards 2750s 0%......... (T -0.029 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 10%......... (T -0.015 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 20%......... (T -0.013 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 30%......... (T -0.026 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 40%......... (T -0.018 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 90%......... 2750s Hashing NZ_GG705091.gbk backwards 2750s 0%......... (T -0.053 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 10%......... (T -0.026 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 20%......... (T -0.016 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 30%......... (T -0.018 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 40%......... (T -0.012 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 50%......... (T -0.009 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 60%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 90%......... 2750s Initial hashing took: 0.124 seconds 2750s Extracting anchors from hash-space. 2750s (T -0.117 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 6%. (T -0.097 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 18%. (T -0.068 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 31%. (T -0.062 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 43%. (T -0.044 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 56%. (T -0.031 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 68%. (T -0.018 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 81%. (T -0.007 seconds) ETA: Fri Mar 15 09:08:21 2024 2750s 93%. 2750s Anchor extraction completed in: 0.096 seconds 2750s Total anchors: 0 2750s Anchor extraction + merge time: 0.096 seconds 2750s Total processing time: 4.677 seconds 2750s Writing anchors... 2750s Total seeds used in anchors: 16 2750s Hash performance: 2750s Keys used: 16 out of 16 possible (100.00%). 2750s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2750s Average pigeons per pigeon hole: 1 2750s Writing 16 repeats...Output writing finished in: 0.043 seconds 2750s Total time: 4.720 seconds 2750s Murasaki finished! 2750s PASSED MURASAKI 2750s 2750s Testing Genepare on NZ_GG705091.fna 2750s 319 2750s PASSED GENEPARSE 2750s 2751s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2751s Testing mbfa on NZ_GG705091.fna 2751s PASSED mbfa 2751s 2751s Test Murasaki on NZ_GG705092.fna 2751s Verbosity level is: 0 2751s Writing to: output/test 2751s Pattern is: 101 2751s Max usable hash bits: 27 2751s Hit filter is: 0 2751s Hash table type is: EcoHash 2751s Hashing every: 1 base 2751s Histogram detail is: 0 2751s Hashing function is: 3 2751s Collision profiling is: disabled 2751s Repeats are: unmasked 2751s Mergefilter is at: 100 2751s Random seed: 1710493702 (automatic) 2751s Bitscore output: on 2751s Leave status records: no 2751s Join neighbors is: off 2751s Target memory is: 1.28 GB 2751s Retain members is: true 2751s Store repeatmap? yes 2751s Reverse complement data is generated on the fly 2751s Rifts allowed: 0 2751s Fuzzy Extension: yes 2751s Score by minimum pair: yes 2751s Gapped anchors: no 2751s Large sequence support is: enabled => seqpos is 8 bytes 2751s Murasaki version 1.68.6 (LARGESEQ) 2751s Loading NZ_GG705092.fna 2751s Read 1283bp (1.25 KBp) in 0.009 seconds (147.0 KBp/s) 2752s Done with forward strand (1283bp). Preparing reverse complement... 2752s <-> Reversing metdata. 2752s Done. 2752s Seq NZ_GG705092.fna loaded. 1.25 KB 2752s Loading NZ_GG705092.gbk 2752s Read 1283bp (1.25 KBp) in 0.008 seconds (147.6 KBp/s) 2752s Done with forward strand (1283bp). Preparing reverse complement... 2752s <-> Reversing metdata. 2752s Done. 2752s Seq NZ_GG705092.gbk loaded. 1.25 KB 2752s Sequence loading took: 0.028 seconds 2752s Forward frequencies: A:23.6945% C:21.0444% G:25.3313% T:29.9299% 2752s Global base frequencies: A/T:53.6243% C/G:46.3757% 2752s Pat: 3 bases long with weight 2 2752s 1 101 2752s Computing hash parameters... 2752s Using 4 hashbits 2752s 0%......... (T -3.104 seconds) ETA: Fri Mar 15 09:08:26 2024 2752s 10%......... (T -2.444 seconds) ETA: Fri Mar 15 09:08:26 2024 2753s 20%......... (T -2.423 seconds) ETA: Fri Mar 15 09:08:26 2024 2753s 30%......... (T -1.908 seconds) ETA: Fri Mar 15 09:08:26 2024 2753s 40%......... (T -1.497 seconds) ETA: Fri Mar 15 09:08:25 2024 2753s 50%......... (T -1.221 seconds) ETA: Fri Mar 15 09:08:26 2024 2754s 60%......... (T -0.938 seconds) ETA: Fri Mar 15 09:08:26 2024 2754s 70%......... (T -0.602 seconds) ETA: Fri Mar 15 09:08:26 2024 2754s 80%......... (T -0.261 seconds) ETA: Fri Mar 15 09:08:25 2024 2755s 91%........ 2755s Acceptable hash function found after 1000 cycles. 2755s Best uses 2/2 bases and has 0 empties from 2 inputs. 2755s Score: 0.96875 (cf. worst: -4.51562) 2755s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2755s Total correlation penalty: 0 2755s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2755s 10 2755s == 2755s w[ 0]>>29: -.C 2755s w[ 0]>>30: A.- 2755s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 2755s Ecolist (optimistic): Expcted entries per list: 9 2755s Ecolist (optimistic): Minimum chunks per list: 4 2755s Would take minimum 256.000000 bytes to make perfect hash. 2755s Hashing 5.01 KB of sequence requires: 2755s ~ linear (in seq length) hashing cost of 8.76 KB 2755s ~ linear (in seq length) expected anchor cost of 120.28 KB 2755s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2755s Expected memory usage (without anchors): 9.01 KB 2755s Expected memory usage (with anchors): 129.29 KB 2755s Hash parameters computed in 3.086 seconds 2755s Creating storage structures: 16 entries in 256 bytes space. 2755s Storage structures created in: 0.008 seconds 2755s 2755s Hashing NZ_GG705092.fna forwards 2755s 0%......... (T -0.049 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 10%......... (T -0.024 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 20%......... (T -0.015 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 30%......... (T -0.010 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 40%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 50%......... (T -0.009 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 60%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 90%......... 2755s Hashing NZ_GG705092.fna backwards 2755s 0%......... (T -0.046 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 10%......... (T -0.022 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 20%......... (T -0.025 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 30%......... (T -0.017 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 40%......... (T -0.012 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 50%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 90%......... 2755s Hashing NZ_GG705092.gbk forwards 2755s 0%......... (T -0.088 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 10%......... (T -0.058 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 20%......... (T -0.035 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 30%......... (T -0.023 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 90%......... 2755s Hashing NZ_GG705092.gbk backwards 2755s 0%......... (T -0.071 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 10%......... (T -0.034 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 20%......... (T -0.022 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 30%......... (T -0.021 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 40%......... (T -0.014 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 50%......... (T -0.010 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 90%......... 2755s Initial hashing took: 0.123 seconds 2755s Extracting anchors from hash-space. 2755s (T -0.085 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 6%. (T -0.070 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 18%. (T -0.057 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 31%. (T -0.049 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 43%. (T -0.036 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 56%. (T -0.027 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 68%. (T -0.016 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 81%. (T -0.006 seconds) ETA: Fri Mar 15 09:08:26 2024 2755s 93%. 2755s Anchor extraction completed in: 0.086 seconds 2755s Total anchors: 0 2755s Anchor extraction + merge time: 0.086 seconds 2755s Total processing time: 3.339 seconds 2755s Writing anchors... 2755s Total seeds used in anchors: 16 2755s Hash performance: 2755s Keys used: 16 out of 16 possible (100.00%). 2755s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2755s Average pigeons per pigeon hole: 1 2755s Writing 16 repeats...Output writing finished in: 0.039 seconds 2755s Total time: 3.378 seconds 2755s Murasaki finished! 2755s PASSED MURASAKI 2755s 2755s Testing Genepare on NZ_GG705092.fna 2755s 284 2755s PASSED GENEPARSE 2755s 2756s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2756s Testing mbfa on NZ_GG705092.fna 2756s PASSED mbfa 2756s 2756s Test Murasaki on NZ_GG705093.fna 2756s Verbosity level is: 0 2756s Writing to: output/test 2756s Pattern is: 101 2756s Max usable hash bits: 27 2756s Hit filter is: 0 2756s Hash table type is: EcoHash 2756s Hashing every: 1 base 2756s Histogram detail is: 0 2756s Hashing function is: 3 2756s Collision profiling is: disabled 2756s Repeats are: unmasked 2756s Mergefilter is at: 100 2756s Random seed: 1710493707 (automatic) 2756s Bitscore output: on 2756s Leave status records: no 2756s Join neighbors is: off 2756s Target memory is: 1.28 GB 2756s Retain members is: true 2756s Store repeatmap? yes 2756s Reverse complement data is generated on the fly 2756s Rifts allowed: 0 2756s Fuzzy Extension: yes 2756s Score by minimum pair: yes 2756s Gapped anchors: no 2756s Large sequence support is: enabled => seqpos is 8 bytes 2756s Murasaki version 1.68.6 (LARGESEQ) 2756s Loading NZ_GG705093.fna 2756s Read 1180bp (1.15 KBp) in 0.008 seconds (143.0 KBp/s) 2756s Done with forward strand (1180bp). Preparing reverse complement... 2756s <-> Reversing metdata. 2756s Done. 2756s Seq NZ_GG705093.fna loaded. 1.15 KB 2756s Loading NZ_GG705093.gbk 2756s Read 1180bp (1.15 KBp) in 0.030 seconds (38.4 KBp/s) 2756s Done with forward strand (1180bp). Preparing reverse complement... 2756s <-> Reversing metdata. 2756s Done. 2756s Seq NZ_GG705093.gbk loaded. 1.15 KB 2756s Sequence loading took: 0.047 seconds 2756s Forward frequencies: A:31.9492% C:16.1017% G:19.8305% T:32.1186% 2756s Global base frequencies: A/T:64.0678% C/G:35.9322% 2756s Pat: 3 bases long with weight 2 2756s 1 101 2756s Computing hash parameters... 2756s Using 4 hashbits 2756s 0%......... (T -2.573 seconds) ETA: Fri Mar 15 09:08:30 2024 2757s 10%......... (T -2.053 seconds) ETA: Fri Mar 15 09:08:30 2024 2757s 20%......... (T -1.763 seconds) ETA: Fri Mar 15 09:08:30 2024 2757s 30%......... (T -1.599 seconds) ETA: Fri Mar 15 09:08:30 2024 2757s 40%......... (T -1.393 seconds) ETA: Fri Mar 15 09:08:30 2024 2758s 50%......... (T -1.150 seconds) ETA: Fri Mar 15 09:08:30 2024 2758s 60%......... (T -0.901 seconds) ETA: Fri Mar 15 09:08:30 2024 2759s 70%......... (T -0.770 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 80%......... (T -0.345 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 91%........ 2760s Acceptable hash function found after 1000 cycles. 2760s Best uses 2/2 bases and has 0 empties from 2 inputs. 2760s Score: 0.96875 (cf. worst: -4.51562) 2760s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2760s Total correlation penalty: 0 2760s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2760s 10 2760s == 2760s w[ 0]>>29: -.C 2760s w[ 0]>>30: A.- 2760s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 2760s Ecolist (optimistic): Expcted entries per list: 9 2760s Ecolist (optimistic): Minimum chunks per list: 4 2760s Would take minimum 256.000000 bytes to make perfect hash. 2760s Hashing 4.61 KB of sequence requires: 2760s ~ linear (in seq length) hashing cost of 8.07 KB 2760s ~ linear (in seq length) expected anchor cost of 110.62 KB 2760s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2760s Expected memory usage (without anchors): 8.32 KB 2760s Expected memory usage (with anchors): 118.94 KB 2760s Hash parameters computed in 3.823 seconds 2760s Creating storage structures: 16 entries in 256 bytes space. 2760s Storage structures created in: 0.005 seconds 2760s 2760s Hashing NZ_GG705093.fna forwards 2760s 0%......... (T -0.311 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 10%......... (T -0.145 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 20%......... (T -0.086 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 30%......... (T -0.056 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 40%......... (T -0.037 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 50%......... (T -0.025 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 60%......... (T -0.016 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 70%......... (T -0.010 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 90%......... 2760s Hashing NZ_GG705093.fna backwards 2760s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 40%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 50%......... (T -0.054 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 60%......... (T -0.035 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 70%......... (T -0.021 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 80%......... (T -0.012 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 90%......... 2760s Hashing NZ_GG705093.gbk forwards 2760s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 40%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 90%......... 2760s Hashing NZ_GG705093.gbk backwards 2760s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 10%......... (T -0.082 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 20%......... (T -0.049 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 30%......... (T -0.032 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 40%......... (T -0.022 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 50%......... (T -0.037 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 60%......... (T -0.024 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 90%......... 2760s Initial hashing took: 0.324 seconds 2760s Extracting anchors from hash-space. 2760s (T -0.038 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 6%. (T -0.140 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 18%. (T -0.221 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 31%. (T -0.166 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 43%. (T -0.100 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 56%. (T -0.062 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 68%. (T -0.038 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 81%. (T -0.017 seconds) ETA: Fri Mar 15 09:08:31 2024 2760s 93%. 2760s Anchor extraction completed in: 0.252 seconds 2760s Total anchors: 0 2760s Anchor extraction + merge time: 0.252 seconds 2760s Total processing time: 4.468 seconds 2760s Writing anchors... 2760s Total seeds used in anchors: 16 2760s Hash performance: 2760s Keys used: 16 out of 16 possible (100.00%). 2760s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2760s Average pigeons per pigeon hole: 1 2761s Writing 16 repeats...Output writing finished in: 0.148 seconds 2761s Total time: 4.616 seconds 2761s Murasaki finished! 2761s PASSED MURASAKI 2761s 2761s Testing Genepare on NZ_GG705093.fna 2761s 181 2761s PASSED GENEPARSE 2761s 2763s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2763s Testing mbfa on NZ_GG705093.fna 2763s PASSED mbfa 2763s 2763s Test Murasaki on NZ_GG705094.fna 2763s Verbosity level is: 0 2763s Writing to: output/test 2763s Pattern is: 101 2763s Max usable hash bits: 27 2763s Hit filter is: 0 2763s Hash table type is: EcoHash 2763s Hashing every: 1 base 2763s Histogram detail is: 0 2763s Hashing function is: 3 2763s Collision profiling is: disabled 2763s Repeats are: unmasked 2763s Mergefilter is at: 100 2763s Random seed: 1710493714 (automatic) 2763s Bitscore output: on 2763s Leave status records: no 2763s Join neighbors is: off 2763s Target memory is: 1.28 GB 2763s Retain members is: true 2763s Store repeatmap? yes 2763s Reverse complement data is generated on the fly 2763s Rifts allowed: 0 2763s Fuzzy Extension: yes 2763s Score by minimum pair: yes 2763s Gapped anchors: no 2763s Large sequence support is: enabled => seqpos is 8 bytes 2763s Murasaki version 1.68.6 (LARGESEQ) 2763s Loading NZ_GG705094.fna 2763s Read 1153bp (1.13 KBp) in 0.010 seconds (113.3 KBp/s) 2763s Done with forward strand (1153bp). Preparing reverse complement... 2763s <-> Reversing metdata. 2763s Done. 2763s Seq NZ_GG705094.fna loaded. 1.13 KB 2763s Loading NZ_GG705094.gbk 2763s Read 1153bp (1.13 KBp) in 0.010 seconds (117.9 KBp/s) 2763s Done with forward strand (1153bp). Preparing reverse complement... 2763s <-> Reversing metdata. 2763s Done. 2763s Seq NZ_GG705094.gbk loaded. 1.13 KB 2763s Sequence loading took: 0.024 seconds 2763s Forward frequencies: A:27.8404% C:21.4224% G:19.7745% T:30.9627% 2763s Global base frequencies: A/T:58.8031% C/G:41.1969% 2763s Pat: 3 bases long with weight 2 2763s 1 101 2763s Computing hash parameters... 2763s Using 4 hashbits 2764s 0%......... (T -7.389 seconds) ETA: Fri Mar 15 09:08:42 2024 2765s 10%......... (T -6.280 seconds) ETA: Fri Mar 15 09:08:42 2024 2765s 20%......... (T -4.711 seconds) ETA: Fri Mar 15 09:08:41 2024 2766s 30%......... (T -4.157 seconds) ETA: Fri Mar 15 09:08:41 2024 2766s 40%......... (T -3.070 seconds) ETA: Fri Mar 15 09:08:40 2024 2766s 50%......... (T -2.196 seconds) ETA: Fri Mar 15 09:08:40 2024 2767s 60%......... (T -1.515 seconds) ETA: Fri Mar 15 09:08:39 2024 2768s 70%......... (T -1.178 seconds) ETA: Fri Mar 15 09:08:40 2024 2769s 80%......... (T -0.563 seconds) ETA: Fri Mar 15 09:08:40 2024 2769s 91%........ 2770s Acceptable hash function found after 1000 cycles. 2770s Best uses 2/2 bases and has 0 empties from 2 inputs. 2770s Score: 0.96875 (cf. worst: -4.51562) 2770s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2770s Total correlation penalty: 0 2770s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2770s 10 2770s == 2770s w[ 0]>>29: -.C 2770s w[ 0]>>30: A.- 2770s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 2770s Ecolist (optimistic): Expcted entries per list: 9 2770s Ecolist (optimistic): Minimum chunks per list: 4 2770s Would take minimum 256.000000 bytes to make perfect hash. 2770s Hashing 4.50 KB of sequence requires: 2770s ~ linear (in seq length) hashing cost of 7.88 KB 2770s ~ linear (in seq length) expected anchor cost of 108.09 KB 2770s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2770s Expected memory usage (without anchors): 8.12 KB 2770s Expected memory usage (with anchors): 116.22 KB 2770s Hash parameters computed in 6.451 seconds 2770s Creating storage structures: 16 entries in 256 bytes space. 2770s Storage structures created in: 0.008 seconds 2770s 2770s Hashing NZ_GG705094.fna forwards 2770s 0%......... (T -0.026 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 10%......... (T -0.014 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 20%......... (T -0.009 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 30%......... (T -0.015 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 40%......... (T -0.018 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 90%........ 2770s Hashing NZ_GG705094.fna backwards 2770s 0%......... (T -0.121 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 10%......... (T -0.056 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 20%......... (T -0.034 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 30%......... (T -0.022 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 40%......... (T -0.015 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 50%......... (T -0.018 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 90%........ 2770s Hashing NZ_GG705094.gbk forwards 2770s 0%......... (T -0.055 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 10%......... (T -0.027 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 20%......... (T -0.017 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 30%......... (T -0.011 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 40%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 50%......... (T -0.010 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 90%........ 2770s Hashing NZ_GG705094.gbk backwards 2770s 0%......... (T -0.107 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 10%......... (T -0.075 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 20%......... (T -0.078 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 30%......... (T -0.051 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 40%......... (T -0.034 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 50%......... (T -0.023 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 60%......... (T -0.015 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 70%......... (T -0.009 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 90%........ 2770s Initial hashing took: 0.177 seconds 2770s Extracting anchors from hash-space. 2770s (T -0.071 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 6%. (T -0.150 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 18%. (T -0.115 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 31%. (T -0.095 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 43%. (T -0.060 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 56%. (T -0.069 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 68%. (T -0.039 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 81%. (T -0.014 seconds) ETA: Fri Mar 15 09:08:41 2024 2770s 93%. 2770s Anchor extraction completed in: 0.207 seconds 2770s Total anchors: 0 2770s Anchor extraction + merge time: 0.208 seconds 2770s Total processing time: 6.876 seconds 2770s Writing anchors... 2770s Total seeds used in anchors: 16 2770s Hash performance: 2770s Keys used: 16 out of 16 possible (100.00%). 2770s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2770s Average pigeons per pigeon hole: 1 2770s Writing 16 repeats...Output writing finished in: 0.141 seconds 2770s Total time: 7.017 seconds 2770s Murasaki finished! 2770s PASSED MURASAKI 2770s 2770s Testing Genepare on NZ_GG705094.fna 2770s 154 2770s PASSED GENEPARSE 2770s 2772s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2772s Testing mbfa on NZ_GG705094.fna 2772s PASSED mbfa 2772s 2772s Test Murasaki on NZ_GG705095.fna 2773s Verbosity level is: 0 2773s Writing to: output/test 2773s Pattern is: 101 2773s Max usable hash bits: 27 2773s Hit filter is: 0 2773s Hash table type is: EcoHash 2773s Hashing every: 1 base 2773s Histogram detail is: 0 2773s Hashing function is: 3 2773s Collision profiling is: disabled 2773s Repeats are: unmasked 2773s Mergefilter is at: 100 2773s Random seed: 1710493723 (automatic) 2773s Bitscore output: on 2773s Leave status records: no 2773s Join neighbors is: off 2773s Target memory is: 1.28 GB 2773s Retain members is: true 2773s Store repeatmap? yes 2773s Reverse complement data is generated on the fly 2773s Rifts allowed: 0 2773s Fuzzy Extension: yes 2773s Score by minimum pair: yes 2773s Gapped anchors: no 2773s Large sequence support is: enabled => seqpos is 8 bytes 2773s Murasaki version 1.68.6 (LARGESEQ) 2773s Loading NZ_GG705095.fna 2773s Read 1093bp (1.07 KBp) in 0.011 seconds (101.0 KBp/s) 2773s Done with forward strand (1093bp). Preparing reverse complement... 2773s <-> Reversing metdata. 2773s Done. 2773s Seq NZ_GG705095.fna loaded. 1.07 KB 2773s Loading NZ_GG705095.gbk 2773s Read 1093bp (1.07 KBp) in 0.025 seconds (42.1 KBp/s) 2773s Done with forward strand (1093bp). Preparing reverse complement... 2773s <-> Reversing metdata. 2773s Done. 2773s Seq NZ_GG705095.gbk loaded. 1.07 KB 2773s Sequence loading took: 0.046 seconds 2773s Forward frequencies: A:33.1199% C:16.8344% G:21.043% T:29.0027% 2773s Global base frequencies: A/T:62.1226% C/G:37.8774% 2773s Pat: 3 bases long with weight 2 2773s 1 101 2773s Computing hash parameters... 2773s Using 4 hashbits 2773s 0%......... (T -4.644 seconds) ETA: Fri Mar 15 09:08:49 2024 2774s 10%......... (T -4.091 seconds) ETA: Fri Mar 15 09:08:49 2024 2774s 20%......... (T -3.618 seconds) ETA: Fri Mar 15 09:08:49 2024 2775s 30%......... (T -3.382 seconds) ETA: Fri Mar 15 09:08:49 2024 2776s 40%......... (T -3.051 seconds) ETA: Fri Mar 15 09:08:50 2024 2776s 50%......... (T -2.286 seconds) ETA: Fri Mar 15 09:08:49 2024 2777s 60%......... (T -1.684 seconds) ETA: Fri Mar 15 09:08:49 2024 2777s 70%......... (T -1.078 seconds) ETA: Fri Mar 15 09:08:49 2024 2777s 80%......... (T -0.465 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 91%........ 2778s Acceptable hash function found after 1000 cycles. 2778s Best uses 2/2 bases and has 0 empties from 2 inputs. 2778s Score: 0.96875 (cf. worst: -4.51562) 2778s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2778s Total correlation penalty: 0 2778s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2778s 10 2778s == 2778s w[ 0]>>29: -.C 2778s w[ 0]>>30: A.- 2778s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 2778s Ecolist (optimistic): Expcted entries per list: 9 2778s Ecolist (optimistic): Minimum chunks per list: 4 2778s Would take minimum 256.000000 bytes to make perfect hash. 2778s Hashing 4.27 KB of sequence requires: 2778s ~ linear (in seq length) hashing cost of 7.46 KB 2778s ~ linear (in seq length) expected anchor cost of 102.47 KB 2778s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2778s Expected memory usage (without anchors): 7.71 KB 2778s Expected memory usage (with anchors): 110.18 KB 2778s Hash parameters computed in 5.535 seconds 2778s Creating storage structures: 16 entries in 256 bytes space. 2778s Storage structures created in: 0.021 seconds 2778s 2778s Hashing NZ_GG705095.fna forwards 2778s 0%......... (T -0.111 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 10%......... (T -0.051 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 20%......... (T -0.068 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 30%......... (T -0.065 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 40%......... (T -0.044 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 50%......... (T -0.029 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 60%......... (T -0.019 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 90%......... 2778s Hashing NZ_GG705095.fna backwards 2778s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 80%......... (T -0.000 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 90%......... 2778s Hashing NZ_GG705095.gbk forwards 2778s 0%......... (T -0.121 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 10%......... (T -0.056 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 20%......... (T -0.035 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 30%......... (T -0.023 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 40%......... (T -0.021 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 50%......... (T -0.014 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 60%......... (T -0.009 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 90%......... 2778s Hashing NZ_GG705095.gbk backwards 2778s 0%......... (T -0.067 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 10%......... (T -0.032 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 20%......... (T -0.019 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 30%......... (T -0.013 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 40%......... (T -0.009 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 50%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 90%......... 2778s Initial hashing took: 0.160 seconds 2778s Extracting anchors from hash-space. 2778s (T -0.022 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 6%. (T -0.109 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 18%. (T -0.080 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 31%. (T -0.072 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 43%. (T -0.068 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 56%. (T -0.080 seconds) ETA: Fri Mar 15 09:08:49 2024 2778s 68%. (T -0.048 seconds) ETA: Fri Mar 15 09:08:49 2024 2779s 81%. (T -0.016 seconds) ETA: Fri Mar 15 09:08:49 2024 2779s 93%. 2779s Anchor extraction completed in: 0.226 seconds 2779s Total anchors: 0 2779s Anchor extraction + merge time: 0.226 seconds 2779s Total processing time: 5.999 seconds 2779s Writing anchors... 2779s Total seeds used in anchors: 16 2779s Hash performance: 2779s Keys used: 16 out of 16 possible (100.00%). 2779s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2779s Average pigeons per pigeon hole: 1 2779s Writing 16 repeats...Output writing finished in: 0.138 seconds 2779s Total time: 6.138 seconds 2779s Murasaki finished! 2779s PASSED MURASAKI 2779s 2779s Testing Genepare on NZ_GG705095.fna 2779s 94 2779s PASSED GENEPARSE 2779s 2780s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2781s Testing mbfa on NZ_GG705095.fna 2781s PASSED mbfa 2781s 2781s Test Murasaki on NZ_GG705096.fna 2781s Verbosity level is: 0 2781s Writing to: output/test 2781s Pattern is: 101 2781s Max usable hash bits: 27 2781s Hit filter is: 0 2781s Hash table type is: EcoHash 2781s Hashing every: 1 base 2781s Histogram detail is: 0 2781s Hashing function is: 3 2781s Collision profiling is: disabled 2781s Repeats are: unmasked 2781s Mergefilter is at: 100 2781s Random seed: 1710493732 (automatic) 2781s Bitscore output: on 2781s Leave status records: no 2781s Join neighbors is: off 2781s Target memory is: 1.28 GB 2781s Retain members is: true 2781s Store repeatmap? yes 2781s Reverse complement data is generated on the fly 2781s Rifts allowed: 0 2781s Fuzzy Extension: yes 2781s Score by minimum pair: yes 2781s Gapped anchors: no 2781s Large sequence support is: enabled => seqpos is 8 bytes 2781s Murasaki version 1.68.6 (LARGESEQ) 2781s Loading NZ_GG705096.fna 2781s Read 1046bp (1.02 KBp) in 0.070 seconds (14.7 KBp/s) 2781s Done with forward strand (1046bp). Preparing reverse complement... 2781s <-> Reversing metdata. 2781s Done. 2781s Seq NZ_GG705096.fna loaded. 1.02 KB 2781s Loading NZ_GG705096.gbk 2781s Read 1046bp (1.02 KBp) in 0.065 seconds (15.7 KBp/s) 2781s Done with forward strand (1046bp). Preparing reverse complement... 2781s <-> Reversing metdata. 2781s Done. 2781s Seq NZ_GG705096.gbk loaded. 1.02 KB 2781s Sequence loading took: 0.252 seconds 2781s Forward frequencies: A:30.8795% C:24.4742% G:20.9369% T:23.7094% 2781s Global base frequencies: A/T:54.5889% C/G:45.4111% 2781s Pat: 3 bases long with weight 2 2781s 1 101 2781s Computing hash parameters... 2781s Using 4 hashbits 2782s 0%......... (T -6.289 seconds) ETA: Fri Mar 15 09:08:59 2024 2783s 10%......... (T -5.424 seconds) ETA: Fri Mar 15 09:08:59 2024 2783s 20%......... (T -4.377 seconds) ETA: Fri Mar 15 09:08:59 2024 2784s 30%......... (T -3.505 seconds) ETA: Fri Mar 15 09:08:58 2024 2784s 40%......... (T -2.925 seconds) ETA: Fri Mar 15 09:08:58 2024 2785s 50%......... (T -2.271 seconds) ETA: Fri Mar 15 09:08:58 2024 2785s 60%......... (T -1.602 seconds) ETA: Fri Mar 15 09:08:58 2024 2786s 70%......... (T -1.026 seconds) ETA: Fri Mar 15 09:08:58 2024 2786s 80%......... (T -0.444 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 91%........ 2786s Acceptable hash function found after 1000 cycles. 2786s Best uses 2/2 bases and has 0 empties from 2 inputs. 2786s Score: 0.96875 (cf. worst: -4.51562) 2786s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2786s Total correlation penalty: 0 2786s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2786s 10 2786s == 2786s w[ 0]>>29: -.C 2786s w[ 0]>>30: A.- 2786s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 2786s Ecolist (optimistic): Expcted entries per list: 9 2786s Ecolist (optimistic): Minimum chunks per list: 4 2786s Would take minimum 256.000000 bytes to make perfect hash. 2786s Hashing 4.09 KB of sequence requires: 2786s ~ linear (in seq length) hashing cost of 7.15 KB 2786s ~ linear (in seq length) expected anchor cost of 98.06 KB 2786s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2786s Expected memory usage (without anchors): 7.40 KB 2786s Expected memory usage (with anchors): 105.46 KB 2786s Hash parameters computed in 4.958 seconds 2786s Creating storage structures: 16 entries in 256 bytes space. 2786s Storage structures created in: 0.008 seconds 2786s 2786s Hashing NZ_GG705096.fna forwards 2786s 0%......... (T -0.022 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 10%......... (T -0.012 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 20%......... (T -0.008 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 30%......... (T -0.006 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 40%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 50%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 90%........ 2786s Hashing NZ_GG705096.fna backwards 2786s 0%......... (T -0.019 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 10%......... (T -0.010 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 20%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 30%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 40%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 50%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 60%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 70%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 90%........ 2786s Hashing NZ_GG705096.gbk forwards 2786s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 20%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 30%......... (T -0.014 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 40%......... (T -0.010 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 50%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 90%........ 2786s Hashing NZ_GG705096.gbk backwards 2786s 0%......... (T -0.019 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 10%......... (T -0.010 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 20%......... (T -0.007 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 30%......... (T -0.005 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 40%......... (T -0.004 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 50%......... (T -0.003 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 90%........ 2786s Initial hashing took: 0.098 seconds 2786s Extracting anchors from hash-space. 2786s (T -0.039 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 6%. (T -0.028 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 18%. (T -0.036 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 31%. (T -0.033 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 43%. (T -0.027 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 56%. (T -0.020 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 68%. (T -0.015 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 81%. (T -0.006 seconds) ETA: Fri Mar 15 09:08:57 2024 2786s 93%. 2786s Anchor extraction completed in: 0.078 seconds 2786s Total anchors: 0 2786s Anchor extraction + merge time: 0.079 seconds 2786s Total processing time: 5.406 seconds 2786s Writing anchors... 2786s Total seeds used in anchors: 16 2786s Hash performance: 2786s Keys used: 16 out of 16 possible (100.00%). 2786s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2786s Average pigeons per pigeon hole: 1 2787s Writing 16 repeats...Output writing finished in: 0.115 seconds 2787s Total time: 5.521 seconds 2787s Murasaki finished! 2787s PASSED MURASAKI 2787s 2787s Testing Genepare on NZ_GG705096.fna 2787s 47 2787s PASSED GENEPARSE 2787s 2788s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2788s Testing mbfa on NZ_GG705096.fna 2788s PASSED mbfa 2788s 2788s Test Murasaki on NZ_GG705097.fna 2788s Verbosity level is: 0 2788s Writing to: output/test 2788s Pattern is: 101 2788s Max usable hash bits: 27 2788s Hit filter is: 0 2788s Hash table type is: EcoHash 2788s Hashing every: 1 base 2788s Histogram detail is: 0 2788s Hashing function is: 3 2788s Collision profiling is: disabled 2788s Repeats are: unmasked 2788s Mergefilter is at: 100 2788s Random seed: 1710493739 (automatic) 2788s Bitscore output: on 2788s Leave status records: no 2788s Join neighbors is: off 2788s Target memory is: 1.28 GB 2788s Retain members is: true 2788s Store repeatmap? yes 2788s Reverse complement data is generated on the fly 2788s Rifts allowed: 0 2788s Fuzzy Extension: yes 2788s Score by minimum pair: yes 2788s Gapped anchors: no 2788s Large sequence support is: enabled => seqpos is 8 bytes 2788s Murasaki version 1.68.6 (LARGESEQ) 2788s Loading NZ_GG705097.fna 2788s Read 976bp (976 bytesp) in 0.009 seconds (104.8 KBp/s) 2788s Done with forward strand (976bp). Preparing reverse complement... 2788s <-> Reversing metdata. 2788s Done. 2788s Seq NZ_GG705097.fna loaded. 976 bytes 2788s Loading NZ_GG705097.gbk 2788s Read 976bp (976 bytesp) in 0.007 seconds (131.3 KBp/s) 2788s Done with forward strand (976bp). Preparing reverse complement... 2788s <-> Reversing metdata. 2788s Done. 2788s Seq NZ_GG705097.gbk loaded. 976 bytes 2788s Sequence loading took: 0.026 seconds 2788s Forward frequencies: A:33.5041% C:17.5205% G:17.8279% T:31.1475% 2788s Global base frequencies: A/T:64.6516% C/G:35.3484% 2788s Pat: 3 bases long with weight 2 2788s 1 101 2788s Computing hash parameters... 2788s Using 4 hashbits 2788s 0%......... (T -2.603 seconds) ETA: Fri Mar 15 09:09:02 2024 2789s 10%......... (T -2.029 seconds) ETA: Fri Mar 15 09:09:02 2024 2789s 20%......... (T -2.775 seconds) ETA: Fri Mar 15 09:09:03 2024 2790s 30%......... (T -2.553 seconds) ETA: Fri Mar 15 09:09:03 2024 2790s 40%......... (T -1.955 seconds) ETA: Fri Mar 15 09:09:03 2024 2790s 50%......... (T -1.503 seconds) ETA: Fri Mar 15 09:09:03 2024 2791s 60%......... (T -1.103 seconds) ETA: Fri Mar 15 09:09:03 2024 2791s 70%......... (T -0.701 seconds) ETA: Fri Mar 15 09:09:03 2024 2791s 80%......... (T -0.305 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 91%........ 2791s Acceptable hash function found after 1000 cycles. 2791s Best uses 2/2 bases and has 0 empties from 2 inputs. 2791s Score: 0.96875 (cf. worst: -4.51562) 2791s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2791s Total correlation penalty: 0 2791s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2791s 10 2791s == 2791s w[ 0]>>29: -.C 2791s w[ 0]>>30: A.- 2791s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2791s Ecolist (optimistic): Expcted entries per list: 8 2791s Ecolist (optimistic): Minimum chunks per list: 4 2791s Would take minimum 256.000000 bytes to make perfect hash. 2791s Hashing 3.81 KB of sequence requires: 2791s ~ linear (in seq length) hashing cost of 6.20 KB 2791s ~ linear (in seq length) expected anchor cost of 91.50 KB 2791s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2791s Expected memory usage (without anchors): 6.45 KB 2791s Expected memory usage (with anchors): 97.95 KB 2791s Hash parameters computed in 3.318 seconds 2791s Creating storage structures: 16 entries in 256 bytes space. 2791s Storage structures created in: 0.013 seconds 2791s 2791s Hashing NZ_GG705097.fna forwards 2791s 0%......... (T -0.092 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 10%......... (T -0.043 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 20%......... (T -0.026 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 30%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 40%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 50%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 90%......... 2791s Hashing NZ_GG705097.fna backwards 2791s 0%......... (T -0.042 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 10%......... (T -0.021 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 20%......... (T -0.013 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 30%......... (T -0.009 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 40%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 50%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 90%......... 2791s Hashing NZ_GG705097.gbk forwards 2791s 0%......... (T -0.071 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 10%......... (T -0.033 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 20%......... (T -0.020 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 30%......... (T -0.014 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 40%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 50%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 60%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 90%......... 2791s Hashing NZ_GG705097.gbk backwards 2791s 0%......... (T -0.036 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 10%......... (T -0.018 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 20%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 30%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 40%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 50%......... (T -0.009 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 60%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 90%......... 2791s Initial hashing took: 0.112 seconds 2791s Extracting anchors from hash-space. 2791s (T -0.021 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 6%. (T -0.043 seconds) ETA: Fri Mar 15 09:09:02 2024 2791s 18%. (T -0.030 seconds) ETA: Fri Mar 15 09:09:02 2024 2792s 31%. (T -0.036 seconds) ETA: Fri Mar 15 09:09:02 2024 2792s 43%. (T -0.031 seconds) ETA: Fri Mar 15 09:09:02 2024 2792s 56%. (T -0.023 seconds) ETA: Fri Mar 15 09:09:03 2024 2792s 68%. (T -0.014 seconds) ETA: Fri Mar 15 09:09:03 2024 2792s 81%. (T -0.005 seconds) ETA: Fri Mar 15 09:09:03 2024 2792s 93%. 2792s Anchor extraction completed in: 0.072 seconds 2792s Total anchors: 0 2792s Anchor extraction + merge time: 0.072 seconds 2792s Total processing time: 3.554 seconds 2792s Writing anchors... 2792s Total seeds used in anchors: 16 2792s Hash performance: 2792s Keys used: 16 out of 16 possible (100.00%). 2792s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2792s Average pigeons per pigeon hole: 1 2792s Writing 16 repeats...Output writing finished in: 0.069 seconds 2792s Total time: 3.623 seconds 2792s Murasaki finished! 2792s PASSED MURASAKI 2792s 2792s Testing Genepare on NZ_GG705097.fna 2792s 18446744073709551593 2792s PASSED GENEPARSE 2792s 2793s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2793s Testing mbfa on NZ_GG705097.fna 2793s PASSED mbfa 2793s 2793s Test Murasaki on NZ_GG705098.fna 2793s Verbosity level is: 0 2793s Writing to: output/test 2793s Pattern is: 101 2793s Max usable hash bits: 27 2793s Hit filter is: 0 2793s Hash table type is: EcoHash 2793s Hashing every: 1 base 2793s Histogram detail is: 0 2793s Hashing function is: 3 2793s Collision profiling is: disabled 2793s Repeats are: unmasked 2793s Mergefilter is at: 100 2793s Random seed: 1710493744 (automatic) 2793s Bitscore output: on 2793s Leave status records: no 2793s Join neighbors is: off 2793s Target memory is: 1.28 GB 2793s Retain members is: true 2793s Store repeatmap? yes 2793s Reverse complement data is generated on the fly 2793s Rifts allowed: 0 2793s Fuzzy Extension: yes 2793s Score by minimum pair: yes 2793s Gapped anchors: no 2793s Large sequence support is: enabled => seqpos is 8 bytes 2793s Murasaki version 1.68.6 (LARGESEQ) 2793s Loading NZ_GG705098.fna 2793s Read 959bp (959 bytesp) in 0.029 seconds (32.2 KBp/s) 2793s Done with forward strand (959bp). Preparing reverse complement... 2793s <-> Reversing metdata. 2793s Done. 2793s Seq NZ_GG705098.fna loaded. 959 bytes 2793s Loading NZ_GG705098.gbk 2793s Read 959bp (959 bytesp) in 0.008 seconds (122.8 KBp/s) 2793s Done with forward strand (959bp). Preparing reverse complement... 2793s <-> Reversing metdata. 2793s Done. 2793s Seq NZ_GG705098.gbk loaded. 959 bytes 2793s Sequence loading took: 0.054 seconds 2793s Forward frequencies: A:33.0553% C:20.6465% G:17.414% T:28.8843% 2793s Global base frequencies: A/T:61.9395% C/G:38.0605% 2793s Pat: 3 bases long with weight 2 2793s 1 101 2793s Computing hash parameters... 2793s Using 4 hashbits 2793s 0%......... (T -2.779 seconds) ETA: Fri Mar 15 09:09:07 2024 2793s 10%......... (T -2.294 seconds) ETA: Fri Mar 15 09:09:07 2024 2794s 20%......... (T -2.191 seconds) ETA: Fri Mar 15 09:09:07 2024 2794s 30%......... (T -1.742 seconds) ETA: Fri Mar 15 09:09:07 2024 2794s 40%......... (T -1.387 seconds) ETA: Fri Mar 15 09:09:07 2024 2794s 50%......... (T -1.106 seconds) ETA: Fri Mar 15 09:09:07 2024 2795s 60%......... (T -0.834 seconds) ETA: Fri Mar 15 09:09:07 2024 2795s 70%......... (T -0.662 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 80%......... (T -0.285 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 91%........ 2796s Acceptable hash function found after 1000 cycles. 2796s Best uses 2/2 bases and has 0 empties from 2 inputs. 2796s Score: 0.96875 (cf. worst: -4.51562) 2796s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2796s Total correlation penalty: 0 2796s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2796s 10 2796s == 2796s w[ 0]>>29: -.C 2796s w[ 0]>>30: A.- 2796s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2796s Ecolist (optimistic): Expcted entries per list: 8 2796s Ecolist (optimistic): Minimum chunks per list: 4 2796s Would take minimum 256.000000 bytes to make perfect hash. 2796s Hashing 3.75 KB of sequence requires: 2796s ~ linear (in seq length) hashing cost of 6.08 KB 2796s ~ linear (in seq length) expected anchor cost of 89.91 KB 2796s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2796s Expected memory usage (without anchors): 6.33 KB 2796s Expected memory usage (with anchors): 96.24 KB 2796s Hash parameters computed in 3.105 seconds 2796s Creating storage structures: 16 entries in 256 bytes space. 2796s Storage structures created in: 0.010 seconds 2796s 2796s Hashing NZ_GG705098.fna forwards 2796s 0%......... (T -0.037 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 10%......... (T -0.019 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 20%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 30%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 40%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 60%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 70%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 90%......... 2796s Hashing NZ_GG705098.fna backwards 2796s 0%......... (T -0.061 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 10%......... (T -0.029 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 20%......... (T -0.018 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 30%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 40%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 50%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 60%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 70%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 90%......... 2796s Hashing NZ_GG705098.gbk forwards 2796s 0%......... (T -0.024 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 10%......... (T -0.013 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 20%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 30%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 40%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 50%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 90%......... 2796s Hashing NZ_GG705098.gbk backwards 2796s 0%......... (T -0.134 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 10%......... (T -0.062 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 20%......... (T -0.037 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 30%......... (T -0.024 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 50%......... (T -0.018 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 90%......... 2796s Initial hashing took: 0.157 seconds 2796s Extracting anchors from hash-space. 2796s (T -0.086 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 6%. (T -0.057 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 18%. (T -0.056 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 31%. (T -0.061 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 43%. (T -0.040 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 56%. (T -0.026 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 68%. (T -0.015 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 81%. (T -0.006 seconds) ETA: Fri Mar 15 09:09:07 2024 2796s 93%. 2796s Anchor extraction completed in: 0.086 seconds 2796s Total anchors: 0 2796s Anchor extraction + merge time: 0.086 seconds 2796s Total processing time: 3.425 seconds 2796s Writing anchors... 2796s Total seeds used in anchors: 16 2796s Hash performance: 2796s Keys used: 16 out of 16 possible (100.00%). 2796s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2796s Average pigeons per pigeon hole: 1 2796s Writing 16 repeats...Output writing finished in: 0.024 seconds 2796s Total time: 3.449 seconds 2796s Murasaki finished! 2796s PASSED MURASAKI 2796s 2796s Testing Genepare on NZ_GG705098.fna 2796s 18446744073709551576 2796s PASSED GENEPARSE 2796s 2797s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2797s Testing mbfa on NZ_GG705098.fna 2797s PASSED mbfa 2797s 2797s Test Murasaki on NZ_GG705099.fna 2798s Verbosity level is: 0 2798s Writing to: output/test 2798s Pattern is: 101 2798s Max usable hash bits: 27 2798s Hit filter is: 0 2798s Hash table type is: EcoHash 2798s Hashing every: 1 base 2798s Histogram detail is: 0 2798s Hashing function is: 3 2798s Collision profiling is: disabled 2798s Repeats are: unmasked 2798s Mergefilter is at: 100 2798s Random seed: 1710493749 (automatic) 2798s Bitscore output: on 2798s Leave status records: no 2798s Join neighbors is: off 2798s Target memory is: 1.28 GB 2798s Retain members is: true 2798s Store repeatmap? yes 2798s Reverse complement data is generated on the fly 2798s Rifts allowed: 0 2798s Fuzzy Extension: yes 2798s Score by minimum pair: yes 2798s Gapped anchors: no 2798s Large sequence support is: enabled => seqpos is 8 bytes 2798s Murasaki version 1.68.6 (LARGESEQ) 2798s Loading NZ_GG705099.fna 2798s Read 927bp (927 bytesp) in 0.030 seconds (30.7 KBp/s) 2798s Done with forward strand (927bp). Preparing reverse complement... 2798s <-> Reversing metdata. 2798s Done. 2798s Seq NZ_GG705099.fna loaded. 927 bytes 2798s Loading NZ_GG705099.gbk 2798s Read 927bp (927 bytesp) in 0.021 seconds (43.5 KBp/s) 2798s Done with forward strand (927bp). Preparing reverse complement... 2798s <-> Reversing metdata. 2798s Done. 2798s Seq NZ_GG705099.gbk loaded. 927 bytes 2798s Sequence loading took: 0.080 seconds 2798s Forward frequencies: A:32.2546% C:16.5049% G:12.6214% T:38.6192% 2798s Global base frequencies: A/T:70.8738% C/G:29.1262% 2798s Pat: 3 bases long with weight 2 2798s 1 101 2798s Computing hash parameters... 2798s Using 4 hashbits 2798s 0%......... (T -2.146 seconds) ETA: Fri Mar 15 09:09:11 2024 2798s 10%......... (T -2.096 seconds) ETA: Fri Mar 15 09:09:11 2024 2799s 20%......... (T -2.307 seconds) ETA: Fri Mar 15 09:09:12 2024 2799s 30%......... (T -2.206 seconds) ETA: Fri Mar 15 09:09:12 2024 2800s 40%......... (T -1.923 seconds) ETA: Fri Mar 15 09:09:13 2024 2800s 50%......... (T -1.551 seconds) ETA: Fri Mar 15 09:09:13 2024 2800s 60%......... (T -1.147 seconds) ETA: Fri Mar 15 09:09:13 2024 2801s 70%......... (T -0.758 seconds) ETA: Fri Mar 15 09:09:13 2024 2801s 80%......... (T -0.327 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 91%........ 2801s Acceptable hash function found after 1000 cycles. 2801s Best uses 2/2 bases and has 0 empties from 2 inputs. 2801s Score: 0.96875 (cf. worst: -4.51562) 2801s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2801s Total correlation penalty: 0 2801s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2801s 10 2801s == 2801s w[ 0]>>29: -.C 2801s w[ 0]>>30: A.- 2801s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2801s Ecolist (optimistic): Expcted entries per list: 8 2801s Ecolist (optimistic): Minimum chunks per list: 4 2801s Would take minimum 256.000000 bytes to make perfect hash. 2801s Hashing 3.62 KB of sequence requires: 2801s ~ linear (in seq length) hashing cost of 5.88 KB 2801s ~ linear (in seq length) expected anchor cost of 86.91 KB 2801s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2801s Expected memory usage (without anchors): 6.13 KB 2801s Expected memory usage (with anchors): 93.03 KB 2801s Hash parameters computed in 3.666 seconds 2801s Creating storage structures: 16 entries in 256 bytes space. 2801s Storage structures created in: 0.012 seconds 2801s 2801s Hashing NZ_GG705099.fna forwards 2801s 0%......... (T -0.104 seconds) ETA: Fri Mar 15 09:09:13 2024 2801s 10%......... (T -0.049 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 20%......... (T -0.029 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 30%......... (T -0.024 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 90%........ 2801s Hashing NZ_GG705099.fna backwards 2801s 0%......... (T -0.132 seconds) ETA: Fri Mar 15 09:09:13 2024 2801s 10%......... (T -0.061 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 20%......... (T -0.037 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 30%......... (T -0.024 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:12 2024 2801s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 90%........ 2802s Hashing NZ_GG705099.gbk forwards 2802s 0%......... (T -0.035 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 10%......... (T -0.018 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 20%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 30%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 40%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 60%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:09:12 2024 2802s 90%........ 2802s Hashing NZ_GG705099.gbk backwards 2802s 0%......... (T -0.022 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 10%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 20%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 30%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 40%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 50%......... (T -0.009 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 60%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 90%........ 2802s Initial hashing took: 0.118 seconds 2802s Extracting anchors from hash-space. 2802s (T -0.011 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 6%. (T -0.044 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 18%. (T -0.030 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 31%. (T -0.033 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 43%. (T -0.031 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 56%. (T -0.023 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 68%. (T -0.013 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 81%. (T -0.005 seconds) ETA: Fri Mar 15 09:09:13 2024 2802s 93%. 2802s Anchor extraction completed in: 0.064 seconds 2802s Total anchors: 0 2802s Anchor extraction + merge time: 0.064 seconds 2802s Total processing time: 3.965 seconds 2802s Writing anchors... 2802s Total seeds used in anchors: 16 2802s Hash performance: 2802s Keys used: 16 out of 16 possible (100.00%). 2802s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2802s Average pigeons per pigeon hole: 1 2802s Writing 16 repeats...Output writing finished in: 0.030 seconds 2802s Total time: 3.995 seconds 2802s Murasaki finished! 2802s PASSED MURASAKI 2802s 2802s Testing Genepare on NZ_GG705099.fna 2802s 18446744073709551544 2802s PASSED GENEPARSE 2802s 2803s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2803s Testing mbfa on NZ_GG705099.fna 2803s PASSED mbfa 2803s 2803s Test Murasaki on NZ_GG705100.fna 2803s Verbosity level is: 0 2803s Writing to: output/test 2803s Pattern is: 101 2803s Max usable hash bits: 27 2803s Hit filter is: 0 2803s Hash table type is: EcoHash 2803s Hashing every: 1 base 2803s Histogram detail is: 0 2803s Hashing function is: 3 2803s Collision profiling is: disabled 2803s Repeats are: unmasked 2803s Mergefilter is at: 100 2803s Random seed: 1710493754 (automatic) 2803s Bitscore output: on 2803s Leave status records: no 2803s Join neighbors is: off 2803s Target memory is: 1.28 GB 2803s Retain members is: true 2803s Store repeatmap? yes 2803s Reverse complement data is generated on the fly 2803s Rifts allowed: 0 2803s Fuzzy Extension: yes 2803s Score by minimum pair: yes 2803s Gapped anchors: no 2803s Large sequence support is: enabled => seqpos is 8 bytes 2803s Murasaki version 1.68.6 (LARGESEQ) 2803s Loading NZ_GG705100.fna 2803s Read 885bp (885 bytesp) in 0.031 seconds (28.3 KBp/s) 2803s Done with forward strand (885bp). Preparing reverse complement... 2803s <-> Reversing metdata. 2803s Done. 2803s Seq NZ_GG705100.fna loaded. 885 bytes 2803s Loading NZ_GG705100.gbk 2803s Read 885bp (885 bytesp) in 0.019 seconds (44.7 KBp/s) 2803s Done with forward strand (885bp). Preparing reverse complement... 2803s <-> Reversing metdata. 2803s Done. 2803s Seq NZ_GG705100.gbk loaded. 885 bytes 2803s Sequence loading took: 0.057 seconds 2803s Forward frequencies: A:26.6667% C:18.9831% G:15.5932% T:38.7571% 2803s Global base frequencies: A/T:65.4237% C/G:34.5763% 2803s Pat: 3 bases long with weight 2 2803s 1 101 2803s Computing hash parameters... 2803s Using 4 hashbits 2804s 0%......... (T -5.502 seconds) ETA: Fri Mar 15 09:09:20 2024 2804s 10%......... (T -4.132 seconds) ETA: Fri Mar 15 09:09:19 2024 2804s 20%......... (T -3.181 seconds) ETA: Fri Mar 15 09:09:19 2024 2805s 30%......... (T -2.647 seconds) ETA: Fri Mar 15 09:09:18 2024 2805s 40%......... (T -2.289 seconds) ETA: Fri Mar 15 09:09:19 2024 2806s 50%......... (T -1.889 seconds) ETA: Fri Mar 15 09:09:19 2024 2806s 60%......... (T -1.344 seconds) ETA: Fri Mar 15 09:09:18 2024 2806s 70%......... (T -0.846 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 80%......... (T -0.357 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 91%........ 2807s Acceptable hash function found after 1000 cycles. 2807s Best uses 2/2 bases and has 0 empties from 2 inputs. 2807s Score: 0.96875 (cf. worst: -4.51562) 2807s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2807s Total correlation penalty: 0 2807s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2807s 10 2807s == 2807s w[ 0]>>29: -.C 2807s w[ 0]>>30: A.- 2807s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2807s Ecolist (optimistic): Expcted entries per list: 8 2807s Ecolist (optimistic): Minimum chunks per list: 4 2807s Would take minimum 256.000000 bytes to make perfect hash. 2807s Hashing 3.46 KB of sequence requires: 2807s ~ linear (in seq length) hashing cost of 5.61 KB 2807s ~ linear (in seq length) expected anchor cost of 82.97 KB 2807s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2807s Expected memory usage (without anchors): 5.86 KB 2807s Expected memory usage (with anchors): 88.83 KB 2807s Hash parameters computed in 3.843 seconds 2807s Creating storage structures: 16 entries in 256 bytes space. 2807s Storage structures created in: 0.008 seconds 2807s 2807s Hashing NZ_GG705100.fna forwards 2807s 0%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 10%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 20%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 90%........ 2807s Hashing NZ_GG705100.fna backwards 2807s 0%......... (T -0.059 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 10%......... (T -0.028 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 20%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 30%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 40%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 90%........ 2807s Hashing NZ_GG705100.gbk forwards 2807s 0%......... (T -0.084 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 10%......... (T -0.042 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 20%......... (T -0.025 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 30%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 40%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 50%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 90%........ 2807s Hashing NZ_GG705100.gbk backwards 2807s 0%......... (T -0.058 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 10%......... (T -0.034 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 20%......... (T -0.021 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 30%......... (T -0.014 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 40%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 50%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 60%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 90%........ 2807s Initial hashing took: 0.106 seconds 2807s Extracting anchors from hash-space. 2807s (T -0.020 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 6%. (T -0.060 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 18%. (T -0.046 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 31%. (T -0.038 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 43%. (T -0.028 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 56%. (T -0.020 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 68%. (T -0.011 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 81%. (T -0.005 seconds) ETA: Fri Mar 15 09:09:18 2024 2807s 93%. 2807s Anchor extraction completed in: 0.068 seconds 2807s Total anchors: 0 2807s Anchor extraction + merge time: 0.068 seconds 2807s Total processing time: 4.090 seconds 2807s Writing anchors... 2807s Total seeds used in anchors: 16 2807s Hash performance: 2807s Keys used: 16 out of 16 possible (100.00%). 2807s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2807s Average pigeons per pigeon hole: 1 2807s Writing 16 repeats...Output writing finished in: 0.046 seconds 2807s Total time: 4.136 seconds 2807s Murasaki finished! 2807s PASSED MURASAKI 2807s 2807s Testing Genepare on NZ_GG705100.fna 2807s 18446744073709551502 2807s PASSED GENEPARSE 2807s 2808s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2808s Testing mbfa on NZ_GG705100.fna 2808s PASSED mbfa 2808s 2808s Test Murasaki on NZ_GG705101.fna 2808s Verbosity level is: 0 2808s Writing to: output/test 2808s Pattern is: 101 2808s Max usable hash bits: 27 2808s Hit filter is: 0 2808s Hash table type is: EcoHash 2808s Hashing every: 1 base 2808s Histogram detail is: 0 2808s Hashing function is: 3 2808s Collision profiling is: disabled 2808s Repeats are: unmasked 2808s Mergefilter is at: 100 2808s Random seed: 1710493759 (automatic) 2808s Bitscore output: on 2808s Leave status records: no 2808s Join neighbors is: off 2808s Target memory is: 1.28 GB 2808s Retain members is: true 2808s Store repeatmap? yes 2808s Reverse complement data is generated on the fly 2808s Rifts allowed: 0 2808s Fuzzy Extension: yes 2808s Score by minimum pair: yes 2808s Gapped anchors: no 2808s Large sequence support is: enabled => seqpos is 8 bytes 2808s Murasaki version 1.68.6 (LARGESEQ) 2808s Loading NZ_GG705101.fna 2808s Read 832bp (832 bytesp) in 0.009 seconds (87.1 KBp/s) 2808s Done with forward strand (832bp). Preparing reverse complement... 2808s <-> Reversing metdata. 2808s Done. 2808s Seq NZ_GG705101.fna loaded. 832 bytes 2808s Loading NZ_GG705101.gbk 2808s Read 832bp (832 bytesp) in 0.007 seconds (115.0 KBp/s) 2808s Done with forward strand (832bp). Preparing reverse complement... 2808s <-> Reversing metdata. 2808s Done. 2808s Seq NZ_GG705101.gbk loaded. 832 bytes 2808s Sequence loading took: 0.025 seconds 2808s Forward frequencies: A:33.6538% C:15.9856% G:18.149% T:32.2115% 2808s Global base frequencies: A/T:65.8654% C/G:34.1346% 2808s Pat: 3 bases long with weight 2 2808s 1 101 2808s Computing hash parameters... 2808s Using 4 hashbits 2809s 0%......... (T -2.977 seconds) ETA: Fri Mar 15 09:09:22 2024 2809s 10%......... (T -2.934 seconds) ETA: Fri Mar 15 09:09:23 2024 2809s 20%......... (T -2.251 seconds) ETA: Fri Mar 15 09:09:22 2024 2809s 30%......... (T -1.829 seconds) ETA: Fri Mar 15 09:09:22 2024 2810s 40%......... (T -1.537 seconds) ETA: Fri Mar 15 09:09:22 2024 2810s 50%......... (T -1.261 seconds) ETA: Fri Mar 15 09:09:22 2024 2810s 60%......... (T -0.931 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 70%......... (T -0.606 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 80%......... (T -0.266 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 91%........ 2811s Acceptable hash function found after 1000 cycles. 2811s Best uses 2/2 bases and has 0 empties from 2 inputs. 2811s Score: 0.96875 (cf. worst: -4.51562) 2811s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2811s Total correlation penalty: 0 2811s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2811s 10 2811s == 2811s w[ 0]>>29: -.C 2811s w[ 0]>>30: A.- 2811s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2811s Ecolist (optimistic): Expcted entries per list: 8 2811s Ecolist (optimistic): Minimum chunks per list: 4 2811s Would take minimum 256.000000 bytes to make perfect hash. 2811s Hashing 3.25 KB of sequence requires: 2811s ~ linear (in seq length) hashing cost of 5.28 KB 2811s ~ linear (in seq length) expected anchor cost of 78.00 KB 2811s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2811s Expected memory usage (without anchors): 5.53 KB 2811s Expected memory usage (with anchors): 83.53 KB 2811s Hash parameters computed in 2.916 seconds 2811s Creating storage structures: 16 entries in 256 bytes space. 2811s Storage structures created in: 0.009 seconds 2811s 2811s Hashing NZ_GG705101.fna forwards 2811s 0%......... (T -0.025 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 10%......... (T -0.013 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 20%......... (T -0.009 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 30%......... (T -0.015 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 40%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 50%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 91%........ 2811s Hashing NZ_GG705101.fna backwards 2811s 0%......... (T -0.055 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 10%......... (T -0.027 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 20%......... (T -0.024 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 30%......... (T -0.016 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 40%......... (T -0.015 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 91%........ 2811s Hashing NZ_GG705101.gbk forwards 2811s 0%......... (T -0.092 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 10%......... (T -0.060 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 20%......... (T -0.036 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 30%......... (T -0.024 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 40%......... (T -0.016 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 91%........ 2811s Hashing NZ_GG705101.gbk backwards 2811s 0%......... (T -0.059 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 10%......... (T -0.056 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 20%......... (T -0.034 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 30%......... (T -0.026 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 40%......... (T -0.021 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 50%......... (T -0.015 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 60%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 91%........ 2811s Initial hashing took: 0.126 seconds 2811s Extracting anchors from hash-space. 2811s (T -0.053 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 6%. (T -0.040 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 18%. (T -0.030 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 31%. (T -0.085 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 43%. (T -0.075 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 56%. (T -0.050 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 68%. (T -0.025 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 81%. (T -0.009 seconds) ETA: Fri Mar 15 09:09:22 2024 2811s 93%. 2811s Anchor extraction completed in: 0.120 seconds 2811s Total anchors: 0 2811s Anchor extraction + merge time: 0.121 seconds 2811s Total processing time: 3.202 seconds 2811s Writing anchors... 2811s Total seeds used in anchors: 16 2811s Hash performance: 2811s Keys used: 16 out of 16 possible (100.00%). 2811s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2811s Average pigeons per pigeon hole: 1 2811s Writing 16 repeats...Output writing finished in: 0.037 seconds 2811s Total time: 3.239 seconds 2811s Murasaki finished! 2811s PASSED MURASAKI 2811s 2811s Testing Genepare on NZ_GG705101.fna 2811s 18446744073709551449 2811s PASSED GENEPARSE 2812s 2812s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2812s Testing mbfa on NZ_GG705101.fna 2813s PASSED mbfa 2813s 2813s Test Murasaki on NZ_GG705102.fna 2813s Verbosity level is: 0 2813s Writing to: output/test 2813s Pattern is: 101 2813s Max usable hash bits: 27 2813s Hit filter is: 0 2813s Hash table type is: EcoHash 2813s Hashing every: 1 base 2813s Histogram detail is: 0 2813s Hashing function is: 3 2813s Collision profiling is: disabled 2813s Repeats are: unmasked 2813s Mergefilter is at: 100 2813s Random seed: 1710493764 (automatic) 2813s Bitscore output: on 2813s Leave status records: no 2813s Join neighbors is: off 2813s Target memory is: 1.28 GB 2813s Retain members is: true 2813s Store repeatmap? yes 2813s Reverse complement data is generated on the fly 2813s Rifts allowed: 0 2813s Fuzzy Extension: yes 2813s Score by minimum pair: yes 2813s Gapped anchors: no 2813s Large sequence support is: enabled => seqpos is 8 bytes 2813s Murasaki version 1.68.6 (LARGESEQ) 2813s Loading NZ_GG705102.fna 2813s Read 828bp (828 bytesp) in 0.009 seconds (93.6 KBp/s) 2813s Done with forward strand (828bp). Preparing reverse complement... 2813s <-> Reversing metdata. 2813s Done. 2813s Seq NZ_GG705102.fna loaded. 828 bytes 2813s Loading NZ_GG705102.gbk 2813s Read 828bp (828 bytesp) in 0.007 seconds (112.4 KBp/s) 2813s Done with forward strand (828bp). Preparing reverse complement... 2813s <-> Reversing metdata. 2813s Done. 2813s Seq NZ_GG705102.gbk loaded. 828 bytes 2813s Sequence loading took: 0.026 seconds 2813s Forward frequencies: A:29.8309% C:22.4638% G:25% T:22.7053% 2813s Global base frequencies: A/T:52.5362% C/G:47.4638% 2813s Pat: 3 bases long with weight 2 2813s 1 101 2813s Computing hash parameters... 2813s Using 4 hashbits 2813s 0%......... (T -2.602 seconds) ETA: Fri Mar 15 09:09:27 2024 2813s 10%......... (T -2.183 seconds) ETA: Fri Mar 15 09:09:26 2024 2813s 20%......... (T -1.800 seconds) ETA: Fri Mar 15 09:09:26 2024 2814s 30%......... (T -1.546 seconds) ETA: Fri Mar 15 09:09:26 2024 2814s 40%......... (T -1.259 seconds) ETA: Fri Mar 15 09:09:26 2024 2814s 50%......... (T -1.070 seconds) ETA: Fri Mar 15 09:09:26 2024 2815s 60%......... (T -0.787 seconds) ETA: Fri Mar 15 09:09:26 2024 2815s 70%......... (T -0.543 seconds) ETA: Fri Mar 15 09:09:26 2024 2815s 80%......... (T -0.257 seconds) ETA: Fri Mar 15 09:09:26 2024 2816s 91%........ 2816s Acceptable hash function found after 1000 cycles. 2816s Best uses 2/2 bases and has 0 empties from 2 inputs. 2816s Score: 0.96875 (cf. worst: -4.51562) 2816s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2816s Total correlation penalty: 0 2816s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2816s 10 2816s == 2816s w[ 0]>>29: -.C 2816s w[ 0]>>30: A.- 2816s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2816s Ecolist (optimistic): Expcted entries per list: 8 2816s Ecolist (optimistic): Minimum chunks per list: 4 2816s Would take minimum 256.000000 bytes to make perfect hash. 2816s Hashing 3.23 KB of sequence requires: 2816s ~ linear (in seq length) hashing cost of 5.26 KB 2816s ~ linear (in seq length) expected anchor cost of 77.62 KB 2816s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2816s Expected memory usage (without anchors): 5.51 KB 2816s Expected memory usage (with anchors): 83.13 KB 2816s Hash parameters computed in 2.984 seconds 2816s Creating storage structures: 16 entries in 256 bytes space. 2816s Storage structures created in: 0.014 seconds 2816s 2816s Hashing NZ_GG705102.fna forwards 2816s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 40%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 60%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 90%........ 2816s Hashing NZ_GG705102.fna backwards 2816s 0%......... (T -0.050 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 10%......... (T -0.024 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 20%......... (T -0.015 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 30%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 40%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 50%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 60%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 90%........ 2816s Hashing NZ_GG705102.gbk forwards 2816s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 10%......... (T -0.063 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 20%......... (T -0.038 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 30%......... (T -0.025 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 40%......... (T -0.022 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 50%......... (T -0.015 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 60%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 90%........ 2816s Hashing NZ_GG705102.gbk backwards 2816s 0%......... (T -0.144 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 10%......... (T -0.076 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 20%......... (T -0.059 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 30%......... (T -0.042 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 40%......... (T -0.029 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 50%......... (T -0.020 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 60%......... (T -0.013 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 90%........ 2816s Initial hashing took: 0.166 seconds 2816s Extracting anchors from hash-space. 2816s (T -0.019 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 6%. (T -0.065 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 18%. (T -0.057 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 31%. (T -0.044 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 43%. (T -0.032 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 56%. (T -0.022 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 68%. (T -0.013 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 81%. (T -0.005 seconds) ETA: Fri Mar 15 09:09:27 2024 2816s 93%. 2816s Anchor extraction completed in: 0.073 seconds 2816s Total anchors: 0 2816s Anchor extraction + merge time: 0.075 seconds 2816s Total processing time: 3.274 seconds 2816s Writing anchors... 2816s Total seeds used in anchors: 16 2816s Hash performance: 2816s Keys used: 16 out of 16 possible (100.00%). 2816s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2816s Average pigeons per pigeon hole: 1 2816s Writing 16 repeats...Output writing finished in: 0.025 seconds 2816s Total time: 3.299 seconds 2816s Murasaki finished! 2816s PASSED MURASAKI 2816s 2816s Testing Genepare on NZ_GG705102.fna 2816s 18446744073709551445 2816s PASSED GENEPARSE 2816s 2817s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2817s Testing mbfa on NZ_GG705102.fna 2817s PASSED mbfa 2817s 2817s Test Murasaki on NZ_GG705103.fna 2817s Verbosity level is: 0 2817s Writing to: output/test 2817s Pattern is: 101 2817s Max usable hash bits: 27 2817s Hit filter is: 0 2817s Hash table type is: EcoHash 2817s Hashing every: 1 base 2817s Histogram detail is: 0 2817s Hashing function is: 3 2817s Collision profiling is: disabled 2817s Repeats are: unmasked 2817s Mergefilter is at: 100 2817s Random seed: 1710493768 (automatic) 2817s Bitscore output: on 2817s Leave status records: no 2817s Join neighbors is: off 2817s Target memory is: 1.28 GB 2817s Retain members is: true 2817s Store repeatmap? yes 2817s Reverse complement data is generated on the fly 2817s Rifts allowed: 0 2817s Fuzzy Extension: yes 2817s Score by minimum pair: yes 2817s Gapped anchors: no 2817s Large sequence support is: enabled => seqpos is 8 bytes 2817s Murasaki version 1.68.6 (LARGESEQ) 2817s Loading NZ_GG705103.fna 2817s Read 828bp (828 bytesp) in 0.010 seconds (77.5 KBp/s) 2817s Done with forward strand (828bp). Preparing reverse complement... 2817s <-> Reversing metdata. 2817s Done. 2817s Seq NZ_GG705103.fna loaded. 828 bytes 2817s Loading NZ_GG705103.gbk 2817s Read 828bp (828 bytesp) in 0.008 seconds (101.4 KBp/s) 2817s Done with forward strand (828bp). Preparing reverse complement... 2817s <-> Reversing metdata. 2817s Done. 2817s Seq NZ_GG705103.gbk loaded. 828 bytes 2817s Sequence loading took: 0.027 seconds 2817s Forward frequencies: A:31.1594% C:20.6522% G:22.2222% T:25.9662% 2817s Global base frequencies: A/T:57.1256% C/G:42.8744% 2817s Pat: 3 bases long with weight 2 2817s 1 101 2817s Computing hash parameters... 2817s Using 4 hashbits 2817s 0%......... (T -2.365 seconds) ETA: Fri Mar 15 09:09:31 2024 2818s 10%......... (T -1.987 seconds) ETA: Fri Mar 15 09:09:31 2024 2818s 20%......... (T -1.671 seconds) ETA: Fri Mar 15 09:09:30 2024 2818s 30%......... (T -1.422 seconds) ETA: Fri Mar 15 09:09:30 2024 2818s 40%......... (T -1.176 seconds) ETA: Fri Mar 15 09:09:30 2024 2819s 50%......... (T -0.938 seconds) ETA: Fri Mar 15 09:09:30 2024 2819s 60%......... (T -0.778 seconds) ETA: Fri Mar 15 09:09:31 2024 2819s 70%......... (T -0.516 seconds) ETA: Fri Mar 15 09:09:31 2024 2819s 80%......... (T -0.227 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 91%........ 2820s Acceptable hash function found after 1000 cycles. 2820s Best uses 2/2 bases and has 0 empties from 2 inputs. 2820s Score: 0.96875 (cf. worst: -4.51562) 2820s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2820s Total correlation penalty: 0 2820s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2820s 10 2820s == 2820s w[ 0]>>29: -.C 2820s w[ 0]>>30: A.- 2820s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2820s Ecolist (optimistic): Expcted entries per list: 8 2820s Ecolist (optimistic): Minimum chunks per list: 4 2820s Would take minimum 256.000000 bytes to make perfect hash. 2820s Hashing 3.23 KB of sequence requires: 2820s ~ linear (in seq length) hashing cost of 5.26 KB 2820s ~ linear (in seq length) expected anchor cost of 77.62 KB 2820s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2820s Expected memory usage (without anchors): 5.51 KB 2820s Expected memory usage (with anchors): 83.13 KB 2820s Hash parameters computed in 2.696 seconds 2820s Creating storage structures: 16 entries in 256 bytes space. 2820s Storage structures created in: 0.009 seconds 2820s 2820s Hashing NZ_GG705103.fna forwards 2820s 0%......... (T -0.072 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 10%......... (T -0.034 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 20%......... (T -0.021 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 30%......... (T -0.014 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 40%......... (T -0.014 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 50%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 90%........ 2820s Hashing NZ_GG705103.fna backwards 2820s 0%......... (T -0.089 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 10%......... (T -0.055 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 20%......... (T -0.034 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 30%......... (T -0.022 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 90%........ 2820s Hashing NZ_GG705103.gbk forwards 2820s 0%......... (T -0.094 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 10%......... (T -0.044 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 20%......... (T -0.026 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 30%......... (T -0.018 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 40%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 50%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 90%........ 2820s Hashing NZ_GG705103.gbk backwards 2820s 0%......... (T -0.100 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 10%......... (T -0.072 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 20%......... (T -0.068 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 30%......... (T -0.045 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 40%......... (T -0.030 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 50%......... (T -0.025 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 60%......... (T -0.016 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 70%......... (T -0.009 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 90%........ 2820s Initial hashing took: 0.144 seconds 2820s Extracting anchors from hash-space. 2820s (T -0.331 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 6%. (T -0.233 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 18%. (T -0.160 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 31%. (T -0.114 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 43%. (T -0.074 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 56%. (T -0.049 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 68%. (T -0.026 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 81%. (T -0.009 seconds) ETA: Fri Mar 15 09:09:31 2024 2820s 93%. 2820s Anchor extraction completed in: 0.121 seconds 2820s Total anchors: 0 2820s Anchor extraction + merge time: 0.121 seconds 2820s Total processing time: 3.007 seconds 2820s Writing anchors... 2820s Total seeds used in anchors: 16 2820s Hash performance: 2820s Keys used: 16 out of 16 possible (100.00%). 2820s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2820s Average pigeons per pigeon hole: 1 2820s Writing 16 repeats...Output writing finished in: 0.023 seconds 2820s Total time: 3.030 seconds 2820s Murasaki finished! 2820s PASSED MURASAKI 2820s 2820s Testing Genepare on NZ_GG705103.fna 2820s 18446744073709551445 2820s PASSED GENEPARSE 2820s 2821s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2821s Testing mbfa on NZ_GG705103.fna 2822s PASSED mbfa 2822s 2822s Test Murasaki on NZ_GG705104.fna 2822s Verbosity level is: 0 2822s Writing to: output/test 2822s Pattern is: 101 2822s Max usable hash bits: 27 2822s Hit filter is: 0 2822s Hash table type is: EcoHash 2822s Hashing every: 1 base 2822s Histogram detail is: 0 2822s Hashing function is: 3 2822s Collision profiling is: disabled 2822s Repeats are: unmasked 2822s Mergefilter is at: 100 2822s Random seed: 1710493773 (automatic) 2822s Bitscore output: on 2822s Leave status records: no 2822s Join neighbors is: off 2822s Target memory is: 1.28 GB 2822s Retain members is: true 2822s Store repeatmap? yes 2822s Reverse complement data is generated on the fly 2822s Rifts allowed: 0 2822s Fuzzy Extension: yes 2822s Score by minimum pair: yes 2822s Gapped anchors: no 2822s Large sequence support is: enabled => seqpos is 8 bytes 2822s Murasaki version 1.68.6 (LARGESEQ) 2822s Loading NZ_GG705104.fna 2822s Read 821bp (821 bytesp) in 0.029 seconds (27.3 KBp/s) 2822s Done with forward strand (821bp). Preparing reverse complement... 2822s <-> Reversing metdata. 2822s Done. 2822s Seq NZ_GG705104.fna loaded. 821 bytes 2822s Loading NZ_GG705104.gbk 2822s Read 821bp (821 bytesp) in 0.008 seconds (106.6 KBp/s) 2822s Done with forward strand (821bp). Preparing reverse complement... 2822s <-> Reversing metdata. 2822s Done. 2822s Seq NZ_GG705104.gbk loaded. 821 bytes 2822s Sequence loading took: 0.047 seconds 2822s Forward frequencies: A:28.5018% C:21.6809% G:23.1425% T:26.6748% 2822s Global base frequencies: A/T:55.1766% C/G:44.8234% 2822s Pat: 3 bases long with weight 2 2822s 1 101 2822s Computing hash parameters... 2822s Using 4 hashbits 2822s 0%......... (T -4.578 seconds) ETA: Fri Mar 15 09:09:38 2024 2822s 10%......... (T -2.918 seconds) ETA: Fri Mar 15 09:09:36 2024 2823s 20%......... (T -2.221 seconds) ETA: Fri Mar 15 09:09:36 2024 2823s 30%......... (T -2.200 seconds) ETA: Fri Mar 15 09:09:36 2024 2823s 40%......... (T -1.813 seconds) ETA: Fri Mar 15 09:09:36 2024 2824s 50%......... (T -1.502 seconds) ETA: Fri Mar 15 09:09:36 2024 2824s 60%......... (T -1.062 seconds) ETA: Fri Mar 15 09:09:36 2024 2824s 70%......... (T -0.702 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 80%......... (T -0.306 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 91%........ 2825s Acceptable hash function found after 1000 cycles. 2825s Best uses 2/2 bases and has 0 empties from 2 inputs. 2825s Score: 0.96875 (cf. worst: -4.51562) 2825s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2825s Total correlation penalty: 0 2825s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2825s 10 2825s == 2825s w[ 0]>>29: -.C 2825s w[ 0]>>30: A.- 2825s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2825s Ecolist (optimistic): Expcted entries per list: 8 2825s Ecolist (optimistic): Minimum chunks per list: 4 2825s Would take minimum 256.000000 bytes to make perfect hash. 2825s Hashing 3.21 KB of sequence requires: 2825s ~ linear (in seq length) hashing cost of 5.21 KB 2825s ~ linear (in seq length) expected anchor cost of 76.97 KB 2825s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2825s Expected memory usage (without anchors): 5.46 KB 2825s Expected memory usage (with anchors): 82.42 KB 2825s Hash parameters computed in 3.674 seconds 2825s Creating storage structures: 16 entries in 256 bytes space. 2825s Storage structures created in: 0.009 seconds 2825s 2825s Hashing NZ_GG705104.fna forwards 2825s 0%......... (T -0.096 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 10%......... (T -0.062 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 20%......... (T -0.037 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 30%......... (T -0.025 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 81%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 91%....... 2825s Hashing NZ_GG705104.fna backwards 2825s 0%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 10%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 20%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 60%......... (T -0.001 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 70%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 81%......... (T -0.001 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 91%....... 2825s Hashing NZ_GG705104.gbk forwards 2825s 0%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 10%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 20%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 40%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 50%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 81%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 91%....... 2825s Hashing NZ_GG705104.gbk backwards 2825s 0%......... (T -0.045 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 10%......... (T -0.022 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 20%......... (T -0.014 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 30%......... (T -0.009 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 40%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 50%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 60%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 81%......... (T -0.001 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 91%....... 2825s Initial hashing took: 0.094 seconds 2825s Extracting anchors from hash-space. 2825s (T -0.060 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 6%. (T -0.047 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 18%. (T -0.041 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 31%. (T -0.036 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 43%. (T -0.027 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 56%. (T -0.020 seconds) ETA: Fri Mar 15 09:09:36 2024 2825s 68%. (T -0.013 seconds) ETA: Fri Mar 15 09:09:36 2024 2826s 81%. (T -0.005 seconds) ETA: Fri Mar 15 09:09:36 2024 2826s 93%. 2826s Anchor extraction completed in: 0.072 seconds 2826s Total anchors: 0 2826s Anchor extraction + merge time: 0.072 seconds 2826s Total processing time: 3.905 seconds 2826s Writing anchors... 2826s Total seeds used in anchors: 16 2826s Hash performance: 2826s Keys used: 16 out of 16 possible (100.00%). 2826s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2826s Average pigeons per pigeon hole: 1 2826s Writing 16 repeats...Output writing finished in: 0.046 seconds 2826s Total time: 3.951 seconds 2826s Murasaki finished! 2826s PASSED MURASAKI 2826s 2826s Testing Genepare on NZ_GG705104.fna 2826s 18446744073709551438 2826s PASSED GENEPARSE 2826s 2827s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2827s Testing mbfa on NZ_GG705104.fna 2827s PASSED mbfa 2827s 2827s Test Murasaki on NZ_GG705105.fna 2827s Verbosity level is: 0 2827s Writing to: output/test 2827s Pattern is: 101 2827s Max usable hash bits: 27 2827s Hit filter is: 0 2827s Hash table type is: EcoHash 2827s Hashing every: 1 base 2827s Histogram detail is: 0 2827s Hashing function is: 3 2827s Collision profiling is: disabled 2827s Repeats are: unmasked 2827s Mergefilter is at: 100 2827s Random seed: 1710493778 (automatic) 2827s Bitscore output: on 2827s Leave status records: no 2827s Join neighbors is: off 2827s Target memory is: 1.28 GB 2827s Retain members is: true 2827s Store repeatmap? yes 2827s Reverse complement data is generated on the fly 2827s Rifts allowed: 0 2827s Fuzzy Extension: yes 2827s Score by minimum pair: yes 2827s Gapped anchors: no 2827s Large sequence support is: enabled => seqpos is 8 bytes 2827s Murasaki version 1.68.6 (LARGESEQ) 2827s Loading NZ_GG705105.fna 2827s Read 802bp (802 bytesp) in 0.009 seconds (82.9 KBp/s) 2827s Done with forward strand (802bp). Preparing reverse complement... 2827s <-> Reversing metdata. 2827s Done. 2827s Seq NZ_GG705105.fna loaded. 802 bytes 2827s Loading NZ_GG705105.gbk 2827s Read 802bp (802 bytesp) in 0.017 seconds (45.0 KBp/s) 2827s Done with forward strand (802bp). Preparing reverse complement... 2827s <-> Reversing metdata. 2827s Done. 2827s Seq NZ_GG705105.gbk loaded. 802 bytes 2827s Sequence loading took: 0.037 seconds 2827s Forward frequencies: A:33.9152% C:17.7057% G:18.2045% T:30.1746% 2827s Global base frequencies: A/T:64.0898% C/G:35.9102% 2827s Pat: 3 bases long with weight 2 2827s 1 101 2827s Computing hash parameters... 2827s Using 4 hashbits 2827s 0%......... (T -2.312 seconds) ETA: Fri Mar 15 09:09:40 2024 2827s 10%......... (T -2.303 seconds) ETA: Fri Mar 15 09:09:41 2024 2828s 20%......... (T -1.900 seconds) ETA: Fri Mar 15 09:09:40 2024 2828s 30%......... (T -2.169 seconds) ETA: Fri Mar 15 09:09:41 2024 2829s 40%......... (T -2.053 seconds) ETA: Fri Mar 15 09:09:42 2024 2830s 50%......... (T -1.866 seconds) ETA: Fri Mar 15 09:09:42 2024 2830s 60%......... (T -1.437 seconds) ETA: Fri Mar 15 09:09:43 2024 2831s 70%......... (T -0.938 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 80%......... (T -0.401 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 91%........ 2831s Acceptable hash function found after 1000 cycles. 2831s Best uses 2/2 bases and has 0 empties from 2 inputs. 2831s Score: 0.96875 (cf. worst: -4.51562) 2831s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2831s Total correlation penalty: 0 2831s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2831s 10 2831s == 2831s w[ 0]>>29: -.C 2831s w[ 0]>>30: A.- 2831s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2831s Ecolist (optimistic): Expcted entries per list: 8 2831s Ecolist (optimistic): Minimum chunks per list: 4 2831s Would take minimum 256.000000 bytes to make perfect hash. 2831s Hashing 3.13 KB of sequence requires: 2831s ~ linear (in seq length) hashing cost of 5.09 KB 2831s ~ linear (in seq length) expected anchor cost of 75.19 KB 2831s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2831s Expected memory usage (without anchors): 5.34 KB 2831s Expected memory usage (with anchors): 80.53 KB 2831s Hash parameters computed in 4.591 seconds 2831s Creating storage structures: 16 entries in 256 bytes space. 2831s Storage structures created in: 0.003 seconds 2831s 2831s Hashing NZ_GG705105.fna forwards 2831s 0%........ (T -0.403 seconds) ETA: Fri Mar 15 09:09:43 2024 2831s 10%........ (T -0.181 seconds) ETA: Fri Mar 15 09:09:43 2024 2831s 20%........ (T -0.106 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 30%........ (T -0.069 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 40%........ (T -0.046 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 50%........ (T -0.031 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 60%........ (T -0.020 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 70%........ (T -0.011 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 81%........ (T -0.005 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 91%....... 2831s Hashing NZ_GG705105.fna backwards 2831s 0%........ (T -0.005 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 10%........ (T -0.004 seconds) ETA: Fri Mar 15 09:09:42 2024 2831s 20%........ (T -0.102 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 30%........ (T -0.130 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 40%........ (T -0.087 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 50%........ (T -0.058 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 60%........ (T -0.038 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 70%........ (T -0.022 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 81%........ (T -0.009 seconds) ETA: Fri Mar 15 09:09:42 2024 2832s 91%....... 2832s Hashing NZ_GG705105.gbk forwards 2832s 0%........ (T -0.004 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 10%........ (T -0.003 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 20%........ (T -0.003 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 30%........ (T -0.004 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 40%........ (T -0.014 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 50%........ (T -0.009 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 60%........ (T -0.006 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 70%........ (T -0.004 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 81%........ (T -0.002 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 91%....... 2832s Hashing NZ_GG705105.gbk backwards 2832s 0%........ (T -0.056 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 10%........ (T -0.034 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 20%........ (T -0.021 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 30%........ (T -0.014 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 40%........ (T -0.010 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 50%........ (T -0.007 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 60%........ (T -0.004 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 70%........ (T -0.004 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 81%........ (T -0.002 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 91%....... 2832s Initial hashing took: 0.244 seconds 2832s Extracting anchors from hash-space. 2832s (T -0.073 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 6%. (T -0.053 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 18%. (T -0.040 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 31%. (T -0.032 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 43%. (T -0.023 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 56%. (T -0.017 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 68%. (T -0.011 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 81%. (T -0.004 seconds) ETA: Fri Mar 15 09:09:43 2024 2832s 93%. 2832s Anchor extraction completed in: 0.058 seconds 2832s Total anchors: 0 2832s Anchor extraction + merge time: 0.058 seconds 2832s Total processing time: 4.941 seconds 2832s Writing anchors... 2832s Total seeds used in anchors: 16 2832s Hash performance: 2832s Keys used: 16 out of 16 possible (100.00%). 2832s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2832s Average pigeons per pigeon hole: 1 2832s Writing 16 repeats...Output writing finished in: 0.036 seconds 2832s Total time: 4.977 seconds 2832s Murasaki finished! 2832s PASSED MURASAKI 2832s 2832s Testing Genepare on NZ_GG705105.fna 2832s 18446744073709551419 2832s PASSED GENEPARSE 2832s 2833s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2833s Testing mbfa on NZ_GG705105.fna 2833s PASSED mbfa 2833s 2833s Test Murasaki on NZ_GG705106.fna 2833s Verbosity level is: 0 2833s Writing to: output/test 2833s Pattern is: 101 2833s Max usable hash bits: 27 2833s Hit filter is: 0 2833s Hash table type is: EcoHash 2833s Hashing every: 1 base 2833s Histogram detail is: 0 2833s Hashing function is: 3 2833s Collision profiling is: disabled 2833s Repeats are: unmasked 2833s Mergefilter is at: 100 2833s Random seed: 1710493784 (automatic) 2833s Bitscore output: on 2833s Leave status records: no 2833s Join neighbors is: off 2833s Target memory is: 1.28 GB 2833s Retain members is: true 2833s Store repeatmap? yes 2833s Reverse complement data is generated on the fly 2833s Rifts allowed: 0 2833s Fuzzy Extension: yes 2833s Score by minimum pair: yes 2833s Gapped anchors: no 2833s Large sequence support is: enabled => seqpos is 8 bytes 2833s Murasaki version 1.68.6 (LARGESEQ) 2833s Loading NZ_GG705106.fna 2833s Read 800bp (800 bytesp) in 0.008 seconds (94.0 KBp/s) 2833s Done with forward strand (800bp). Preparing reverse complement... 2833s <-> Reversing metdata. 2833s Done. 2833s Seq NZ_GG705106.fna loaded. 800 bytes 2833s Loading NZ_GG705106.gbk 2833s Read 800bp (800 bytesp) in 0.025 seconds (31.1 KBp/s) 2833s Done with forward strand (800bp). Preparing reverse complement... 2833s <-> Reversing metdata. 2833s Done. 2833s Seq NZ_GG705106.gbk loaded. 800 bytes 2833s Sequence loading took: 0.048 seconds 2833s Forward frequencies: A:28.875% C:18% G:21.625% T:31.5% 2833s Global base frequencies: A/T:60.375% C/G:39.625% 2833s Pat: 3 bases long with weight 2 2833s 1 101 2833s Computing hash parameters... 2833s Using 4 hashbits 2834s 0%......... (T -3.407 seconds) ETA: Fri Mar 15 09:09:48 2024 2834s 10%......... (T -3.774 seconds) ETA: Fri Mar 15 09:09:49 2024 2835s 20%......... (T -2.833 seconds) ETA: Fri Mar 15 09:09:48 2024 2835s 30%......... (T -2.421 seconds) ETA: Fri Mar 15 09:09:48 2024 2835s 40%......... (T -2.091 seconds) ETA: Fri Mar 15 09:09:49 2024 2836s 50%......... (T -1.971 seconds) ETA: Fri Mar 15 09:09:49 2024 2837s 60%......... (T -1.527 seconds) ETA: Fri Mar 15 09:09:49 2024 2837s 70%......... (T -1.006 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 80%......... (T -0.431 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 91%........ 2838s Acceptable hash function found after 1000 cycles. 2838s Best uses 2/2 bases and has 0 empties from 2 inputs. 2838s Score: 0.96875 (cf. worst: -4.51562) 2838s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2838s Total correlation penalty: 0 2838s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2838s 10 2838s == 2838s w[ 0]>>29: -.C 2838s w[ 0]>>30: A.- 2838s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2838s Ecolist (optimistic): Expcted entries per list: 8 2838s Ecolist (optimistic): Minimum chunks per list: 4 2838s Would take minimum 256.000000 bytes to make perfect hash. 2838s Hashing 3.12 KB of sequence requires: 2838s ~ linear (in seq length) hashing cost of 5.08 KB 2838s ~ linear (in seq length) expected anchor cost of 75.00 KB 2838s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2838s Expected memory usage (without anchors): 5.33 KB 2838s Expected memory usage (with anchors): 80.33 KB 2838s Hash parameters computed in 4.809 seconds 2838s Creating storage structures: 16 entries in 256 bytes space. 2838s Storage structures created in: 0.021 seconds 2838s 2838s Hashing NZ_GG705106.fna forwards 2838s 0%......... (T -0.195 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 10%......... (T -0.089 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 20%......... (T -0.053 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 30%......... (T -0.035 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 40%......... (T -0.024 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 50%......... (T -0.016 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 90%......... 2838s Hashing NZ_GG705106.fna backwards 2838s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 10%......... (T -0.029 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 20%......... (T -0.058 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 30%......... (T -0.039 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 40%......... (T -0.026 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 50%......... (T -0.018 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 60%......... (T -0.012 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 90%......... 2838s Hashing NZ_GG705106.gbk forwards 2838s 0%......... (T -0.338 seconds) ETA: Fri Mar 15 09:09:50 2024 2838s 10%......... (T -0.153 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 20%......... (T -0.090 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 30%......... (T -0.059 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 40%......... (T -0.040 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 50%......... (T -0.027 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 60%......... (T -0.017 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 70%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 90%......... 2838s Hashing NZ_GG705106.gbk backwards 2838s 0%......... (T -0.283 seconds) ETA: Fri Mar 15 09:09:50 2024 2838s 10%......... (T -0.128 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 20%......... (T -0.193 seconds) ETA: Fri Mar 15 09:09:50 2024 2838s 30%......... (T -0.125 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 40%......... (T -0.084 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 50%......... (T -0.081 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 60%......... (T -0.052 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 70%......... (T -0.030 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 80%......... (T -0.014 seconds) ETA: Fri Mar 15 09:09:49 2024 2838s 90%......... 2838s Initial hashing took: 0.272 seconds 2838s Extracting anchors from hash-space. 2838s (T -0.192 seconds) ETA: Fri Mar 15 09:09:50 2024 2838s 6%. (T -0.163 seconds) ETA: Fri Mar 15 09:09:50 2024 2839s 18%. (T -0.143 seconds) ETA: Fri Mar 15 09:09:50 2024 2839s 31%. (T -0.116 seconds) ETA: Fri Mar 15 09:09:50 2024 2839s 43%. (T -0.105 seconds) ETA: Fri Mar 15 09:09:50 2024 2839s 56%. (T -0.079 seconds) ETA: Fri Mar 15 09:09:50 2024 2839s 68%. (T -0.040 seconds) ETA: Fri Mar 15 09:09:50 2024 2839s 81%. (T -0.015 seconds) ETA: Fri Mar 15 09:09:50 2024 2839s 93%. 2839s Anchor extraction completed in: 0.222 seconds 2839s Total anchors: 0 2839s Anchor extraction + merge time: 0.222 seconds 2839s Total processing time: 5.374 seconds 2839s Writing anchors... 2839s Total seeds used in anchors: 16 2839s Hash performance: 2839s Keys used: 16 out of 16 possible (100.00%). 2839s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2839s Average pigeons per pigeon hole: 1 2839s Writing 16 repeats...Output writing finished in: 0.126 seconds 2839s Total time: 5.500 seconds 2839s Murasaki finished! 2839s PASSED MURASAKI 2839s 2839s Testing Genepare on NZ_GG705106.fna 2839s 18446744073709551417 2839s PASSED GENEPARSE 2839s 2841s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2841s Testing mbfa on NZ_GG705106.fna 2841s PASSED mbfa 2841s 2841s Test Murasaki on NZ_GG705107.fna 2842s Verbosity level is: 0 2842s Writing to: output/test 2842s Pattern is: 101 2842s Max usable hash bits: 27 2842s Hit filter is: 0 2842s Hash table type is: EcoHash 2842s Hashing every: 1 base 2842s Histogram detail is: 0 2842s Hashing function is: 3 2842s Collision profiling is: disabled 2842s Repeats are: unmasked 2842s Mergefilter is at: 100 2842s Random seed: 1710493793 (automatic) 2842s Bitscore output: on 2842s Leave status records: no 2842s Join neighbors is: off 2842s Target memory is: 1.28 GB 2842s Retain members is: true 2842s Store repeatmap? yes 2842s Reverse complement data is generated on the fly 2842s Rifts allowed: 0 2842s Fuzzy Extension: yes 2842s Score by minimum pair: yes 2842s Gapped anchors: no 2842s Large sequence support is: enabled => seqpos is 8 bytes 2842s Murasaki version 1.68.6 (LARGESEQ) 2842s Loading NZ_GG705107.fna 2842s Read 793bp (793 bytesp) in 0.010 seconds (79.9 KBp/s) 2842s Done with forward strand (793bp). Preparing reverse complement... 2842s <-> Reversing metdata. 2842s Done. 2842s Seq NZ_GG705107.fna loaded. 793 bytes 2842s Loading NZ_GG705107.gbk 2842s Read 793bp (793 bytesp) in 0.007 seconds (115.6 KBp/s) 2842s Done with forward strand (793bp). Preparing reverse complement... 2842s <-> Reversing metdata. 2842s Done. 2842s Seq NZ_GG705107.gbk loaded. 793 bytes 2842s Sequence loading took: 0.025 seconds 2842s Forward frequencies: A:29.5082% C:14.3758% G:19.4199% T:36.6961% 2842s Global base frequencies: A/T:66.2043% C/G:33.7957% 2842s Pat: 3 bases long with weight 2 2842s 1 101 2842s Computing hash parameters... 2842s Using 4 hashbits 2842s 0%......... (T -5.045 seconds) ETA: Fri Mar 15 09:09:58 2024 2843s 10%......... (T -5.314 seconds) ETA: Fri Mar 15 09:09:59 2024 2844s 20%......... (T -5.385 seconds) ETA: Fri Mar 15 09:10:00 2024 2845s 30%......... (T -4.723 seconds) ETA: Fri Mar 15 09:10:01 2024 2846s 40%......... (T -3.861 seconds) ETA: Fri Mar 15 09:10:00 2024 2846s 50%......... (T -2.924 seconds) ETA: Fri Mar 15 09:10:00 2024 2847s 60%......... (T -2.130 seconds) ETA: Fri Mar 15 09:10:00 2024 2847s 70%......... (T -1.372 seconds) ETA: Fri Mar 15 09:10:00 2024 2848s 80%......... (T -0.599 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 91%........ 2848s Acceptable hash function found after 1000 cycles. 2848s Best uses 2/2 bases and has 0 empties from 2 inputs. 2848s Score: 0.96875 (cf. worst: -4.51562) 2848s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2848s Total correlation penalty: 0 2848s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2848s 10 2848s == 2848s w[ 0]>>29: -.C 2848s w[ 0]>>30: A.- 2848s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2848s Ecolist (optimistic): Expcted entries per list: 8 2848s Ecolist (optimistic): Minimum chunks per list: 4 2848s Would take minimum 256.000000 bytes to make perfect hash. 2848s Hashing 3.10 KB of sequence requires: 2848s ~ linear (in seq length) hashing cost of 5.03 KB 2848s ~ linear (in seq length) expected anchor cost of 74.34 KB 2848s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2848s Expected memory usage (without anchors): 5.28 KB 2848s Expected memory usage (with anchors): 79.62 KB 2848s Hash parameters computed in 6.758 seconds 2848s Creating storage structures: 16 entries in 256 bytes space. 2848s Storage structures created in: 0.004 seconds 2848s 2848s Hashing NZ_GG705107.fna forwards 2848s 0%......... (T -0.009 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 10%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 20%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 30%......... (T -0.057 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 40%......... (T -0.038 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 50%......... (T -0.042 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 60%......... (T -0.027 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 70%......... (T -0.016 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 91%........ 2848s Hashing NZ_GG705107.fna backwards 2848s 0%......... (T -0.031 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 10%......... (T -0.016 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 20%......... (T -0.010 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 30%......... (T -0.007 seconds) ETA: Fri Mar 15 09:09:59 2024 2848s 40%......... (T -0.005 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 50%......... (T -0.020 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 60%......... (T -0.013 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 91%........ 2849s Hashing NZ_GG705107.gbk forwards 2849s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 30%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:09:59 2024 2849s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 70%......... (T -0.013 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 91%........ 2849s Hashing NZ_GG705107.gbk backwards 2849s 0%......... (T -0.137 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 10%......... (T -0.063 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 20%......... (T -0.038 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 30%......... (T -0.026 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 40%......... (T -0.018 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 91%........ 2849s Initial hashing took: 0.216 seconds 2849s Extracting anchors from hash-space. 2849s (T -0.020 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 6%. (T -0.154 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 18%. (T -0.107 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 31%. (T -0.088 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 43%. (T -0.055 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 56%. (T -0.051 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 68%. (T -0.028 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 81%. (T -0.011 seconds) ETA: Fri Mar 15 09:10:00 2024 2849s 93%. 2849s Anchor extraction completed in: 0.148 seconds 2849s Total anchors: 0 2849s Anchor extraction + merge time: 0.148 seconds 2849s Total processing time: 7.158 seconds 2849s Writing anchors... 2849s Total seeds used in anchors: 16 2849s Hash performance: 2849s Keys used: 16 out of 16 possible (100.00%). 2849s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2849s Average pigeons per pigeon hole: 1 2849s Writing 16 repeats...Output writing finished in: 0.102 seconds 2849s Total time: 7.260 seconds 2849s Murasaki finished! 2849s PASSED MURASAKI 2849s 2849s Testing Genepare on NZ_GG705107.fna 2849s 18446744073709551410 2849s PASSED GENEPARSE 2849s 2851s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2851s Testing mbfa on NZ_GG705107.fna 2852s PASSED mbfa 2852s 2852s Test Murasaki on NZ_GG705108.fna 2852s Verbosity level is: 0 2852s Writing to: output/test 2852s Pattern is: 101 2852s Max usable hash bits: 27 2852s Hit filter is: 0 2852s Hash table type is: EcoHash 2852s Hashing every: 1 base 2852s Histogram detail is: 0 2852s Hashing function is: 3 2852s Collision profiling is: disabled 2852s Repeats are: unmasked 2852s Mergefilter is at: 100 2852s Random seed: 1710493803 (automatic) 2852s Bitscore output: on 2852s Leave status records: no 2852s Join neighbors is: off 2852s Target memory is: 1.28 GB 2852s Retain members is: true 2852s Store repeatmap? yes 2852s Reverse complement data is generated on the fly 2852s Rifts allowed: 0 2852s Fuzzy Extension: yes 2852s Score by minimum pair: yes 2852s Gapped anchors: no 2852s Large sequence support is: enabled => seqpos is 8 bytes 2852s Murasaki version 1.68.6 (LARGESEQ) 2852s Loading NZ_GG705108.fna 2852s Read 792bp (792 bytesp) in 0.008 seconds (97.3 KBp/s) 2852s Done with forward strand (792bp). Preparing reverse complement... 2852s <-> Reversing metdata. 2852s Done. 2852s Seq NZ_GG705108.fna loaded. 792 bytes 2852s Loading NZ_GG705108.gbk 2852s Read 792bp (792 bytesp) in 0.112 seconds (6.9 KBp/s) 2852s Done with forward strand (792bp). Preparing reverse complement... 2852s <-> Reversing metdata. 2852s Done. 2852s Seq NZ_GG705108.gbk loaded. 792 bytes 2852s Sequence loading took: 0.140 seconds 2852s Forward frequencies: A:34.9747% C:15.6566% G:20.8333% T:28.5354% 2852s Global base frequencies: A/T:63.5101% C/G:36.4899% 2852s Pat: 3 bases long with weight 2 2852s 1 101 2852s Computing hash parameters... 2852s Using 4 hashbits 2853s 0%......... (T -8.027 seconds) ETA: Fri Mar 15 09:10:12 2024 2853s 10%......... (T -6.352 seconds) ETA: Fri Mar 15 09:10:11 2024 2854s 20%......... (T -4.675 seconds) ETA: Fri Mar 15 09:10:09 2024 2854s 30%......... (T -3.586 seconds) ETA: Fri Mar 15 09:10:09 2024 2854s 40%......... (T -2.696 seconds) ETA: Fri Mar 15 09:10:08 2024 2855s 50%......... (T -2.208 seconds) ETA: Fri Mar 15 09:10:08 2024 2855s 60%......... (T -1.588 seconds) ETA: Fri Mar 15 09:10:08 2024 2857s 70%......... (T -1.198 seconds) ETA: Fri Mar 15 09:10:09 2024 2857s 80%......... (T -0.526 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 91%........ 2858s Acceptable hash function found after 1000 cycles. 2858s Best uses 2/2 bases and has 0 empties from 2 inputs. 2858s Score: 0.96875 (cf. worst: -4.51562) 2858s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2858s Total correlation penalty: 0 2858s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2858s 10 2858s == 2858s w[ 0]>>29: -.C 2858s w[ 0]>>30: A.- 2858s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2858s Ecolist (optimistic): Expcted entries per list: 8 2858s Ecolist (optimistic): Minimum chunks per list: 4 2858s Would take minimum 256.000000 bytes to make perfect hash. 2858s Hashing 3.09 KB of sequence requires: 2858s ~ linear (in seq length) hashing cost of 5.03 KB 2858s ~ linear (in seq length) expected anchor cost of 74.25 KB 2858s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2858s Expected memory usage (without anchors): 5.28 KB 2858s Expected memory usage (with anchors): 79.53 KB 2858s Hash parameters computed in 5.928 seconds 2858s Creating storage structures: 16 entries in 256 bytes space. 2858s Storage structures created in: 0.021 seconds 2858s 2858s Hashing NZ_GG705108.fna forwards 2858s 0%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 10%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 40%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 60%......... (T -0.001 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 81%......... (T -0.000 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 91%........ 2858s Hashing NZ_GG705108.fna backwards 2858s 0%......... (T -0.105 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 10%......... (T -0.049 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 20%......... (T -0.029 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 30%......... (T -0.019 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 40%......... (T -0.013 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 50%......... (T -0.009 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 60%......... (T -0.012 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 81%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 91%........ 2858s Hashing NZ_GG705108.gbk forwards 2858s 0%......... (T -0.011 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 10%......... (T -0.007 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 20%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 60%......... (T -0.009 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 81%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 91%........ 2858s Hashing NZ_GG705108.gbk backwards 2858s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 10%......... (T -0.007 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 20%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 81%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 91%........ 2858s Initial hashing took: 0.121 seconds 2858s Extracting anchors from hash-space. 2858s (T -0.021 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 6%. (T -0.103 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 18%. (T -0.061 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 31%. (T -0.058 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 43%. (T -0.065 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 56%. (T -0.042 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 68%. (T -0.028 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 81%. (T -0.009 seconds) ETA: Fri Mar 15 09:10:09 2024 2858s 93%. 2858s Anchor extraction completed in: 0.138 seconds 2858s Total anchors: 0 2858s Anchor extraction + merge time: 0.139 seconds 2858s Total processing time: 6.353 seconds 2858s Writing anchors... 2858s Total seeds used in anchors: 16 2858s Hash performance: 2858s Keys used: 16 out of 16 possible (100.00%). 2858s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2858s Average pigeons per pigeon hole: 1 2858s Writing 16 repeats...Output writing finished in: 0.123 seconds 2858s Total time: 6.477 seconds 2858s Murasaki finished! 2858s PASSED MURASAKI 2858s 2858s Testing Genepare on NZ_GG705108.fna 2858s 18446744073709551409 2858s PASSED GENEPARSE 2858s 2860s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2861s Testing mbfa on NZ_GG705108.fna 2861s PASSED mbfa 2861s 2861s Test Murasaki on NZ_GG705109.fna 2861s Verbosity level is: 0 2861s Writing to: output/test 2861s Pattern is: 101 2861s Max usable hash bits: 27 2861s Hit filter is: 0 2861s Hash table type is: EcoHash 2861s Hashing every: 1 base 2861s Histogram detail is: 0 2861s Hashing function is: 3 2861s Collision profiling is: disabled 2861s Repeats are: unmasked 2861s Mergefilter is at: 100 2861s Random seed: 1710493812 (automatic) 2861s Bitscore output: on 2861s Leave status records: no 2861s Join neighbors is: off 2861s Target memory is: 1.28 GB 2861s Retain members is: true 2861s Store repeatmap? yes 2861s Reverse complement data is generated on the fly 2861s Rifts allowed: 0 2861s Fuzzy Extension: yes 2861s Score by minimum pair: yes 2861s Gapped anchors: no 2861s Large sequence support is: enabled => seqpos is 8 bytes 2861s Murasaki version 1.68.6 (LARGESEQ) 2861s Loading NZ_GG705109.fna 2861s Read 790bp (790 bytesp) in 0.036 seconds (21.2 KBp/s) 2861s Done with forward strand (790bp). Preparing reverse complement... 2861s <-> Reversing metdata. 2861s Done. 2861s Seq NZ_GG705109.fna loaded. 790 bytes 2861s Loading NZ_GG705109.gbk 2861s Read 790bp (790 bytesp) in 0.028 seconds (27.8 KBp/s) 2861s Done with forward strand (790bp). Preparing reverse complement... 2861s <-> Reversing metdata. 2861s Done. 2861s Seq NZ_GG705109.gbk loaded. 790 bytes 2861s Sequence loading took: 0.109 seconds 2861s Forward frequencies: A:27.5949% C:25.0633% G:23.038% T:24.3038% 2861s Global base frequencies: A/T:51.8987% C/G:48.1013% 2861s Pat: 3 bases long with weight 2 2861s 1 101 2861s Computing hash parameters... 2861s Using 4 hashbits 2862s 0%......... (T -8.305 seconds) ETA: Fri Mar 15 09:10:22 2024 2863s 10%......... (T -5.872 seconds) ETA: Fri Mar 15 09:10:20 2024 2863s 20%......... (T -4.468 seconds) ETA: Fri Mar 15 09:10:19 2024 2864s 30%......... (T -3.221 seconds) ETA: Fri Mar 15 09:10:18 2024 2864s 40%......... (T -2.446 seconds) ETA: Fri Mar 15 09:10:17 2024 2864s 50%......... (T -1.885 seconds) ETA: Fri Mar 15 09:10:17 2024 2865s 60%......... (T -1.441 seconds) ETA: Fri Mar 15 09:10:17 2024 2865s 70%......... (T -1.004 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 80%......... (T -0.455 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 91%........ 2866s Acceptable hash function found after 1000 cycles. 2866s Best uses 2/2 bases and has 0 empties from 2 inputs. 2866s Score: 0.96875 (cf. worst: -4.51562) 2866s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2866s Total correlation penalty: 0 2866s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2866s 10 2866s == 2866s w[ 0]>>29: -.C 2866s w[ 0]>>30: A.- 2866s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2866s Ecolist (optimistic): Expcted entries per list: 8 2866s Ecolist (optimistic): Minimum chunks per list: 4 2866s Would take minimum 256.000000 bytes to make perfect hash. 2866s Hashing 3.09 KB of sequence requires: 2866s ~ linear (in seq length) hashing cost of 5.01 KB 2866s ~ linear (in seq length) expected anchor cost of 74.06 KB 2866s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2866s Expected memory usage (without anchors): 5.26 KB 2866s Expected memory usage (with anchors): 79.33 KB 2866s Hash parameters computed in 5.177 seconds 2866s Creating storage structures: 16 entries in 256 bytes space. 2866s Storage structures created in: 0.008 seconds 2866s 2866s Hashing NZ_GG705109.fna forwards 2866s 0%......... (T -0.010 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 10%......... (T -0.006 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 20%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 80%......... (T -0.000 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 90%......... 2866s Hashing NZ_GG705109.fna backwards 2866s 0%......... (T -0.080 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 10%......... (T -0.041 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 20%......... (T -0.025 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 30%......... (T -0.017 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 40%......... (T -0.011 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 50%......... (T -0.008 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 90%......... 2866s Hashing NZ_GG705109.gbk forwards 2866s 0%......... (T -0.035 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 10%......... (T -0.017 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 20%......... (T -0.011 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 30%......... (T -0.008 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 40%......... (T -0.006 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 60%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 70%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 90%......... 2866s Hashing NZ_GG705109.gbk backwards 2866s 0%......... (T -0.031 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 10%......... (T -0.016 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 20%......... (T -0.010 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 30%......... (T -0.007 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 40%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 90%......... 2866s Initial hashing took: 0.083 seconds 2866s Extracting anchors from hash-space. 2866s (T -0.068 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 6%. (T -0.053 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 18%. (T -0.042 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 31%. (T -0.034 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 43%. (T -0.026 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 56%. (T -0.020 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 68%. (T -0.011 seconds) ETA: Fri Mar 15 09:10:17 2024 2866s 81%. (T -0.004 seconds) ETA: Fri Mar 15 09:10:17 2024 2867s 93%. 2867s Anchor extraction completed in: 0.063 seconds 2867s Total anchors: 0 2867s Anchor extraction + merge time: 0.063 seconds 2867s Total processing time: 5.478 seconds 2867s Writing anchors... 2867s Total seeds used in anchors: 16 2867s Hash performance: 2867s Keys used: 16 out of 16 possible (100.00%). 2867s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2867s Average pigeons per pigeon hole: 1 2867s Writing 16 repeats...Output writing finished in: 0.032 seconds 2867s Total time: 5.510 seconds 2867s Murasaki finished! 2867s PASSED MURASAKI 2867s 2867s Testing Genepare on NZ_GG705109.fna 2867s 18446744073709551407 2867s PASSED GENEPARSE 2867s 2868s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2868s Testing mbfa on NZ_GG705109.fna 2868s PASSED mbfa 2868s 2868s Test Murasaki on NZ_GG705110.fna 2868s Verbosity level is: 0 2868s Writing to: output/test 2868s Pattern is: 101 2868s Max usable hash bits: 27 2868s Hit filter is: 0 2868s Hash table type is: EcoHash 2868s Hashing every: 1 base 2868s Histogram detail is: 0 2868s Hashing function is: 3 2868s Collision profiling is: disabled 2868s Repeats are: unmasked 2868s Mergefilter is at: 100 2868s Random seed: 1710493819 (automatic) 2868s Bitscore output: on 2868s Leave status records: no 2868s Join neighbors is: off 2868s Target memory is: 1.28 GB 2868s Retain members is: true 2868s Store repeatmap? yes 2868s Reverse complement data is generated on the fly 2868s Rifts allowed: 0 2868s Fuzzy Extension: yes 2868s Score by minimum pair: yes 2868s Gapped anchors: no 2868s Large sequence support is: enabled => seqpos is 8 bytes 2868s Murasaki version 1.68.6 (LARGESEQ) 2868s Loading NZ_GG705110.fna 2868s Read 789bp (789 bytesp) in 0.010 seconds (74.0 KBp/s) 2868s Done with forward strand (789bp). Preparing reverse complement... 2868s <-> Reversing metdata. 2868s Done. 2868s Seq NZ_GG705110.fna loaded. 789 bytes 2868s Loading NZ_GG705110.gbk 2868s Read 789bp (789 bytesp) in 0.008 seconds (96.9 KBp/s) 2868s Done with forward strand (789bp). Preparing reverse complement... 2868s <-> Reversing metdata. 2868s Done. 2868s Seq NZ_GG705110.gbk loaded. 789 bytes 2868s Sequence loading took: 0.037 seconds 2868s Forward frequencies: A:28.6439% C:19.5184% G:16.0963% T:35.7414% 2868s Global base frequencies: A/T:64.3853% C/G:35.6147% 2868s Pat: 3 bases long with weight 2 2868s 1 101 2868s Computing hash parameters... 2868s Using 4 hashbits 2869s 0%......... (T -2.879 seconds) ETA: Fri Mar 15 09:10:22 2024 2869s 10%......... (T -3.171 seconds) ETA: Fri Mar 15 09:10:23 2024 2869s 20%......... (T -2.582 seconds) ETA: Fri Mar 15 09:10:23 2024 2870s 30%......... (T -2.517 seconds) ETA: Fri Mar 15 09:10:23 2024 2871s 40%......... (T -2.347 seconds) ETA: Fri Mar 15 09:10:24 2024 2871s 50%......... (T -2.004 seconds) ETA: Fri Mar 15 09:10:24 2024 2872s 60%......... (T -1.582 seconds) ETA: Fri Mar 15 09:10:24 2024 2873s 70%......... (T -1.166 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 80%......... (T -0.540 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 91%........ 2874s Acceptable hash function found after 1000 cycles. 2874s Best uses 2/2 bases and has 0 empties from 2 inputs. 2874s Score: 0.96875 (cf. worst: -4.51562) 2874s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2874s Total correlation penalty: 0 2874s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2874s 10 2874s == 2874s w[ 0]>>29: -.C 2874s w[ 0]>>30: A.- 2874s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2874s Ecolist (optimistic): Expcted entries per list: 8 2874s Ecolist (optimistic): Minimum chunks per list: 4 2874s Would take minimum 256.000000 bytes to make perfect hash. 2874s Hashing 3.08 KB of sequence requires: 2874s ~ linear (in seq length) hashing cost of 5.00 KB 2874s ~ linear (in seq length) expected anchor cost of 73.97 KB 2874s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2874s Expected memory usage (without anchors): 5.25 KB 2874s Expected memory usage (with anchors): 79.22 KB 2874s Hash parameters computed in 6.171 seconds 2874s Creating storage structures: 16 entries in 256 bytes space. 2874s Storage structures created in: 0.024 seconds 2874s 2874s Hashing NZ_GG705110.fna forwards 2874s 0%......... (T -0.127 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 10%......... (T -0.061 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 20%......... (T -0.036 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 30%......... (T -0.024 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 90%......... 2874s Hashing NZ_GG705110.fna backwards 2874s 0%......... (T -0.109 seconds) ETA: Fri Mar 15 09:10:26 2024 2874s 10%......... (T -0.050 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 20%......... (T -0.032 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 30%......... (T -0.021 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 40%......... (T -0.015 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 50%......... (T -0.010 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:25 2024 2874s 90%......... 2874s Hashing NZ_GG705110.gbk forwards 2874s 0%......... (T -0.033 seconds) ETA: Fri Mar 15 09:10:25 2024 2875s 10%......... (T -0.119 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 20%......... (T -0.070 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 30%......... (T -0.046 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 40%......... (T -0.031 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 50%......... (T -0.021 seconds) ETA: Fri Mar 15 09:10:25 2024 2875s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:10:25 2024 2875s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:10:25 2024 2875s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:25 2024 2875s 90%......... 2875s Hashing NZ_GG705110.gbk backwards 2875s 0%......... (T -0.124 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 10%......... (T -0.060 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 20%......... (T -0.036 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 30%......... (T -0.023 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 40%......... (T -0.016 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 90%......... 2875s Initial hashing took: 0.181 seconds 2875s Extracting anchors from hash-space. 2875s (T -0.269 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 6%. (T -0.277 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 18%. (T -0.140 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 31%. (T -0.087 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 43%. (T -0.053 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 56%. (T -0.047 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 68%. (T -0.028 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 81%. (T -0.011 seconds) ETA: Fri Mar 15 09:10:26 2024 2875s 93%. 2875s Anchor extraction completed in: 0.178 seconds 2875s Total anchors: 0 2875s Anchor extraction + merge time: 0.179 seconds 2875s Total processing time: 6.603 seconds 2875s Writing anchors... 2875s Total seeds used in anchors: 16 2875s Hash performance: 2875s Keys used: 16 out of 16 possible (100.00%). 2875s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2875s Average pigeons per pigeon hole: 1 2875s Writing 16 repeats...Output writing finished in: 0.128 seconds 2875s Total time: 6.732 seconds 2875s Murasaki finished! 2875s PASSED MURASAKI 2875s 2875s Testing Genepare on NZ_GG705110.fna 2875s 18446744073709551406 2875s PASSED GENEPARSE 2875s 2880s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2880s Testing mbfa on NZ_GG705110.fna 2880s PASSED mbfa 2880s 2880s Test Murasaki on NZ_GG705111.fna 2881s Verbosity level is: 0 2881s Writing to: output/test 2881s Pattern is: 101 2881s Max usable hash bits: 27 2881s Hit filter is: 0 2881s Hash table type is: EcoHash 2881s Hashing every: 1 base 2881s Histogram detail is: 0 2881s Hashing function is: 3 2881s Collision profiling is: disabled 2881s Repeats are: unmasked 2881s Mergefilter is at: 100 2881s Random seed: 1710493832 (automatic) 2881s Bitscore output: on 2881s Leave status records: no 2881s Join neighbors is: off 2881s Target memory is: 1.28 GB 2881s Retain members is: true 2881s Store repeatmap? yes 2881s Reverse complement data is generated on the fly 2881s Rifts allowed: 0 2881s Fuzzy Extension: yes 2881s Score by minimum pair: yes 2881s Gapped anchors: no 2881s Large sequence support is: enabled => seqpos is 8 bytes 2881s Murasaki version 1.68.6 (LARGESEQ) 2881s Loading NZ_GG705111.fna 2881s Read 788bp (788 bytesp) in 0.024 seconds (31.7 KBp/s) 2881s Done with forward strand (788bp). Preparing reverse complement... 2881s <-> Reversing metdata. 2881s Done. 2881s Seq NZ_GG705111.fna loaded. 788 bytes 2881s Loading NZ_GG705111.gbk 2881s Read 788bp (788 bytesp) in 0.006 seconds (131.5 KBp/s) 2881s Done with forward strand (788bp). Preparing reverse complement... 2881s <-> Reversing metdata. 2881s Done. 2881s Seq NZ_GG705111.gbk loaded. 788 bytes 2881s Sequence loading took: 0.032 seconds 2881s Forward frequencies: A:35.1523% C:15.3553% G:20.0508% T:29.4416% 2881s Global base frequencies: A/T:64.5939% C/G:35.4061% 2881s Pat: 3 bases long with weight 2 2881s 1 101 2881s Computing hash parameters... 2881s Using 4 hashbits 2881s 0%......... (T -6.436 seconds) ETA: Fri Mar 15 09:10:39 2024 2883s 10%......... (T -8.627 seconds) ETA: Fri Mar 15 09:10:42 2024 2883s 20%......... (T -5.570 seconds) ETA: Fri Mar 15 09:10:40 2024 2884s 30%......... (T -4.288 seconds) ETA: Fri Mar 15 09:10:39 2024 2884s 40%......... (T -3.566 seconds) ETA: Fri Mar 15 09:10:39 2024 2886s 50%......... (T -3.207 seconds) ETA: Fri Mar 15 09:10:40 2024 2886s 60%......... (T -2.378 seconds) ETA: Fri Mar 15 09:10:40 2024 2887s 70%......... (T -1.572 seconds) ETA: Fri Mar 15 09:10:40 2024 2888s 80%......... (T -0.729 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 91%........ 2889s Acceptable hash function found after 1000 cycles. 2889s Best uses 2/2 bases and has 0 empties from 2 inputs. 2889s Score: 0.96875 (cf. worst: -4.51562) 2889s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2889s Total correlation penalty: 0 2889s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2889s 10 2889s == 2889s w[ 0]>>29: -.C 2889s w[ 0]>>30: A.- 2889s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2889s Ecolist (optimistic): Expcted entries per list: 8 2889s Ecolist (optimistic): Minimum chunks per list: 4 2889s Would take minimum 256.000000 bytes to make perfect hash. 2889s Hashing 3.08 KB of sequence requires: 2889s ~ linear (in seq length) hashing cost of 5.00 KB 2889s ~ linear (in seq length) expected anchor cost of 73.88 KB 2889s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2889s Expected memory usage (without anchors): 5.25 KB 2889s Expected memory usage (with anchors): 79.13 KB 2889s Hash parameters computed in 8.204 seconds 2889s Creating storage structures: 16 entries in 256 bytes space. 2889s Storage structures created in: 0.041 seconds 2889s 2889s Hashing NZ_GG705111.fna forwards 2889s 0%......... (T -0.220 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 10%......... (T -0.100 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 20%......... (T -0.059 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 30%......... (T -0.039 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 40%......... (T -0.026 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 50%......... (T -0.018 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 60%......... (T -0.012 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 90%......... 2889s Hashing NZ_GG705111.fna backwards 2889s 0%......... (T -0.031 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 10%......... (T -0.169 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 20%......... (T -0.100 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 30%......... (T -0.065 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 40%......... (T -0.044 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 50%......... (T -0.029 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 60%......... (T -0.019 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 90%......... 2889s Hashing NZ_GG705111.gbk forwards 2889s 0%......... (T -0.020 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 10%......... (T -0.012 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 20%......... (T -0.008 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 30%......... (T -0.006 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 40%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 90%......... 2889s Hashing NZ_GG705111.gbk backwards 2889s 0%......... (T -0.323 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 10%......... (T -0.146 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 20%......... (T -0.086 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 30%......... (T -0.056 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 40%......... (T -0.038 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 50%......... (T -0.061 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 60%......... (T -0.039 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 70%......... (T -0.023 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 80%......... (T -0.010 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 90%......... 2889s Initial hashing took: 0.315 seconds 2889s Extracting anchors from hash-space. 2889s (T -0.019 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 6%. (T -0.197 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 18%. (T -0.131 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 31%. (T -0.082 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 43%. (T -0.084 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 56%. (T -0.063 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 68%. (T -0.034 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 81%. (T -0.013 seconds) ETA: Fri Mar 15 09:10:40 2024 2889s 93%. 2889s Anchor extraction completed in: 0.191 seconds 2889s Total anchors: 0 2889s Anchor extraction + merge time: 0.192 seconds 2889s Total processing time: 8.800 seconds 2889s Writing anchors... 2889s Total seeds used in anchors: 16 2889s Hash performance: 2889s Keys used: 16 out of 16 possible (100.00%). 2889s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2889s Average pigeons per pigeon hole: 1 2890s Writing 16 repeats...Output writing finished in: 0.096 seconds 2890s Total time: 8.895 seconds 2890s Murasaki finished! 2890s PASSED MURASAKI 2890s 2890s Testing Genepare on NZ_GG705111.fna 2890s 18446744073709551405 2890s PASSED GENEPARSE 2890s 2892s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2892s Testing mbfa on NZ_GG705111.fna 2892s PASSED mbfa 2892s 2893s Test Murasaki on NZ_GG705112.fna 2893s Verbosity level is: 0 2893s Writing to: output/test 2893s Pattern is: 101 2893s Max usable hash bits: 27 2893s Hit filter is: 0 2893s Hash table type is: EcoHash 2893s Hashing every: 1 base 2893s Histogram detail is: 0 2893s Hashing function is: 3 2893s Collision profiling is: disabled 2893s Repeats are: unmasked 2893s Mergefilter is at: 100 2893s Random seed: 1710493844 (automatic) 2893s Bitscore output: on 2893s Leave status records: no 2893s Join neighbors is: off 2893s Target memory is: 1.28 GB 2893s Retain members is: true 2893s Store repeatmap? yes 2893s Reverse complement data is generated on the fly 2893s Rifts allowed: 0 2893s Fuzzy Extension: yes 2893s Score by minimum pair: yes 2893s Gapped anchors: no 2893s Large sequence support is: enabled => seqpos is 8 bytes 2893s Murasaki version 1.68.6 (LARGESEQ) 2893s Loading NZ_GG705112.fna 2893s Read 787bp (787 bytesp) in 0.021 seconds (37.4 KBp/s) 2893s Done with forward strand (787bp). Preparing reverse complement... 2893s <-> Reversing metdata. 2893s Done. 2893s Seq NZ_GG705112.fna loaded. 787 bytes 2893s Loading NZ_GG705112.gbk 2893s Read 787bp (787 bytesp) in 0.026 seconds (29.5 KBp/s) 2893s Done with forward strand (787bp). Preparing reverse complement... 2893s <-> Reversing metdata. 2893s Done. 2893s Seq NZ_GG705112.gbk loaded. 787 bytes 2893s Sequence loading took: 0.073 seconds 2893s Forward frequencies: A:29.352% C:21.601% G:15.5019% T:33.5451% 2893s Global base frequencies: A/T:62.8971% C/G:37.1029% 2893s Pat: 3 bases long with weight 2 2893s 1 101 2893s Computing hash parameters... 2893s Using 4 hashbits 2893s 0%......... (T -5.571 seconds) ETA: Fri Mar 15 09:10:50 2024 2894s 10%......... (T -4.653 seconds) ETA: Fri Mar 15 09:10:50 2024 2895s 20%......... (T -4.200 seconds) ETA: Fri Mar 15 09:10:50 2024 2895s 30%......... (T -3.377 seconds) ETA: Fri Mar 15 09:10:49 2024 2896s 40%......... (T -2.853 seconds) ETA: Fri Mar 15 09:10:50 2024 2897s 50%......... (T -2.717 seconds) ETA: Fri Mar 15 09:10:51 2024 2898s 60%......... (T -2.116 seconds) ETA: Fri Mar 15 09:10:51 2024 2899s 70%......... (T -1.445 seconds) ETA: Fri Mar 15 09:10:51 2024 2899s 80%......... (T -0.652 seconds) ETA: Fri Mar 15 09:10:51 2024 2900s 91%........ 2900s Acceptable hash function found after 1000 cycles. 2900s Best uses 2/2 bases and has 0 empties from 2 inputs. 2900s Score: 0.96875 (cf. worst: -4.51562) 2900s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2900s Total correlation penalty: 0 2900s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2900s 10 2900s == 2900s w[ 0]>>29: -.C 2900s w[ 0]>>30: A.- 2900s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2900s Ecolist (optimistic): Expcted entries per list: 8 2900s Ecolist (optimistic): Minimum chunks per list: 4 2900s Would take minimum 256.000000 bytes to make perfect hash. 2900s Hashing 3.07 KB of sequence requires: 2900s ~ linear (in seq length) hashing cost of 4.99 KB 2900s ~ linear (in seq length) expected anchor cost of 73.78 KB 2900s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2900s Expected memory usage (without anchors): 5.24 KB 2900s Expected memory usage (with anchors): 79.02 KB 2900s Hash parameters computed in 7.420 seconds 2900s Creating storage structures: 16 entries in 256 bytes space. 2900s Storage structures created in: 0.022 seconds 2900s 2900s Hashing NZ_GG705112.fna forwards 2900s 0%......... (T -0.357 seconds) ETA: Fri Mar 15 09:10:52 2024 2900s 10%......... (T -0.162 seconds) ETA: Fri Mar 15 09:10:51 2024 2900s 20%......... (T -0.096 seconds) ETA: Fri Mar 15 09:10:51 2024 2900s 30%......... (T -0.062 seconds) ETA: Fri Mar 15 09:10:51 2024 2900s 40%......... (T -0.087 seconds) ETA: Fri Mar 15 09:10:51 2024 2900s 50%......... (T -0.058 seconds) ETA: Fri Mar 15 09:10:51 2024 2900s 60%......... (T -0.038 seconds) ETA: Fri Mar 15 09:10:51 2024 2900s 70%......... (T -0.022 seconds) ETA: Fri Mar 15 09:10:51 2024 2900s 80%......... (T -0.010 seconds) ETA: Fri Mar 15 09:10:51 2024 2901s 90%......... 2901s Hashing NZ_GG705112.fna backwards 2901s 0%......... (T -0.292 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 10%......... (T -0.133 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 20%......... (T -0.079 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 30%......... (T -0.051 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 40%......... (T -0.034 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 50%......... (T -0.023 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 60%......... (T -0.015 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 70%......... (T -0.009 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 90%......... 2901s Hashing NZ_GG705112.gbk forwards 2901s 0%......... (T -0.638 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 10%......... (T -0.285 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 20%......... (T -0.168 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 30%......... (T -0.109 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 40%......... (T -0.073 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 50%......... (T -0.049 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 60%......... (T -0.039 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 70%......... (T -0.023 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 80%......... (T -0.010 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 90%......... 2901s Hashing NZ_GG705112.gbk backwards 2901s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 20%......... (T -0.042 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 30%......... (T -0.028 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 40%......... (T -0.019 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 50%......... (T -0.013 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 60%......... (T -0.009 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 90%......... 2901s Initial hashing took: 0.459 seconds 2901s Extracting anchors from hash-space. 2901s (T -0.366 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 6%. (T -0.207 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 18%. (T -0.125 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 31%. (T -0.140 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 43%. (T -0.091 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 56%. (T -0.071 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 68%. (T -0.043 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 81%. (T -0.016 seconds) ETA: Fri Mar 15 09:10:52 2024 2901s 93%. 2901s Anchor extraction completed in: 0.211 seconds 2901s Total anchors: 0 2901s Anchor extraction + merge time: 0.239 seconds 2901s Total processing time: 8.214 seconds 2901s Writing anchors... 2901s Total seeds used in anchors: 16 2901s Hash performance: 2901s Keys used: 16 out of 16 possible (100.00%). 2901s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2901s Average pigeons per pigeon hole: 1 2901s Writing 16 repeats...Output writing finished in: 0.136 seconds 2901s Total time: 8.350 seconds 2901s Murasaki finished! 2901s PASSED MURASAKI 2901s 2901s Testing Genepare on NZ_GG705112.fna 2901s 18446744073709551404 2901s PASSED GENEPARSE 2901s 2904s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2904s Testing mbfa on NZ_GG705112.fna 2904s PASSED mbfa 2904s 2904s Test Murasaki on NZ_GG705113.fna 2904s Verbosity level is: 0 2904s Writing to: output/test 2904s Pattern is: 101 2904s Max usable hash bits: 27 2904s Hit filter is: 0 2904s Hash table type is: EcoHash 2904s Hashing every: 1 base 2904s Histogram detail is: 0 2904s Hashing function is: 3 2904s Collision profiling is: disabled 2904s Repeats are: unmasked 2904s Mergefilter is at: 100 2904s Random seed: 1710493855 (automatic) 2904s Bitscore output: on 2904s Leave status records: no 2904s Join neighbors is: off 2904s Target memory is: 1.28 GB 2904s Retain members is: true 2904s Store repeatmap? yes 2904s Reverse complement data is generated on the fly 2904s Rifts allowed: 0 2904s Fuzzy Extension: yes 2904s Score by minimum pair: yes 2904s Gapped anchors: no 2904s Large sequence support is: enabled => seqpos is 8 bytes 2904s Murasaki version 1.68.6 (LARGESEQ) 2904s Loading NZ_GG705113.fna 2904s Read 776bp (776 bytesp) in 0.026 seconds (29.2 KBp/s) 2904s Done with forward strand (776bp). Preparing reverse complement... 2904s <-> Reversing metdata. 2904s Done. 2904s Seq NZ_GG705113.fna loaded. 776 bytes 2904s Loading NZ_GG705113.gbk 2904s Read 776bp (776 bytesp) in 0.032 seconds (23.7 KBp/s) 2904s Done with forward strand (776bp). Preparing reverse complement... 2904s <-> Reversing metdata. 2904s Done. 2904s Seq NZ_GG705113.gbk loaded. 776 bytes 2904s Sequence loading took: 0.078 seconds 2904s Forward frequencies: A:27.3196% C:23.7113% G:22.6804% T:26.2887% 2904s Global base frequencies: A/T:53.6082% C/G:46.3918% 2904s Pat: 3 bases long with weight 2 2904s 1 101 2904s Computing hash parameters... 2904s Using 4 hashbits 2905s 0%......... (T -5.325 seconds) ETA: Fri Mar 15 09:11:01 2024 2906s 10%......... (T -4.944 seconds) ETA: Fri Mar 15 09:11:02 2024 2906s 20%......... (T -4.570 seconds) ETA: Fri Mar 15 09:11:02 2024 2907s 30%......... (T -3.965 seconds) ETA: Fri Mar 15 09:11:02 2024 2908s 40%......... (T -3.446 seconds) ETA: Fri Mar 15 09:11:02 2024 2909s 50%......... (T -2.787 seconds) ETA: Fri Mar 15 09:11:02 2024 2909s 60%......... (T -2.043 seconds) ETA: Fri Mar 15 09:11:02 2024 2910s 70%......... (T -1.370 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 80%......... (T -0.595 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 91%........ 2911s Acceptable hash function found after 1000 cycles. 2911s Best uses 2/2 bases and has 0 empties from 2 inputs. 2911s Score: 0.96875 (cf. worst: -4.51562) 2911s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2911s Total correlation penalty: 0 2911s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2911s 10 2911s == 2911s w[ 0]>>29: -.C 2911s w[ 0]>>30: A.- 2911s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2911s Ecolist (optimistic): Expcted entries per list: 8 2911s Ecolist (optimistic): Minimum chunks per list: 4 2911s Would take minimum 256.000000 bytes to make perfect hash. 2911s Hashing 3.03 KB of sequence requires: 2911s ~ linear (in seq length) hashing cost of 4.93 KB 2911s ~ linear (in seq length) expected anchor cost of 72.75 KB 2911s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2911s Expected memory usage (without anchors): 5.18 KB 2911s Expected memory usage (with anchors): 77.93 KB 2911s Hash parameters computed in 6.473 seconds 2911s Creating storage structures: 16 entries in 256 bytes space. 2911s Storage structures created in: 0.040 seconds 2911s 2911s Hashing NZ_GG705113.fna forwards 2911s 0%......... (T -0.160 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 10%......... (T -0.073 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 20%......... (T -0.044 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 30%......... (T -0.030 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 40%......... (T -0.049 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 50%......... (T -0.033 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 70%......... (T -0.013 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 90%........ 2911s Hashing NZ_GG705113.fna backwards 2911s 0%......... (T -0.123 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 10%......... (T -0.056 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 20%......... (T -0.035 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 30%......... (T -0.023 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 40%......... (T -0.016 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 60%......... (T -0.021 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 70%......... (T -0.012 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 90%........ 2911s Hashing NZ_GG705113.gbk forwards 2911s 0%......... (T -0.166 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 10%......... (T -0.076 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 20%......... (T -0.045 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 30%......... (T -0.030 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 40%......... (T -0.020 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 50%......... (T -0.014 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 60%......... (T -0.009 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 90%........ 2911s Hashing NZ_GG705113.gbk backwards 2911s 0%......... (T -0.105 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 10%......... (T -0.049 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 20%......... (T -0.029 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 30%......... (T -0.051 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 40%......... (T -0.036 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 50%......... (T -0.024 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 60%......... (T -0.016 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 70%......... (T -0.009 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 90%........ 2911s Initial hashing took: 0.267 seconds 2911s Extracting anchors from hash-space. 2911s (T -0.183 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 6%. (T -0.072 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 18%. (T -0.069 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 31%. (T -0.075 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 43%. (T -0.057 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 56%. (T -0.040 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 68%. (T -0.025 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 81%. (T -0.009 seconds) ETA: Fri Mar 15 09:11:02 2024 2911s 93%. 2911s Anchor extraction completed in: 0.123 seconds 2911s Total anchors: 0 2911s Anchor extraction + merge time: 0.123 seconds 2911s Total processing time: 7.033 seconds 2911s Writing anchors... 2911s Total seeds used in anchors: 16 2911s Hash performance: 2911s Keys used: 16 out of 16 possible (100.00%). 2911s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2911s Average pigeons per pigeon hole: 1 2911s Writing 16 repeats...Output writing finished in: 0.057 seconds 2911s Total time: 7.090 seconds 2911s Murasaki finished! 2911s PASSED MURASAKI 2911s 2911s Testing Genepare on NZ_GG705113.fna 2912s 18446744073709551393 2912s PASSED GENEPARSE 2912s 2913s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2913s Testing mbfa on NZ_GG705113.fna 2914s PASSED mbfa 2914s 2914s Test Murasaki on NZ_GG705114.fna 2914s Verbosity level is: 0 2914s Writing to: output/test 2914s Pattern is: 101 2914s Max usable hash bits: 27 2914s Hit filter is: 0 2914s Hash table type is: EcoHash 2914s Hashing every: 1 base 2914s Histogram detail is: 0 2914s Hashing function is: 3 2914s Collision profiling is: disabled 2914s Repeats are: unmasked 2914s Mergefilter is at: 100 2914s Random seed: 1710493865 (automatic) 2914s Bitscore output: on 2914s Leave status records: no 2914s Join neighbors is: off 2914s Target memory is: 1.28 GB 2914s Retain members is: true 2914s Store repeatmap? yes 2914s Reverse complement data is generated on the fly 2914s Rifts allowed: 0 2914s Fuzzy Extension: yes 2914s Score by minimum pair: yes 2914s Gapped anchors: no 2914s Large sequence support is: enabled => seqpos is 8 bytes 2914s Murasaki version 1.68.6 (LARGESEQ) 2914s Loading NZ_GG705114.fna 2914s Read 713bp (713 bytesp) in 0.068 seconds (10.3 KBp/s) 2914s Done with forward strand (713bp). Preparing reverse complement... 2914s <-> Reversing metdata. 2914s Done. 2914s Seq NZ_GG705114.fna loaded. 713 bytes 2914s Loading NZ_GG705114.gbk 2914s Read 713bp (713 bytesp) in 0.092 seconds (7.6 KBp/s) 2914s Done with forward strand (713bp). Preparing reverse complement... 2914s <-> Reversing metdata. 2914s Done. 2914s Seq NZ_GG705114.gbk loaded. 713 bytes 2914s Sequence loading took: 0.224 seconds 2914s Forward frequencies: A:27.3492% C:13.0435% G:17.2511% T:42.3562% 2914s Global base frequencies: A/T:69.7055% C/G:30.2945% 2914s Pat: 3 bases long with weight 2 2914s 1 101 2914s Computing hash parameters... 2914s Using 4 hashbits 2915s 0%......... (T -10.123 seconds) ETA: Fri Mar 15 09:11:16 2024 2916s 10%......... (T -6.742 seconds) ETA: Fri Mar 15 09:11:14 2024 2916s 20%......... (T -5.274 seconds) ETA: Fri Mar 15 09:11:13 2024 2917s 30%......... (T -4.467 seconds) ETA: Fri Mar 15 09:11:13 2024 2918s 40%......... (T -3.581 seconds) ETA: Fri Mar 15 09:11:12 2024 2918s 50%......... (T -2.746 seconds) ETA: Fri Mar 15 09:11:12 2024 2919s 60%......... (T -1.995 seconds) ETA: Fri Mar 15 09:11:12 2024 2920s 70%......... (T -1.476 seconds) ETA: Fri Mar 15 09:11:13 2024 2921s 80%......... (T -0.667 seconds) ETA: Fri Mar 15 09:11:13 2024 2921s 91%........ 2921s Acceptable hash function found after 1000 cycles. 2921s Best uses 2/2 bases and has 0 empties from 2 inputs. 2921s Score: 0.96875 (cf. worst: -4.51562) 2921s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2921s Total correlation penalty: 0 2921s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2921s 10 2921s == 2921s w[ 0]>>29: -.C 2921s w[ 0]>>30: A.- 2921s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2921s Ecolist (optimistic): Expcted entries per list: 8 2921s Ecolist (optimistic): Minimum chunks per list: 4 2921s Would take minimum 256.000000 bytes to make perfect hash. 2921s Hashing 2.79 KB of sequence requires: 2921s ~ linear (in seq length) hashing cost of 4.52 KB 2921s ~ linear (in seq length) expected anchor cost of 66.84 KB 2921s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2921s Expected memory usage (without anchors): 4.77 KB 2921s Expected memory usage (with anchors): 71.61 KB 2921s Hash parameters computed in 7.020 seconds 2921s Creating storage structures: 16 entries in 256 bytes space. 2921s Storage structures created in: 0.008 seconds 2921s 2921s Hashing NZ_GG705114.fna forwards 2921s 0%........ (T -0.037 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 10%........ (T -0.018 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 20%........ (T -0.011 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 30%........ (T -0.008 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 40%........ (T -0.015 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 50%........ (T -0.010 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 60%........ (T -0.007 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 70%........ (T -0.006 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 81%........ (T -0.002 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 91%....... 2921s Hashing NZ_GG705114.fna backwards 2921s 0%........ (T -0.012 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 10%........ (T -0.008 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 20%........ (T -0.005 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 30%........ (T -0.004 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 40%........ (T -0.003 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 50%........ (T -0.002 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 60%........ (T -0.002 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 70%........ (T -0.002 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 81%........ (T -0.001 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 91%....... 2921s Hashing NZ_GG705114.gbk forwards 2921s 0%........ (T -0.057 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 10%........ (T -0.027 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 20%........ (T -0.016 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 30%........ (T -0.011 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 40%........ (T -0.008 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 50%........ (T -0.005 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 60%........ (T -0.004 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 70%........ (T -0.002 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 81%........ (T -0.001 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 91%....... 2921s Hashing NZ_GG705114.gbk backwards 2921s 0%........ (T -0.655 seconds) ETA: Fri Mar 15 09:11:13 2024 2921s 10%........ (T -0.293 seconds) ETA: Fri Mar 15 09:11:13 2024 2921s 20%........ (T -0.172 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 30%........ (T -0.111 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 40%........ (T -0.074 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 50%........ (T -0.050 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 60%........ (T -0.032 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 70%........ (T -0.020 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 81%........ (T -0.010 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 91%....... 2921s Initial hashing took: 0.172 seconds 2921s Extracting anchors from hash-space. 2921s (T -0.205 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 6%. (T -0.118 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 18%. (T -0.121 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 31%. (T -0.101 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 43%. (T -0.078 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 56%. (T -0.047 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 68%. (T -0.028 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 81%. (T -0.011 seconds) ETA: Fri Mar 15 09:11:12 2024 2921s 93%. 2921s Anchor extraction completed in: 0.170 seconds 2921s Total anchors: 0 2921s Anchor extraction + merge time: 0.170 seconds 2921s Total processing time: 7.652 seconds 2921s Writing anchors... 2921s Total seeds used in anchors: 16 2921s Hash performance: 2921s Keys used: 16 out of 16 possible (100.00%). 2921s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2921s Average pigeons per pigeon hole: 1 2922s Writing 16 repeats...Output writing finished in: 0.074 seconds 2922s Total time: 7.726 seconds 2922s Murasaki finished! 2922s PASSED MURASAKI 2922s 2922s Testing Genepare on NZ_GG705114.fna 2922s 18446744073709551330 2922s PASSED GENEPARSE 2922s 2924s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2924s Testing mbfa on NZ_GG705114.fna 2924s PASSED mbfa 2924s 2924s Test Murasaki on NZ_GG705115.fna 2925s Verbosity level is: 0 2925s Writing to: output/test 2925s Pattern is: 101 2925s Max usable hash bits: 27 2925s Hit filter is: 0 2925s Hash table type is: EcoHash 2925s Hashing every: 1 base 2925s Histogram detail is: 0 2925s Hashing function is: 3 2925s Collision profiling is: disabled 2925s Repeats are: unmasked 2925s Mergefilter is at: 100 2925s Random seed: 1710493876 (automatic) 2925s Bitscore output: on 2925s Leave status records: no 2925s Join neighbors is: off 2925s Target memory is: 1.28 GB 2925s Retain members is: true 2925s Store repeatmap? yes 2925s Reverse complement data is generated on the fly 2925s Rifts allowed: 0 2925s Fuzzy Extension: yes 2925s Score by minimum pair: yes 2925s Gapped anchors: no 2925s Large sequence support is: enabled => seqpos is 8 bytes 2925s Murasaki version 1.68.6 (LARGESEQ) 2925s Loading NZ_GG705115.fna 2925s Read 687bp (687 bytesp) in 0.006 seconds (108.6 KBp/s) 2925s Done with forward strand (687bp). Preparing reverse complement... 2925s <-> Reversing metdata. 2925s Done. 2925s Seq NZ_GG705115.fna loaded. 687 bytes 2925s Loading NZ_GG705115.gbk 2925s Read 687bp (687 bytesp) in 0.008 seconds (87.4 KBp/s) 2925s Done with forward strand (687bp). Preparing reverse complement... 2925s <-> Reversing metdata. 2925s Done. 2925s Seq NZ_GG705115.gbk loaded. 687 bytes 2925s Sequence loading took: 0.033 seconds 2925s Forward frequencies: A:36.3901% C:17.6128% G:19.5051% T:26.492% 2925s Global base frequencies: A/T:62.8821% C/G:37.1179% 2925s Pat: 3 bases long with weight 2 2925s 1 101 2925s Computing hash parameters... 2925s Using 4 hashbits 2925s 0%......... (T -4.722 seconds) ETA: Fri Mar 15 09:11:21 2024 2926s 10%......... (T -5.739 seconds) ETA: Fri Mar 15 09:11:23 2024 2927s 20%......... (T -4.874 seconds) ETA: Fri Mar 15 09:11:23 2024 2927s 30%......... (T -4.158 seconds) ETA: Fri Mar 15 09:11:23 2024 2928s 40%......... (T -3.531 seconds) ETA: Fri Mar 15 09:11:23 2024 2929s 50%......... (T -2.940 seconds) ETA: Fri Mar 15 09:11:23 2024 2930s 60%......... (T -2.201 seconds) ETA: Fri Mar 15 09:11:23 2024 2931s 70%......... (T -1.477 seconds) ETA: Fri Mar 15 09:11:23 2024 2931s 80%......... (T -0.664 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 91%........ 2932s Acceptable hash function found after 1000 cycles. 2932s Best uses 2/2 bases and has 0 empties from 2 inputs. 2932s Score: 0.96875 (cf. worst: -4.51562) 2932s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2932s Total correlation penalty: 0 2932s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2932s 10 2932s == 2932s w[ 0]>>29: -.C 2932s w[ 0]>>30: A.- 2932s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2932s Ecolist (optimistic): Expcted entries per list: 8 2932s Ecolist (optimistic): Minimum chunks per list: 4 2932s Would take minimum 256.000000 bytes to make perfect hash. 2932s Hashing 2.68 KB of sequence requires: 2932s ~ linear (in seq length) hashing cost of 4.35 KB 2932s ~ linear (in seq length) expected anchor cost of 64.41 KB 2932s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2932s Expected memory usage (without anchors): 4.60 KB 2932s Expected memory usage (with anchors): 69.01 KB 2932s Hash parameters computed in 7.402 seconds 2932s Creating storage structures: 16 entries in 256 bytes space. 2932s Storage structures created in: 0.004 seconds 2932s 2932s Hashing NZ_GG705115.fna forwards 2932s 0%......... (T -0.066 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 10%......... (T -0.032 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 20%......... (T -0.070 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 30%......... (T -0.046 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 40%......... (T -0.031 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 50%......... (T -0.021 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 90%........ 2932s Hashing NZ_GG705115.fna backwards 2932s 0%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 40%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 50%......... (T -0.019 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 60%......... (T -0.012 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 90%........ 2932s Hashing NZ_GG705115.gbk forwards 2932s 0%......... (T -0.009 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 10%......... (T -0.008 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 20%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 90%........ 2932s Hashing NZ_GG705115.gbk backwards 2932s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 40%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 60%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 90%........ 2932s Initial hashing took: 0.160 seconds 2932s Extracting anchors from hash-space. 2932s (T -0.034 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 6%. (T -0.021 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 18%. (T -0.019 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 31%. (T -0.042 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 43%. (T -0.044 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 56%. (T -0.030 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 68%. (T -0.021 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 81%. (T -0.007 seconds) ETA: Fri Mar 15 09:11:23 2024 2932s 93%. 2932s Anchor extraction completed in: 0.096 seconds 2932s Total anchors: 0 2932s Anchor extraction + merge time: 0.096 seconds 2932s Total processing time: 7.699 seconds 2932s Writing anchors... 2932s Total seeds used in anchors: 16 2932s Hash performance: 2932s Keys used: 16 out of 16 possible (100.00%). 2932s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2932s Average pigeons per pigeon hole: 1 2932s Writing 16 repeats...Output writing finished in: 0.077 seconds 2932s Total time: 7.777 seconds 2932s Murasaki finished! 2932s PASSED MURASAKI 2932s 2932s Testing Genepare on NZ_GG705115.fna 2933s 18446744073709551304 2933s PASSED GENEPARSE 2933s 2933s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2934s Testing mbfa on NZ_GG705115.fna 2934s PASSED mbfa 2934s 2934s Test Murasaki on NZ_GG705116.fna 2934s Verbosity level is: 0 2934s Writing to: output/test 2934s Pattern is: 101 2934s Max usable hash bits: 27 2934s Hit filter is: 0 2934s Hash table type is: EcoHash 2934s Hashing every: 1 base 2934s Histogram detail is: 0 2934s Hashing function is: 3 2934s Collision profiling is: disabled 2934s Repeats are: unmasked 2934s Mergefilter is at: 100 2934s Random seed: 1710493885 (automatic) 2934s Bitscore output: on 2934s Leave status records: no 2934s Join neighbors is: off 2934s Target memory is: 1.28 GB 2934s Retain members is: true 2934s Store repeatmap? yes 2934s Reverse complement data is generated on the fly 2934s Rifts allowed: 0 2934s Fuzzy Extension: yes 2934s Score by minimum pair: yes 2934s Gapped anchors: no 2934s Large sequence support is: enabled => seqpos is 8 bytes 2934s Murasaki version 1.68.6 (LARGESEQ) 2934s Loading NZ_GG705116.fna 2934s Read 687bp (687 bytesp) in 0.061 seconds (11.1 KBp/s) 2934s Done with forward strand (687bp). Preparing reverse complement... 2934s <-> Reversing metdata. 2934s Done. 2934s Seq NZ_GG705116.fna loaded. 687 bytes 2934s Loading NZ_GG705116.gbk 2934s Read 687bp (687 bytesp) in 0.029 seconds (23.5 KBp/s) 2934s Done with forward strand (687bp). Preparing reverse complement... 2934s <-> Reversing metdata. 2934s Done. 2934s Seq NZ_GG705116.gbk loaded. 687 bytes 2934s Sequence loading took: 0.095 seconds 2934s Forward frequencies: A:36.3901% C:18.0495% G:19.7962% T:25.7642% 2934s Global base frequencies: A/T:62.1543% C/G:37.8457% 2934s Pat: 3 bases long with weight 2 2934s 1 101 2934s Computing hash parameters... 2934s Using 4 hashbits 2935s 0%......... (T -5.196 seconds) ETA: Fri Mar 15 09:11:31 2024 2935s 10%......... (T -4.916 seconds) ETA: Fri Mar 15 09:11:31 2024 2936s 20%......... (T -4.012 seconds) ETA: Fri Mar 15 09:11:31 2024 2936s 30%......... (T -3.523 seconds) ETA: Fri Mar 15 09:11:31 2024 2937s 40%......... (T -2.832 seconds) ETA: Fri Mar 15 09:11:31 2024 2937s 50%......... (T -2.258 seconds) ETA: Fri Mar 15 09:11:31 2024 2938s 60%......... (T -1.612 seconds) ETA: Fri Mar 15 09:11:30 2024 2939s 70%......... (T -1.173 seconds) ETA: Fri Mar 15 09:11:31 2024 2939s 80%......... (T -0.535 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 91%........ 2940s Acceptable hash function found after 1000 cycles. 2940s Best uses 2/2 bases and has 0 empties from 2 inputs. 2940s Score: 0.96875 (cf. worst: -4.51562) 2940s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2940s Total correlation penalty: 0 2940s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2940s 10 2940s == 2940s w[ 0]>>29: -.C 2940s w[ 0]>>30: A.- 2940s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2940s Ecolist (optimistic): Expcted entries per list: 8 2940s Ecolist (optimistic): Minimum chunks per list: 4 2940s Would take minimum 256.000000 bytes to make perfect hash. 2940s Hashing 2.68 KB of sequence requires: 2940s ~ linear (in seq length) hashing cost of 4.35 KB 2940s ~ linear (in seq length) expected anchor cost of 64.41 KB 2940s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2940s Expected memory usage (without anchors): 4.60 KB 2940s Expected memory usage (with anchors): 69.01 KB 2940s Hash parameters computed in 5.856 seconds 2940s Creating storage structures: 16 entries in 256 bytes space. 2940s Storage structures created in: 0.008 seconds 2940s 2940s Hashing NZ_GG705116.fna forwards 2940s 0%......... (T -0.025 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 10%......... (T -0.023 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 20%......... (T -0.014 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 30%......... (T -0.010 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 40%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 50%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 90%........ 2940s Hashing NZ_GG705116.fna backwards 2940s 0%......... (T -0.026 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 10%......... (T -0.020 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 20%......... (T -0.013 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 30%......... (T -0.009 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 40%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 60%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 90%........ 2940s Hashing NZ_GG705116.gbk forwards 2940s 0%......... (T -0.030 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 10%......... (T -0.015 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 20%......... (T -0.010 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 30%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 40%......... (T -0.005 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 90%........ 2940s Hashing NZ_GG705116.gbk backwards 2940s 0%......... (T -0.008 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 10%......... (T -0.022 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 20%......... (T -0.014 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 30%......... (T -0.010 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 40%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 50%......... (T -0.005 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 60%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 70%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 90%........ 2940s Initial hashing took: 0.084 seconds 2940s Extracting anchors from hash-space. 2940s (T -0.094 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 6%. (T -0.101 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 18%. (T -0.060 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 31%. (T -0.054 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 43%. (T -0.042 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 56%. (T -0.028 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 68%. (T -0.015 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 81%. (T -0.006 seconds) ETA: Fri Mar 15 09:11:31 2024 2940s 93%. 2940s Anchor extraction completed in: 0.081 seconds 2940s Total anchors: 0 2940s Anchor extraction + merge time: 0.081 seconds 2940s Total processing time: 6.167 seconds 2940s Writing anchors... 2940s Total seeds used in anchors: 16 2940s Hash performance: 2940s Keys used: 16 out of 16 possible (100.00%). 2940s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2940s Average pigeons per pigeon hole: 1 2940s Writing 16 repeats...Output writing finished in: 0.120 seconds 2940s Total time: 6.287 seconds 2940s Murasaki finished! 2940s PASSED MURASAKI 2940s 2940s Testing Genepare on NZ_GG705116.fna 2940s 18446744073709551304 2940s PASSED GENEPARSE 2940s 2942s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2942s Testing mbfa on NZ_GG705116.fna 2942s PASSED mbfa 2942s 2942s Test Murasaki on NZ_GG705117.fna 2942s Verbosity level is: 0 2942s Writing to: output/test 2942s Pattern is: 101 2942s Max usable hash bits: 27 2942s Hit filter is: 0 2942s Hash table type is: EcoHash 2942s Hashing every: 1 base 2942s Histogram detail is: 0 2942s Hashing function is: 3 2942s Collision profiling is: disabled 2942s Repeats are: unmasked 2942s Mergefilter is at: 100 2942s Random seed: 1710493893 (automatic) 2942s Bitscore output: on 2942s Leave status records: no 2942s Join neighbors is: off 2942s Target memory is: 1.28 GB 2942s Retain members is: true 2942s Store repeatmap? yes 2942s Reverse complement data is generated on the fly 2942s Rifts allowed: 0 2942s Fuzzy Extension: yes 2942s Score by minimum pair: yes 2942s Gapped anchors: no 2942s Large sequence support is: enabled => seqpos is 8 bytes 2942s Murasaki version 1.68.6 (LARGESEQ) 2942s Loading NZ_GG705117.fna 2942s Read 678bp (678 bytesp) in 0.006 seconds (107.2 KBp/s) 2942s Done with forward strand (678bp). Preparing reverse complement... 2942s <-> Reversing metdata. 2942s Done. 2942s Seq NZ_GG705117.fna loaded. 678 bytes 2942s Loading NZ_GG705117.gbk 2942s Read 678bp (678 bytesp) in 0.024 seconds (27.7 KBp/s) 2942s Done with forward strand (678bp). Preparing reverse complement... 2942s <-> Reversing metdata. 2942s Done. 2942s Seq NZ_GG705117.gbk loaded. 678 bytes 2942s Sequence loading took: 0.050 seconds 2942s Forward frequencies: A:30.3835% C:19.6165% G:13.7168% T:36.2832% 2942s Global base frequencies: A/T:66.6667% C/G:33.3333% 2942s Pat: 3 bases long with weight 2 2942s 1 101 2942s Computing hash parameters... 2942s Using 4 hashbits 2943s 0%......... (T -4.189 seconds) ETA: Fri Mar 15 09:11:38 2024 2943s 10%......... (T -2.732 seconds) ETA: Fri Mar 15 09:11:37 2024 2943s 20%......... (T -2.094 seconds) ETA: Fri Mar 15 09:11:36 2024 2944s 30%......... (T -1.898 seconds) ETA: Fri Mar 15 09:11:37 2024 2944s 40%......... (T -1.875 seconds) ETA: Fri Mar 15 09:11:37 2024 2945s 50%......... (T -1.610 seconds) ETA: Fri Mar 15 09:11:37 2024 2945s 60%......... (T -1.128 seconds) ETA: Fri Mar 15 09:11:37 2024 2945s 70%......... (T -0.755 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 80%......... (T -0.339 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 91%........ 2946s Acceptable hash function found after 1000 cycles. 2946s Best uses 2/2 bases and has 0 empties from 2 inputs. 2946s Score: 0.96875 (cf. worst: -4.51562) 2946s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2946s Total correlation penalty: 0 2946s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2946s 10 2946s == 2946s w[ 0]>>29: -.C 2946s w[ 0]>>30: A.- 2946s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2946s Ecolist (optimistic): Expcted entries per list: 8 2946s Ecolist (optimistic): Minimum chunks per list: 4 2946s Would take minimum 256.000000 bytes to make perfect hash. 2946s Hashing 2.65 KB of sequence requires: 2946s ~ linear (in seq length) hashing cost of 4.30 KB 2946s ~ linear (in seq length) expected anchor cost of 63.56 KB 2946s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2946s Expected memory usage (without anchors): 4.55 KB 2946s Expected memory usage (with anchors): 68.12 KB 2946s Hash parameters computed in 3.716 seconds 2946s Creating storage structures: 16 entries in 256 bytes space. 2946s Storage structures created in: 0.012 seconds 2946s 2946s Hashing NZ_GG705117.fna forwards 2946s 0%......... (T -0.010 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 10%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 20%......... (T -0.005 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 40%......... (T -0.012 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 50%......... (T -0.008 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 90%........ 2946s Hashing NZ_GG705117.fna backwards 2946s 0%......... (T -0.174 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 10%......... (T -0.079 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 20%......... (T -0.047 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 30%......... (T -0.031 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 40%......... (T -0.021 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 50%......... (T -0.015 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 60%......... (T -0.024 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 90%........ 2946s Hashing NZ_GG705117.gbk forwards 2946s 0%......... (T -0.062 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 10%......... (T -0.030 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 20%......... (T -0.019 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 30%......... (T -0.013 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 40%......... (T -0.009 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 50%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 60%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 70%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 80%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 90%........ 2946s Hashing NZ_GG705117.gbk backwards 2946s 0%......... (T -0.067 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 10%......... (T -0.032 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 20%......... (T -0.031 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 30%......... (T -0.021 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 40%......... (T -0.014 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 50%......... (T -0.010 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 60%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 90%........ 2946s Initial hashing took: 0.176 seconds 2946s Extracting anchors from hash-space. 2946s (T -0.078 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 6%. (T -0.128 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 18%. (T -0.082 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 31%. (T -0.059 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 43%. (T -0.043 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 56%. (T -0.032 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 68%. (T -0.018 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 81%. (T -0.007 seconds) ETA: Fri Mar 15 09:11:37 2024 2946s 93%. 2946s Anchor extraction completed in: 0.109 seconds 2946s Total anchors: 0 2946s Anchor extraction + merge time: 0.111 seconds 2946s Total processing time: 4.067 seconds 2946s Writing anchors... 2946s Total seeds used in anchors: 16 2946s Hash performance: 2946s Keys used: 16 out of 16 possible (100.00%). 2946s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2946s Average pigeons per pigeon hole: 1 2946s Writing 16 repeats...Output writing finished in: 0.067 seconds 2946s Total time: 4.135 seconds 2946s Murasaki finished! 2946s PASSED MURASAKI 2946s 2946s Testing Genepare on NZ_GG705117.fna 2947s 18446744073709551295 2947s PASSED GENEPARSE 2947s 2949s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2949s Testing mbfa on NZ_GG705117.fna 2949s PASSED mbfa 2949s 2949s Test Murasaki on NZ_GG705118.fna 2949s Verbosity level is: 0 2949s Writing to: output/test 2949s Pattern is: 101 2949s Max usable hash bits: 27 2949s Hit filter is: 0 2949s Hash table type is: EcoHash 2949s Hashing every: 1 base 2949s Histogram detail is: 0 2949s Hashing function is: 3 2949s Collision profiling is: disabled 2949s Repeats are: unmasked 2949s Mergefilter is at: 100 2949s Random seed: 1710493900 (automatic) 2949s Bitscore output: on 2949s Leave status records: no 2949s Join neighbors is: off 2949s Target memory is: 1.28 GB 2949s Retain members is: true 2949s Store repeatmap? yes 2949s Reverse complement data is generated on the fly 2949s Rifts allowed: 0 2949s Fuzzy Extension: yes 2949s Score by minimum pair: yes 2949s Gapped anchors: no 2949s Large sequence support is: enabled => seqpos is 8 bytes 2949s Murasaki version 1.68.6 (LARGESEQ) 2949s Loading NZ_GG705118.fna 2949s Read 665bp (665 bytesp) in 0.010 seconds (67.8 KBp/s) 2949s Done with forward strand (665bp). Preparing reverse complement... 2949s <-> Reversing metdata. 2949s Done. 2949s Seq NZ_GG705118.fna loaded. 665 bytes 2949s Loading NZ_GG705118.gbk 2949s Read 665bp (665 bytesp) in 0.007 seconds (87.4 KBp/s) 2949s Done with forward strand (665bp). Preparing reverse complement... 2949s <-> Reversing metdata. 2949s Done. 2949s Seq NZ_GG705118.gbk loaded. 665 bytes 2949s Sequence loading took: 0.028 seconds 2949s Forward frequencies: A:28.7218% C:21.8045% G:23.609% T:25.8647% 2949s Global base frequencies: A/T:54.5865% C/G:45.4135% 2949s Pat: 3 bases long with weight 2 2949s 1 101 2949s Computing hash parameters... 2949s Using 4 hashbits 2949s 0%......... (T -2.115 seconds) ETA: Fri Mar 15 09:11:42 2024 2949s 10%......... (T -2.004 seconds) ETA: Fri Mar 15 09:11:42 2024 2950s 20%......... (T -1.853 seconds) ETA: Fri Mar 15 09:11:42 2024 2950s 30%......... (T -1.566 seconds) ETA: Fri Mar 15 09:11:42 2024 2950s 40%......... (T -1.353 seconds) ETA: Fri Mar 15 09:11:42 2024 2951s 50%......... (T -1.215 seconds) ETA: Fri Mar 15 09:11:43 2024 2951s 60%......... (T -1.019 seconds) ETA: Fri Mar 15 09:11:43 2024 2952s 70%......... (T -0.722 seconds) ETA: Fri Mar 15 09:11:43 2024 2952s 80%......... (T -0.332 seconds) ETA: Fri Mar 15 09:11:43 2024 2953s 91%........ 2953s Acceptable hash function found after 1000 cycles. 2953s Best uses 2/2 bases and has 0 empties from 2 inputs. 2953s Score: 0.96875 (cf. worst: -4.51562) 2953s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2953s Total correlation penalty: 0 2953s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2953s 10 2953s == 2953s w[ 0]>>29: -.C 2953s w[ 0]>>30: A.- 2953s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2953s Ecolist (optimistic): Expcted entries per list: 8 2953s Ecolist (optimistic): Minimum chunks per list: 4 2953s Would take minimum 256.000000 bytes to make perfect hash. 2953s Hashing 2.60 KB of sequence requires: 2953s ~ linear (in seq length) hashing cost of 4.21 KB 2953s ~ linear (in seq length) expected anchor cost of 62.34 KB 2953s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2953s Expected memory usage (without anchors): 4.46 KB 2953s Expected memory usage (with anchors): 66.81 KB 2953s Hash parameters computed in 3.841 seconds 2953s Creating storage structures: 16 entries in 256 bytes space. 2953s Storage structures created in: 0.005 seconds 2953s 2953s Hashing NZ_GG705118.fna forwards 2953s 0%......... (T -0.029 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 10%......... (T -0.025 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 20%......... (T -0.059 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 30%......... (T -0.039 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 40%......... (T -0.026 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 50%......... (T -0.018 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 60%......... (T -0.012 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 90%........ 2953s Hashing NZ_GG705118.fna backwards 2953s 0%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 50%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 90%........ 2953s Hashing NZ_GG705118.gbk forwards 2953s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 10%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 30%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 40%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 60%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 80%......... (T -0.000 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 90%........ 2953s Hashing NZ_GG705118.gbk backwards 2953s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 10%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 30%......... (T -0.042 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 40%......... (T -0.032 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 50%......... (T -0.021 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 70%......... (T -0.008 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 90%........ 2953s Initial hashing took: 0.133 seconds 2953s Extracting anchors from hash-space. 2953s (T -0.008 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 6%. (T -0.089 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 18%. (T -0.049 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 31%. (T -0.032 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 43%. (T -0.036 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 56%. (T -0.034 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 68%. (T -0.019 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 81%. (T -0.007 seconds) ETA: Fri Mar 15 09:11:44 2024 2953s 93%. 2953s Anchor extraction completed in: 0.101 seconds 2953s Total anchors: 0 2953s Anchor extraction + merge time: 0.101 seconds 2953s Total processing time: 4.118 seconds 2953s Writing anchors... 2953s Total seeds used in anchors: 16 2953s Hash performance: 2953s Keys used: 16 out of 16 possible (100.00%). 2953s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2953s Average pigeons per pigeon hole: 1 2953s Writing 16 repeats...Output writing finished in: 0.079 seconds 2953s Total time: 4.197 seconds 2953s Murasaki finished! 2953s PASSED MURASAKI 2953s 2953s Testing Genepare on NZ_GG705118.fna 2953s 18446744073709551282 2953s PASSED GENEPARSE 2953s 2955s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2955s Testing mbfa on NZ_GG705118.fna 2955s PASSED mbfa 2955s 2955s Test Murasaki on NZ_GG705119.fna 2955s Verbosity level is: 0 2955s Writing to: output/test 2955s Pattern is: 101 2955s Max usable hash bits: 27 2955s Hit filter is: 0 2955s Hash table type is: EcoHash 2955s Hashing every: 1 base 2955s Histogram detail is: 0 2955s Hashing function is: 3 2955s Collision profiling is: disabled 2955s Repeats are: unmasked 2955s Mergefilter is at: 100 2955s Random seed: 1710493906 (automatic) 2955s Bitscore output: on 2955s Leave status records: no 2955s Join neighbors is: off 2955s Target memory is: 1.28 GB 2955s Retain members is: true 2955s Store repeatmap? yes 2955s Reverse complement data is generated on the fly 2955s Rifts allowed: 0 2955s Fuzzy Extension: yes 2955s Score by minimum pair: yes 2955s Gapped anchors: no 2955s Large sequence support is: enabled => seqpos is 8 bytes 2955s Murasaki version 1.68.6 (LARGESEQ) 2955s Loading NZ_GG705119.fna 2955s Read 655bp (655 bytesp) in 0.032 seconds (19.9 KBp/s) 2955s Done with forward strand (655bp). Preparing reverse complement... 2955s <-> Reversing metdata. 2955s Done. 2955s Seq NZ_GG705119.fna loaded. 655 bytes 2955s Loading NZ_GG705119.gbk 2955s Read 655bp (655 bytesp) in 0.032 seconds (20.1 KBp/s) 2955s Done with forward strand (655bp). Preparing reverse complement... 2955s <-> Reversing metdata. 2955s Done. 2955s Seq NZ_GG705119.gbk loaded. 655 bytes 2955s Sequence loading took: 0.116 seconds 2955s Forward frequencies: A:30.3817% C:21.9847% G:22.5954% T:25.0382% 2955s Global base frequencies: A/T:55.4198% C/G:44.5802% 2955s Pat: 3 bases long with weight 2 2955s 1 101 2955s Computing hash parameters... 2955s Using 4 hashbits 2956s 0%......... (T -5.449 seconds) ETA: Fri Mar 15 09:11:52 2024 2956s 10%......... (T -4.323 seconds) ETA: Fri Mar 15 09:11:52 2024 2957s 20%......... (T -3.788 seconds) ETA: Fri Mar 15 09:11:52 2024 2957s 30%......... (T -3.121 seconds) ETA: Fri Mar 15 09:11:51 2024 2958s 40%......... (T -2.394 seconds) ETA: Fri Mar 15 09:11:51 2024 2958s 50%......... (T -1.877 seconds) ETA: Fri Mar 15 09:11:51 2024 2959s 60%......... (T -1.527 seconds) ETA: Fri Mar 15 09:11:51 2024 2959s 70%......... (T -1.055 seconds) ETA: Fri Mar 15 09:11:51 2024 2960s 80%......... (T -0.477 seconds) ETA: Fri Mar 15 09:11:51 2024 2961s 91%........ 2961s Acceptable hash function found after 1000 cycles. 2961s Best uses 2/2 bases and has 0 empties from 2 inputs. 2961s Score: 0.96875 (cf. worst: -4.51562) 2961s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2961s Total correlation penalty: 0 2961s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2961s 10 2961s == 2961s w[ 0]>>29: -.C 2961s w[ 0]>>30: A.- 2961s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2961s Ecolist (optimistic): Expcted entries per list: 8 2961s Ecolist (optimistic): Minimum chunks per list: 4 2961s Would take minimum 256.000000 bytes to make perfect hash. 2961s Hashing 2.56 KB of sequence requires: 2961s ~ linear (in seq length) hashing cost of 4.15 KB 2961s ~ linear (in seq length) expected anchor cost of 61.41 KB 2961s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2961s Expected memory usage (without anchors): 4.40 KB 2961s Expected memory usage (with anchors): 65.81 KB 2961s Hash parameters computed in 5.668 seconds 2961s Creating storage structures: 16 entries in 256 bytes space. 2961s Storage structures created in: 0.007 seconds 2961s 2961s Hashing NZ_GG705119.fna forwards 2961s 0%......... (T -0.141 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 10%......... (T -0.065 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 20%......... (T -0.039 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 30%......... (T -0.027 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 40%......... (T -0.060 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 50%......... (T -0.040 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 60%......... (T -0.026 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 70%......... (T -0.015 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 90%........ 2961s Hashing NZ_GG705119.fna backwards 2961s 0%......... (T -0.006 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 10%......... (T -0.005 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 20%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 40%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 60%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 70%......... (T -0.001 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 80%......... (T -0.000 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 90%........ 2961s Hashing NZ_GG705119.gbk forwards 2961s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 30%......... (T -0.066 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 40%......... (T -0.044 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 50%......... (T -0.030 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 60%......... (T -0.019 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 70%......... (T -0.011 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 90%........ 2961s Hashing NZ_GG705119.gbk backwards 2961s 0%......... (T -0.132 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 10%......... (T -0.061 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 20%......... (T -0.036 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 30%......... (T -0.024 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 40%......... (T -0.016 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 90%........ 2961s Initial hashing took: 0.208 seconds 2961s Extracting anchors from hash-space. 2961s (T -0.020 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 6%. (T -0.086 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 18%. (T -0.097 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 31%. (T -0.060 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 43%. (T -0.038 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 56%. (T -0.037 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 68%. (T -0.022 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 81%. (T -0.008 seconds) ETA: Fri Mar 15 09:11:52 2024 2961s 93%. 2961s Anchor extraction completed in: 0.109 seconds 2961s Total anchors: 0 2961s Anchor extraction + merge time: 0.109 seconds 2961s Total processing time: 6.111 seconds 2961s Writing anchors... 2961s Total seeds used in anchors: 16 2961s Hash performance: 2961s Keys used: 16 out of 16 possible (100.00%). 2961s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2961s Average pigeons per pigeon hole: 1 2961s Writing 16 repeats...Output writing finished in: 0.048 seconds 2961s Total time: 6.159 seconds 2961s Murasaki finished! 2961s PASSED MURASAKI 2961s 2961s Testing Genepare on NZ_GG705119.fna 2961s 18446744073709551272 2961s PASSED GENEPARSE 2961s 2962s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2962s Testing mbfa on NZ_GG705119.fna 2962s PASSED mbfa 2962s 2962s Test Murasaki on NZ_GG705120.fna 2962s Verbosity level is: 0 2962s Writing to: output/test 2962s Pattern is: 101 2962s Max usable hash bits: 27 2962s Hit filter is: 0 2962s Hash table type is: EcoHash 2962s Hashing every: 1 base 2962s Histogram detail is: 0 2962s Hashing function is: 3 2962s Collision profiling is: disabled 2962s Repeats are: unmasked 2962s Mergefilter is at: 100 2962s Random seed: 1710493913 (automatic) 2962s Bitscore output: on 2962s Leave status records: no 2962s Join neighbors is: off 2962s Target memory is: 1.28 GB 2962s Retain members is: true 2962s Store repeatmap? yes 2962s Reverse complement data is generated on the fly 2962s Rifts allowed: 0 2962s Fuzzy Extension: yes 2962s Score by minimum pair: yes 2962s Gapped anchors: no 2962s Large sequence support is: enabled => seqpos is 8 bytes 2962s Murasaki version 1.68.6 (LARGESEQ) 2962s Loading NZ_GG705120.fna 2963s Read 638bp (638 bytesp) in 0.021 seconds (30.4 KBp/s) 2963s Done with forward strand (638bp). Preparing reverse complement... 2963s <-> Reversing metdata. 2963s Done. 2963s Seq NZ_GG705120.fna loaded. 638 bytes 2963s Loading NZ_GG705120.gbk 2963s Read 638bp (638 bytesp) in 0.007 seconds (88.2 KBp/s) 2963s Done with forward strand (638bp). Preparing reverse complement... 2963s <-> Reversing metdata. 2963s Done. 2963s Seq NZ_GG705120.gbk loaded. 638 bytes 2963s Sequence loading took: 0.042 seconds 2963s Forward frequencies: A:23.511% C:22.7273% G:24.9216% T:28.8401% 2963s Global base frequencies: A/T:52.3511% C/G:47.6489% 2963s Pat: 3 bases long with weight 2 2963s 1 101 2963s Computing hash parameters... 2963s Using 4 hashbits 2963s 0%......... (T -3.135 seconds) ETA: Fri Mar 15 09:11:57 2024 2964s 10%......... (T -4.113 seconds) ETA: Fri Mar 15 09:11:59 2024 2964s 20%......... (T -3.811 seconds) ETA: Fri Mar 15 09:11:59 2024 2965s 30%......... (T -3.411 seconds) ETA: Fri Mar 15 09:11:59 2024 2965s 40%......... (T -2.743 seconds) ETA: Fri Mar 15 09:11:59 2024 2966s 50%......... (T -2.134 seconds) ETA: Fri Mar 15 09:11:59 2024 2967s 60%......... (T -1.778 seconds) ETA: Fri Mar 15 09:11:59 2024 2967s 70%......... (T -1.181 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 80%......... (T -0.518 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 91%........ 2968s Acceptable hash function found after 1000 cycles. 2968s Best uses 2/2 bases and has 0 empties from 2 inputs. 2968s Score: 0.96875 (cf. worst: -4.51562) 2968s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2968s Total correlation penalty: 0 2968s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2968s 10 2968s == 2968s w[ 0]>>29: -.C 2968s w[ 0]>>30: A.- 2968s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2968s Ecolist (optimistic): Expcted entries per list: 8 2968s Ecolist (optimistic): Minimum chunks per list: 4 2968s Would take minimum 256.000000 bytes to make perfect hash. 2968s Hashing 2.49 KB of sequence requires: 2968s ~ linear (in seq length) hashing cost of 4.05 KB 2968s ~ linear (in seq length) expected anchor cost of 59.81 KB 2968s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2968s Expected memory usage (without anchors): 4.30 KB 2968s Expected memory usage (with anchors): 64.11 KB 2968s Hash parameters computed in 5.475 seconds 2968s Creating storage structures: 16 entries in 256 bytes space. 2968s Storage structures created in: 0.006 seconds 2968s 2968s Hashing NZ_GG705120.fna forwards 2968s 0%......... (T -0.116 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 10%......... (T -0.055 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 20%......... (T -0.033 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 30%......... (T -0.022 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 40%......... (T -0.015 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 50%......... (T -0.010 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 90%........ 2968s Hashing NZ_GG705120.fna backwards 2968s 0%......... (T -0.075 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 10%......... (T -0.035 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 20%......... (T -0.037 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 30%......... (T -0.027 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 40%......... (T -0.018 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 90%........ 2968s Hashing NZ_GG705120.gbk forwards 2968s 0%......... (T -0.121 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 10%......... (T -0.056 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 20%......... (T -0.033 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 30%......... (T -0.022 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 40%......... (T -0.015 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 50%......... (T -0.015 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 60%......... (T -0.014 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 70%......... (T -0.009 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 90%........ 2968s Hashing NZ_GG705120.gbk backwards 2968s 0%......... (T -0.060 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 10%......... (T -0.032 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 20%......... (T -0.020 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 30%......... (T -0.013 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 40%......... (T -0.009 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 50%......... (T -0.017 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 90%........ 2968s Initial hashing took: 0.164 seconds 2968s Extracting anchors from hash-space. 2968s (T -0.015 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 6%. (T -0.017 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 18%. (T -0.034 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 31%. (T -0.032 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 43%. (T -0.022 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 56%. (T -0.017 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 68%. (T -0.013 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 81%. (T -0.005 seconds) ETA: Fri Mar 15 09:11:59 2024 2968s 93%. 2968s Anchor extraction completed in: 0.067 seconds 2968s Total anchors: 0 2968s Anchor extraction + merge time: 0.068 seconds 2968s Total processing time: 5.759 seconds 2968s Writing anchors... 2968s Total seeds used in anchors: 16 2968s Hash performance: 2968s Keys used: 16 out of 16 possible (100.00%). 2968s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2968s Average pigeons per pigeon hole: 1 2968s Writing 16 repeats...Output writing finished in: 0.092 seconds 2968s Total time: 5.851 seconds 2968s Murasaki finished! 2968s PASSED MURASAKI 2968s 2968s Testing Genepare on NZ_GG705120.fna 2968s 18446744073709551255 2968s PASSED GENEPARSE 2968s 2969s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2969s Testing mbfa on NZ_GG705120.fna 2969s PASSED mbfa 2970s 2970s Test Murasaki on NZ_GG705121.fna 2970s Verbosity level is: 0 2970s Writing to: output/test 2970s Pattern is: 101 2970s Max usable hash bits: 27 2970s Hit filter is: 0 2970s Hash table type is: EcoHash 2970s Hashing every: 1 base 2970s Histogram detail is: 0 2970s Hashing function is: 3 2970s Collision profiling is: disabled 2970s Repeats are: unmasked 2970s Mergefilter is at: 100 2970s Random seed: 1710493921 (automatic) 2970s Bitscore output: on 2970s Leave status records: no 2970s Join neighbors is: off 2970s Target memory is: 1.28 GB 2970s Retain members is: true 2970s Store repeatmap? yes 2970s Reverse complement data is generated on the fly 2970s Rifts allowed: 0 2970s Fuzzy Extension: yes 2970s Score by minimum pair: yes 2970s Gapped anchors: no 2970s Large sequence support is: enabled => seqpos is 8 bytes 2970s Murasaki version 1.68.6 (LARGESEQ) 2970s Loading NZ_GG705121.fna 2970s Read 615bp (615 bytesp) in 0.008 seconds (70.7 KBp/s) 2970s Done with forward strand (615bp). Preparing reverse complement... 2970s <-> Reversing metdata. 2970s Done. 2970s Seq NZ_GG705121.fna loaded. 615 bytes 2970s Loading NZ_GG705121.gbk 2970s Read 615bp (615 bytesp) in 0.006 seconds (106.1 KBp/s) 2970s Done with forward strand (615bp). Preparing reverse complement... 2970s <-> Reversing metdata. 2970s Done. 2970s Seq NZ_GG705121.gbk loaded. 615 bytes 2970s Sequence loading took: 0.028 seconds 2970s Forward frequencies: A:33.8211% C:18.374% G:17.8862% T:29.9187% 2970s Global base frequencies: A/T:63.7398% C/G:36.2602% 2970s Pat: 3 bases long with weight 2 2970s 1 101 2970s Computing hash parameters... 2970s Using 4 hashbits 2970s 0%......... (T -2.962 seconds) ETA: Fri Mar 15 09:12:04 2024 2971s 10%......... (T -3.895 seconds) ETA: Fri Mar 15 09:12:05 2024 2971s 20%......... (T -3.505 seconds) ETA: Fri Mar 15 09:12:06 2024 2972s 30%......... (T -2.930 seconds) ETA: Fri Mar 15 09:12:06 2024 2972s 40%......... (T -2.171 seconds) ETA: Fri Mar 15 09:12:05 2024 2972s 50%......... (T -1.633 seconds) ETA: Fri Mar 15 09:12:05 2024 2972s 60%......... (T -1.166 seconds) ETA: Fri Mar 15 09:12:05 2024 2973s 70%......... (T -0.785 seconds) ETA: Fri Mar 15 09:12:05 2024 2973s 80%......... (T -0.371 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 91%........ 2974s Acceptable hash function found after 1000 cycles. 2974s Best uses 2/2 bases and has 0 empties from 2 inputs. 2974s Score: 0.96875 (cf. worst: -4.51562) 2974s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2974s Total correlation penalty: 0 2974s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2974s 10 2974s == 2974s w[ 0]>>29: -.C 2974s w[ 0]>>30: A.- 2974s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2974s Ecolist (optimistic): Expcted entries per list: 8 2974s Ecolist (optimistic): Minimum chunks per list: 4 2974s Would take minimum 256.000000 bytes to make perfect hash. 2974s Hashing 2.40 KB of sequence requires: 2974s ~ linear (in seq length) hashing cost of 3.90 KB 2974s ~ linear (in seq length) expected anchor cost of 57.66 KB 2974s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2974s Expected memory usage (without anchors): 4.15 KB 2974s Expected memory usage (with anchors): 61.80 KB 2974s Hash parameters computed in 4.095 seconds 2974s Creating storage structures: 16 entries in 256 bytes space. 2974s Storage structures created in: 0.006 seconds 2974s 2974s Hashing NZ_GG705121.fna forwards 2974s 0%........ (T -0.043 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 10%........ (T -0.021 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 20%........ (T -0.013 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 30%........ (T -0.009 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 40%........ (T -0.006 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 50%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 60%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 70%........ (T -0.002 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 80%........ (T -0.001 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 91%....... 2974s Hashing NZ_GG705121.fna backwards 2974s 0%........ (T -0.042 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 10%........ (T -0.021 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 20%........ (T -0.014 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 30%........ (T -0.010 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 40%........ (T -0.007 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 50%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 60%........ (T -0.004 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 70%........ (T -0.002 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 80%........ (T -0.001 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 91%....... 2974s Hashing NZ_GG705121.gbk forwards 2974s 0%........ (T -0.095 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 10%........ (T -0.046 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 20%........ (T -0.028 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 30%........ (T -0.018 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 40%........ (T -0.038 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 50%........ (T -0.025 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 60%........ (T -0.017 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 70%........ (T -0.010 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 80%........ (T -0.004 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 91%....... 2974s Hashing NZ_GG705121.gbk backwards 2974s 0%........ (T -0.094 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 10%........ (T -0.044 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 20%........ (T -0.026 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 30%........ (T -0.018 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 40%........ (T -0.020 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 50%........ (T -0.039 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 60%........ (T -0.025 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 70%........ (T -0.015 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 80%........ (T -0.006 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 91%....... 2974s Initial hashing took: 0.186 seconds 2974s Extracting anchors from hash-space. 2974s (T -0.009 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 6%. (T -0.013 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 18%. (T -0.009 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 31%. (T -0.024 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 43%. (T -0.025 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 56%. (T -0.019 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 68%. (T -0.011 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 81%. (T -0.004 seconds) ETA: Fri Mar 15 09:12:05 2024 2974s 93%. 2974s Anchor extraction completed in: 0.049 seconds 2974s Total anchors: 0 2974s Anchor extraction + merge time: 0.049 seconds 2974s Total processing time: 4.372 seconds 2974s Writing anchors... 2974s Total seeds used in anchors: 16 2974s Hash performance: 2974s Keys used: 16 out of 16 possible (100.00%). 2974s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2974s Average pigeons per pigeon hole: 1 2974s Writing 16 repeats...Output writing finished in: 0.035 seconds 2974s Total time: 4.407 seconds 2974s Murasaki finished! 2974s PASSED MURASAKI 2974s 2974s Testing Genepare on NZ_GG705121.fna 2974s 18446744073709551232 2974s PASSED GENEPARSE 2974s 2975s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2975s Testing mbfa on NZ_GG705121.fna 2975s PASSED mbfa 2975s 2975s Test Murasaki on NZ_GG705122.fna 2975s Verbosity level is: 0 2975s Writing to: output/test 2975s Pattern is: 101 2975s Max usable hash bits: 27 2975s Hit filter is: 0 2975s Hash table type is: EcoHash 2975s Hashing every: 1 base 2975s Histogram detail is: 0 2975s Hashing function is: 3 2975s Collision profiling is: disabled 2975s Repeats are: unmasked 2975s Mergefilter is at: 100 2975s Random seed: 1710493926 (automatic) 2975s Bitscore output: on 2975s Leave status records: no 2975s Join neighbors is: off 2975s Target memory is: 1.28 GB 2975s Retain members is: true 2975s Store repeatmap? yes 2975s Reverse complement data is generated on the fly 2975s Rifts allowed: 0 2975s Fuzzy Extension: yes 2975s Score by minimum pair: yes 2975s Gapped anchors: no 2975s Large sequence support is: enabled => seqpos is 8 bytes 2975s Murasaki version 1.68.6 (LARGESEQ) 2975s Loading NZ_GG705122.fna 2975s Read 603bp (603 bytesp) in 0.009 seconds (68.7 KBp/s) 2975s Done with forward strand (603bp). Preparing reverse complement... 2975s <-> Reversing metdata. 2975s Done. 2975s Seq NZ_GG705122.fna loaded. 603 bytes 2975s Loading NZ_GG705122.gbk 2975s Read 603bp (603 bytesp) in 0.005 seconds (113.2 KBp/s) 2975s Done with forward strand (603bp). Preparing reverse complement... 2975s <-> Reversing metdata. 2975s Done. 2975s Seq NZ_GG705122.gbk loaded. 603 bytes 2975s Sequence loading took: 0.033 seconds 2975s Forward frequencies: A:30.8458% C:18.2421% G:20.8955% T:30.0166% 2975s Global base frequencies: A/T:60.8624% C/G:39.1376% 2975s Pat: 3 bases long with weight 2 2975s 1 101 2975s Computing hash parameters... 2975s Using 4 hashbits 2976s 0%......... (T -6.096 seconds) ETA: Fri Mar 15 09:12:13 2024 2977s 10%......... (T -4.843 seconds) ETA: Fri Mar 15 09:12:13 2024 2977s 20%......... (T -3.910 seconds) ETA: Fri Mar 15 09:12:12 2024 2978s 30%......... (T -3.211 seconds) ETA: Fri Mar 15 09:12:12 2024 2978s 40%......... (T -2.638 seconds) ETA: Fri Mar 15 09:12:12 2024 2978s 50%......... (T -1.915 seconds) ETA: Fri Mar 15 09:12:11 2024 2979s 60%......... (T -1.329 seconds) ETA: Fri Mar 15 09:12:11 2024 2979s 70%......... (T -0.959 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 80%......... (T -0.434 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 91%........ 2980s Acceptable hash function found after 1000 cycles. 2980s Best uses 2/2 bases and has 0 empties from 2 inputs. 2980s Score: 0.96875 (cf. worst: -4.51562) 2980s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2980s Total correlation penalty: 0 2980s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2980s 10 2980s == 2980s w[ 0]>>29: -.C 2980s w[ 0]>>30: A.- 2980s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2980s Ecolist (optimistic): Expcted entries per list: 8 2980s Ecolist (optimistic): Minimum chunks per list: 4 2980s Would take minimum 256.000000 bytes to make perfect hash. 2980s Hashing 2.36 KB of sequence requires: 2980s ~ linear (in seq length) hashing cost of 3.82 KB 2980s ~ linear (in seq length) expected anchor cost of 56.53 KB 2980s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2980s Expected memory usage (without anchors): 4.07 KB 2980s Expected memory usage (with anchors): 60.60 KB 2980s Hash parameters computed in 4.959 seconds 2980s Creating storage structures: 16 entries in 256 bytes space. 2980s Storage structures created in: 0.005 seconds 2980s 2980s Hashing NZ_GG705122.fna forwards 2980s 0%........ (T -0.150 seconds) ETA: Fri Mar 15 09:12:12 2024 2980s 10%........ (T -0.069 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 20%........ (T -0.041 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 30%........ (T -0.027 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 40%........ (T -0.018 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 50%........ (T -0.012 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 60%........ (T -0.008 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 71%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 81%........ (T -0.002 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 91%....... 2980s Hashing NZ_GG705122.fna backwards 2980s 0%........ (T -0.011 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 10%........ (T -0.006 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 20%........ (T -0.004 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 30%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 40%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 50%........ (T -0.002 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 60%........ (T -0.001 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 71%........ (T -0.001 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 81%........ (T -0.000 seconds) ETA: Fri Mar 15 09:12:11 2024 2980s 91%....... 2980s Hashing NZ_GG705122.gbk forwards 2981s 0%........ (T -0.228 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 10%........ (T -0.103 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 20%........ (T -0.061 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 30%........ (T -0.040 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 40%........ (T -0.027 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 50%........ (T -0.018 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 60%........ (T -0.011 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 71%........ (T -0.007 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 81%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 91%....... 2981s Hashing NZ_GG705122.gbk backwards 2981s 0%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 10%........ (T -0.008 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 20%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 30%........ (T -0.004 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 40%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 50%........ (T -0.002 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 60%........ (T -0.002 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 71%........ (T -0.001 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 81%........ (T -0.000 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 91%....... 2981s Initial hashing took: 0.089 seconds 2981s Extracting anchors from hash-space. 2981s (T -0.016 seconds) ETA: Fri Mar 15 09:12:11 2024 2981s 6%. (T -0.114 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 18%. (T -0.072 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 31%. (T -0.046 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 43%. (T -0.041 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 56%. (T -0.026 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 68%. (T -0.013 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 81%. (T -0.004 seconds) ETA: Fri Mar 15 09:12:12 2024 2981s 93%. 2981s Anchor extraction completed in: 0.062 seconds 2981s Total anchors: 0 2981s Anchor extraction + merge time: 0.063 seconds 2981s Total processing time: 5.150 seconds 2981s Writing anchors... 2981s Total seeds used in anchors: 16 2981s Hash performance: 2981s Keys used: 16 out of 16 possible (100.00%). 2981s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2981s Average pigeons per pigeon hole: 1 2981s Writing 16 repeats...Output writing finished in: 0.082 seconds 2981s Total time: 5.232 seconds 2981s Murasaki finished! 2981s PASSED MURASAKI 2981s 2981s Testing Genepare on NZ_GG705122.fna 2981s 18446744073709551220 2981s PASSED GENEPARSE 2981s 2982s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2983s Testing mbfa on NZ_GG705122.fna 2983s PASSED mbfa 2983s 2983s Test Murasaki on NZ_GG705123.fna 2983s Verbosity level is: 0 2983s Writing to: output/test 2983s Pattern is: 101 2983s Max usable hash bits: 27 2983s Hit filter is: 0 2983s Hash table type is: EcoHash 2983s Hashing every: 1 base 2983s Histogram detail is: 0 2983s Hashing function is: 3 2983s Collision profiling is: disabled 2983s Repeats are: unmasked 2983s Mergefilter is at: 100 2983s Random seed: 1710493934 (automatic) 2983s Bitscore output: on 2983s Leave status records: no 2983s Join neighbors is: off 2983s Target memory is: 1.28 GB 2983s Retain members is: true 2983s Store repeatmap? yes 2983s Reverse complement data is generated on the fly 2983s Rifts allowed: 0 2983s Fuzzy Extension: yes 2983s Score by minimum pair: yes 2983s Gapped anchors: no 2983s Large sequence support is: enabled => seqpos is 8 bytes 2983s Murasaki version 1.68.6 (LARGESEQ) 2983s Loading NZ_GG705123.fna 2983s Read 603bp (603 bytesp) in 0.007 seconds (88.6 KBp/s) 2983s Done with forward strand (603bp). Preparing reverse complement... 2983s <-> Reversing metdata. 2983s Done. 2983s Seq NZ_GG705123.fna loaded. 603 bytes 2983s Loading NZ_GG705123.gbk 2983s Read 603bp (603 bytesp) in 0.024 seconds (24.4 KBp/s) 2983s Done with forward strand (603bp). Preparing reverse complement... 2983s <-> Reversing metdata. 2983s Done. 2983s Seq NZ_GG705123.gbk loaded. 603 bytes 2983s Sequence loading took: 0.056 seconds 2983s Forward frequencies: A:30.6799% C:18.0763% G:20.5638% T:30.6799% 2983s Global base frequencies: A/T:61.3599% C/G:38.6401% 2983s Pat: 3 bases long with weight 2 2983s 1 101 2983s Computing hash parameters... 2983s Using 4 hashbits 2984s 0%......... (T -6.344 seconds) ETA: Fri Mar 15 09:12:21 2024 2985s 10%......... (T -5.438 seconds) ETA: Fri Mar 15 09:12:21 2024 2985s 20%......... (T -4.682 seconds) ETA: Fri Mar 15 09:12:21 2024 2986s 30%......... (T -4.298 seconds) ETA: Fri Mar 15 09:12:21 2024 2987s 40%......... (T -3.341 seconds) ETA: Fri Mar 15 09:12:21 2024 2987s 50%......... (T -2.706 seconds) ETA: Fri Mar 15 09:12:21 2024 2988s 60%......... (T -2.157 seconds) ETA: Fri Mar 15 09:12:21 2024 2989s 70%......... (T -1.343 seconds) ETA: Fri Mar 15 09:12:21 2024 2989s 80%......... (T -0.593 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 91%........ 2990s Acceptable hash function found after 1000 cycles. 2990s Best uses 2/2 bases and has 0 empties from 2 inputs. 2990s Score: 0.96875 (cf. worst: -4.51562) 2990s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2990s Total correlation penalty: 0 2990s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2990s 10 2990s == 2990s w[ 0]>>29: -.C 2990s w[ 0]>>30: A.- 2990s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2990s Ecolist (optimistic): Expcted entries per list: 8 2990s Ecolist (optimistic): Minimum chunks per list: 4 2990s Would take minimum 256.000000 bytes to make perfect hash. 2990s Hashing 2.36 KB of sequence requires: 2990s ~ linear (in seq length) hashing cost of 3.82 KB 2990s ~ linear (in seq length) expected anchor cost of 56.53 KB 2990s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2990s Expected memory usage (without anchors): 4.07 KB 2990s Expected memory usage (with anchors): 60.60 KB 2990s Hash parameters computed in 6.720 seconds 2990s Creating storage structures: 16 entries in 256 bytes space. 2990s Storage structures created in: 0.024 seconds 2990s 2990s Hashing NZ_GG705123.fna forwards 2990s 0%........ (T -0.091 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 10%........ (T -0.042 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 20%........ (T -0.027 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 30%........ (T -0.018 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 40%........ (T -0.012 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 50%........ (T -0.009 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 60%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 71%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 81%........ (T -0.002 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 91%....... 2990s Hashing NZ_GG705123.fna backwards 2990s 0%........ (T -0.103 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 10%........ (T -0.071 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 20%........ (T -0.042 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 30%........ (T -0.028 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 40%........ (T -0.019 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 50%........ (T -0.013 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 60%........ (T -0.008 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 71%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 81%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 91%....... 2990s Hashing NZ_GG705123.gbk forwards 2990s 0%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 10%........ (T -0.005 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 20%........ (T -0.004 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 30%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 40%........ (T -0.004 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 50%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 60%........ (T -0.002 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 71%........ (T -0.001 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 81%........ (T -0.001 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 91%....... 2990s Hashing NZ_GG705123.gbk backwards 2990s 0%........ (T -0.138 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 10%........ (T -0.068 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 20%........ (T -0.048 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 30%........ (T -0.032 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 40%........ (T -0.021 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 50%........ (T -0.016 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 60%........ (T -0.012 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 71%........ (T -0.008 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 81%........ (T -0.003 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 91%....... 2990s Initial hashing took: 0.138 seconds 2990s Extracting anchors from hash-space. 2990s (T -0.014 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 6%. (T -0.010 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 18%. (T -0.019 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 31%. (T -0.021 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 43%. (T -0.032 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 56%. (T -0.025 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 68%. (T -0.014 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 81%. (T -0.005 seconds) ETA: Fri Mar 15 09:12:21 2024 2990s 93%. 2990s Anchor extraction completed in: 0.076 seconds 2990s Total anchors: 0 2990s Anchor extraction + merge time: 0.079 seconds 2990s Total processing time: 7.027 seconds 2990s Writing anchors... 2990s Total seeds used in anchors: 16 2990s Hash performance: 2990s Keys used: 16 out of 16 possible (100.00%). 2990s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 2990s Average pigeons per pigeon hole: 1 2990s Writing 16 repeats...Output writing finished in: 0.062 seconds 2990s Total time: 7.088 seconds 2990s Murasaki finished! 2990s PASSED MURASAKI 2990s 2990s Testing Genepare on NZ_GG705123.fna 2990s 18446744073709551220 2990s PASSED GENEPARSE 2990s 2992s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2992s Testing mbfa on NZ_GG705123.fna 2992s PASSED mbfa 2992s 2992s Test Murasaki on NZ_GG705124.fna 2992s Verbosity level is: 0 2992s Writing to: output/test 2992s Pattern is: 101 2992s Max usable hash bits: 27 2992s Hit filter is: 0 2992s Hash table type is: EcoHash 2992s Hashing every: 1 base 2992s Histogram detail is: 0 2992s Hashing function is: 3 2992s Collision profiling is: disabled 2992s Repeats are: unmasked 2992s Mergefilter is at: 100 2992s Random seed: 1710493943 (automatic) 2992s Bitscore output: on 2992s Leave status records: no 2992s Join neighbors is: off 2992s Target memory is: 1.28 GB 2992s Retain members is: true 2992s Store repeatmap? yes 2992s Reverse complement data is generated on the fly 2992s Rifts allowed: 0 2992s Fuzzy Extension: yes 2992s Score by minimum pair: yes 2992s Gapped anchors: no 2992s Large sequence support is: enabled => seqpos is 8 bytes 2992s Murasaki version 1.68.6 (LARGESEQ) 2992s Loading NZ_GG705124.fna 2992s Read 597bp (597 bytesp) in 0.029 seconds (20.3 KBp/s) 2992s Done with forward strand (597bp). Preparing reverse complement... 2992s <-> Reversing metdata. 2992s Done. 2992s Seq NZ_GG705124.fna loaded. 597 bytes 2992s Loading NZ_GG705124.gbk 2992s Read 597bp (597 bytesp) in 0.007 seconds (88.8 KBp/s) 2992s Done with forward strand (597bp). Preparing reverse complement... 2992s <-> Reversing metdata. 2992s Done. 2992s Seq NZ_GG705124.gbk loaded. 597 bytes 2992s Sequence loading took: 0.095 seconds 2992s Forward frequencies: A:38.6935% C:10.8878% G:20.268% T:30.1508% 2992s Global base frequencies: A/T:68.8442% C/G:31.1558% 2992s Pat: 3 bases long with weight 2 2992s 1 101 2992s Computing hash parameters... 2992s Using 4 hashbits 2993s 0%......... (T -5.983 seconds) ETA: Fri Mar 15 09:12:30 2024 2993s 10%......... (T -4.074 seconds) ETA: Fri Mar 15 09:12:28 2024 2994s 20%......... (T -4.146 seconds) ETA: Fri Mar 15 09:12:29 2024 2995s 30%......... (T -3.369 seconds) ETA: Fri Mar 15 09:12:29 2024 2995s 40%......... (T -2.938 seconds) ETA: Fri Mar 15 09:12:29 2024 2996s 50%......... (T -2.329 seconds) ETA: Fri Mar 15 09:12:29 2024 2997s 60%......... (T -1.924 seconds) ETA: Fri Mar 15 09:12:30 2024 2998s 70%......... (T -1.357 seconds) ETA: Fri Mar 15 09:12:30 2024 2998s 80%......... (T -0.585 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 91%........ 2999s Acceptable hash function found after 1000 cycles. 2999s Best uses 2/2 bases and has 0 empties from 2 inputs. 2999s Score: 0.96875 (cf. worst: -4.51562) 2999s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 2999s Total correlation penalty: 0 2999s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 2999s 10 2999s == 2999s w[ 0]>>29: -.C 2999s w[ 0]>>30: A.- 2999s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 2999s Ecolist (optimistic): Expcted entries per list: 8 2999s Ecolist (optimistic): Minimum chunks per list: 4 2999s Would take minimum 256.000000 bytes to make perfect hash. 2999s Hashing 2.33 KB of sequence requires: 2999s ~ linear (in seq length) hashing cost of 3.78 KB 2999s ~ linear (in seq length) expected anchor cost of 55.97 KB 2999s Initial hash table uses: 256 bytes (4 bits, 16 entries) 2999s Expected memory usage (without anchors): 4.03 KB 2999s Expected memory usage (with anchors): 60.00 KB 2999s Hash parameters computed in 7.024 seconds 2999s Creating storage structures: 16 entries in 256 bytes space. 2999s Storage structures created in: 0.030 seconds 2999s 2999s Hashing NZ_GG705124.fna forwards 2999s 0%......... (T -0.141 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 10%......... (T -0.065 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 20%......... (T -0.038 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 30%......... (T -0.025 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 90%........ 2999s Hashing NZ_GG705124.fna backwards 2999s 0%......... (T -0.134 seconds) ETA: Fri Mar 15 09:12:31 2024 2999s 10%......... (T -0.163 seconds) ETA: Fri Mar 15 09:12:31 2024 2999s 20%......... (T -0.141 seconds) ETA: Fri Mar 15 09:12:31 2024 2999s 30%......... (T -0.091 seconds) ETA: Fri Mar 15 09:12:31 2024 2999s 40%......... (T -0.061 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 50%......... (T -0.041 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 60%......... (T -0.027 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 70%......... (T -0.016 seconds) ETA: Fri Mar 15 09:12:30 2024 2999s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 90%........ 3000s Hashing NZ_GG705124.gbk forwards 3000s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 10%......... (T -0.004 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 20%......... (T -0.003 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 30%......... (T -0.003 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 40%......... (T -0.010 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 50%......... (T -0.016 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 60%......... (T -0.011 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:12:30 2024 3000s 90%........ 3000s Hashing NZ_GG705124.gbk backwards 3000s 0%......... (T -0.032 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 10%......... (T -0.026 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 20%......... (T -0.141 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 30%......... (T -0.092 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 40%......... (T -0.061 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 50%......... (T -0.041 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 60%......... (T -0.027 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 70%......... (T -0.016 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 80%......... (T -0.007 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 90%........ 3000s Initial hashing took: 0.312 seconds 3000s Extracting anchors from hash-space. 3000s (T -0.029 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 6%. (T -0.168 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 18%. (T -0.154 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 31%. (T -0.093 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 43%. (T -0.057 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 56%. (T -0.034 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 68%. (T -0.027 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 81%. (T -0.010 seconds) ETA: Fri Mar 15 09:12:31 2024 3000s 93%. 3000s Anchor extraction completed in: 0.152 seconds 3000s Total anchors: 0 3000s Anchor extraction + merge time: 0.152 seconds 3000s Total processing time: 7.633 seconds 3000s Writing anchors... 3000s Total seeds used in anchors: 16 3000s Hash performance: 3000s Keys used: 16 out of 16 possible (100.00%). 3000s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 3000s Average pigeons per pigeon hole: 1 3000s Writing 16 repeats...Output writing finished in: 0.146 seconds 3000s Total time: 7.779 seconds 3000s Murasaki finished! 3000s PASSED MURASAKI 3000s 3000s Testing Genepare on NZ_GG705124.fna 3000s 18446744073709551214 3000s PASSED GENEPARSE 3000s 3003s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3003s Testing mbfa on NZ_GG705124.fna 3004s PASSED mbfa 3004s 3004s Test Murasaki on NZ_GG705125.fna 3004s Verbosity level is: 0 3004s Writing to: output/test 3004s Pattern is: 101 3004s Max usable hash bits: 27 3004s Hit filter is: 0 3004s Hash table type is: EcoHash 3004s Hashing every: 1 base 3004s Histogram detail is: 0 3004s Hashing function is: 3 3004s Collision profiling is: disabled 3004s Repeats are: unmasked 3004s Mergefilter is at: 100 3004s Random seed: 1710493955 (automatic) 3004s Bitscore output: on 3004s Leave status records: no 3004s Join neighbors is: off 3004s Target memory is: 1.28 GB 3004s Retain members is: true 3004s Store repeatmap? yes 3004s Reverse complement data is generated on the fly 3004s Rifts allowed: 0 3004s Fuzzy Extension: yes 3004s Score by minimum pair: yes 3004s Gapped anchors: no 3004s Large sequence support is: enabled => seqpos is 8 bytes 3004s Murasaki version 1.68.6 (LARGESEQ) 3004s Loading NZ_GG705125.fna 3004s Read 583bp (583 bytesp) in 0.006 seconds (93.9 KBp/s) 3004s Done with forward strand (583bp). Preparing reverse complement... 3004s <-> Reversing metdata. 3004s Done. 3004s Seq NZ_GG705125.fna loaded. 583 bytes 3004s Loading NZ_GG705125.gbk 3004s Read 583bp (583 bytesp) in 0.036 seconds (15.6 KBp/s) 3004s Done with forward strand (583bp). Preparing reverse complement... 3004s <-> Reversing metdata. 3004s Done. 3004s Seq NZ_GG705125.gbk loaded. 583 bytes 3004s Sequence loading took: 0.071 seconds 3004s Forward frequencies: A:27.7873% C:20.5832% G:18.8679% T:32.7616% 3004s Global base frequencies: A/T:60.5489% C/G:39.4511% 3004s Pat: 3 bases long with weight 2 3004s 1 101 3004s Computing hash parameters... 3004s Using 4 hashbits 3005s 0%......... (T -7.699 seconds) ETA: Fri Mar 15 09:12:44 2024 3005s 10%......... (T -5.670 seconds) ETA: Fri Mar 15 09:12:42 2024 3006s 20%......... (T -4.597 seconds) ETA: Fri Mar 15 09:12:42 2024 3006s 30%......... (T -3.415 seconds) ETA: Fri Mar 15 09:12:41 2024 3007s 40%......... (T -2.791 seconds) ETA: Fri Mar 15 09:12:41 2024 3007s 50%......... (T -2.076 seconds) ETA: Fri Mar 15 09:12:40 2024 3008s 60%......... (T -1.573 seconds) ETA: Fri Mar 15 09:12:40 2024 3008s 70%......... (T -1.065 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 80%......... (T -0.473 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 91%........ 3009s Acceptable hash function found after 1000 cycles. 3009s Best uses 2/2 bases and has 0 empties from 2 inputs. 3009s Score: 0.96875 (cf. worst: -4.51562) 3009s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 3009s Total correlation penalty: 0 3009s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 3009s 10 3009s == 3009s w[ 0]>>29: -.C 3009s w[ 0]>>30: A.- 3009s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 3009s Ecolist (optimistic): Expcted entries per list: 8 3009s Ecolist (optimistic): Minimum chunks per list: 4 3009s Would take minimum 256.000000 bytes to make perfect hash. 3009s Hashing 2.28 KB of sequence requires: 3009s ~ linear (in seq length) hashing cost of 3.69 KB 3009s ~ linear (in seq length) expected anchor cost of 54.66 KB 3009s Initial hash table uses: 256 bytes (4 bits, 16 entries) 3009s Expected memory usage (without anchors): 3.94 KB 3009s Expected memory usage (with anchors): 58.60 KB 3009s Hash parameters computed in 5.067 seconds 3009s Creating storage structures: 16 entries in 256 bytes space. 3009s Storage structures created in: 0.009 seconds 3009s 3009s Hashing NZ_GG705125.fna forwards 3009s 0%......... (T -0.040 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 10%......... (T -0.020 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 20%......... (T -0.012 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 30%......... (T -0.008 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 40%......... (T -0.006 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 60%......... (T -0.003 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 71%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 81%......... (T -0.001 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 91%........ 3009s Hashing NZ_GG705125.fna backwards 3009s 0%......... (T -0.034 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 10%......... (T -0.017 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 20%......... (T -0.011 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 30%......... (T -0.007 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 40%......... (T -0.005 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 50%......... (T -0.004 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 60%......... (T -0.003 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 71%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 81%......... (T -0.001 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 91%........ 3009s Hashing NZ_GG705125.gbk forwards 3009s 0%......... (T -0.014 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 10%......... (T -0.008 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 20%......... (T -0.005 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 30%......... (T -0.004 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 50%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 60%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 71%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 81%......... (T -0.001 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 91%........ 3009s Hashing NZ_GG705125.gbk backwards 3009s 0%......... (T -0.049 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 10%......... (T -0.024 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 20%......... (T -0.015 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 30%......... (T -0.014 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 40%......... (T -0.010 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 50%......... (T -0.007 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 60%......... (T -0.005 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 71%......... (T -0.004 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 81%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 91%........ 3009s Initial hashing took: 0.069 seconds 3009s Extracting anchors from hash-space. 3009s (T -0.008 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 6%. (T -0.052 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 18%. (T -0.042 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 31%. (T -0.036 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 43%. (T -0.025 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 56%. (T -0.020 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 68%. (T -0.010 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 81%. (T -0.003 seconds) ETA: Fri Mar 15 09:12:40 2024 3009s 93%. 3009s Anchor extraction completed in: 0.056 seconds 3009s Total anchors: 0 3009s Anchor extraction + merge time: 0.058 seconds 3009s Total processing time: 5.279 seconds 3009s Writing anchors... 3009s Total seeds used in anchors: 16 3009s Hash performance: 3009s Keys used: 16 out of 16 possible (100.00%). 3009s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 3009s Average pigeons per pigeon hole: 1 3009s Writing 16 repeats...Output writing finished in: 0.035 seconds 3009s Total time: 5.315 seconds 3009s Murasaki finished! 3009s PASSED MURASAKI 3009s 3009s Testing Genepare on NZ_GG705125.fna 3009s 18446744073709551200 3009s PASSED GENEPARSE 3009s 3010s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3010s Testing mbfa on NZ_GG705125.fna 3010s PASSED mbfa 3010s 3010s Test Murasaki on NZ_GG705126.fna 3010s Verbosity level is: 0 3010s Writing to: output/test 3010s Pattern is: 101 3010s Max usable hash bits: 27 3010s Hit filter is: 0 3010s Hash table type is: EcoHash 3010s Hashing every: 1 base 3010s Histogram detail is: 0 3010s Hashing function is: 3 3010s Collision profiling is: disabled 3010s Repeats are: unmasked 3010s Mergefilter is at: 100 3010s Random seed: 1710493961 (automatic) 3010s Bitscore output: on 3010s Leave status records: no 3010s Join neighbors is: off 3010s Target memory is: 1.28 GB 3010s Retain members is: true 3010s Store repeatmap? yes 3010s Reverse complement data is generated on the fly 3010s Rifts allowed: 0 3010s Fuzzy Extension: yes 3010s Score by minimum pair: yes 3010s Gapped anchors: no 3010s Large sequence support is: enabled => seqpos is 8 bytes 3010s Murasaki version 1.68.6 (LARGESEQ) 3010s Loading NZ_GG705126.fna 3010s Read 559bp (559 bytesp) in 0.014 seconds (39.0 KBp/s) 3010s Done with forward strand (559bp). Preparing reverse complement... 3010s <-> Reversing metdata. 3010s Done. 3010s Seq NZ_GG705126.fna loaded. 559 bytes 3010s Loading NZ_GG705126.gbk 3010s Read 559bp (559 bytesp) in 0.022 seconds (25.2 KBp/s) 3010s Done with forward strand (559bp). Preparing reverse complement... 3010s <-> Reversing metdata. 3010s Done. 3010s Seq NZ_GG705126.gbk loaded. 559 bytes 3010s Sequence loading took: 0.061 seconds 3010s Forward frequencies: A:37.3882% C:13.9535% G:15.2057% T:33.4526% 3010s Global base frequencies: A/T:70.8408% C/G:29.1592% 3011s Pat: 3 bases long with weight 2 3011s 1 101 3011s Computing hash parameters... 3011s Using 4 hashbits 3011s 0%......... (T -4.578 seconds) ETA: Fri Mar 15 09:12:47 2024 3012s 10%......... (T -4.116 seconds) ETA: Fri Mar 15 09:12:47 2024 3012s 20%......... (T -4.399 seconds) ETA: Fri Mar 15 09:12:48 2024 3013s 30%......... (T -3.942 seconds) ETA: Fri Mar 15 09:12:48 2024 3014s 40%......... (T -3.737 seconds) ETA: Fri Mar 15 09:12:49 2024 3015s 50%......... (T -3.088 seconds) ETA: Fri Mar 15 09:12:49 2024 3016s 60%......... (T -2.384 seconds) ETA: Fri Mar 15 09:12:49 2024 3017s 70%......... (T -1.648 seconds) ETA: Fri Mar 15 09:12:50 2024 3018s 80%......... (T -0.752 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 91%........ 3019s Acceptable hash function found after 1000 cycles. 3019s Best uses 2/2 bases and has 0 empties from 2 inputs. 3019s Score: 0.96875 (cf. worst: -4.51562) 3019s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 3019s Total correlation penalty: 0 3019s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 3019s 10 3019s == 3019s w[ 0]>>29: -.C 3019s w[ 0]>>30: A.- 3019s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 3019s Ecolist (optimistic): Expcted entries per list: 8 3019s Ecolist (optimistic): Minimum chunks per list: 4 3019s Would take minimum 256.000000 bytes to make perfect hash. 3019s Hashing 2.18 KB of sequence requires: 3019s ~ linear (in seq length) hashing cost of 3.54 KB 3019s ~ linear (in seq length) expected anchor cost of 52.41 KB 3019s Initial hash table uses: 256 bytes (4 bits, 16 entries) 3019s Expected memory usage (without anchors): 3.79 KB 3019s Expected memory usage (with anchors): 56.20 KB 3019s Hash parameters computed in 8.445 seconds 3019s Creating storage structures: 16 entries in 256 bytes space. 3019s Storage structures created in: 0.047 seconds 3019s 3019s Hashing NZ_GG705126.fna forwards 3019s 0%......... (T -0.147 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 10%......... (T -0.067 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 20%......... (T -0.040 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 30%......... (T -0.026 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 40%......... (T -0.018 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 50%......... (T -0.012 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 60%......... (T -0.008 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 90%........ 3019s Hashing NZ_GG705126.fna backwards 3019s 0%......... (T -0.003 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 10%......... (T -0.003 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 20%......... (T -0.065 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 30%......... (T -0.047 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 40%......... (T -0.056 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 50%......... (T -0.038 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 60%......... (T -0.025 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 90%........ 3019s Hashing NZ_GG705126.gbk forwards 3019s 0%......... (T -0.128 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 10%......... (T -0.059 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 20%......... (T -0.035 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 30%......... (T -0.023 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 40%......... (T -0.016 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 70%......... (T -0.005 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 90%........ 3019s Hashing NZ_GG705126.gbk backwards 3019s 0%......... (T -0.004 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 10%......... (T -0.055 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 20%......... (T -0.033 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 30%......... (T -0.022 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 40%......... (T -0.015 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 50%......... (T -0.010 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 90%........ 3019s Initial hashing took: 0.221 seconds 3019s Extracting anchors from hash-space. 3019s (T -0.435 seconds) ETA: Fri Mar 15 09:12:51 2024 3019s 6%. (T -0.181 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 18%. (T -0.093 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 31%. (T -0.059 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 43%. (T -0.068 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 56%. (T -0.049 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 68%. (T -0.025 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 81%. (T -0.008 seconds) ETA: Fri Mar 15 09:12:50 2024 3019s 93%. 3019s Anchor extraction completed in: 0.110 seconds 3019s Total anchors: 0 3019s Anchor extraction + merge time: 0.110 seconds 3019s Total processing time: 8.939 seconds 3019s Writing anchors... 3019s Total seeds used in anchors: 16 3019s Hash performance: 3019s Keys used: 16 out of 16 possible (100.00%). 3019s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 3019s Average pigeons per pigeon hole: 1 3019s Writing 16 repeats...Output writing finished in: 0.123 seconds 3019s Total time: 9.063 seconds 3020s Murasaki finished! 3020s PASSED MURASAKI 3020s 3020s Testing Genepare on NZ_GG705126.fna 3020s 18446744073709551176 3020s PASSED GENEPARSE 3020s 3022s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3022s Testing mbfa on NZ_GG705126.fna 3022s PASSED mbfa 3022s 3022s Test Murasaki on NZ_GG705127.fna 3022s Verbosity level is: 0 3022s Writing to: output/test 3023s Pattern is: 101 3023s Max usable hash bits: 27 3023s Hit filter is: 0 3023s Hash table type is: EcoHash 3023s Hashing every: 1 base 3023s Histogram detail is: 0 3023s Hashing function is: 3 3023s Collision profiling is: disabled 3023s Repeats are: unmasked 3023s Mergefilter is at: 100 3023s Random seed: 1710493973 (automatic) 3023s Bitscore output: on 3023s Leave status records: no 3023s Join neighbors is: off 3023s Target memory is: 1.28 GB 3023s Retain members is: true 3023s Store repeatmap? yes 3023s Reverse complement data is generated on the fly 3023s Rifts allowed: 0 3023s Fuzzy Extension: yes 3023s Score by minimum pair: yes 3023s Gapped anchors: no 3023s Large sequence support is: enabled => seqpos is 8 bytes 3023s Murasaki version 1.68.6 (LARGESEQ) 3023s Loading NZ_GG705127.fna 3023s Read 549bp (549 bytesp) in 0.044 seconds (12.3 KBp/s) 3023s Done with forward strand (549bp). Preparing reverse complement... 3023s <-> Reversing metdata. 3023s Done. 3023s Seq NZ_GG705127.fna loaded. 549 bytes 3023s Loading NZ_GG705127.gbk 3023s Read 549bp (549 bytesp) in 0.051 seconds (10.6 KBp/s) 3023s Done with forward strand (549bp). Preparing reverse complement... 3023s <-> Reversing metdata. 3023s Done. 3023s Seq NZ_GG705127.gbk loaded. 549 bytes 3023s Sequence loading took: 0.174 seconds 3023s Forward frequencies: A:32.969% C:20.4007% G:20.765% T:25.8652% 3023s Global base frequencies: A/T:58.8342% C/G:41.1658% 3023s Pat: 3 bases long with weight 2 3023s 1 101 3023s Computing hash parameters... 3023s Using 4 hashbits 3024s 0%......... (T -9.248 seconds) ETA: Fri Mar 15 09:13:04 2024 3025s 10%......... (T -8.171 seconds) ETA: Fri Mar 15 09:13:04 2024 3026s 20%......... (T -6.937 seconds) ETA: Fri Mar 15 09:13:04 2024 3026s 30%......... (T -5.280 seconds) ETA: Fri Mar 15 09:13:03 2024 3027s 40%......... (T -3.817 seconds) ETA: Fri Mar 15 09:13:01 2024 3027s 50%......... (T -2.767 seconds) ETA: Fri Mar 15 09:13:01 2024 3028s 60%......... (T -2.145 seconds) ETA: Fri Mar 15 09:13:01 2024 3029s 70%......... (T -1.478 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 80%......... (T -0.669 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 91%........ 3030s Acceptable hash function found after 1000 cycles. 3030s Best uses 2/2 bases and has 0 empties from 2 inputs. 3030s Score: 0.96875 (cf. worst: -4.51562) 3030s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 3030s Total correlation penalty: 0 3030s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 3030s 10 3030s == 3030s w[ 0]>>29: -.C 3030s w[ 0]>>30: A.- 3030s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 3030s Ecolist (optimistic): Expcted entries per list: 8 3030s Ecolist (optimistic): Minimum chunks per list: 4 3030s Would take minimum 256.000000 bytes to make perfect hash. 3030s Hashing 2.14 KB of sequence requires: 3030s ~ linear (in seq length) hashing cost of 3.48 KB 3030s ~ linear (in seq length) expected anchor cost of 51.47 KB 3030s Initial hash table uses: 256 bytes (4 bits, 16 entries) 3030s Expected memory usage (without anchors): 3.73 KB 3030s Expected memory usage (with anchors): 55.20 KB 3030s Hash parameters computed in 7.181 seconds 3030s Creating storage structures: 16 entries in 256 bytes space. 3030s Storage structures created in: 0.007 seconds 3030s 3030s Hashing NZ_GG705127.fna forwards 3030s 0%......... (T -0.027 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 10%......... (T -0.014 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 20%......... (T -0.033 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 30%......... (T -0.027 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 40%......... (T -0.019 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 50%......... (T -0.013 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 60%......... (T -0.009 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 70%......... (T -0.006 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 90%........ 3030s Hashing NZ_GG705127.fna backwards 3030s 0%......... (T -0.087 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 10%......... (T -0.040 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 20%......... (T -0.084 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 30%......... (T -0.055 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 40%......... (T -0.037 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 50%......... (T -0.025 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 60%......... (T -0.016 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 70%......... (T -0.010 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 80%......... (T -0.012 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 90%........ 3030s Hashing NZ_GG705127.gbk forwards 3030s 0%......... (T -0.331 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 10%......... (T -0.149 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 20%......... (T -0.088 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 30%......... (T -0.057 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 40%......... (T -0.038 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 50%......... (T -0.026 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 60%......... (T -0.017 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 70%......... (T -0.012 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 80%......... (T -0.005 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 90%........ 3030s Hashing NZ_GG705127.gbk backwards 3030s 0%......... (T -0.003 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 10%......... (T -0.059 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 20%......... (T -0.036 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 30%......... (T -0.023 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 40%......... (T -0.016 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 70%......... (T -0.004 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 80%......... (T -0.002 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 90%........ 3030s Initial hashing took: 0.301 seconds 3030s Extracting anchors from hash-space. 3030s (T -0.027 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 6%. (T -0.063 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 18%. (T -0.040 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 31%. (T -0.059 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 43%. (T -0.037 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 56%. (T -0.023 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 68%. (T -0.012 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 81%. (T -0.006 seconds) ETA: Fri Mar 15 09:13:01 2024 3030s 93%. 3030s Anchor extraction completed in: 0.144 seconds 3030s Total anchors: 0 3030s Anchor extraction + merge time: 0.156 seconds 3030s Total processing time: 7.832 seconds 3030s Writing anchors... 3030s Total seeds used in anchors: 16 3030s Hash performance: 3030s Keys used: 16 out of 16 possible (100.00%). 3030s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 3030s Average pigeons per pigeon hole: 1 3030s Writing 16 repeats...Output writing finished in: 0.063 seconds 3030s Total time: 7.895 seconds 3030s Murasaki finished! 3030s PASSED MURASAKI 3030s 3030s Testing Genepare on NZ_GG705127.fna 3031s 18446744073709551166 3031s PASSED GENEPARSE 3031s 3032s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3032s Testing mbfa on NZ_GG705127.fna 3032s PASSED mbfa 3033s 3033s Test Murasaki on NZ_GG705128.fna 3033s Verbosity level is: 0 3033s Writing to: output/test 3033s Pattern is: 101 3033s Max usable hash bits: 27 3033s Hit filter is: 0 3033s Hash table type is: EcoHash 3033s Hashing every: 1 base 3033s Histogram detail is: 0 3033s Hashing function is: 3 3033s Collision profiling is: disabled 3033s Repeats are: unmasked 3033s Mergefilter is at: 100 3033s Random seed: 1710493984 (automatic) 3033s Bitscore output: on 3033s Leave status records: no 3033s Join neighbors is: off 3033s Target memory is: 1.28 GB 3033s Retain members is: true 3033s Store repeatmap? yes 3033s Reverse complement data is generated on the fly 3033s Rifts allowed: 0 3033s Fuzzy Extension: yes 3033s Score by minimum pair: yes 3033s Gapped anchors: no 3033s Large sequence support is: enabled => seqpos is 8 bytes 3033s Murasaki version 1.68.6 (LARGESEQ) 3033s Loading NZ_GG705128.fna 3033s Read 548bp (548 bytesp) in 0.022 seconds (24.3 KBp/s) 3033s Done with forward strand (548bp). Preparing reverse complement... 3033s <-> Reversing metdata. 3033s Done. 3033s Seq NZ_GG705128.fna loaded. 548 bytes 3033s Loading NZ_GG705128.gbk 3033s Read 548bp (548 bytesp) in 0.029 seconds (18.8 KBp/s) 3033s Done with forward strand (548bp). Preparing reverse complement... 3033s <-> Reversing metdata. 3033s Done. 3033s Seq NZ_GG705128.gbk loaded. 548 bytes 3033s Sequence loading took: 0.069 seconds 3033s Forward frequencies: A:31.9343% C:19.5255% G:21.7153% T:26.8248% 3033s Global base frequencies: A/T:58.7591% C/G:41.2409% 3033s Pat: 3 bases long with weight 2 3033s 1 101 3033s Computing hash parameters... 3033s Using 4 hashbits 3033s 0%......... (T -5.721 seconds) ETA: Fri Mar 15 09:13:10 2024 3034s 10%......... (T -5.833 seconds) ETA: Fri Mar 15 09:13:11 2024 3035s 20%......... (T -4.860 seconds) ETA: Fri Mar 15 09:13:11 2024 3035s 30%......... (T -3.820 seconds) ETA: Fri Mar 15 09:13:10 2024 3036s 40%......... (T -3.101 seconds) ETA: Fri Mar 15 09:13:10 2024 3037s 50%......... (T -2.496 seconds) ETA: Fri Mar 15 09:13:10 2024 3037s 60%......... (T -1.861 seconds) ETA: Fri Mar 15 09:13:10 2024 3038s 70%......... (T -1.274 seconds) ETA: Fri Mar 15 09:13:10 2024 3038s 80%......... (T -0.550 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 91%........ 3039s Acceptable hash function found after 1000 cycles. 3039s Best uses 2/2 bases and has 0 empties from 2 inputs. 3039s Score: 0.96875 (cf. worst: -4.51562) 3039s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 3039s Total correlation penalty: 0 3039s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 3039s 10 3039s == 3039s w[ 0]>>29: -.C 3039s w[ 0]>>30: A.- 3039s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 3039s Ecolist (optimistic): Expcted entries per list: 8 3039s Ecolist (optimistic): Minimum chunks per list: 4 3039s Would take minimum 256.000000 bytes to make perfect hash. 3039s Hashing 2.14 KB of sequence requires: 3039s ~ linear (in seq length) hashing cost of 3.48 KB 3039s ~ linear (in seq length) expected anchor cost of 51.38 KB 3039s Initial hash table uses: 256 bytes (4 bits, 16 entries) 3039s Expected memory usage (without anchors): 3.73 KB 3039s Expected memory usage (with anchors): 55.10 KB 3039s Hash parameters computed in 6.114 seconds 3039s Creating storage structures: 16 entries in 256 bytes space. 3039s Storage structures created in: 0.045 seconds 3039s 3039s Hashing NZ_GG705128.fna forwards 3039s 0%......... (T -0.128 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 10%......... (T -0.060 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 20%......... (T -0.036 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 30%......... (T -0.024 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 40%......... (T -0.016 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 50%......... (T -0.011 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 60%......... (T -0.007 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 70%......... (T -0.014 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 90%........ 3039s Hashing NZ_GG705128.fna backwards 3039s 0%......... (T -0.134 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 10%......... (T -0.062 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 20%......... (T -0.037 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 30%......... (T -0.024 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 40%......... (T -0.017 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 50%......... (T -0.034 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 60%......... (T -0.022 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 70%......... (T -0.013 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 80%......... (T -0.006 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 90%........ 3039s Hashing NZ_GG705128.gbk forwards 3039s 0%......... (T -0.311 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 10%......... (T -0.141 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 20%......... (T -0.083 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 30%......... (T -0.054 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 40%......... (T -0.036 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 50%......... (T -0.025 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 60%......... (T -0.016 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 70%......... (T -0.010 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 80%......... (T -0.004 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 90%........ 3039s Hashing NZ_GG705128.gbk backwards 3039s 0%......... (T -0.005 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 10%......... (T -0.008 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 20%......... (T -0.006 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 30%......... (T -0.005 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 40%......... (T -0.003 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 50%......... (T -0.006 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 60%......... (T -0.012 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 70%......... (T -0.007 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 80%......... (T -0.003 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 90%........ 3039s Initial hashing took: 0.263 seconds 3039s Extracting anchors from hash-space. 3039s (T -0.021 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 6%. (T -0.023 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 18%. (T -0.019 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 31%. (T -0.048 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 43%. (T -0.042 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 56%. (T -0.032 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 68%. (T -0.017 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 81%. (T -0.007 seconds) ETA: Fri Mar 15 09:13:10 2024 3039s 93%. 3039s Anchor extraction completed in: 0.092 seconds 3039s Total anchors: 0 3039s Anchor extraction + merge time: 0.092 seconds 3039s Total processing time: 6.616 seconds 3039s Writing anchors... 3039s Total seeds used in anchors: 16 3039s Hash performance: 3039s Keys used: 16 out of 16 possible (100.00%). 3039s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 3039s Average pigeons per pigeon hole: 1 3039s Writing 16 repeats...Output writing finished in: 0.082 seconds 3039s Total time: 6.698 seconds 3039s Murasaki finished! 3039s PASSED MURASAKI 3039s 3039s Testing Genepare on NZ_GG705128.fna 3040s 18446744073709551165 3040s PASSED GENEPARSE 3040s 3041s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3041s Testing mbfa on NZ_GG705128.fna 3041s PASSED mbfa 3041s 3041s Test Murasaki on NZ_GG705129.fna 3042s Verbosity level is: 0 3042s Writing to: output/test 3042s Pattern is: 101 3042s Max usable hash bits: 27 3042s Hit filter is: 0 3042s Hash table type is: EcoHash 3042s Hashing every: 1 base 3042s Histogram detail is: 0 3042s Hashing function is: 3 3042s Collision profiling is: disabled 3042s Repeats are: unmasked 3042s Mergefilter is at: 100 3042s Random seed: 1710493992 (automatic) 3042s Bitscore output: on 3042s Leave status records: no 3042s Join neighbors is: off 3042s Target memory is: 1.28 GB 3042s Retain members is: true 3042s Store repeatmap? yes 3042s Reverse complement data is generated on the fly 3042s Rifts allowed: 0 3042s Fuzzy Extension: yes 3042s Score by minimum pair: yes 3042s Gapped anchors: no 3042s Large sequence support is: enabled => seqpos is 8 bytes 3042s Murasaki version 1.68.6 (LARGESEQ) 3042s Loading NZ_GG705129.fna 3042s Read 536bp (536 bytesp) in 0.011 seconds (46.4 KBp/s) 3042s Done with forward strand (536bp). Preparing reverse complement... 3042s <-> Reversing metdata. 3042s Done. 3042s Seq NZ_GG705129.fna loaded. 536 bytes 3042s Loading NZ_GG705129.gbk 3042s Read 536bp (536 bytesp) in 0.007 seconds (75.7 KBp/s) 3042s Done with forward strand (536bp). Preparing reverse complement... 3042s <-> Reversing metdata. 3042s Done. 3042s Seq NZ_GG705129.gbk loaded. 536 bytes 3042s Sequence loading took: 0.027 seconds 3042s Forward frequencies: A:36.3806% C:13.2463% G:17.9104% T:32.4627% 3042s Global base frequencies: A/T:68.8433% C/G:31.1567% 3042s Pat: 3 bases long with weight 2 3042s 1 101 3042s Computing hash parameters... 3042s Using 4 hashbits 3042s 0%......... (T -2.799 seconds) ETA: Fri Mar 15 09:13:16 2024 3043s 10%......... (T -3.785 seconds) ETA: Fri Mar 15 09:13:17 2024 3043s 20%......... (T -3.493 seconds) ETA: Fri Mar 15 09:13:18 2024 3043s 30%......... (T -2.830 seconds) ETA: Fri Mar 15 09:13:17 2024 3044s 40%......... (T -2.205 seconds) ETA: Fri Mar 15 09:13:17 2024 3045s 50%......... (T -2.131 seconds) ETA: Fri Mar 15 09:13:18 2024 3046s 60%......... (T -1.718 seconds) ETA: Fri Mar 15 09:13:18 2024 3047s 70%......... (T -1.201 seconds) ETA: Fri Mar 15 09:13:19 2024 3047s 80%......... (T -0.538 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 91%........ 3048s Acceptable hash function found after 1000 cycles. 3048s Best uses 2/2 bases and has 0 empties from 2 inputs. 3048s Score: 0.96875 (cf. worst: -4.51562) 3048s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 3048s Total correlation penalty: 0 3048s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 3048s 10 3048s == 3048s w[ 0]>>29: -.C 3048s w[ 0]>>30: A.- 3048s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 3048s Ecolist (optimistic): Expcted entries per list: 8 3048s Ecolist (optimistic): Minimum chunks per list: 4 3048s Would take minimum 256.000000 bytes to make perfect hash. 3048s Hashing 2.09 KB of sequence requires: 3048s ~ linear (in seq length) hashing cost of 3.40 KB 3048s ~ linear (in seq length) expected anchor cost of 50.25 KB 3048s Initial hash table uses: 256 bytes (4 bits, 16 entries) 3048s Expected memory usage (without anchors): 3.65 KB 3048s Expected memory usage (with anchors): 53.90 KB 3048s Hash parameters computed in 6.084 seconds 3048s Creating storage structures: 16 entries in 256 bytes space. 3048s Storage structures created in: 0.005 seconds 3048s 3048s Hashing NZ_GG705129.fna forwards 3048s 0%........ (T -0.245 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 10%........ (T -0.111 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 20%........ (T -0.066 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 30%........ (T -0.043 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 40%........ (T -0.029 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 50%........ (T -0.019 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 60%........ (T -0.013 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 70%........ (T -0.007 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 80%........ (T -0.003 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 91%....... 3048s Hashing NZ_GG705129.fna backwards 3048s 0%........ (T -0.004 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 10%........ (T -0.003 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 20%........ (T -0.003 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 30%........ (T -0.002 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 40%........ (T -0.002 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 50%........ (T -0.001 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 60%........ (T -0.012 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 70%........ (T -0.008 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 80%........ (T -0.003 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 91%....... 3048s Hashing NZ_GG705129.gbk forwards 3048s 0%........ (T -0.004 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 10%........ (T -0.003 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 20%........ (T -0.003 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 30%........ (T -0.002 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 40%........ (T -0.002 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 50%........ (T -0.001 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 60%........ (T -0.001 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 70%........ (T -0.002 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 80%........ (T -0.001 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 91%....... 3048s Hashing NZ_GG705129.gbk backwards 3048s 0%........ (T -0.002 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 10%........ (T -0.002 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 20%........ (T -0.013 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 30%........ (T -0.083 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 40%........ (T -0.079 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 50%........ (T -0.053 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 60%........ (T -0.042 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 70%........ (T -0.031 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 80%........ (T -0.012 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 91%....... 3048s Initial hashing took: 0.227 seconds 3048s Extracting anchors from hash-space. 3048s (T -0.587 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 6%. (T -0.240 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 18%. (T -0.242 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 31%. (T -0.154 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 43%. (T -0.092 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 56%. (T -0.062 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 68%. (T -0.035 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 81%. (T -0.012 seconds) ETA: Fri Mar 15 09:13:19 2024 3048s 93%. 3048s Anchor extraction completed in: 0.181 seconds 3048s Total anchors: 0 3048s Anchor extraction + merge time: 0.182 seconds 3048s Total processing time: 6.532 seconds 3048s Writing anchors... 3048s Total seeds used in anchors: 16 3048s Hash performance: 3048s Keys used: 16 out of 16 possible (100.00%). 3048s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 3048s Average pigeons per pigeon hole: 1 3048s Writing 16 repeats...Output writing finished in: 0.067 seconds 3048s Total time: 6.599 seconds 3048s Murasaki finished! 3048s PASSED MURASAKI 3048s 3048s Testing Genepare on NZ_GG705129.fna 3048s 18446744073709551153 3048s PASSED GENEPARSE 3048s 3052s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3052s Testing mbfa on NZ_GG705129.fna 3052s PASSED mbfa 3052s 3052s Test Murasaki on NZ_GG705130.fna 3052s Verbosity level is: 0 3052s Writing to: output/test 3052s Pattern is: 101 3052s Max usable hash bits: 27 3052s Hit filter is: 0 3052s Hash table type is: EcoHash 3052s Hashing every: 1 base 3052s Histogram detail is: 0 3052s Hashing function is: 3 3052s Collision profiling is: disabled 3052s Repeats are: unmasked 3052s Mergefilter is at: 100 3052s Random seed: 1710494002 (automatic) 3052s Bitscore output: on 3052s Leave status records: no 3052s Join neighbors is: off 3052s Target memory is: 1.28 GB 3052s Retain members is: true 3052s Store repeatmap? yes 3052s Reverse complement data is generated on the fly 3052s Rifts allowed: 0 3052s Fuzzy Extension: yes 3052s Score by minimum pair: yes 3052s Gapped anchors: no 3052s Large sequence support is: enabled => seqpos is 8 bytes 3052s Murasaki version 1.68.6 (LARGESEQ) 3052s Loading NZ_GG705130.fna 3052s Read 512bp (512 bytesp) in 0.008 seconds (61.9 KBp/s) 3052s Done with forward strand (512bp). Preparing reverse complement... 3052s <-> Reversing metdata. 3052s Done. 3052s Seq NZ_GG705130.fna loaded. 512 bytes 3052s Loading NZ_GG705130.gbk 3052s Read 512bp (512 bytesp) in 0.007 seconds (71.4 KBp/s) 3052s Done with forward strand (512bp). Preparing reverse complement... 3052s <-> Reversing metdata. 3052s Done. 3052s Seq NZ_GG705130.gbk loaded. 512 bytes 3052s Sequence loading took: 0.031 seconds 3052s Forward frequencies: A:33.5938% C:14.4531% G:19.1406% T:32.8125% 3052s Global base frequencies: A/T:66.4062% C/G:33.5938% 3052s Pat: 3 bases long with weight 2 3052s 1 101 3052s Computing hash parameters... 3052s Using 4 hashbits 3052s 0%......... (T -7.316 seconds) ETA: Fri Mar 15 09:13:30 2024 3053s 10%......... (T -6.425 seconds) ETA: Fri Mar 15 09:13:30 2024 3053s 20%......... (T -4.477 seconds) ETA: Fri Mar 15 09:13:29 2024 3054s 30%......... (T -3.499 seconds) ETA: Fri Mar 15 09:13:28 2024 3054s 40%......... (T -2.855 seconds) ETA: Fri Mar 15 09:13:28 2024 3055s 50%......... (T -2.200 seconds) ETA: Fri Mar 15 09:13:28 2024 3055s 60%......... (T -1.571 seconds) ETA: Fri Mar 15 09:13:28 2024 3056s 70%......... (T -1.052 seconds) ETA: Fri Mar 15 09:13:28 2024 3056s 80%......... (T -0.456 seconds) ETA: Fri Mar 15 09:13:27 2024 3057s 91%........ 3057s Acceptable hash function found after 1000 cycles. 3057s Best uses 2/2 bases and has 0 empties from 2 inputs. 3057s Score: 0.96875 (cf. worst: -4.51562) 3057s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 3057s Total correlation penalty: 0 3057s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 3057s 10 3057s == 3057s w[ 0]>>29: -.C 3057s w[ 0]>>30: A.- 3057s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 3057s Ecolist (optimistic): Expcted entries per list: 8 3057s Ecolist (optimistic): Minimum chunks per list: 4 3057s Would take minimum 256.000000 bytes to make perfect hash. 3057s Hashing 2.00 KB of sequence requires: 3057s ~ linear (in seq length) hashing cost of 3.25 KB 3057s ~ linear (in seq length) expected anchor cost of 48.00 KB 3057s Initial hash table uses: 256 bytes (4 bits, 16 entries) 3057s Expected memory usage (without anchors): 3.50 KB 3057s Expected memory usage (with anchors): 51.50 KB 3057s Hash parameters computed in 5.893 seconds 3057s Creating storage structures: 16 entries in 256 bytes space. 3057s Storage structures created in: 0.030 seconds 3057s 3057s Hashing NZ_GG705130.fna forwards 3057s 0%........ (T -0.198 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 10%........ (T -0.090 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 20%........ (T -0.053 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 30%........ (T -0.035 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 40%........ (T -0.023 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 51%........ (T -0.024 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 61%........ (T -0.016 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 71%........ (T -0.009 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 81%........ (T -0.004 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 91%...... 3057s Hashing NZ_GG705130.fna backwards 3057s 0%........ (T -0.223 seconds) ETA: Fri Mar 15 09:13:29 2024 3057s 10%........ (T -0.149 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 20%........ (T -0.088 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 30%........ (T -0.064 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 40%........ (T -0.118 seconds) ETA: Fri Mar 15 09:13:29 2024 3057s 51%........ (T -0.079 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 61%........ (T -0.050 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 71%........ (T -0.029 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 81%........ (T -0.012 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 91%...... 3057s Hashing NZ_GG705130.gbk forwards 3057s 0%........ (T -0.010 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 10%........ (T -0.007 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 20%........ (T -0.005 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 30%........ (T -0.004 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 40%........ (T -0.003 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 51%........ (T -0.002 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 61%........ (T -0.001 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 71%........ (T -0.001 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 81%........ (T -0.000 seconds) ETA: Fri Mar 15 09:13:28 2024 3057s 91%...... 3057s Hashing NZ_GG705130.gbk backwards 3058s 0%........ (T -0.230 seconds) ETA: Fri Mar 15 09:13:29 2024 3058s 10%........ (T -0.104 seconds) ETA: Fri Mar 15 09:13:29 2024 3058s 20%........ (T -0.062 seconds) ETA: Fri Mar 15 09:13:29 2024 3058s 30%........ (T -0.040 seconds) ETA: Fri Mar 15 09:13:29 2024 3058s 40%........ (T -0.026 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 51%........ (T -0.018 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 61%........ (T -0.011 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 71%........ (T -0.007 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 81%........ (T -0.003 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 91%...... 3058s Initial hashing took: 0.283 seconds 3058s Extracting anchors from hash-space. 3058s (T -0.007 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 6%. (T -0.014 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 18%. (T -0.009 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 31%. (T -0.008 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 43%. (T -0.005 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 56%. (T -0.004 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 68%. (T -0.002 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 81%. (T -0.002 seconds) ETA: Fri Mar 15 09:13:28 2024 3058s 93%. 3058s Anchor extraction completed in: 0.023 seconds 3058s Total anchors: 0 3058s Anchor extraction + merge time: 0.023 seconds 3058s Total processing time: 6.268 seconds 3058s Writing anchors... 3058s Total seeds used in anchors: 16 3058s Hash performance: 3058s Keys used: 16 out of 16 possible (100.00%). 3058s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 3058s Average pigeons per pigeon hole: 1 3058s Writing 16 repeats...Output writing finished in: 0.044 seconds 3058s Total time: 6.312 seconds 3058s Murasaki finished! 3058s PASSED MURASAKI 3058s 3058s Testing Genepare on NZ_GG705130.fna 3058s 18446744073709551129 3058s PASSED GENEPARSE 3058s 3059s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 3059s Testing mbfa on NZ_GG705130.fna 3059s PASSED mbfa 3059s 3059s PASS! 3063s autopkgtest [09:13:33]: test run-unit-test: -----------------------] 3067s run-unit-test PASS 3067s autopkgtest [09:13:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 3073s autopkgtest [09:13:44]: @@@@@@@@@@@@@@@@@@@@ summary 3073s run-unit-test PASS 3135s Creating nova instance adt-noble-arm64-murasaki-20240315-082231-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 5349f32b-1176-4dff-aa9b-dc96a6d82dd1)...