0s autopkgtest [22:36:36]: starting date and time: 2024-03-13 22:36:36+0000
  0s autopkgtest [22:36:36]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [22:36:36]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wbfkz94c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:boost1.83,src:openmpi,src:pmix --apt-upgrade murasaki --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=boost1.83/1.83.0-2.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-12.secgroup --name adt-noble-arm64-murasaki-20240313-223636-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
338s autopkgtest [22:42:14]: testbed dpkg architecture: arm64
339s autopkgtest [22:42:15]: testbed apt version: 2.7.12
339s autopkgtest [22:42:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup
340s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
341s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [42.3 kB]
341s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2820 kB]
341s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B]
341s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [450 kB]
341s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [603 kB]
341s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
341s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB]
341s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
341s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3220 kB]
341s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
341s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [42.3 kB]
341s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
343s Fetched 7331 kB in 2s (3001 kB/s)
343s Reading package lists...
347s Reading package lists...
348s Building dependency tree...
348s Reading state information...
348s Calculating upgrade...
349s The following packages will be upgraded:
349s   console-setup console-setup-linux keyboard-configuration
349s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
349s Need to get 2202 kB of archives.
349s After this operation, 2048 B of additional disk space will be used.
349s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup-linux all 1.226ubuntu1 [1880 kB]
350s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 console-setup all 1.226ubuntu1 [110 kB]
350s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 keyboard-configuration all 1.226ubuntu1 [212 kB]
351s Preconfiguring packages ...
353s Fetched 2202 kB in 1s (2946 kB/s)
353s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74759 files and directories currently installed.)
353s Preparing to unpack .../console-setup-linux_1.226ubuntu1_all.deb ...
353s Unpacking console-setup-linux (1.226ubuntu1) over (1.223ubuntu2) ...
353s Preparing to unpack .../console-setup_1.226ubuntu1_all.deb ...
353s Unpacking console-setup (1.226ubuntu1) over (1.223ubuntu2) ...
354s Preparing to unpack .../keyboard-configuration_1.226ubuntu1_all.deb ...
354s Unpacking keyboard-configuration (1.226ubuntu1) over (1.223ubuntu2) ...
354s Setting up keyboard-configuration (1.226ubuntu1) ...
356s Your console font configuration will be updated the next time your system
356s boots. If you want to update it now, run 'setupcon' from a virtual console.
356s update-initramfs: deferring update (trigger activated)
356s Setting up console-setup-linux (1.226ubuntu1) ...
358s Setting up console-setup (1.226ubuntu1) ...
359s update-initramfs: deferring update (trigger activated)
359s Processing triggers for man-db (2.12.0-3) ...
360s Processing triggers for initramfs-tools (0.142ubuntu20) ...
360s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic
360s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
398s System running in EFI mode, skipping.
399s Reading package lists...
399s Building dependency tree...
399s Reading state information...
400s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
401s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
401s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
401s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
401s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
403s Reading package lists...
403s Reading package lists...
403s Building dependency tree...
403s Reading state information...
404s Calculating upgrade...
404s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
404s Reading package lists...
404s Building dependency tree...
404s Reading state information...
405s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
405s autopkgtest [22:43:21]: rebooting testbed after setup commands that affected boot
758s autopkgtest [22:49:14]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
761s autopkgtest [22:49:17]: @@@@@@@@@@@@@@@@@@@@ apt-source murasaki
768s Get:1 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (dsc) [2787 B]
768s Get:2 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [3944 kB]
768s Get:3 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [308 kB]
768s Get:4 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (diff) [11.4 kB]
769s gpgv: Signature made Tue Dec 19 15:02:21 2023 UTC
769s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
769s gpgv: Can't check signature: No public key
769s dpkg-source: warning: cannot verify inline signature for ./murasaki_1.68.6-13build4.dsc: no acceptable signature found
769s autopkgtest [22:49:25]: testing package murasaki version 1.68.6-13build4
770s autopkgtest [22:49:26]: build not needed
771s autopkgtest [22:49:27]: test run-unit-test: preparing testbed
776s Reading package lists...
776s Building dependency tree...
776s Reading state information...
776s Starting pkgProblemResolver with broken count: 0
776s Starting 2 pkgProblemResolver with broken count: 0
776s Done
777s The following additional packages will be installed:
777s   adwaita-icon-theme aglfn at-spi2-common autoconf automake autotools-dev
777s   cpp-13-aarch64-linux-gnu dconf-gsettings-backend dconf-service fontconfig
777s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13
777s   gcc-13-aarch64-linux-gnu gfortran-13 gfortran-13-aarch64-linux-gnu gnuplot
777s   gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme
777s   humanity-icon-theme icu-devtools imagemagick imagemagick-6-common
777s   imagemagick-6.q16 libamd-comgr2 libamdhip64-5 libasan8 libatk-bridge2.0-0
777s   libatk1.0-0 libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data
777s   libavahi-common3 libbio-perl-perl libblas3 libboost-atomic1.83-dev
777s   libboost-atomic1.83.0 libboost-filesystem-dev libboost-filesystem1.83-dev
777s   libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev
777s   libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev
777s   libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0
777s   libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0
777s   libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2
777s   libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0
777s   libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1
777s   libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev
777s   libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
777s   libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-13-dev libgd3
777s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5
777s   libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1
777s   libgraphite2-3 libgtk-3-0 libgtk-3-common libharfbuzz0b libheif-plugin-dav1d
777s   libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhsakmt1 libhwasan0
777s   libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libice6 libicu-dev
777s   libinput-bin libinput10 libio-string-perl libisl23 libitm1 libjbig0
777s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2
777s   liblerc4 libllvm17 liblqr-1-0 liblsan0 libltdl-dev libltdl7 liblua5.4-0
777s   libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 libmtdev1
777s   libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnsl-dev libnuma-dev
777s   libopenjp2-7 libopenmpi-dev libopenmpi3t64 libpango-1.0-0
777s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0
777s   libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2t64
777s   libpstreams-dev libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5
777s   libqt5printsupport5 libqt5svg5 libqt5widgets5 libraw23 librdmacm1t64
777s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libterm-readkey-perl
777s   libtext-wrapper-perl libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6
777s   libtsan2 libubsan1 libucx0 libvulkan1 libwacom-common libwacom9
777s   libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0
777s   libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1 libwxgtk3.2-1 libx11-xcb1
777s   libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0
777s   libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0
777s   libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1
777s   libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1
777s   libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1
777s   libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1
777s   libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki
777s   murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common
777s   r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots
777s   r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto
777s   ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev
777s Suggested packages:
777s   autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-13-locales
777s   cpp-13-doc gcc-13-doc gfortran-13-doc libcoarrays-dev gnuplot-doc
777s   imagemagick-6-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp
777s   grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils
777s   texlive-base-bin transfig libraw-bin bioperl libxml-sax-expatxs-perl
777s   libboost1.83-doc libboost-chrono1.83-dev libboost-container1.83-dev
777s   libboost-context1.83-dev libboost-contract1.83-dev
777s   libboost-coroutine1.83-dev libboost-date-time1.83-dev
777s   libboost-exception1.83-dev libboost-fiber1.83-dev
777s   libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev
777s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
777s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
777s   libboost-numpy1.83-dev libboost-program-options1.83-dev
777s   libboost-python1.83-dev libboost-random1.83-dev
777s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
777s   libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev
777s   libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev
777s   libboost1.83-tools-dev libmpfrc++-dev libntl-dev glibc-doc manpages-dev
777s   colord cups-common libfftw3-bin libfftw3-dev libgd-tools gvfs
777s   libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc
777s   libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e
777s   libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs liblcms2-utils
777s   libtool-doc libmagickcore-6.q16-7-extra notification-daemon openmpi-doc
777s   qgnomeplatform-qt5 qt5-image-formats-plugins libstdc++-13-doc tcl8.6 tk8.6
777s   libwacom-bin m4-doc opencl-icd gfortran | fortran-compiler elpa-ess
777s   r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rpart r-cran-knitr
777s   r-cran-rmarkdown
777s Recommended packages:
777s   librsvg2-common libmagickcore-6.q16-7-extra ghostscript netpbm at-spi2-core
777s   bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl
777s   libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl
777s   libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
777s   libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl
777s   libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl
777s   libset-scalar-perl libsoap-lite-perl libsort-naturally-perl
777s   libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
777s   libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl
777s   libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl
777s   libxml-writer-perl libxml-libxml-perl libwww-perl manpages manpages-dev
777s   libc-devtools perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl
777s   libxml-libxslt-perl libmldbm-perl libxml-perl libgdk-pixbuf2.0-bin
777s   libgl1-amber-dri libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265
777s   javascript-common libtool fonts-urw-base35 libcoarrays-openmpi-dev
777s   qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 mesa-vulkan-drivers
777s   | vulkan-icd r-recommended r-base-dev r-doc-html r-cran-testthat
777s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
777s   x11-xserver-utils
777s The following NEW packages will be installed:
777s   adwaita-icon-theme aglfn at-spi2-common autoconf automake autopkgtest-satdep
777s   autotools-dev cpp-13-aarch64-linux-gnu dconf-gsettings-backend dconf-service
777s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13
777s   gcc-13-aarch64-linux-gnu gfortran-13 gfortran-13-aarch64-linux-gnu gnuplot
777s   gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme
777s   humanity-icon-theme icu-devtools imagemagick imagemagick-6-common
777s   imagemagick-6.q16 libamd-comgr2 libamdhip64-5 libasan8 libatk-bridge2.0-0
777s   libatk1.0-0 libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data
777s   libavahi-common3 libbio-perl-perl libblas3 libboost-atomic1.83-dev
777s   libboost-atomic1.83.0 libboost-filesystem-dev libboost-filesystem1.83-dev
777s   libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev
777s   libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev
777s   libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0
777s   libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0
777s   libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2
777s   libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0
777s   libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1
777s   libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev
777s   libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
777s   libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-13-dev libgd3
777s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5
777s   libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1
777s   libgraphite2-3 libgtk-3-0 libgtk-3-common libharfbuzz0b libheif-plugin-dav1d
777s   libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhsakmt1 libhwasan0
777s   libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libice6 libicu-dev
777s   libinput-bin libinput10 libio-string-perl libisl23 libitm1 libjbig0
777s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2
777s   liblerc4 libllvm17 liblqr-1-0 liblsan0 libltdl-dev libltdl7 liblua5.4-0
777s   libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 libmtdev1
777s   libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnsl-dev libnuma-dev
777s   libopenjp2-7 libopenmpi-dev libopenmpi3t64 libpango-1.0-0
777s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0
777s   libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2t64
777s   libpstreams-dev libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5
777s   libqt5printsupport5 libqt5svg5 libqt5widgets5 libraw23 librdmacm1t64
777s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libterm-readkey-perl
777s   libtext-wrapper-perl libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6
777s   libtsan2 libubsan1 libucx0 libvulkan1 libwacom-common libwacom9
777s   libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0
777s   libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1 libwxgtk3.2-1 libx11-xcb1
777s   libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0
777s   libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0
777s   libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1
777s   libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1
777s   libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1
777s   libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1
777s   libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki
777s   murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common
777s   r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots
777s   r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto
777s   ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev
777s 0 upgraded, 255 newly installed, 0 to remove and 0 not upgraded.
777s Need to get 232 MB/232 MB of archives.
777s After this operation, 1023 MB of additional disk space will be used.
777s Get:1 /tmp/autopkgtest.32UgmF/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [796 B]
778s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
778s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB]
778s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
778s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
778s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
778s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
778s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
778s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB]
778s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB]
778s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB]
778s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B]
778s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB]
778s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
778s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
778s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
778s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB]
778s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 liblqr-1-0 arm64 0.4.2-2.1 [22.5 kB]
778s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB]
778s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB]
778s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libraw23 arm64 0.21.2-2 [381 kB]
778s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
778s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
778s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
778s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
778s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB]
778s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB]
778s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick-6-common all 8:6.9.12.98+dfsg1-5 [69.2 kB]
778s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libmagickcore-6.q16-7 arm64 8:6.9.12.98+dfsg1-5 [1714 kB]
778s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 libmagickwand-6.q16-7 arm64 8:6.9.12.98+dfsg1-5 [276 kB]
778s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B]
778s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB]
778s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB]
778s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B]
778s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB]
778s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB]
778s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB]
778s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B]
778s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB]
778s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB]
779s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB]
779s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
779s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
779s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
779s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
779s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdconf1 arm64 0.40.0-4 [39.2 kB]
779s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-service arm64 0.40.0-4 [26.1 kB]
779s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-gsettings-backend arm64 0.40.0-4 [21.6 kB]
779s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
779s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
779s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
779s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
779s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
779s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
779s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
779s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
779s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
779s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
779s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
780s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
780s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
780s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
780s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
780s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
780s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
780s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB]
780s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
780s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
780s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
780s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
780s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
780s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB]
780s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot-data all 5.4.4+dfsg1-2build1 [74.6 kB]
780s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
780s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
780s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
780s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
780s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
780s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB]
780s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgd3 arm64 2.3.3-9ubuntu1 [119 kB]
780s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB]
780s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
780s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
780s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
780s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
780s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
780s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
780s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
780s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
780s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB]
780s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
780s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5core5a arm64 5.15.12+dfsg-3ubuntu1 [1969 kB]
780s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB]
780s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-server0 arm64 1.22.0-2.1 [34.0 kB]
780s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB]
780s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libgbm1 arm64 24.0.1-1ubuntu1 [43.0 kB]
780s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB]
780s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-client0 arm64 1.22.0-2.1 [25.6 kB]
780s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B]
780s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B]
780s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B]
780s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B]
780s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B]
780s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB]
780s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B]
780s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libegl-mesa0 arm64 24.0.1-1ubuntu1 [116 kB]
781s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libegl1 arm64 1.7.0-1 [29.2 kB]
781s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB]
781s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB]
781s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB]
781s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB]
781s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB]
781s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB]
781s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB]
781s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB]
782s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB]
783s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB]
783s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB]
783s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB]
783s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
783s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
783s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libmtdev1 arm64 1.1.6-1build4 [14.4 kB]
783s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom-common all 2.10.0-1 [63.3 kB]
783s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom9 arm64 2.10.0-1 [23.7 kB]
783s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libinput-bin arm64 1.25.0-1 [21.9 kB]
783s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libinput10 arm64 1.25.0-1 [129 kB]
783s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libmd4c0 arm64 0.4.8-1 [41.2 kB]
783s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5dbus5 arm64 5.15.12+dfsg-3ubuntu1 [224 kB]
783s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5network5 arm64 5.15.12+dfsg-3ubuntu1 [741 kB]
783s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
783s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-icccm4 arm64 0.4.1-1.1build2 [11.0 kB]
783s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-util1 arm64 0.4.0-1build2 [11.2 kB]
783s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-image0 arm64 0.4.0-2 [11.1 kB]
783s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-keysyms1 arm64 0.4.0-1build3 [8606 B]
783s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render-util0 arm64 0.3.9-1build3 [10.2 kB]
783s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shape0 arm64 1.15-1 [6106 B]
783s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinerama0 arm64 1.15-1 [5434 B]
783s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinput0 arm64 1.15-1 [33.5 kB]
783s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xkb1 arm64 1.15-1 [31.7 kB]
783s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1 [13.6 kB]
783s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5gui5 arm64 5.15.12+dfsg-3ubuntu1 [3616 kB]
783s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB]
783s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB]
783s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB]
783s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB]
783s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5widgets5 arm64 5.15.12+dfsg-3ubuntu1 [2550 kB]
783s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5printsupport5 arm64 5.15.12+dfsg-3ubuntu1 [209 kB]
783s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5svg5 arm64 5.15.12-1 [177 kB]
783s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
783s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxbase3.2-1 arm64 3.2.4+dfsg-3 [860 kB]
783s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB]
783s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB]
783s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libatspi2.0-0 arm64 2.50.0-1 [78.5 kB]
783s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 libatk-bridge2.0-0 arm64 2.50.0-1 [65.0 kB]
783s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo-gobject2 arm64 1.18.0-1 [127 kB]
783s Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libcolord2 arm64 1.4.7-1 [148 kB]
783s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libepoxy0 arm64 1.5.10-1 [247 kB]
783s Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-cursor0 arm64 1.22.0-2.1 [10.2 kB]
783s Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-egl1 arm64 1.22.0-2.1 [5498 B]
783s Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B]
783s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB]
783s Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B]
783s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B]
783s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB]
783s Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB]
783s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-0 arm64 3.24.40-2ubuntu1 [2867 kB]
784s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 libnotify4 arm64 0.8.3-1 [25.3 kB]
784s Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB]
784s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxgtk3.2-1 arm64 3.2.4+dfsg-3 [4341 kB]
784s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot-qt arm64 5.4.4+dfsg1-2build1 [1109 kB]
784s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot all 5.4.4+dfsg1-2build1 [3584 B]
784s Get:172 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
784s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick-6.q16 arm64 8:6.9.12.98+dfsg1-5 [254 kB]
784s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick arm64 8:6.9.12.98+dfsg1-5 [14.2 kB]
784s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB]
784s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB]
784s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB]
784s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB]
784s Get:179 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
784s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 libdata-stag-perl all 0.14-3 [372 kB]
784s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-perl-perl all 1.7.8-1 [2580 kB]
785s Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
785s Get:183 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
785s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost1.83-dev arm64 1.83.0-2.1ubuntu2 [10.7 MB]
785s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-atomic1.83.0 arm64 1.83.0-2.1ubuntu2 [239 kB]
786s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-atomic1.83-dev arm64 1.83.0-2.1ubuntu2 [235 kB]
786s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-2.1ubuntu2 [281 kB]
786s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-system1.83.0 arm64 1.83.0-2.1ubuntu2 [236 kB]
786s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-system1.83-dev arm64 1.83.0-2.1ubuntu2 [231 kB]
786s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libboost-filesystem1.83-dev arm64 1.83.0-2.1ubuntu2 [301 kB]
786s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-filesystem-dev arm64 1.83.0.1ubuntu2 [4094 B]
786s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-regex1.83.0 arm64 1.83.0-2.1ubuntu2 [329 kB]
786s Get:193 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
786s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-regex1.83-dev arm64 1.83.0-2.1ubuntu2 [349 kB]
786s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-2.1ubuntu2 [258 kB]
786s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libboost-iostreams1.83-dev arm64 1.83.0-2.1ubuntu2 [265 kB]
786s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libboost-iostreams-dev arm64 1.83.0.1ubuntu2 [4046 B]
786s Get:198 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-regex-dev arm64 1.83.0.1ubuntu2 [4324 B]
786s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libcrypto++8t64 arm64 8.9.0-1.1 [1091 kB]
786s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 libcrypto++-dev arm64 8.9.0-1.1 [2002 kB]
786s Get:201 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-2.1-7 arm64 2.1.12-stable-9 [138 kB]
786s Get:202 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-9 [61.3 kB]
786s Get:203 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B]
786s Get:204 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-9 [14.6 kB]
786s Get:205 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-dev arm64 2.1.12-stable-9 [282 kB]
787s Get:206 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB]
787s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB]
787s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB]
787s Get:209 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
787s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
787s Get:211 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
787s Get:212 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl-dev arm64 2.4.7-7 [170 kB]
787s Get:213 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-3-dev arm64 3.7.0-0.3 [105 kB]
787s Get:214 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-route-3-dev arm64 3.7.0-0.3 [225 kB]
787s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB]
787s Get:216 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB]
787s Get:217 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB]
787s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB]
787s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB]
787s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix2t64 arm64 5.0.1-4.1 [655 kB]
787s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB]
787s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi3t64 arm64 4.1.6-5.1ubuntu3 [2233 kB]
787s Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
787s Get:224 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
787s Get:225 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma-dev arm64 2.0.18-1 [39.5 kB]
787s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-dev arm64 2.10.0-1 [259 kB]
787s Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
787s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix-dev arm64 5.0.1-4.1 [4022 kB]
787s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 libpstreams-dev all 1.0.3-1 [115 kB]
787s Get:230 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
787s Get:231 http://ftpmaster.internal/ubuntu noble/main arm64 libterm-readkey-perl arm64 2.38-2build2 [23.1 kB]
787s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libtext-wrapper-perl all 1.05-4 [9820 B]
787s Get:233 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
787s Get:234 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
787s Get:235 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
787s Get:236 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB]
787s Get:237 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
787s Get:238 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
787s Get:239 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
787s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB]
788s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB]
788s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB]
788s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-catools arm64 1.18.2-1 [200 kB]
788s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB]
788s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB]
788s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gdata all 3.0.0-1 [483 kB]
788s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gplots all 3.1.3.1-1 [589 kB]
788s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rocr all 1.0-11-2build1 [446 kB]
788s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 murasaki-common all 1.68.6-13build4 [146 kB]
788s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 murasaki arm64 1.68.6-13build4 [672 kB]
788s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 murasaki-mpi arm64 1.68.6-13build4 [790 kB]
788s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-common all 4.1.6-5.1ubuntu3 [169 kB]
788s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-bin arm64 4.1.6-5.1ubuntu3 [113 kB]
788s Get:254 http://ftpmaster.internal/ubuntu noble/main arm64 libibverbs-dev arm64 50.0-2 [686 kB]
788s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi-dev arm64 4.1.6-5.1ubuntu3 [865 kB]
791s Preconfiguring packages ...
792s Fetched 232 MB in 11s (20.7 MB/s)
792s Selecting previously unselected package libgomp1:arm64.
792s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74759 files and directories currently installed.)
792s Preparing to unpack .../000-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
792s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
792s Selecting previously unselected package libfftw3-double3:arm64.
792s Preparing to unpack .../001-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ...
792s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ...
792s Selecting previously unselected package fonts-dejavu-mono.
792s Preparing to unpack .../002-fonts-dejavu-mono_2.37-8_all.deb ...
792s Unpacking fonts-dejavu-mono (2.37-8) ...
793s Selecting previously unselected package fonts-dejavu-core.
793s Preparing to unpack .../003-fonts-dejavu-core_2.37-8_all.deb ...
793s Unpacking fonts-dejavu-core (2.37-8) ...
794s Selecting previously unselected package fontconfig-config.
794s Preparing to unpack .../004-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
795s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
795s Selecting previously unselected package libfontconfig1:arm64.
796s Preparing to unpack .../005-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
796s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
798s Selecting previously unselected package libsharpyuv0:arm64.
798s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ...
798s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
798s Selecting previously unselected package libdav1d7:arm64.
798s Preparing to unpack .../007-libdav1d7_1.4.0-1_arm64.deb ...
798s Unpacking libdav1d7:arm64 (1.4.0-1) ...
798s Selecting previously unselected package libheif-plugin-dav1d:arm64.
799s Preparing to unpack .../008-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ...
799s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ...
799s Selecting previously unselected package libde265-0:arm64.
799s Preparing to unpack .../009-libde265-0_1.0.15-1_arm64.deb ...
799s Unpacking libde265-0:arm64 (1.0.15-1) ...
799s Selecting previously unselected package libheif-plugin-libde265:arm64.
799s Preparing to unpack .../010-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ...
799s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ...
799s Selecting previously unselected package libheif1:arm64.
799s Preparing to unpack .../011-libheif1_1.17.6-1ubuntu1_arm64.deb ...
799s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ...
799s Selecting previously unselected package libjbig0:arm64.
799s Preparing to unpack .../012-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
799s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
799s Selecting previously unselected package libjpeg-turbo8:arm64.
799s Preparing to unpack .../013-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
799s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
799s Selecting previously unselected package libjpeg8:arm64.
799s Preparing to unpack .../014-libjpeg8_8c-2ubuntu11_arm64.deb ...
799s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
799s Selecting previously unselected package liblcms2-2:arm64.
799s Preparing to unpack .../015-liblcms2-2_2.14-2_arm64.deb ...
799s Unpacking liblcms2-2:arm64 (2.14-2) ...
799s Selecting previously unselected package liblqr-1-0:arm64.
800s Preparing to unpack .../016-liblqr-1-0_0.4.2-2.1_arm64.deb ...
800s Unpacking liblqr-1-0:arm64 (0.4.2-2.1) ...
800s Selecting previously unselected package libltdl7:arm64.
800s Preparing to unpack .../017-libltdl7_2.4.7-7_arm64.deb ...
800s Unpacking libltdl7:arm64 (2.4.7-7) ...
800s Selecting previously unselected package libopenjp2-7:arm64.
800s Preparing to unpack .../018-libopenjp2-7_2.5.0-2_arm64.deb ...
800s Unpacking libopenjp2-7:arm64 (2.5.0-2) ...
800s Selecting previously unselected package libraw23:arm64.
800s Preparing to unpack .../019-libraw23_0.21.2-2_arm64.deb ...
800s Unpacking libraw23:arm64 (0.21.2-2) ...
800s Selecting previously unselected package libdeflate0:arm64.
800s Preparing to unpack .../020-libdeflate0_1.19-1_arm64.deb ...
800s Unpacking libdeflate0:arm64 (1.19-1) ...
800s Selecting previously unselected package liblerc4:arm64.
800s Preparing to unpack .../021-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
800s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
800s Selecting previously unselected package libwebp7:arm64.
800s Preparing to unpack .../022-libwebp7_1.3.2-0.4_arm64.deb ...
800s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
800s Selecting previously unselected package libtiff6:arm64.
801s Preparing to unpack .../023-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
801s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
801s Selecting previously unselected package libwebpdemux2:arm64.
801s Preparing to unpack .../024-libwebpdemux2_1.3.2-0.4_arm64.deb ...
801s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ...
801s Selecting previously unselected package libwebpmux3:arm64.
801s Preparing to unpack .../025-libwebpmux3_1.3.2-0.4_arm64.deb ...
801s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ...
801s Selecting previously unselected package imagemagick-6-common.
801s Preparing to unpack .../026-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5_all.deb ...
801s Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5) ...
801s Selecting previously unselected package libmagickcore-6.q16-7:arm64.
801s Preparing to unpack .../027-libmagickcore-6.q16-7_8%3a6.9.12.98+dfsg1-5_arm64.deb ...
801s Unpacking libmagickcore-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ...
801s Selecting previously unselected package libmagickwand-6.q16-7:arm64.
801s Preparing to unpack .../028-libmagickwand-6.q16-7_8%3a6.9.12.98+dfsg1-5_arm64.deb ...
801s Unpacking libmagickwand-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ...
801s Selecting previously unselected package libgdk-pixbuf2.0-common.
802s Preparing to unpack .../029-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ...
802s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
802s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64.
802s Preparing to unpack .../030-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ...
802s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ...
802s Selecting previously unselected package gtk-update-icon-cache.
802s Preparing to unpack .../031-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ...
802s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ...
802s Selecting previously unselected package hicolor-icon-theme.
802s Preparing to unpack .../032-hicolor-icon-theme_0.17-2_all.deb ...
802s Unpacking hicolor-icon-theme (0.17-2) ...
802s Selecting previously unselected package humanity-icon-theme.
802s Preparing to unpack .../033-humanity-icon-theme_0.6.16_all.deb ...
802s Unpacking humanity-icon-theme (0.6.16) ...
802s Selecting previously unselected package ubuntu-mono.
803s Preparing to unpack .../034-ubuntu-mono_24.04-0ubuntu1_all.deb ...
803s Unpacking ubuntu-mono (24.04-0ubuntu1) ...
803s Selecting previously unselected package adwaita-icon-theme.
803s Preparing to unpack .../035-adwaita-icon-theme_46~rc-1_all.deb ...
803s Unpacking adwaita-icon-theme (46~rc-1) ...
803s Selecting previously unselected package at-spi2-common.
803s Preparing to unpack .../036-at-spi2-common_2.50.0-1_all.deb ...
803s Unpacking at-spi2-common (2.50.0-1) ...
803s Selecting previously unselected package m4.
803s Preparing to unpack .../037-m4_1.4.19-4_arm64.deb ...
803s Unpacking m4 (1.4.19-4) ...
803s Selecting previously unselected package autoconf.
803s Preparing to unpack .../038-autoconf_2.71-3_all.deb ...
803s Unpacking autoconf (2.71-3) ...
803s Selecting previously unselected package autotools-dev.
803s Preparing to unpack .../039-autotools-dev_20220109.1_all.deb ...
803s Unpacking autotools-dev (20220109.1) ...
803s Selecting previously unselected package automake.
804s Preparing to unpack .../040-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
804s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
804s Selecting previously unselected package libisl23:arm64.
804s Preparing to unpack .../041-libisl23_0.26-3_arm64.deb ...
804s Unpacking libisl23:arm64 (0.26-3) ...
804s Selecting previously unselected package libmpc3:arm64.
804s Preparing to unpack .../042-libmpc3_1.3.1-1_arm64.deb ...
804s Unpacking libmpc3:arm64 (1.3.1-1) ...
804s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
804s Preparing to unpack .../043-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
804s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
804s Selecting previously unselected package libdconf1:arm64.
804s Preparing to unpack .../044-libdconf1_0.40.0-4_arm64.deb ...
804s Unpacking libdconf1:arm64 (0.40.0-4) ...
804s Selecting previously unselected package dconf-service.
805s Preparing to unpack .../045-dconf-service_0.40.0-4_arm64.deb ...
805s Unpacking dconf-service (0.40.0-4) ...
805s Selecting previously unselected package dconf-gsettings-backend:arm64.
805s Preparing to unpack .../046-dconf-gsettings-backend_0.40.0-4_arm64.deb ...
805s Unpacking dconf-gsettings-backend:arm64 (0.40.0-4) ...
805s Selecting previously unselected package fontconfig.
805s Preparing to unpack .../047-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
805s Unpacking fontconfig (2.15.0-1ubuntu1) ...
805s Selecting previously unselected package libcc1-0:arm64.
805s Preparing to unpack .../048-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
805s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
805s Selecting previously unselected package libitm1:arm64.
810s Preparing to unpack .../049-libitm1_14-20240303-1ubuntu1_arm64.deb ...
810s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
811s Selecting previously unselected package libatomic1:arm64.
811s Preparing to unpack .../050-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
811s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
811s Selecting previously unselected package libasan8:arm64.
812s Preparing to unpack .../051-libasan8_14-20240303-1ubuntu1_arm64.deb ...
812s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
812s Selecting previously unselected package liblsan0:arm64.
812s Preparing to unpack .../052-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
812s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
812s Selecting previously unselected package libtsan2:arm64.
812s Preparing to unpack .../053-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
812s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
812s Selecting previously unselected package libubsan1:arm64.
813s Preparing to unpack .../054-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
813s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
813s Selecting previously unselected package libhwasan0:arm64.
813s Preparing to unpack .../055-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
813s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
813s Selecting previously unselected package libgcc-13-dev:arm64.
813s Preparing to unpack .../056-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
813s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
813s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
813s Preparing to unpack .../057-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
813s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
813s Selecting previously unselected package gcc-13.
813s Preparing to unpack .../058-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
813s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
813s Selecting previously unselected package libgfortran5:arm64.
814s Preparing to unpack .../059-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
814s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
814s Selecting previously unselected package libgfortran-13-dev:arm64.
814s Preparing to unpack .../060-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
814s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
814s Selecting previously unselected package libc-dev-bin.
814s Preparing to unpack .../061-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
814s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
814s Selecting previously unselected package linux-libc-dev:arm64.
814s Preparing to unpack .../062-linux-libc-dev_6.8.0-11.11_arm64.deb ...
814s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
814s Selecting previously unselected package libcrypt-dev:arm64.
815s Preparing to unpack .../063-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
815s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
815s Selecting previously unselected package libtirpc-dev:arm64.
815s Preparing to unpack .../064-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ...
815s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
815s Selecting previously unselected package libnsl-dev:arm64.
815s Preparing to unpack .../065-libnsl-dev_1.3.0-3_arm64.deb ...
815s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
815s Selecting previously unselected package rpcsvc-proto.
816s Preparing to unpack .../066-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
816s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
816s Selecting previously unselected package libc6-dev:arm64.
816s Preparing to unpack .../067-libc6-dev_2.39-0ubuntu2_arm64.deb ...
816s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
817s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
817s Preparing to unpack .../068-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
817s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
817s Selecting previously unselected package gfortran-13.
817s Preparing to unpack .../069-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
817s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
817s Selecting previously unselected package aglfn.
817s Preparing to unpack .../070-aglfn_1.7+git20191031.4036a9c-2_all.deb ...
817s Unpacking aglfn (1.7+git20191031.4036a9c-2) ...
817s Selecting previously unselected package gnuplot-data.
818s Preparing to unpack .../071-gnuplot-data_5.4.4+dfsg1-2build1_all.deb ...
818s Unpacking gnuplot-data (5.4.4+dfsg1-2build1) ...
818s Selecting previously unselected package libpixman-1-0:arm64.
818s Preparing to unpack .../072-libpixman-1-0_0.42.2-1_arm64.deb ...
818s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
818s Selecting previously unselected package libxcb-render0:arm64.
818s Preparing to unpack .../073-libxcb-render0_1.15-1_arm64.deb ...
818s Unpacking libxcb-render0:arm64 (1.15-1) ...
819s Selecting previously unselected package libxcb-shm0:arm64.
819s Preparing to unpack .../074-libxcb-shm0_1.15-1_arm64.deb ...
819s Unpacking libxcb-shm0:arm64 (1.15-1) ...
819s Selecting previously unselected package libxrender1:arm64.
819s Preparing to unpack .../075-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
819s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
819s Selecting previously unselected package libcairo2:arm64.
819s Preparing to unpack .../076-libcairo2_1.18.0-1_arm64.deb ...
819s Unpacking libcairo2:arm64 (1.18.0-1) ...
819s Selecting previously unselected package libxpm4:arm64.
820s Preparing to unpack .../077-libxpm4_1%3a3.5.17-1_arm64.deb ...
820s Unpacking libxpm4:arm64 (1:3.5.17-1) ...
820s Selecting previously unselected package libgd3:arm64.
820s Preparing to unpack .../078-libgd3_2.3.3-9ubuntu1_arm64.deb ...
820s Unpacking libgd3:arm64 (2.3.3-9ubuntu1) ...
820s Selecting previously unselected package liblua5.4-0:arm64.
820s Preparing to unpack .../079-liblua5.4-0_5.4.6-3_arm64.deb ...
820s Unpacking liblua5.4-0:arm64 (5.4.6-3) ...
820s Selecting previously unselected package libgraphite2-3:arm64.
820s Preparing to unpack .../080-libgraphite2-3_1.3.14-2_arm64.deb ...
820s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
820s Selecting previously unselected package libharfbuzz0b:arm64.
820s Preparing to unpack .../081-libharfbuzz0b_8.3.0-2_arm64.deb ...
820s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
820s Selecting previously unselected package libthai-data.
820s Preparing to unpack .../082-libthai-data_0.1.29-2_all.deb ...
820s Unpacking libthai-data (0.1.29-2) ...
820s Selecting previously unselected package libdatrie1:arm64.
821s Preparing to unpack .../083-libdatrie1_0.2.13-3_arm64.deb ...
821s Unpacking libdatrie1:arm64 (0.2.13-3) ...
821s Selecting previously unselected package libthai0:arm64.
821s Preparing to unpack .../084-libthai0_0.1.29-2_arm64.deb ...
821s Unpacking libthai0:arm64 (0.1.29-2) ...
821s Selecting previously unselected package libpango-1.0-0:arm64.
822s Preparing to unpack .../085-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
822s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
822s Selecting previously unselected package libpangoft2-1.0-0:arm64.
822s Preparing to unpack .../086-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
822s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
822s Selecting previously unselected package libpangocairo-1.0-0:arm64.
822s Preparing to unpack .../087-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
822s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
822s Selecting previously unselected package libdouble-conversion3:arm64.
822s Preparing to unpack .../088-libdouble-conversion3_3.3.0-1_arm64.deb ...
822s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ...
822s Selecting previously unselected package libpcre2-16-0:arm64.
822s Preparing to unpack .../089-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
822s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
822s Selecting previously unselected package libqt5core5a:arm64.
822s Preparing to unpack .../090-libqt5core5a_5.15.12+dfsg-3ubuntu1_arm64.deb ...
822s Unpacking libqt5core5a:arm64 (5.15.12+dfsg-3ubuntu1) ...
822s Selecting previously unselected package libglvnd0:arm64.
822s Preparing to unpack .../091-libglvnd0_1.7.0-1_arm64.deb ...
822s Unpacking libglvnd0:arm64 (1.7.0-1) ...
822s Selecting previously unselected package libwayland-server0:arm64.
822s Preparing to unpack .../092-libwayland-server0_1.22.0-2.1_arm64.deb ...
822s Unpacking libwayland-server0:arm64 (1.22.0-2.1) ...
823s Selecting previously unselected package libxcb-randr0:arm64.
823s Preparing to unpack .../093-libxcb-randr0_1.15-1_arm64.deb ...
823s Unpacking libxcb-randr0:arm64 (1.15-1) ...
823s Selecting previously unselected package libgbm1:arm64.
823s Preparing to unpack .../094-libgbm1_24.0.1-1ubuntu1_arm64.deb ...
823s Unpacking libgbm1:arm64 (24.0.1-1ubuntu1) ...
823s Selecting previously unselected package libglapi-mesa:arm64.
823s Preparing to unpack .../095-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ...
823s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ...
823s Selecting previously unselected package libwayland-client0:arm64.
823s Preparing to unpack .../096-libwayland-client0_1.22.0-2.1_arm64.deb ...
823s Unpacking libwayland-client0:arm64 (1.22.0-2.1) ...
823s Selecting previously unselected package libx11-xcb1:arm64.
823s Preparing to unpack .../097-libx11-xcb1_2%3a1.8.7-1_arm64.deb ...
823s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ...
823s Selecting previously unselected package libxcb-dri2-0:arm64.
823s Preparing to unpack .../098-libxcb-dri2-0_1.15-1_arm64.deb ...
823s Unpacking libxcb-dri2-0:arm64 (1.15-1) ...
823s Selecting previously unselected package libxcb-dri3-0:arm64.
823s Preparing to unpack .../099-libxcb-dri3-0_1.15-1_arm64.deb ...
823s Unpacking libxcb-dri3-0:arm64 (1.15-1) ...
823s Selecting previously unselected package libxcb-present0:arm64.
823s Preparing to unpack .../100-libxcb-present0_1.15-1_arm64.deb ...
823s Unpacking libxcb-present0:arm64 (1.15-1) ...
823s Selecting previously unselected package libxcb-sync1:arm64.
823s Preparing to unpack .../101-libxcb-sync1_1.15-1_arm64.deb ...
823s Unpacking libxcb-sync1:arm64 (1.15-1) ...
823s Selecting previously unselected package libxcb-xfixes0:arm64.
823s Preparing to unpack .../102-libxcb-xfixes0_1.15-1_arm64.deb ...
823s Unpacking libxcb-xfixes0:arm64 (1.15-1) ...
823s Selecting previously unselected package libxshmfence1:arm64.
823s Preparing to unpack .../103-libxshmfence1_1.3-1build4_arm64.deb ...
823s Unpacking libxshmfence1:arm64 (1.3-1build4) ...
823s Selecting previously unselected package libegl-mesa0:arm64.
823s Preparing to unpack .../104-libegl-mesa0_24.0.1-1ubuntu1_arm64.deb ...
823s Unpacking libegl-mesa0:arm64 (24.0.1-1ubuntu1) ...
823s Selecting previously unselected package libegl1:arm64.
823s Preparing to unpack .../105-libegl1_1.7.0-1_arm64.deb ...
823s Unpacking libegl1:arm64 (1.7.0-1) ...
823s Selecting previously unselected package libxcb-glx0:arm64.
823s Preparing to unpack .../106-libxcb-glx0_1.15-1_arm64.deb ...
823s Unpacking libxcb-glx0:arm64 (1.15-1) ...
823s Selecting previously unselected package libxfixes3:arm64.
823s Preparing to unpack .../107-libxfixes3_1%3a6.0.0-2_arm64.deb ...
823s Unpacking libxfixes3:arm64 (1:6.0.0-2) ...
823s Selecting previously unselected package libxxf86vm1:arm64.
824s Preparing to unpack .../108-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ...
824s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ...
824s Selecting previously unselected package libvulkan1:arm64.
824s Preparing to unpack .../109-libvulkan1_1.3.275.0-1_arm64.deb ...
824s Unpacking libvulkan1:arm64 (1.3.275.0-1) ...
824s Selecting previously unselected package libdrm-amdgpu1:arm64.
824s Preparing to unpack .../110-libdrm-amdgpu1_2.4.120-2_arm64.deb ...
824s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ...
824s Selecting previously unselected package libdrm-nouveau2:arm64.
824s Preparing to unpack .../111-libdrm-nouveau2_2.4.120-2_arm64.deb ...
824s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ...
824s Selecting previously unselected package libdrm-radeon1:arm64.
824s Preparing to unpack .../112-libdrm-radeon1_2.4.120-2_arm64.deb ...
824s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ...
824s Selecting previously unselected package libllvm17:arm64.
824s Preparing to unpack .../113-libllvm17_1%3a17.0.6-5build1_arm64.deb ...
824s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ...
825s Selecting previously unselected package libgl1-mesa-dri:arm64.
825s Preparing to unpack .../114-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ...
825s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ...
825s Selecting previously unselected package libglx-mesa0:arm64.
826s Preparing to unpack .../115-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ...
826s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ...
826s Selecting previously unselected package libglx0:arm64.
826s Preparing to unpack .../116-libglx0_1.7.0-1_arm64.deb ...
826s Unpacking libglx0:arm64 (1.7.0-1) ...
826s Selecting previously unselected package libgl1:arm64.
826s Preparing to unpack .../117-libgl1_1.7.0-1_arm64.deb ...
826s Unpacking libgl1:arm64 (1.7.0-1) ...
826s Selecting previously unselected package x11-common.
826s Preparing to unpack .../118-x11-common_1%3a7.7+23ubuntu2_all.deb ...
826s Unpacking x11-common (1:7.7+23ubuntu2) ...
826s Selecting previously unselected package libice6:arm64.
826s Preparing to unpack .../119-libice6_2%3a1.0.10-1build2_arm64.deb ...
826s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
826s Selecting previously unselected package libmtdev1:arm64.
826s Preparing to unpack .../120-libmtdev1_1.1.6-1build4_arm64.deb ...
826s Unpacking libmtdev1:arm64 (1.1.6-1build4) ...
826s Selecting previously unselected package libwacom-common.
826s Preparing to unpack .../121-libwacom-common_2.10.0-1_all.deb ...
826s Unpacking libwacom-common (2.10.0-1) ...
827s Selecting previously unselected package libwacom9:arm64.
827s Preparing to unpack .../122-libwacom9_2.10.0-1_arm64.deb ...
827s Unpacking libwacom9:arm64 (2.10.0-1) ...
827s Selecting previously unselected package libinput-bin.
827s Preparing to unpack .../123-libinput-bin_1.25.0-1_arm64.deb ...
827s Unpacking libinput-bin (1.25.0-1) ...
827s Selecting previously unselected package libinput10:arm64.
827s Preparing to unpack .../124-libinput10_1.25.0-1_arm64.deb ...
827s Unpacking libinput10:arm64 (1.25.0-1) ...
827s Selecting previously unselected package libmd4c0:arm64.
827s Preparing to unpack .../125-libmd4c0_0.4.8-1_arm64.deb ...
827s Unpacking libmd4c0:arm64 (0.4.8-1) ...
827s Selecting previously unselected package libqt5dbus5:arm64.
827s Preparing to unpack .../126-libqt5dbus5_5.15.12+dfsg-3ubuntu1_arm64.deb ...
827s Unpacking libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ...
827s Selecting previously unselected package libqt5network5:arm64.
827s Preparing to unpack .../127-libqt5network5_5.15.12+dfsg-3ubuntu1_arm64.deb ...
827s Unpacking libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ...
827s Selecting previously unselected package libsm6:arm64.
827s Preparing to unpack .../128-libsm6_2%3a1.2.3-1build2_arm64.deb ...
827s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
827s Selecting previously unselected package libxcb-icccm4:arm64.
827s Preparing to unpack .../129-libxcb-icccm4_0.4.1-1.1build2_arm64.deb ...
827s Unpacking libxcb-icccm4:arm64 (0.4.1-1.1build2) ...
827s Selecting previously unselected package libxcb-util1:arm64.
827s Preparing to unpack .../130-libxcb-util1_0.4.0-1build2_arm64.deb ...
827s Unpacking libxcb-util1:arm64 (0.4.0-1build2) ...
827s Selecting previously unselected package libxcb-image0:arm64.
827s Preparing to unpack .../131-libxcb-image0_0.4.0-2_arm64.deb ...
827s Unpacking libxcb-image0:arm64 (0.4.0-2) ...
828s Selecting previously unselected package libxcb-keysyms1:arm64.
828s Preparing to unpack .../132-libxcb-keysyms1_0.4.0-1build3_arm64.deb ...
828s Unpacking libxcb-keysyms1:arm64 (0.4.0-1build3) ...
828s Selecting previously unselected package libxcb-render-util0:arm64.
828s Preparing to unpack .../133-libxcb-render-util0_0.3.9-1build3_arm64.deb ...
828s Unpacking libxcb-render-util0:arm64 (0.3.9-1build3) ...
828s Selecting previously unselected package libxcb-shape0:arm64.
828s Preparing to unpack .../134-libxcb-shape0_1.15-1_arm64.deb ...
828s Unpacking libxcb-shape0:arm64 (1.15-1) ...
828s Selecting previously unselected package libxcb-xinerama0:arm64.
828s Preparing to unpack .../135-libxcb-xinerama0_1.15-1_arm64.deb ...
828s Unpacking libxcb-xinerama0:arm64 (1.15-1) ...
828s Selecting previously unselected package libxcb-xinput0:arm64.
828s Preparing to unpack .../136-libxcb-xinput0_1.15-1_arm64.deb ...
828s Unpacking libxcb-xinput0:arm64 (1.15-1) ...
828s Selecting previously unselected package libxcb-xkb1:arm64.
828s Preparing to unpack .../137-libxcb-xkb1_1.15-1_arm64.deb ...
828s Unpacking libxcb-xkb1:arm64 (1.15-1) ...
828s Selecting previously unselected package libxkbcommon-x11-0:arm64.
828s Preparing to unpack .../138-libxkbcommon-x11-0_1.6.0-1_arm64.deb ...
828s Unpacking libxkbcommon-x11-0:arm64 (1.6.0-1) ...
828s Selecting previously unselected package libqt5gui5:arm64.
828s Preparing to unpack .../139-libqt5gui5_5.15.12+dfsg-3ubuntu1_arm64.deb ...
828s Unpacking libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ...
828s Selecting previously unselected package libavahi-common-data:arm64.
828s Preparing to unpack .../140-libavahi-common-data_0.8-13ubuntu2_arm64.deb ...
828s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ...
828s Selecting previously unselected package libavahi-common3:arm64.
828s Preparing to unpack .../141-libavahi-common3_0.8-13ubuntu2_arm64.deb ...
828s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ...
828s Selecting previously unselected package libavahi-client3:arm64.
828s Preparing to unpack .../142-libavahi-client3_0.8-13ubuntu2_arm64.deb ...
828s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ...
828s Selecting previously unselected package libcups2:arm64.
829s Preparing to unpack .../143-libcups2_2.4.6-0ubuntu3_arm64.deb ...
829s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ...
829s Selecting previously unselected package libqt5widgets5:arm64.
829s Preparing to unpack .../144-libqt5widgets5_5.15.12+dfsg-3ubuntu1_arm64.deb ...
829s Unpacking libqt5widgets5:arm64 (5.15.12+dfsg-3ubuntu1) ...
829s Selecting previously unselected package libqt5printsupport5:arm64.
829s Preparing to unpack .../145-libqt5printsupport5_5.15.12+dfsg-3ubuntu1_arm64.deb ...
829s Unpacking libqt5printsupport5:arm64 (5.15.12+dfsg-3ubuntu1) ...
829s Selecting previously unselected package libqt5svg5:arm64.
829s Preparing to unpack .../146-libqt5svg5_5.15.12-1_arm64.deb ...
829s Unpacking libqt5svg5:arm64 (5.15.12-1) ...
829s Selecting previously unselected package libpcre2-32-0:arm64.
829s Preparing to unpack .../147-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
829s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
829s Selecting previously unselected package libwxbase3.2-1:arm64.
829s Preparing to unpack .../148-libwxbase3.2-1_3.2.4+dfsg-3_arm64.deb ...
829s Unpacking libwxbase3.2-1:arm64 (3.2.4+dfsg-3) ...
829s Selecting previously unselected package libatk1.0-0:arm64.
830s Preparing to unpack .../149-libatk1.0-0_2.50.0-1_arm64.deb ...
830s Unpacking libatk1.0-0:arm64 (2.50.0-1) ...
830s Selecting previously unselected package libxi6:arm64.
830s Preparing to unpack .../150-libxi6_2%3a1.8.1-1_arm64.deb ...
830s Unpacking libxi6:arm64 (2:1.8.1-1) ...
830s Selecting previously unselected package libatspi2.0-0:arm64.
831s Preparing to unpack .../151-libatspi2.0-0_2.50.0-1_arm64.deb ...
831s Unpacking libatspi2.0-0:arm64 (2.50.0-1) ...
831s Selecting previously unselected package libatk-bridge2.0-0:arm64.
832s Preparing to unpack .../152-libatk-bridge2.0-0_2.50.0-1_arm64.deb ...
832s Unpacking libatk-bridge2.0-0:arm64 (2.50.0-1) ...
832s Selecting previously unselected package libcairo-gobject2:arm64.
832s Preparing to unpack .../153-libcairo-gobject2_1.18.0-1_arm64.deb ...
832s Unpacking libcairo-gobject2:arm64 (1.18.0-1) ...
832s Selecting previously unselected package libcolord2:arm64.
832s Preparing to unpack .../154-libcolord2_1.4.7-1_arm64.deb ...
832s Unpacking libcolord2:arm64 (1.4.7-1) ...
832s Selecting previously unselected package libepoxy0:arm64.
832s Preparing to unpack .../155-libepoxy0_1.5.10-1_arm64.deb ...
832s Unpacking libepoxy0:arm64 (1.5.10-1) ...
832s Selecting previously unselected package libwayland-cursor0:arm64.
832s Preparing to unpack .../156-libwayland-cursor0_1.22.0-2.1_arm64.deb ...
832s Unpacking libwayland-cursor0:arm64 (1.22.0-2.1) ...
833s Selecting previously unselected package libwayland-egl1:arm64.
833s Preparing to unpack .../157-libwayland-egl1_1.22.0-2.1_arm64.deb ...
833s Unpacking libwayland-egl1:arm64 (1.22.0-2.1) ...
833s Selecting previously unselected package libxcomposite1:arm64.
833s Preparing to unpack .../158-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ...
833s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ...
833s Selecting previously unselected package libxcursor1:arm64.
833s Preparing to unpack .../159-libxcursor1_1%3a1.2.1-1_arm64.deb ...
833s Unpacking libxcursor1:arm64 (1:1.2.1-1) ...
833s Selecting previously unselected package libxdamage1:arm64.
833s Preparing to unpack .../160-libxdamage1_1%3a1.1.6-1_arm64.deb ...
833s Unpacking libxdamage1:arm64 (1:1.1.6-1) ...
833s Selecting previously unselected package libxinerama1:arm64.
833s Preparing to unpack .../161-libxinerama1_2%3a1.1.4-3_arm64.deb ...
833s Unpacking libxinerama1:arm64 (2:1.1.4-3) ...
833s Selecting previously unselected package libxrandr2:arm64.
833s Preparing to unpack .../162-libxrandr2_2%3a1.5.2-2_arm64.deb ...
833s Unpacking libxrandr2:arm64 (2:1.5.2-2) ...
833s Selecting previously unselected package libgtk-3-common.
833s Preparing to unpack .../163-libgtk-3-common_3.24.40-2ubuntu1_all.deb ...
833s Unpacking libgtk-3-common (3.24.40-2ubuntu1) ...
833s Selecting previously unselected package libgtk-3-0:arm64.
833s Preparing to unpack .../164-libgtk-3-0_3.24.40-2ubuntu1_arm64.deb ...
833s Unpacking libgtk-3-0:arm64 (3.24.40-2ubuntu1) ...
833s Selecting previously unselected package libnotify4:arm64.
833s Preparing to unpack .../165-libnotify4_0.8.3-1_arm64.deb ...
833s Unpacking libnotify4:arm64 (0.8.3-1) ...
833s Selecting previously unselected package libxtst6:arm64.
833s Preparing to unpack .../166-libxtst6_2%3a1.2.3-1.1_arm64.deb ...
833s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ...
833s Selecting previously unselected package libwxgtk3.2-1:arm64.
834s Preparing to unpack .../167-libwxgtk3.2-1_3.2.4+dfsg-3_arm64.deb ...
834s Unpacking libwxgtk3.2-1:arm64 (3.2.4+dfsg-3) ...
834s Selecting previously unselected package gnuplot-qt.
834s Preparing to unpack .../168-gnuplot-qt_5.4.4+dfsg1-2build1_arm64.deb ...
834s Unpacking gnuplot-qt (5.4.4+dfsg1-2build1) ...
835s Selecting previously unselected package gnuplot.
835s Preparing to unpack .../169-gnuplot_5.4.4+dfsg1-2build1_all.deb ...
835s Unpacking gnuplot (5.4.4+dfsg1-2build1) ...
835s Selecting previously unselected package icu-devtools.
835s Preparing to unpack .../170-icu-devtools_74.2-1ubuntu1_arm64.deb ...
835s Unpacking icu-devtools (74.2-1ubuntu1) ...
835s Selecting previously unselected package imagemagick-6.q16.
835s Preparing to unpack .../171-imagemagick-6.q16_8%3a6.9.12.98+dfsg1-5_arm64.deb ...
835s Unpacking imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ...
835s Selecting previously unselected package imagemagick.
835s Preparing to unpack .../172-imagemagick_8%3a6.9.12.98+dfsg1-5_arm64.deb ...
835s Unpacking imagemagick (8:6.9.12.98+dfsg1-5) ...
835s Selecting previously unselected package libamd-comgr2:arm64.
836s Preparing to unpack .../173-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ...
836s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ...
836s Selecting previously unselected package libhsakmt1:arm64.
836s Preparing to unpack .../174-libhsakmt1_5.7.0-1_arm64.deb ...
836s Unpacking libhsakmt1:arm64 (5.7.0-1) ...
836s Selecting previously unselected package libhsa-runtime64-1.
836s Preparing to unpack .../175-libhsa-runtime64-1_5.7.1-1_arm64.deb ...
836s Unpacking libhsa-runtime64-1 (5.7.1-1) ...
836s Selecting previously unselected package libamdhip64-5.
836s Preparing to unpack .../176-libamdhip64-5_5.2.3-12_arm64.deb ...
836s Unpacking libamdhip64-5 (5.2.3-12) ...
836s Selecting previously unselected package libio-string-perl.
836s Preparing to unpack .../177-libio-string-perl_1.08-4_all.deb ...
836s Unpacking libio-string-perl (1.08-4) ...
836s Selecting previously unselected package libdata-stag-perl.
836s Preparing to unpack .../178-libdata-stag-perl_0.14-3_all.deb ...
836s Unpacking libdata-stag-perl (0.14-3) ...
836s Selecting previously unselected package libbio-perl-perl.
836s Preparing to unpack .../179-libbio-perl-perl_1.7.8-1_all.deb ...
836s Unpacking libbio-perl-perl (1.7.8-1) ...
836s Selecting previously unselected package libblas3:arm64.
837s Preparing to unpack .../180-libblas3_3.12.0-3_arm64.deb ...
837s Unpacking libblas3:arm64 (3.12.0-3) ...
837s Selecting previously unselected package libstdc++-13-dev:arm64.
837s Preparing to unpack .../181-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
837s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
837s Selecting previously unselected package libboost1.83-dev:arm64.
837s Preparing to unpack .../182-libboost1.83-dev_1.83.0-2.1ubuntu2_arm64.deb ...
837s Unpacking libboost1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
839s Selecting previously unselected package libboost-atomic1.83.0:arm64.
839s Preparing to unpack .../183-libboost-atomic1.83.0_1.83.0-2.1ubuntu2_arm64.deb ...
839s Unpacking libboost-atomic1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
839s Selecting previously unselected package libboost-atomic1.83-dev:arm64.
839s Preparing to unpack .../184-libboost-atomic1.83-dev_1.83.0-2.1ubuntu2_arm64.deb ...
839s Unpacking libboost-atomic1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
839s Selecting previously unselected package libboost-filesystem1.83.0:arm64.
840s Preparing to unpack .../185-libboost-filesystem1.83.0_1.83.0-2.1ubuntu2_arm64.deb ...
840s Unpacking libboost-filesystem1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
840s Selecting previously unselected package libboost-system1.83.0:arm64.
840s Preparing to unpack .../186-libboost-system1.83.0_1.83.0-2.1ubuntu2_arm64.deb ...
840s Unpacking libboost-system1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
840s Selecting previously unselected package libboost-system1.83-dev:arm64.
840s Preparing to unpack .../187-libboost-system1.83-dev_1.83.0-2.1ubuntu2_arm64.deb ...
840s Unpacking libboost-system1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
840s Selecting previously unselected package libboost-filesystem1.83-dev:arm64.
840s Preparing to unpack .../188-libboost-filesystem1.83-dev_1.83.0-2.1ubuntu2_arm64.deb ...
840s Unpacking libboost-filesystem1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
840s Selecting previously unselected package libboost-filesystem-dev:arm64.
840s Preparing to unpack .../189-libboost-filesystem-dev_1.83.0.1ubuntu2_arm64.deb ...
840s Unpacking libboost-filesystem-dev:arm64 (1.83.0.1ubuntu2) ...
840s Selecting previously unselected package libboost-regex1.83.0:arm64.
840s Preparing to unpack .../190-libboost-regex1.83.0_1.83.0-2.1ubuntu2_arm64.deb ...
840s Unpacking libboost-regex1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
840s Selecting previously unselected package libicu-dev:arm64.
840s Preparing to unpack .../191-libicu-dev_74.2-1ubuntu1_arm64.deb ...
840s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
840s Selecting previously unselected package libboost-regex1.83-dev:arm64.
840s Preparing to unpack .../192-libboost-regex1.83-dev_1.83.0-2.1ubuntu2_arm64.deb ...
840s Unpacking libboost-regex1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
840s Selecting previously unselected package libboost-iostreams1.83.0:arm64.
841s Preparing to unpack .../193-libboost-iostreams1.83.0_1.83.0-2.1ubuntu2_arm64.deb ...
841s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
841s Selecting previously unselected package libboost-iostreams1.83-dev:arm64.
841s Preparing to unpack .../194-libboost-iostreams1.83-dev_1.83.0-2.1ubuntu2_arm64.deb ...
841s Unpacking libboost-iostreams1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
841s Selecting previously unselected package libboost-iostreams-dev:arm64.
841s Preparing to unpack .../195-libboost-iostreams-dev_1.83.0.1ubuntu2_arm64.deb ...
841s Unpacking libboost-iostreams-dev:arm64 (1.83.0.1ubuntu2) ...
841s Selecting previously unselected package libboost-regex-dev:arm64.
841s Preparing to unpack .../196-libboost-regex-dev_1.83.0.1ubuntu2_arm64.deb ...
841s Unpacking libboost-regex-dev:arm64 (1.83.0.1ubuntu2) ...
841s Selecting previously unselected package libcrypto++8t64:arm64.
841s Preparing to unpack .../197-libcrypto++8t64_8.9.0-1.1_arm64.deb ...
841s Unpacking libcrypto++8t64:arm64 (8.9.0-1.1) ...
841s Selecting previously unselected package libcrypto++-dev:arm64.
841s Preparing to unpack .../198-libcrypto++-dev_8.9.0-1.1_arm64.deb ...
841s Unpacking libcrypto++-dev:arm64 (8.9.0-1.1) ...
841s Selecting previously unselected package libevent-2.1-7:arm64.
841s Preparing to unpack .../199-libevent-2.1-7_2.1.12-stable-9_arm64.deb ...
841s Unpacking libevent-2.1-7:arm64 (2.1.12-stable-9) ...
841s Selecting previously unselected package libevent-extra-2.1-7:arm64.
842s Preparing to unpack .../200-libevent-extra-2.1-7_2.1.12-stable-9_arm64.deb ...
842s Unpacking libevent-extra-2.1-7:arm64 (2.1.12-stable-9) ...
842s Selecting previously unselected package libevent-pthreads-2.1-7:arm64.
842s Preparing to unpack .../201-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ...
842s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ...
842s Selecting previously unselected package libevent-openssl-2.1-7:arm64.
842s Preparing to unpack .../202-libevent-openssl-2.1-7_2.1.12-stable-9_arm64.deb ...
842s Unpacking libevent-openssl-2.1-7:arm64 (2.1.12-stable-9) ...
842s Selecting previously unselected package libevent-dev.
842s Preparing to unpack .../203-libevent-dev_2.1.12-stable-9_arm64.deb ...
842s Unpacking libevent-dev (2.1.12-stable-9) ...
842s Selecting previously unselected package librdmacm1t64:arm64.
842s Preparing to unpack .../204-librdmacm1t64_50.0-2_arm64.deb ...
842s Unpacking librdmacm1t64:arm64 (50.0-2) ...
842s Selecting previously unselected package libfabric1:arm64.
842s Preparing to unpack .../205-libfabric1_1.17.0-3_arm64.deb ...
842s Unpacking libfabric1:arm64 (1.17.0-3) ...
842s Selecting previously unselected package libhwloc15:arm64.
842s Preparing to unpack .../206-libhwloc15_2.10.0-1_arm64.deb ...
842s Unpacking libhwloc15:arm64 (2.10.0-1) ...
842s Selecting previously unselected package libjs-jquery.
842s Preparing to unpack .../207-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
842s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
843s Selecting previously unselected package libjs-jquery-ui.
843s Preparing to unpack .../208-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
843s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
843s Selecting previously unselected package liblapack3:arm64.
844s Preparing to unpack .../209-liblapack3_3.12.0-3_arm64.deb ...
844s Unpacking liblapack3:arm64 (3.12.0-3) ...
844s Selecting previously unselected package libltdl-dev:arm64.
845s Preparing to unpack .../210-libltdl-dev_2.4.7-7_arm64.deb ...
845s Unpacking libltdl-dev:arm64 (2.4.7-7) ...
845s Selecting previously unselected package libnl-3-dev:arm64.
845s Preparing to unpack .../211-libnl-3-dev_3.7.0-0.3_arm64.deb ...
845s Unpacking libnl-3-dev:arm64 (3.7.0-0.3) ...
845s Selecting previously unselected package libnl-route-3-dev:arm64.
845s Preparing to unpack .../212-libnl-route-3-dev_3.7.0-0.3_arm64.deb ...
845s Unpacking libnl-route-3-dev:arm64 (3.7.0-0.3) ...
845s Selecting previously unselected package libmunge2:arm64.
846s Preparing to unpack .../213-libmunge2_0.5.15-3ubuntu1_arm64.deb ...
846s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ...
846s Selecting previously unselected package libpciaccess0:arm64.
846s Preparing to unpack .../214-libpciaccess0_0.17-3_arm64.deb ...
846s Unpacking libpciaccess0:arm64 (0.17-3) ...
846s Selecting previously unselected package libxnvctrl0:arm64.
846s Preparing to unpack .../215-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ...
846s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ...
846s Selecting previously unselected package ocl-icd-libopencl1:arm64.
846s Preparing to unpack .../216-ocl-icd-libopencl1_2.3.2-1_arm64.deb ...
846s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ...
846s Selecting previously unselected package libhwloc-plugins:arm64.
846s Preparing to unpack .../217-libhwloc-plugins_2.10.0-1_arm64.deb ...
846s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ...
846s Selecting previously unselected package libpmix2t64:arm64.
846s Preparing to unpack .../218-libpmix2t64_5.0.1-4.1_arm64.deb ...
846s Unpacking libpmix2t64:arm64 (5.0.1-4.1) ...
846s Selecting previously unselected package libucx0:arm64.
846s Preparing to unpack .../219-libucx0_1.16.0+ds-4_arm64.deb ...
846s Unpacking libucx0:arm64 (1.16.0+ds-4) ...
846s Selecting previously unselected package libopenmpi3t64:arm64.
846s Preparing to unpack .../220-libopenmpi3t64_4.1.6-5.1ubuntu3_arm64.deb ...
846s Unpacking libopenmpi3t64:arm64 (4.1.6-5.1ubuntu3) ...
846s Selecting previously unselected package libpaper1:arm64.
846s Preparing to unpack .../221-libpaper1_1.1.29_arm64.deb ...
846s Unpacking libpaper1:arm64 (1.1.29) ...
846s Selecting previously unselected package libpaper-utils.
846s Preparing to unpack .../222-libpaper-utils_1.1.29_arm64.deb ...
846s Unpacking libpaper-utils (1.1.29) ...
847s Selecting previously unselected package libnuma-dev:arm64.
847s Preparing to unpack .../223-libnuma-dev_2.0.18-1_arm64.deb ...
847s Unpacking libnuma-dev:arm64 (2.0.18-1) ...
847s Selecting previously unselected package libhwloc-dev:arm64.
847s Preparing to unpack .../224-libhwloc-dev_2.10.0-1_arm64.deb ...
847s Unpacking libhwloc-dev:arm64 (2.10.0-1) ...
847s Selecting previously unselected package zlib1g-dev:arm64.
847s Preparing to unpack .../225-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
847s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
847s Selecting previously unselected package libpmix-dev:arm64.
848s Preparing to unpack .../226-libpmix-dev_5.0.1-4.1_arm64.deb ...
848s Unpacking libpmix-dev:arm64 (5.0.1-4.1) ...
848s Selecting previously unselected package libpstreams-dev.
848s Preparing to unpack .../227-libpstreams-dev_1.0.3-1_all.deb ...
848s Unpacking libpstreams-dev (1.0.3-1) ...
848s Selecting previously unselected package libtcl8.6:arm64.
848s Preparing to unpack .../228-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
848s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
848s Selecting previously unselected package libterm-readkey-perl.
848s Preparing to unpack .../229-libterm-readkey-perl_2.38-2build2_arm64.deb ...
848s Unpacking libterm-readkey-perl (2.38-2build2) ...
848s Selecting previously unselected package libtext-wrapper-perl.
848s Preparing to unpack .../230-libtext-wrapper-perl_1.05-4_all.deb ...
848s Unpacking libtext-wrapper-perl (1.05-4) ...
848s Selecting previously unselected package libxft2:arm64.
848s Preparing to unpack .../231-libxft2_2.3.6-1_arm64.deb ...
848s Unpacking libxft2:arm64 (2.3.6-1) ...
848s Selecting previously unselected package libxss1:arm64.
848s Preparing to unpack .../232-libxss1_1%3a1.2.3-1build2_arm64.deb ...
848s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
848s Selecting previously unselected package libtk8.6:arm64.
849s Preparing to unpack .../233-libtk8.6_8.6.13-2_arm64.deb ...
849s Unpacking libtk8.6:arm64 (8.6.13-2) ...
849s Selecting previously unselected package libxt6:arm64.
849s Preparing to unpack .../234-libxt6_1%3a1.2.1-1.1_arm64.deb ...
849s Unpacking libxt6:arm64 (1:1.2.1-1.1) ...
849s Selecting previously unselected package zip.
851s Preparing to unpack .../235-zip_3.0-13_arm64.deb ...
851s Unpacking zip (3.0-13) ...
851s Selecting previously unselected package unzip.
860s Preparing to unpack .../236-unzip_6.0-28ubuntu3_arm64.deb ...
860s Unpacking unzip (6.0-28ubuntu3) ...
860s Selecting previously unselected package xdg-utils.
861s Preparing to unpack .../237-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
861s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
861s Selecting previously unselected package r-base-core.
862s Preparing to unpack .../238-r-base-core_4.3.2-1build1_arm64.deb ...
862s Unpacking r-base-core (4.3.2-1build1) ...
863s Selecting previously unselected package r-cran-gtools.
863s Preparing to unpack .../239-r-cran-gtools_3.9.5-1_arm64.deb ...
863s Unpacking r-cran-gtools (3.9.5-1) ...
863s Selecting previously unselected package r-cran-bitops.
863s Preparing to unpack .../240-r-cran-bitops_1.0-7-1_arm64.deb ...
863s Unpacking r-cran-bitops (1.0-7-1) ...
863s Selecting previously unselected package r-cran-catools.
863s Preparing to unpack .../241-r-cran-catools_1.18.2-1_arm64.deb ...
863s Unpacking r-cran-catools (1.18.2-1) ...
863s Selecting previously unselected package r-cran-mass.
863s Preparing to unpack .../242-r-cran-mass_7.3-60.0.1-1_arm64.deb ...
863s Unpacking r-cran-mass (7.3-60.0.1-1) ...
863s Selecting previously unselected package r-cran-kernsmooth.
863s Preparing to unpack .../243-r-cran-kernsmooth_2.23-22-1_arm64.deb ...
863s Unpacking r-cran-kernsmooth (2.23-22-1) ...
863s Selecting previously unselected package r-cran-gdata.
864s Preparing to unpack .../244-r-cran-gdata_3.0.0-1_all.deb ...
864s Unpacking r-cran-gdata (3.0.0-1) ...
864s Selecting previously unselected package r-cran-gplots.
864s Preparing to unpack .../245-r-cran-gplots_3.1.3.1-1_all.deb ...
864s Unpacking r-cran-gplots (3.1.3.1-1) ...
865s Selecting previously unselected package r-cran-rocr.
866s Preparing to unpack .../246-r-cran-rocr_1.0-11-2build1_all.deb ...
866s Unpacking r-cran-rocr (1.0-11-2build1) ...
866s Selecting previously unselected package murasaki-common.
866s Preparing to unpack .../247-murasaki-common_1.68.6-13build4_all.deb ...
866s Unpacking murasaki-common (1.68.6-13build4) ...
866s Selecting previously unselected package murasaki.
866s Preparing to unpack .../248-murasaki_1.68.6-13build4_arm64.deb ...
866s Unpacking murasaki (1.68.6-13build4) ...
866s Selecting previously unselected package murasaki-mpi.
866s Preparing to unpack .../249-murasaki-mpi_1.68.6-13build4_arm64.deb ...
866s Unpacking murasaki-mpi (1.68.6-13build4) ...
866s Selecting previously unselected package openmpi-common.
866s Preparing to unpack .../250-openmpi-common_4.1.6-5.1ubuntu3_all.deb ...
866s Unpacking openmpi-common (4.1.6-5.1ubuntu3) ...
867s Selecting previously unselected package openmpi-bin.
867s Preparing to unpack .../251-openmpi-bin_4.1.6-5.1ubuntu3_arm64.deb ...
867s Unpacking openmpi-bin (4.1.6-5.1ubuntu3) ...
867s Selecting previously unselected package libibverbs-dev:arm64.
867s Preparing to unpack .../252-libibverbs-dev_50.0-2_arm64.deb ...
867s Unpacking libibverbs-dev:arm64 (50.0-2) ...
867s Selecting previously unselected package libopenmpi-dev:arm64.
867s Preparing to unpack .../253-libopenmpi-dev_4.1.6-5.1ubuntu3_arm64.deb ...
867s Unpacking libopenmpi-dev:arm64 (4.1.6-5.1ubuntu3) ...
867s Selecting previously unselected package autopkgtest-satdep.
867s Preparing to unpack .../254-1-autopkgtest-satdep.deb ...
867s Unpacking autopkgtest-satdep (0) ...
867s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
867s Setting up libxcb-dri3-0:arm64 (1.15-1) ...
867s Setting up liblcms2-2:arm64 (2.14-2) ...
867s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
867s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
867s Setting up libwayland-server0:arm64 (1.22.0-2.1) ...
867s Setting up libpaper1:arm64 (1.1.29) ...
868s 
868s Creating config file /etc/papersize with new version
868s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ...
868s Setting up libpciaccess0:arm64 (0.17-3) ...
868s Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5) ...
868s Setting up libdouble-conversion3:arm64 (3.3.0-1) ...
868s Setting up libevent-extra-2.1-7:arm64 (2.1.12-stable-9) ...
868s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ...
868s Setting up libxdamage1:arm64 (1:1.1.6-1) ...
868s Setting up libxcb-xfixes0:arm64 (1.15-1) ...
868s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
868s Setting up libxpm4:arm64 (1:3.5.17-1) ...
868s Setting up hicolor-icon-theme (0.17-2) ...
868s Setting up libxi6:arm64 (2:1.8.1-1) ...
868s Setting up libxcb-xinput0:arm64 (1.15-1) ...
868s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
868s Setting up libdatrie1:arm64 (0.2.13-3) ...
868s Setting up libxcb-render0:arm64 (1.15-1) ...
868s Setting up libdrm-radeon1:arm64 (2.4.120-2) ...
868s Setting up libglvnd0:arm64 (1.7.0-1) ...
868s Setting up libboost-regex1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
868s Setting up libxcb-glx0:arm64 (1.15-1) ...
868s Setting up unzip (6.0-28ubuntu3) ...
868s Setting up libboost-system1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
868s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
868s Setting up libxcb-keysyms1:arm64 (0.4.0-1build3) ...
868s Setting up libxcb-shape0:arm64 (1.15-1) ...
868s Setting up x11-common (1:7.7+23ubuntu2) ...
872s Setting up libdeflate0:arm64 (1.19-1) ...
872s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
872s Setting up libevent-openssl-2.1-7:arm64 (2.1.12-stable-9) ...
872s Setting up m4 (1.4.19-4) ...
872s Setting up libxcb-render-util0:arm64 (0.3.9-1build3) ...
872s Setting up libxcb-shm0:arm64 (1.15-1) ...
872s Setting up libxcb-icccm4:arm64 (0.4.1-1.1build2) ...
872s Setting up libpaper-utils (1.1.29) ...
872s Setting up libatspi2.0-0:arm64 (2.50.0-1) ...
872s Setting up libtext-wrapper-perl (1.05-4) ...
872s Setting up libboost-filesystem1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
872s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
872s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
872s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
872s Setting up libcolord2:arm64 (1.4.7-1) ...
872s Setting up libxcb-util1:arm64 (0.4.0-1build2) ...
872s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ...
872s Setting up libxcb-xkb1:arm64 (1.15-1) ...
872s Setting up libxcb-image0:arm64 (0.4.0-2) ...
872s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ...
872s Setting up libboost-atomic1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
872s Setting up libxcb-present0:arm64 (1.15-1) ...
872s Setting up libdconf1:arm64 (0.40.0-4) ...
872s Setting up libio-string-perl (1.08-4) ...
872s Setting up zip (3.0-13) ...
872s Setting up autotools-dev (20220109.1) ...
872s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
872s Setting up libblas3:arm64 (3.12.0-3) ...
872s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
872s Setting up libxcb-xinerama0:arm64 (1.15-1) ...
872s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
872s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
872s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ...
872s Setting up libepoxy0:arm64 (1.5.10-1) ...
872s Setting up libxfixes3:arm64 (1:6.0.0-2) ...
872s Setting up libxcb-sync1:arm64 (1.15-1) ...
872s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-2.1ubuntu2) ...
872s Setting up aglfn (1.7+git20191031.4036a9c-2) ...
872s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ...
872s Setting up libxinerama1:arm64 (2:1.1.4-3) ...
872s Setting up libxkbcommon-x11-0:arm64 (1.6.0-1) ...
872s Setting up fonts-dejavu-mono (2.37-8) ...
872s Setting up libhwloc15:arm64 (2.10.0-1) ...
872s Setting up libmpc3:arm64 (1.3.1-1) ...
872s Setting up libcrypto++8t64:arm64 (8.9.0-1.1) ...
872s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
872s Setting up libevent-2.1-7:arm64 (2.1.12-stable-9) ...
872s Setting up libxrandr2:arm64 (2:1.5.2-2) ...
872s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
872s Setting up icu-devtools (74.2-1ubuntu1) ...
872s Setting up fonts-dejavu-core (2.37-8) ...
872s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
872s Setting up libqt5core5a:arm64 (5.15.12+dfsg-3ubuntu1) ...
872s Setting up libltdl7:arm64 (2.4.7-7) ...
872s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ...
872s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ...
872s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
872s Setting up libmtdev1:arm64 (1.1.6-1build4) ...
872s Setting up libvulkan1:arm64 (1.3.275.0-1) ...
872s Setting up autoconf (2.71-3) ...
872s Setting up libwebp7:arm64 (1.3.2-0.4) ...
872s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
872s Setting up libxcb-dri2-0:arm64 (1.15-1) ...
872s Setting up libdata-stag-perl (0.14-3) ...
872s Setting up libdav1d7:arm64 (1.4.0-1) ...
872s Setting up libnl-3-dev:arm64 (3.7.0-0.3) ...
872s Setting up liblqr-1-0:arm64 (0.4.2-2.1) ...
872s Setting up libnsl-dev:arm64 (1.3.0-3) ...
872s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ...
872s Setting up libxshmfence1:arm64 (1.3-1build4) ...
872s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
872s Setting up at-spi2-common (2.50.0-1) ...
872s Setting up libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ...
872s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
872s Setting up libxcb-randr0:arm64 (1.15-1) ...
872s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
872s Setting up openmpi-common (4.1.6-5.1ubuntu3) ...
872s Setting up libmd4c0:arm64 (0.4.8-1) ...
872s Setting up librdmacm1t64:arm64 (50.0-2) ...
872s Setting up liblua5.4-0:arm64 (5.4.6-3) ...
872s Setting up libopenjp2-7:arm64 (2.5.0-2) ...
872s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
872s Setting up libthai-data (0.1.29-2) ...
872s Setting up libatk1.0-0:arm64 (2.50.0-1) ...
872s Setting up libwayland-egl1:arm64 (1.22.0-2.1) ...
872s Setting up libbio-perl-perl (1.7.8-1) ...
872s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
872s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
872s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
872s Setting up libterm-readkey-perl (2.38-2build2) ...
872s Setting up libisl23:arm64 (0.26-3) ...
872s Setting up libde265-0:arm64 (1.0.15-1) ...
872s Setting up libc-dev-bin (2.39-0ubuntu2) ...
872s Setting up libwebpmux3:arm64 (1.3.2-0.4) ...
872s Setting up libllvm17:arm64 (1:17.0.6-5build1) ...
872s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ...
872s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
872s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
872s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
872s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
872s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
872s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ...
872s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ...
872s Setting up libwacom-common (2.10.0-1) ...
872s Setting up libwayland-client0:arm64 (1.22.0-2.1) ...
872s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
872s Setting up automake (1:1.16.5-1.3ubuntu1) ...
872s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
872s Setting up libfabric1:arm64 (1.17.0-3) ...
872s Setting up gnuplot-data (5.4.4+dfsg1-2build1) ...
872s Setting up libice6:arm64 (2:1.0.10-1build2) ...
872s Setting up liblapack3:arm64 (3.12.0-3) ...
872s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
872s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
872s Setting up libgbm1:arm64 (24.0.1-1ubuntu1) ...
872s Setting up libwacom9:arm64 (2.10.0-1) ...
872s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
873s Setting up libxtst6:arm64 (2:1.2.3-1.1) ...
873s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ...
873s Setting up libxcursor1:arm64 (1:1.2.1-1) ...
873s Setting up libcrypto++-dev:arm64 (8.9.0-1.1) ...
873s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ...
873s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ...
873s Setting up dconf-service (0.40.0-4) ...
873s Setting up libhwloc-plugins:arm64 (2.10.0-1) ...
873s Setting up libwxbase3.2-1:arm64 (3.2.4+dfsg-3) ...
873s Setting up libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ...
873s Setting up libinput-bin (1.25.0-1) ...
873s Setting up libatk-bridge2.0-0:arm64 (2.50.0-1) ...
873s Setting up libnl-route-3-dev:arm64 (3.7.0-0.3) ...
873s Setting up libltdl-dev:arm64 (2.4.7-7) ...
873s Setting up libthai0:arm64 (0.1.29-2) ...
873s Setting up libegl-mesa0:arm64 (24.0.1-1ubuntu1) ...
873s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
873s Setting up libevent-dev (2.1.12-stable-9) ...
873s Setting up libpstreams-dev (1.0.3-1) ...
873s Setting up libpmix2t64:arm64 (5.0.1-4.1) ...
873s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
873s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
873s Setting up libwayland-cursor0:arm64 (1.22.0-2.1) ...
873s Setting up libegl1:arm64 (1.7.0-1) ...
873s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
873s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ...
873s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ...
873s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
873s Setting up libraw23:arm64 (0.21.2-2) ...
873s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
873s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
873s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
873s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ...
873s Setting up libhsakmt1:arm64 (5.7.0-1) ...
873s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
873s Setting up libinput10:arm64 (1.25.0-1) ...
873s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ...
873s Setting up fontconfig (2.15.0-1ubuntu1) ...
875s Regenerating fonts cache... done.
875s Setting up libxft2:arm64 (2.3.6-1) ...
875s Setting up libboost1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
875s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ...
875s Setting up libglx0:arm64 (1.7.0-1) ...
875s Setting up dconf-gsettings-backend:arm64 (0.40.0-4) ...
875s Setting up libtk8.6:arm64 (8.6.13-2) ...
875s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
875s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
875s Setting up libibverbs-dev:arm64 (50.0-2) ...
875s Setting up libcairo2:arm64 (1.18.0-1) ...
875s Setting up libnuma-dev:arm64 (2.0.18-1) ...
875s Setting up libgl1:arm64 (1.7.0-1) ...
875s Setting up libnotify4:arm64 (0.8.3-1) ...
875s Setting up libgd3:arm64 (2.3.3-9ubuntu1) ...
875s Setting up gcc-13 (13.2.0-17ubuntu2) ...
875s Setting up libboost-regex1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
875s Setting up libxt6:arm64 (1:1.2.1-1.1) ...
875s Setting up libboost-atomic1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
875s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ...
875s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
875s Setting up libhsa-runtime64-1 (5.7.1-1) ...
875s Setting up libcairo-gobject2:arm64 (1.18.0-1) ...
875s Setting up libhwloc-dev:arm64 (2.10.0-1) ...
875s Setting up libboost-system1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
875s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
875s Setting up libboost-regex-dev:arm64 (1.83.0.1ubuntu2) ...
875s Setting up libpmix-dev:arm64 (5.0.1-4.1) ...
875s Setting up libgtk-3-common (3.24.40-2ubuntu1) ...
875s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
875s Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
875s Setting up libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ...
875s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
875s Setting up libqt5widgets5:arm64 (5.15.12+dfsg-3ubuntu1) ...
875s Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-2.1ubuntu2) ...
875s Setting up libboost-iostreams-dev:arm64 (1.83.0.1ubuntu2) ...
875s Setting up libqt5printsupport5:arm64 (5.15.12+dfsg-3ubuntu1) ...
875s Setting up libamdhip64-5 (5.2.3-12) ...
875s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
875s Setting up r-base-core (4.3.2-1build1) ...
875s 
875s Creating config file /etc/R/Renviron with new version
876s Setting up libboost-filesystem-dev:arm64 (1.83.0.1ubuntu2) ...
876s Setting up libucx0:arm64 (1.16.0+ds-4) ...
876s Setting up libqt5svg5:arm64 (5.15.12-1) ...
876s Setting up r-cran-mass (7.3-60.0.1-1) ...
876s Setting up r-cran-gtools (3.9.5-1) ...
876s Setting up r-cran-bitops (1.0-7-1) ...
876s Setting up libopenmpi3t64:arm64 (4.1.6-5.1ubuntu3) ...
876s Setting up r-cran-kernsmooth (2.23-22-1) ...
876s Setting up r-cran-catools (1.18.2-1) ...
876s Setting up r-cran-gdata (3.0.0-1) ...
876s Setting up openmpi-bin (4.1.6-5.1ubuntu3) ...
876s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
876s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
876s Setting up libopenmpi-dev:arm64 (4.1.6-5.1ubuntu3) ...
876s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode
876s Setting up r-cran-gplots (3.1.3.1-1) ...
876s Setting up r-cran-rocr (1.0-11-2build1) ...
876s Setting up adwaita-icon-theme (46~rc-1) ...
876s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
876s Setting up libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ...
876s Setting up libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ...
876s Setting up libheif1:arm64 (1.17.6-1ubuntu1) ...
876s Setting up libmagickcore-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ...
876s Setting up humanity-icon-theme (0.6.16) ...
876s Setting up libmagickwand-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ...
876s Setting up ubuntu-mono (24.04-0ubuntu1) ...
876s Setting up imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ...
876s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode
876s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode
876s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode
876s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode
876s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode
876s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode
876s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode
876s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode
876s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode
876s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode
876s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode
876s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode
876s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode
876s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode
876s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode
876s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode
876s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode
876s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode
876s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode
876s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode
876s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode
876s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode
876s Setting up imagemagick (8:6.9.12.98+dfsg1-5) ...
876s Processing triggers for install-info (7.1-3) ...
877s Processing triggers for libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
877s Setting up libgtk-3-0:arm64 (3.24.40-2ubuntu1) ...
882s Processing triggers for libc-bin (2.39-0ubuntu2) ...
882s Processing triggers for man-db (2.12.0-3) ...
884s Processing triggers for udev (255.2-3ubuntu2) ...
884s Setting up libwxgtk3.2-1:arm64 (3.2.4+dfsg-3) ...
884s Setting up gnuplot-qt (5.4.4+dfsg1-2build1) ...
884s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode
884s Setting up murasaki-common (1.68.6-13build4) ...
884s Setting up gnuplot (5.4.4+dfsg1-2build1) ...
884s Setting up murasaki (1.68.6-13build4) ...
884s Setting up murasaki-mpi (1.68.6-13build4) ...
884s Setting up autopkgtest-satdep (0) ...
884s Processing triggers for libc-bin (2.39-0ubuntu2) ...
900s (Reading database ... 116964 files and directories currently installed.)
900s Removing autopkgtest-satdep (0) ...
901s autopkgtest [22:51:37]: test run-unit-test: [-----------------------
902s Test Murasaki on NZ_GG705055.fna
902s Created output directory: /tmp/autopkgtest.32UgmF/autopkgtest_tmp/output
902s Verbosity level is: 0
902s Writing to: output/test
902s Pattern is: 101
902s Max usable hash bits: 27
902s Hit filter is: 0
902s Hash table type is: EcoHash
902s Hashing every: 1 base
902s Histogram detail is: 0
902s Hashing function is: 3
902s Collision profiling is: disabled
902s Repeats are: unmasked
902s Mergefilter is at: 100
902s Random seed: 1710370298 (automatic)
902s Bitscore output: on
902s Leave status records: no
902s Join neighbors is: off
902s Target memory is: 3.43 GB
902s Retain members is: true
902s Store repeatmap? yes
902s Reverse complement data is generated on the fly
902s Rifts allowed: 0
902s Fuzzy Extension: yes
902s Score by minimum pair: yes
902s Gapped anchors: no
902s Large sequence support is: enabled => seqpos is 8 bytes
902s Murasaki version 1.68.6 (LARGESEQ)
902s Loading NZ_GG705055.fna
902s Read 398859bp (389.51 KBp) in 0.030 seconds (12.8 MBp/s)
902s Done with forward strand (410644bp). Preparing reverse complement...
902s  <-> Reversing metdata.
902s Done.
902s Seq NZ_GG705055.fna loaded. 401.02 KB
902s Loading NZ_GG705055.gbk
902s Read 398859bp (389.51 KBp) in 0.021 seconds (18.4 MBp/s)
902s Done with forward strand (410644bp). Preparing reverse complement...
902s  <-> Reversing metdata.
902s Done.
902s Seq NZ_GG705055.gbk loaded. 401.02 KB
902s Sequence loading took: 0.053 seconds
902s Forward frequencies:  A:28.0367%  C:23.1004%  G:20.9036%  T:27.9593%
902s Global base frequencies:  A/T:55.996%  C/G:44.004%
902s Pat: 3 bases long with weight 2
902s    1 101 
902s Computing hash parameters...
902s Using 4 hashbits
902s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 10%......... (T -0.081 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 20%......... (T -0.071 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 91%........
902s Acceptable hash function found after 1000 cycles.
902s Best uses 2/2 bases and has 0 empties from 2 inputs.
902s Score: 0.96875 (cf. worst: -4.51562)
902s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
902s Total correlation penalty: 0
902s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
902s                                             10
902s                                             ==
902s w[ 0]>>29:                                 -.C
902s w[ 0]>>30:                                  A.-
902s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
902s Ecolist (optimistic): Expcted entries per list: 17
902s Ecolist (optimistic): Minimum chunks per list: 2
902s Would take minimum 256.000000 bytes to make perfect hash.
902s Hashing 1.52 MB of sequence requires: 
902s  ~ linear (in seq length) hashing cost of 4.18 MB
902s  ~ linear (in seq length) expected anchor cost of 37.60 MB
902s Initial hash table uses: 256 bytes (4 bits, 16 entries)
902s Expected memory usage (without anchors): 4.18 MB
902s Expected memory usage (with anchors): 41.78 MB
902s Hash parameters computed in 0.101 seconds
902s Creating storage structures: 16 entries in 256 bytes space.
902s Storage structures created in: 0.000 seconds
902s 
902s Hashing NZ_GG705055.fna forwards
902s  0%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 10%......... (T -0.045 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 20%......... (T -0.055 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 30%......... (T -0.052 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 40%......... (T -0.047 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 60%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 70%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 90%.........
902s Hashing NZ_GG705055.fna backwards
902s  0%......... (T -0.098 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 20%......... (T -0.068 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 30%......... (T -0.056 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 40%......... (T -0.045 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 50%......... (T -0.034 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 60%......... (T -0.025 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 70%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 80%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 90%.........
902s Hashing NZ_GG705055.gbk forwards
902s  0%......... (T -0.085 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 10%......... (T -0.074 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 20%......... (T -0.066 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 30%......... (T -0.055 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 40%......... (T -0.045 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 50%......... (T -0.038 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 60%......... (T -0.029 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 70%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 90%.........
902s Hashing NZ_GG705055.gbk backwards
902s  0%......... (T -0.068 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 10%......... (T -0.063 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 20%......... (T -0.058 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 30%......... (T -0.051 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 40%......... (T -0.043 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 50%......... (T -0.033 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 60%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 70%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 80%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:38 2024
902s 90%.........
902s Initial hashing took: 0.346 seconds
902s Extracting anchors from hash-space.
902s  (T -1.412 seconds) ETA: Wed Mar 13 22:51:40 2024
903s  6%. (T -1.120 seconds) ETA: Wed Mar 13 22:51:40 2024
903s 18%. (T -1.036 seconds) ETA: Wed Mar 13 22:51:40 2024
903s 31%. (T -0.884 seconds) ETA: Wed Mar 13 22:51:40 2024
903s 43%. (T -0.720 seconds) ETA: Wed Mar 13 22:51:40 2024
903s 56%. (T -0.523 seconds) ETA: Wed Mar 13 22:51:40 2024
904s 68%. (T -0.319 seconds) ETA: Wed Mar 13 22:51:40 2024
904s 81%. (T -0.114 seconds) ETA: Wed Mar 13 22:51:40 2024
904s 93%.
904s Anchor extraction completed in: 1.618 seconds
904s Total anchors: 0
904s Anchor extraction + merge time: 1.618 seconds
904s Total processing time: 2.119 seconds
904s Writing anchors...
904s Total seeds used in anchors: 16
904s Hash performance:
904s  Keys used: 16 out of 16 possible (100.00%).
904s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
904s  Average pigeons per pigeon hole: 1
904s Writing 16 repeats...Output writing finished in: 0.223 seconds
904s Total time: 2.342 seconds
904s Murasaki finished!
904s PASSED MURASAKI
904s 
904s Testing Genepare on NZ_GG705055.fna
904s 1001
904s PASSED GENEPARSE
904s 
904s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
904s Testing mbfa on NZ_GG705055.fna
905s PASSED mbfa
905s 
905s Test Murasaki on NZ_GG705056.fna
905s Verbosity level is: 0
905s Writing to: output/test
905s Pattern is: 101
905s Max usable hash bits: 27
905s Hit filter is: 0
905s Hash table type is: EcoHash
905s Hashing every: 1 base
905s Histogram detail is: 0
905s Hashing function is: 3
905s Collision profiling is: disabled
905s Repeats are: unmasked
905s Mergefilter is at: 100
905s Random seed: 1710370300 (automatic)
905s Bitscore output: on
905s Leave status records: no
905s Join neighbors is: off
905s Target memory is: 3.43 GB
905s Retain members is: true
905s Store repeatmap? yes
905s Reverse complement data is generated on the fly
905s Rifts allowed: 0
905s Fuzzy Extension: yes
905s Score by minimum pair: yes
905s Gapped anchors: no
905s Large sequence support is: enabled => seqpos is 8 bytes
905s Murasaki version 1.68.6 (LARGESEQ)
905s Loading NZ_GG705056.fna
905s Read 395160bp (385.90 KBp) in 0.016 seconds (23.5 MBp/s)
905s Done with forward strand (409732bp). Preparing reverse complement...
905s  <-> Reversing metdata.
905s Done.
905s Seq NZ_GG705056.fna loaded. 400.13 KB
905s Loading NZ_GG705056.gbk
905s Read 395160bp (385.90 KBp) in 0.021 seconds (18.0 MBp/s)
905s Done with forward strand (409732bp). Preparing reverse complement...
905s  <-> Reversing metdata.
905s Done.
905s Seq NZ_GG705056.gbk loaded. 400.13 KB
905s Sequence loading took: 0.037 seconds
905s Forward frequencies:  A:28.3574%  C:22.4405%  G:20.4591%  T:28.743%
905s Global base frequencies:  A/T:57.1004%  C/G:42.8996%
905s Pat: 3 bases long with weight 2
905s    1 101 
905s Computing hash parameters...
905s Using 4 hashbits
905s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 91%........
905s Acceptable hash function found after 1000 cycles.
905s Best uses 2/2 bases and has 0 empties from 2 inputs.
905s Score: 0.96875 (cf. worst: -4.51562)
905s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
905s Total correlation penalty: 0
905s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
905s                                             10
905s                                             ==
905s w[ 0]>>29:                                 -.C
905s w[ 0]>>30:                                  A.-
905s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
905s Ecolist (optimistic): Expcted entries per list: 17
905s Ecolist (optimistic): Minimum chunks per list: 2
905s Would take minimum 256.000000 bytes to make perfect hash.
905s Hashing 1.51 MB of sequence requires: 
905s  ~ linear (in seq length) hashing cost of 4.15 MB
905s  ~ linear (in seq length) expected anchor cost of 37.51 MB
905s Initial hash table uses: 256 bytes (4 bits, 16 entries)
905s Expected memory usage (without anchors): 4.15 MB
905s Expected memory usage (with anchors): 41.66 MB
905s Hash parameters computed in 0.103 seconds
905s Creating storage structures: 16 entries in 256 bytes space.
905s Storage structures created in: 0.000 seconds
905s 
905s Hashing NZ_GG705056.fna forwards
905s  0%......... (T -0.023 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 10%......... (T -0.026 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 20%......... (T -0.027 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 30%......... (T -0.025 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 40%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 50%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 60%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 70%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 80%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 90%.........
905s Hashing NZ_GG705056.fna backwards
905s  0%......... (T -0.048 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 10%......... (T -0.043 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 20%......... (T -0.035 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 30%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 40%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 50%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 60%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 70%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 90%.........
905s Hashing NZ_GG705056.gbk forwards
905s  0%......... (T -0.038 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 10%......... (T -0.037 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 20%......... (T -0.033 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 30%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 40%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 50%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 60%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 70%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 90%.........
905s Hashing NZ_GG705056.gbk backwards
905s  0%......... (T -0.033 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 10%......... (T -0.029 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 20%......... (T -0.026 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 30%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 40%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 50%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 60%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 70%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:41 2024
905s 90%.........
905s Initial hashing took: 0.170 seconds
905s Extracting anchors from hash-space.
905s  (T -0.811 seconds) ETA: Wed Mar 13 22:51:42 2024
905s  6%. (T -1.041 seconds) ETA: Wed Mar 13 22:51:42 2024
905s 18%. (T -0.954 seconds) ETA: Wed Mar 13 22:51:42 2024
906s 31%. (T -0.922 seconds) ETA: Wed Mar 13 22:51:42 2024
906s 43%. (T -0.700 seconds) ETA: Wed Mar 13 22:51:42 2024
906s 56%. (T -0.546 seconds) ETA: Wed Mar 13 22:51:43 2024
906s 68%. (T -0.313 seconds) ETA: Wed Mar 13 22:51:42 2024
906s 81%. (T -0.117 seconds) ETA: Wed Mar 13 22:51:42 2024
906s 93%.
906s Anchor extraction completed in: 1.613 seconds
906s Total anchors: 0
906s Anchor extraction + merge time: 1.613 seconds
906s Total processing time: 1.923 seconds
906s Writing anchors...
906s Total seeds used in anchors: 16
906s Hash performance:
906s  Keys used: 16 out of 16 possible (100.00%).
906s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
906s  Average pigeons per pigeon hole: 1
907s Writing 16 repeats...Output writing finished in: 0.204 seconds
907s Total time: 2.127 seconds
907s Murasaki finished!
907s PASSED MURASAKI
907s 
907s Testing Genepare on NZ_GG705056.fna
907s 1001
907s PASSED GENEPARSE
907s 
907s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
907s Testing mbfa on NZ_GG705056.fna
907s PASSED mbfa
907s 
907s Test Murasaki on NZ_GG705057.fna
907s Verbosity level is: 0
907s Writing to: output/test
907s Pattern is: 101
907s Max usable hash bits: 27
907s Hit filter is: 0
907s Hash table type is: EcoHash
907s Hashing every: 1 base
907s Histogram detail is: 0
907s Hashing function is: 3
907s Collision profiling is: disabled
907s Repeats are: unmasked
907s Mergefilter is at: 100
907s Random seed: 1710370303 (automatic)
907s Bitscore output: on
907s Leave status records: no
907s Join neighbors is: off
907s Target memory is: 3.43 GB
907s Retain members is: true
907s Store repeatmap? yes
907s Reverse complement data is generated on the fly
907s Rifts allowed: 0
907s Fuzzy Extension: yes
907s Score by minimum pair: yes
907s Gapped anchors: no
907s Large sequence support is: enabled => seqpos is 8 bytes
907s Murasaki version 1.68.6 (LARGESEQ)
907s Loading NZ_GG705057.fna
907s Read 295987bp (289.05 KBp) in 0.013 seconds (22.4 MBp/s)
907s Done with forward strand (304045bp). Preparing reverse complement...
907s  <-> Reversing metdata.
907s Done.
907s Seq NZ_GG705057.fna loaded. 296.92 KB
907s Loading NZ_GG705057.gbk
907s Read 295987bp (289.05 KBp) in 0.017 seconds (16.8 MBp/s)
907s Done with forward strand (304045bp). Preparing reverse complement...
907s  <-> Reversing metdata.
907s Done.
907s Seq NZ_GG705057.gbk loaded. 296.92 KB
907s Sequence loading took: 0.030 seconds
907s Forward frequencies:  A:28.7229%  C:20.2448%  G:22.7206%  T:28.3117%
907s Global base frequencies:  A/T:57.0346%  C/G:42.9654%
907s Pat: 3 bases long with weight 2
907s    1 101 
907s Computing hash parameters...
907s Using 4 hashbits
907s  0%......... (T -0.102 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 10%......... (T -0.087 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 20%......... (T -0.075 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 30%......... (T -0.064 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 40%......... (T -0.053 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 60%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 91%........
907s Acceptable hash function found after 1000 cycles.
907s Best uses 2/2 bases and has 0 empties from 2 inputs.
907s Score: 0.96875 (cf. worst: -4.51562)
907s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
907s Total correlation penalty: 0
907s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
907s                                             10
907s                                             ==
907s w[ 0]>>29:                                 -.C
907s w[ 0]>>30:                                  A.-
907s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
907s Ecolist (optimistic): Expcted entries per list: 17
907s Ecolist (optimistic): Minimum chunks per list: 2
907s Would take minimum 256.000000 bytes to make perfect hash.
907s Hashing 1.13 MB of sequence requires: 
907s  ~ linear (in seq length) hashing cost of 3.11 MB
907s  ~ linear (in seq length) expected anchor cost of 27.84 MB
907s Initial hash table uses: 256 bytes (4 bits, 16 entries)
907s Expected memory usage (without anchors): 3.11 MB
907s Expected memory usage (with anchors): 30.94 MB
907s Hash parameters computed in 0.107 seconds
907s Creating storage structures: 16 entries in 256 bytes space.
907s Storage structures created in: 0.000 seconds
907s 
907s Hashing NZ_GG705057.fna forwards
907s  0%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 10%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 20%......... (T -0.029 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 30%......... (T -0.029 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 40%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 50%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 60%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 70%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 80%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 90%.........
907s Hashing NZ_GG705057.fna backwards
907s  0%......... (T -0.030 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 10%......... (T -0.027 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 20%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 30%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 40%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 50%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 60%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 70%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 90%.........
907s Hashing NZ_GG705057.gbk forwards
907s  0%......... (T -0.034 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 10%......... (T -0.029 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 20%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 30%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 40%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 50%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 60%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 70%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 80%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 90%.........
907s Hashing NZ_GG705057.gbk backwards
907s  0%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 10%......... (T -0.025 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 20%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 30%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 40%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 50%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 60%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 70%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 80%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:43 2024
907s 90%.........
907s Initial hashing took: 0.148 seconds
907s Extracting anchors from hash-space.
907s  (T -1.766 seconds) ETA: Wed Mar 13 22:51:45 2024
907s  6%. (T -1.199 seconds) ETA: Wed Mar 13 22:51:44 2024
908s 18%. (T -0.982 seconds) ETA: Wed Mar 13 22:51:44 2024
908s 31%. (T -0.712 seconds) ETA: Wed Mar 13 22:51:44 2024
908s 43%. (T -0.546 seconds) ETA: Wed Mar 13 22:51:44 2024
908s 56%. (T -0.386 seconds) ETA: Wed Mar 13 22:51:44 2024
908s 68%. (T -0.233 seconds) ETA: Wed Mar 13 22:51:44 2024
908s 81%. (T -0.086 seconds) ETA: Wed Mar 13 22:51:44 2024
908s 93%.
908s Anchor extraction completed in: 1.251 seconds
908s Total anchors: 0
908s Anchor extraction + merge time: 1.251 seconds
908s Total processing time: 1.536 seconds
908s Writing anchors...
908s Total seeds used in anchors: 16
908s Hash performance:
908s  Keys used: 16 out of 16 possible (100.00%).
908s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
908s  Average pigeons per pigeon hole: 1
908s Writing 16 repeats...Output writing finished in: 0.161 seconds
908s Total time: 1.697 seconds
908s Murasaki finished!
908s PASSED MURASAKI
908s 
908s Testing Genepare on NZ_GG705057.fna
909s 1001
909s PASSED GENEPARSE
909s 
909s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
909s Testing mbfa on NZ_GG705057.fna
909s PASSED mbfa
909s 
909s Test Murasaki on NZ_GG705058.fna
909s Verbosity level is: 0
909s Writing to: output/test
909s Pattern is: 101
909s Max usable hash bits: 27
909s Hit filter is: 0
909s Hash table type is: EcoHash
909s Hashing every: 1 base
909s Histogram detail is: 0
909s Hashing function is: 3
909s Collision profiling is: disabled
909s Repeats are: unmasked
909s Mergefilter is at: 100
909s Random seed: 1710370305 (automatic)
909s Bitscore output: on
909s Leave status records: no
909s Join neighbors is: off
909s Target memory is: 3.43 GB
909s Retain members is: true
909s Store repeatmap? yes
909s Reverse complement data is generated on the fly
909s Rifts allowed: 0
909s Fuzzy Extension: yes
909s Score by minimum pair: yes
909s Gapped anchors: no
909s Large sequence support is: enabled => seqpos is 8 bytes
909s Murasaki version 1.68.6 (LARGESEQ)
909s Loading NZ_GG705058.fna
909s Read 261113bp (254.99 KBp) in 0.012 seconds (21.3 MBp/s)
909s Done with forward strand (268087bp). Preparing reverse complement...
909s  <-> Reversing metdata.
909s Done.
909s Seq NZ_GG705058.fna loaded. 261.80 KB
909s Loading NZ_GG705058.gbk
909s Read 261113bp (254.99 KBp) in 0.014 seconds (17.3 MBp/s)
909s Done with forward strand (268087bp). Preparing reverse complement...
909s  <-> Reversing metdata.
909s Done.
909s Seq NZ_GG705058.gbk loaded. 261.80 KB
909s Sequence loading took: 0.027 seconds
909s Forward frequencies:  A:29.3149%  C:19.6057%  G:21.8568%  T:29.2226%
909s Global base frequencies:  A/T:58.5375%  C/G:41.4625%
909s Pat: 3 bases long with weight 2
909s    1 101 
909s Computing hash parameters...
909s Using 4 hashbits
909s  0%......... (T -0.098 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 10%......... (T -0.087 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 20%......... (T -0.075 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 30%......... (T -0.064 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 40%......... (T -0.053 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 50%......... (T -0.043 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 60%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 80%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 91%........
909s Acceptable hash function found after 1000 cycles.
909s Best uses 2/2 bases and has 0 empties from 2 inputs.
909s Score: 0.96875 (cf. worst: -4.51562)
909s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
909s Total correlation penalty: 0
909s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
909s                                             10
909s                                             ==
909s w[ 0]>>29:                                 -.C
909s w[ 0]>>30:                                  A.-
909s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
909s Ecolist (optimistic): Expcted entries per list: 16
909s Ecolist (optimistic): Minimum chunks per list: 2
909s Would take minimum 256.000000 bytes to make perfect hash.
909s Hashing 1019.97 KB of sequence requires: 
909s  ~ linear (in seq length) hashing cost of 2.74 MB
909s  ~ linear (in seq length) expected anchor cost of 24.54 MB
909s Initial hash table uses: 256 bytes (4 bits, 16 entries)
909s Expected memory usage (without anchors): 2.74 MB
909s Expected memory usage (with anchors): 27.28 MB
909s Hash parameters computed in 0.107 seconds
909s Creating storage structures: 16 entries in 256 bytes space.
909s Storage structures created in: 0.000 seconds
909s 
909s Hashing NZ_GG705058.fna forwards
909s  0%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 10%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 20%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 30%......... (T -0.025 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 40%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 50%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 60%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 70%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 80%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 90%.........
909s Hashing NZ_GG705058.fna backwards
909s  0%......... (T -0.044 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 10%......... (T -0.062 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 20%......... (T -0.053 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 30%......... (T -0.043 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 40%......... (T -0.034 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 50%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 60%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 70%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 80%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 90%.........
909s Hashing NZ_GG705058.gbk forwards
909s  0%......... (T -0.068 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 10%......... (T -0.052 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 20%......... (T -0.040 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 30%......... (T -0.035 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 40%......... (T -0.030 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 50%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 60%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 70%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 80%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 90%.........
909s Hashing NZ_GG705058.gbk backwards
909s  0%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 10%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 20%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 30%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 40%......... (T -0.025 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 50%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 60%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 70%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 80%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:45 2024
909s 90%.........
909s Initial hashing took: 0.221 seconds
909s Extracting anchors from hash-space.
909s  (T -0.984 seconds) ETA: Wed Mar 13 22:51:46 2024
909s  6%. (T -1.190 seconds) ETA: Wed Mar 13 22:51:47 2024
909s 18%. (T -0.803 seconds) ETA: Wed Mar 13 22:51:46 2024
910s 31%. (T -0.699 seconds) ETA: Wed Mar 13 22:51:46 2024
910s 43%. (T -0.498 seconds) ETA: Wed Mar 13 22:51:46 2024
910s 56%. (T -0.357 seconds) ETA: Wed Mar 13 22:51:46 2024
910s 68%. (T -0.201 seconds) ETA: Wed Mar 13 22:51:46 2024
910s 81%. (T -0.079 seconds) ETA: Wed Mar 13 22:51:46 2024
910s 93%.
910s Anchor extraction completed in: 1.124 seconds
910s Total anchors: 0
910s Anchor extraction + merge time: 1.124 seconds
910s Total processing time: 1.480 seconds
910s Writing anchors...
910s Total seeds used in anchors: 16
910s Hash performance:
910s  Keys used: 16 out of 16 possible (100.00%).
910s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
910s  Average pigeons per pigeon hole: 1
910s Writing 16 repeats...Output writing finished in: 0.142 seconds
910s Total time: 1.622 seconds
910s Murasaki finished!
910s PASSED MURASAKI
910s 
910s Testing Genepare on NZ_GG705058.fna
910s 1001
910s PASSED GENEPARSE
910s 
910s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
911s Testing mbfa on NZ_GG705058.fna
911s PASSED mbfa
911s 
911s Test Murasaki on NZ_GG705059.fna
911s Verbosity level is: 0
911s Writing to: output/test
911s Pattern is: 101
911s Max usable hash bits: 27
911s Hit filter is: 0
911s Hash table type is: EcoHash
911s Hashing every: 1 base
911s Histogram detail is: 0
911s Hashing function is: 3
911s Collision profiling is: disabled
911s Repeats are: unmasked
911s Mergefilter is at: 100
911s Random seed: 1710370307 (automatic)
911s Bitscore output: on
911s Leave status records: no
911s Join neighbors is: off
911s Target memory is: 3.43 GB
911s Retain members is: true
911s Store repeatmap? yes
911s Reverse complement data is generated on the fly
911s Rifts allowed: 0
911s Fuzzy Extension: yes
911s Score by minimum pair: yes
911s Gapped anchors: no
911s Large sequence support is: enabled => seqpos is 8 bytes
911s Murasaki version 1.68.6 (LARGESEQ)
911s Loading NZ_GG705059.fna
911s Read 254292bp (248.33 KBp) in 0.012 seconds (19.9 MBp/s)
911s Done with forward strand (263842bp). Preparing reverse complement...
911s  <-> Reversing metdata.
911s Done.
911s Seq NZ_GG705059.fna loaded. 257.66 KB
911s Loading NZ_GG705059.gbk
911s Read 254292bp (248.33 KBp) in 0.015 seconds (16.5 MBp/s)
911s Done with forward strand (263842bp). Preparing reverse complement...
911s  <-> Reversing metdata.
911s Done.
911s Seq NZ_GG705059.gbk loaded. 257.66 KB
911s Sequence loading took: 0.027 seconds
911s Forward frequencies:  A:28.2899%  C:22.6452%  G:20.7128%  T:28.3521%
911s Global base frequencies:  A/T:56.642%  C/G:43.358%
911s Pat: 3 bases long with weight 2
911s    1 101 
911s Computing hash parameters...
911s Using 4 hashbits
911s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 30%......... (T -0.063 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 40%......... (T -0.053 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 60%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 80%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 91%........
911s Acceptable hash function found after 1000 cycles.
911s Best uses 2/2 bases and has 0 empties from 2 inputs.
911s Score: 0.96875 (cf. worst: -4.51562)
911s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
911s Total correlation penalty: 0
911s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
911s                                             10
911s                                             ==
911s w[ 0]>>29:                                 -.C
911s w[ 0]>>30:                                  A.-
911s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
911s Ecolist (optimistic): Expcted entries per list: 16
911s Ecolist (optimistic): Minimum chunks per list: 2
911s Would take minimum 256.000000 bytes to make perfect hash.
911s Hashing 993.33 KB of sequence requires: 
911s  ~ linear (in seq length) hashing cost of 2.67 MB
911s  ~ linear (in seq length) expected anchor cost of 24.16 MB
911s Initial hash table uses: 256 bytes (4 bits, 16 entries)
911s Expected memory usage (without anchors): 2.67 MB
911s Expected memory usage (with anchors): 26.82 MB
911s Hash parameters computed in 0.111 seconds
911s Creating storage structures: 16 entries in 256 bytes space.
911s Storage structures created in: 0.001 seconds
911s 
911s Hashing NZ_GG705059.fna forwards
911s  0%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 10%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 20%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 30%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 40%......... (T -0.023 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 50%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 60%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 70%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 80%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 90%.........
911s Hashing NZ_GG705059.fna backwards
911s  0%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 10%......... (T -0.034 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 20%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 30%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 40%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 50%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 60%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 70%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 90%.........
911s Hashing NZ_GG705059.gbk forwards
911s  0%......... (T -0.036 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 10%......... (T -0.029 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 20%......... (T -0.027 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 30%......... (T -0.023 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 40%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 50%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 60%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 70%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 90%.........
911s Hashing NZ_GG705059.gbk backwards
911s  0%......... (T -0.040 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 10%......... (T -0.034 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 20%......... (T -0.030 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 30%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 40%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 50%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 60%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 70%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:47 2024
911s 90%.........
911s Initial hashing took: 0.167 seconds
911s Extracting anchors from hash-space.
911s  (T -1.119 seconds) ETA: Wed Mar 13 22:51:48 2024
911s  6%. (T -0.747 seconds) ETA: Wed Mar 13 22:51:48 2024
911s 18%. (T -0.738 seconds) ETA: Wed Mar 13 22:51:48 2024
911s 31%. (T -0.601 seconds) ETA: Wed Mar 13 22:51:48 2024
911s 43%. (T -0.493 seconds) ETA: Wed Mar 13 22:51:48 2024
912s 56%. (T -0.356 seconds) ETA: Wed Mar 13 22:51:48 2024
912s 68%. (T -0.211 seconds) ETA: Wed Mar 13 22:51:48 2024
912s 81%. (T -0.075 seconds) ETA: Wed Mar 13 22:51:48 2024
912s 93%.
912s Anchor extraction completed in: 1.056 seconds
912s Total anchors: 0
912s Anchor extraction + merge time: 1.056 seconds
912s Total processing time: 1.362 seconds
912s Writing anchors...
912s Total seeds used in anchors: 16
912s Hash performance:
912s  Keys used: 16 out of 16 possible (100.00%).
912s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
912s  Average pigeons per pigeon hole: 1
912s Writing 16 repeats...Output writing finished in: 0.138 seconds
912s Total time: 1.500 seconds
912s Murasaki finished!
912s PASSED MURASAKI
912s 
912s Testing Genepare on NZ_GG705059.fna
912s 1001
912s PASSED GENEPARSE
912s 
912s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
912s Testing mbfa on NZ_GG705059.fna
912s PASSED mbfa
912s 
912s Test Murasaki on NZ_GG705060.fna
912s Verbosity level is: 0
912s Writing to: output/test
912s Pattern is: 101
912s Max usable hash bits: 27
912s Hit filter is: 0
912s Hash table type is: EcoHash
912s Hashing every: 1 base
912s Histogram detail is: 0
912s Hashing function is: 3
912s Collision profiling is: disabled
912s Repeats are: unmasked
912s Mergefilter is at: 100
912s Random seed: 1710370308 (automatic)
912s Bitscore output: on
912s Leave status records: no
912s Join neighbors is: off
912s Target memory is: 3.43 GB
912s Retain members is: true
912s Store repeatmap? yes
912s Reverse complement data is generated on the fly
912s Rifts allowed: 0
912s Fuzzy Extension: yes
912s Score by minimum pair: yes
912s Gapped anchors: no
912s Large sequence support is: enabled => seqpos is 8 bytes
912s Murasaki version 1.68.6 (LARGESEQ)
912s Loading NZ_GG705060.fna
912s Read 250160bp (244.30 KBp) in 0.011 seconds (21.8 MBp/s)
912s Done with forward strand (261824bp). Preparing reverse complement...
912s  <-> Reversing metdata.
912s Done.
912s Seq NZ_GG705060.fna loaded. 255.69 KB
912s Loading NZ_GG705060.gbk
912s Read 250160bp (244.30 KBp) in 0.014 seconds (16.6 MBp/s)
912s Done with forward strand (261824bp). Preparing reverse complement...
912s  <-> Reversing metdata.
912s Done.
912s Seq NZ_GG705060.gbk loaded. 255.69 KB
912s Sequence loading took: 0.026 seconds
912s Forward frequencies:  A:28.3151%  C:22.1794%  G:20.8447%  T:28.6609%
912s Global base frequencies:  A/T:56.9759%  C/G:43.0241%
912s Pat: 3 bases long with weight 2
912s    1 101 
912s Computing hash parameters...
912s Using 4 hashbits
912s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:51:49 2024
912s 10%......... (T -0.085 seconds) ETA: Wed Mar 13 22:51:49 2024
912s 20%......... (T -0.074 seconds) ETA: Wed Mar 13 22:51:49 2024
912s 30%......... (T -0.064 seconds) ETA: Wed Mar 13 22:51:49 2024
912s 40%......... (T -0.053 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 60%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 80%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 91%........
913s Acceptable hash function found after 1000 cycles.
913s Best uses 2/2 bases and has 0 empties from 2 inputs.
913s Score: 0.96875 (cf. worst: -4.51562)
913s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
913s Total correlation penalty: 0
913s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
913s                                             10
913s                                             ==
913s w[ 0]>>29:                                 -.C
913s w[ 0]>>30:                                  A.-
913s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
913s Ecolist (optimistic): Expcted entries per list: 16
913s Ecolist (optimistic): Minimum chunks per list: 3
913s Would take minimum 256.000000 bytes to make perfect hash.
913s Hashing 977.19 KB of sequence requires: 
913s  ~ linear (in seq length) hashing cost of 2.50 MB
913s  ~ linear (in seq length) expected anchor cost of 23.97 MB
913s Initial hash table uses: 256 bytes (4 bits, 16 entries)
913s Expected memory usage (without anchors): 2.51 MB
913s Expected memory usage (with anchors): 26.48 MB
913s Hash parameters computed in 0.107 seconds
913s Creating storage structures: 16 entries in 256 bytes space.
913s Storage structures created in: 0.000 seconds
913s 
913s Hashing NZ_GG705060.fna forwards
913s  0%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 10%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 20%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 30%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 40%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 50%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 60%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 70%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 90%.........
913s Hashing NZ_GG705060.fna backwards
913s  0%......... (T -0.050 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 10%......... (T -0.040 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 20%......... (T -0.033 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 30%......... (T -0.033 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 40%......... (T -0.028 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 50%......... (T -0.023 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 60%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 70%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 80%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 90%.........
913s Hashing NZ_GG705060.gbk forwards
913s  0%......... (T -0.035 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 10%......... (T -0.033 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 20%......... (T -0.030 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 30%......... (T -0.025 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 40%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 50%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 60%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 70%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 80%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 90%.........
913s Hashing NZ_GG705060.gbk backwards
913s  0%......... (T -0.047 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 10%......... (T -0.045 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 20%......... (T -0.037 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 30%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 40%......... (T -0.105 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 50%......... (T -0.073 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 60%......... (T -0.049 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 70%......... (T -0.030 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 80%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 90%.........
913s Initial hashing took: 0.270 seconds
913s Extracting anchors from hash-space.
913s  (T -0.509 seconds) ETA: Wed Mar 13 22:51:49 2024
913s  6%. (T -0.510 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 18%. (T -0.383 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 31%. (T -0.370 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 43%. (T -0.276 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 56%. (T -0.215 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 68%. (T -0.120 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 81%. (T -0.044 seconds) ETA: Wed Mar 13 22:51:49 2024
913s 93%.
913s Anchor extraction completed in: 0.618 seconds
913s Total anchors: 0
913s Anchor extraction + merge time: 0.618 seconds
913s Total processing time: 1.021 seconds
913s Writing anchors...
913s Total seeds used in anchors: 16
913s Hash performance:
913s  Keys used: 16 out of 16 possible (100.00%).
913s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
913s  Average pigeons per pigeon hole: 1
914s Writing 16 repeats...Output writing finished in: 0.138 seconds
914s Total time: 1.159 seconds
914s Murasaki finished!
914s PASSED MURASAKI
914s 
914s Testing Genepare on NZ_GG705060.fna
914s 1001
914s PASSED GENEPARSE
914s 
914s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
914s Testing mbfa on NZ_GG705060.fna
914s PASSED mbfa
914s 
914s Test Murasaki on NZ_GG705061.fna
914s Verbosity level is: 0
914s Writing to: output/test
914s Pattern is: 101
914s Max usable hash bits: 27
914s Hit filter is: 0
914s Hash table type is: EcoHash
914s Hashing every: 1 base
914s Histogram detail is: 0
914s Hashing function is: 3
914s Collision profiling is: disabled
914s Repeats are: unmasked
914s Mergefilter is at: 100
914s Random seed: 1710370310 (automatic)
914s Bitscore output: on
914s Leave status records: no
914s Join neighbors is: off
914s Target memory is: 3.43 GB
914s Retain members is: true
914s Store repeatmap? yes
914s Reverse complement data is generated on the fly
914s Rifts allowed: 0
914s Fuzzy Extension: yes
914s Score by minimum pair: yes
914s Gapped anchors: no
914s Large sequence support is: enabled => seqpos is 8 bytes
914s Murasaki version 1.68.6 (LARGESEQ)
914s Loading NZ_GG705061.fna
914s Read 229103bp (223.73 KBp) in 0.011 seconds (19.9 MBp/s)
914s Done with forward strand (233240bp). Preparing reverse complement...
914s  <-> Reversing metdata.
914s Done.
914s Seq NZ_GG705061.fna loaded. 227.77 KB
914s Loading NZ_GG705061.gbk
914s Read 229103bp (223.73 KBp) in 0.013 seconds (17.0 MBp/s)
914s Done with forward strand (233240bp). Preparing reverse complement...
914s  <-> Reversing metdata.
914s Done.
914s Seq NZ_GG705061.gbk loaded. 227.77 KB
914s Sequence loading took: 0.024 seconds
914s Forward frequencies:  A:28.2371%  C:22.8212%  G:21.0028%  T:27.939%
914s Global base frequencies:  A/T:56.176%  C/G:43.824%
914s Pat: 3 bases long with weight 2
914s    1 101 
914s Computing hash parameters...
914s Using 4 hashbits
914s  0%......... (T -0.091 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 91%........
914s Acceptable hash function found after 1000 cycles.
914s Best uses 2/2 bases and has 0 empties from 2 inputs.
914s Score: 0.96875 (cf. worst: -4.51562)
914s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
914s Total correlation penalty: 0
914s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
914s                                             10
914s                                             ==
914s w[ 0]>>29:                                 -.C
914s w[ 0]>>30:                                  A.-
914s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
914s Ecolist (optimistic): Expcted entries per list: 16
914s Ecolist (optimistic): Minimum chunks per list: 3
914s Would take minimum 256.000000 bytes to make perfect hash.
914s Hashing 894.93 KB of sequence requires: 
914s  ~ linear (in seq length) hashing cost of 2.29 MB
914s  ~ linear (in seq length) expected anchor cost of 21.35 MB
914s Initial hash table uses: 256 bytes (4 bits, 16 entries)
914s Expected memory usage (without anchors): 2.29 MB
914s Expected memory usage (with anchors): 23.65 MB
914s Hash parameters computed in 0.103 seconds
914s Creating storage structures: 16 entries in 256 bytes space.
914s Storage structures created in: 0.000 seconds
914s 
914s Hashing NZ_GG705061.fna forwards
914s  0%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 10%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 20%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 30%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 40%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 50%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 60%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 90%.........
914s Hashing NZ_GG705061.fna backwards
914s  0%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 10%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 20%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 30%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 40%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 50%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 60%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 90%.........
914s Hashing NZ_GG705061.gbk forwards
914s  0%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 10%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 20%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 30%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 40%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 50%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 60%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 90%.........
914s Hashing NZ_GG705061.gbk backwards
914s  0%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 10%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 20%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 30%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 40%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 50%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 60%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:50 2024
914s 90%.........
914s Initial hashing took: 0.085 seconds
914s Extracting anchors from hash-space.
914s  (T -1.331 seconds) ETA: Wed Mar 13 22:51:51 2024
914s  6%. (T -0.887 seconds) ETA: Wed Mar 13 22:51:51 2024
914s 18%. (T -0.743 seconds) ETA: Wed Mar 13 22:51:51 2024
914s 31%. (T -0.549 seconds) ETA: Wed Mar 13 22:51:51 2024
914s 43%. (T -0.408 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 56%. (T -0.285 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 68%. (T -0.171 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 81%. (T -0.063 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 93%.
915s Anchor extraction completed in: 0.915 seconds
915s Total anchors: 0
915s Anchor extraction + merge time: 0.915 seconds
915s Total processing time: 1.128 seconds
915s Writing anchors...
915s Total seeds used in anchors: 16
915s Hash performance:
915s  Keys used: 16 out of 16 possible (100.00%).
915s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
915s  Average pigeons per pigeon hole: 1
915s Writing 16 repeats...Output writing finished in: 0.132 seconds
915s Total time: 1.260 seconds
915s Murasaki finished!
915s PASSED MURASAKI
915s 
915s Testing Genepare on NZ_GG705061.fna
915s 1001
915s PASSED GENEPARSE
915s 
915s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
915s Testing mbfa on NZ_GG705061.fna
915s PASSED mbfa
915s 
915s Test Murasaki on NZ_GG705062.fna
915s Verbosity level is: 0
915s Writing to: output/test
915s Pattern is: 101
915s Max usable hash bits: 27
915s Hit filter is: 0
915s Hash table type is: EcoHash
915s Hashing every: 1 base
915s Histogram detail is: 0
915s Hashing function is: 3
915s Collision profiling is: disabled
915s Repeats are: unmasked
915s Mergefilter is at: 100
915s Random seed: 1710370311 (automatic)
915s Bitscore output: on
915s Leave status records: no
915s Join neighbors is: off
915s Target memory is: 3.43 GB
915s Retain members is: true
915s Store repeatmap? yes
915s Reverse complement data is generated on the fly
915s Rifts allowed: 0
915s Fuzzy Extension: yes
915s Score by minimum pair: yes
915s Gapped anchors: no
915s Large sequence support is: enabled => seqpos is 8 bytes
915s Murasaki version 1.68.6 (LARGESEQ)
915s Loading NZ_GG705062.fna
915s Read 174324bp (170.24 KBp) in 0.008 seconds (21.0 MBp/s)
915s Done with forward strand (181688bp). Preparing reverse complement...
915s  <-> Reversing metdata.
915s Done.
915s Seq NZ_GG705062.fna loaded. 177.43 KB
915s Loading NZ_GG705062.gbk
915s Read 174324bp (170.24 KBp) in 0.010 seconds (16.3 MBp/s)
915s Done with forward strand (181688bp). Preparing reverse complement...
915s  <-> Reversing metdata.
915s Done.
915s Seq NZ_GG705062.gbk loaded. 177.43 KB
915s Sequence loading took: 0.018 seconds
915s Forward frequencies:  A:28.8004%  C:19.6749%  G:21.6212%  T:29.9035%
915s Global base frequencies:  A/T:58.7039%  C/G:41.2961%
915s Pat: 3 bases long with weight 2
915s    1 101 
915s Computing hash parameters...
915s Using 4 hashbits
915s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 91%........
915s Acceptable hash function found after 1000 cycles.
915s Best uses 2/2 bases and has 0 empties from 2 inputs.
915s Score: 0.96875 (cf. worst: -4.51562)
915s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
915s Total correlation penalty: 0
915s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
915s                                             10
915s                                             ==
915s w[ 0]>>29:                                 -.C
915s w[ 0]>>30:                                  A.-
915s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
915s Ecolist (optimistic): Expcted entries per list: 16
915s Ecolist (optimistic): Minimum chunks per list: 3
915s Would take minimum 256.000000 bytes to make perfect hash.
915s Hashing 680.95 KB of sequence requires: 
915s  ~ linear (in seq length) hashing cost of 1.75 MB
915s  ~ linear (in seq length) expected anchor cost of 16.63 MB
915s Initial hash table uses: 256 bytes (4 bits, 16 entries)
915s Expected memory usage (without anchors): 1.75 MB
915s Expected memory usage (with anchors): 18.38 MB
915s Hash parameters computed in 0.103 seconds
915s Creating storage structures: 16 entries in 256 bytes space.
915s Storage structures created in: 0.000 seconds
915s 
915s Hashing NZ_GG705062.fna forwards
915s  0%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 10%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 20%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 30%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 40%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 50%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 60%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 70%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 90%.........
915s Hashing NZ_GG705062.fna backwards
915s  0%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 10%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 20%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 30%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 40%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 50%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 60%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 70%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 90%.........
915s Hashing NZ_GG705062.gbk forwards
915s  0%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 10%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 20%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 30%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 40%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 50%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 60%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 70%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 90%.........
915s Hashing NZ_GG705062.gbk backwards
915s  0%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 10%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 20%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 30%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 40%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 50%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 60%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 70%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:51 2024
915s 90%.........
915s Initial hashing took: 0.063 seconds
915s Extracting anchors from hash-space.
915s  (T -1.546 seconds) ETA: Wed Mar 13 22:51:53 2024
915s  6%. (T -0.811 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 18%. (T -0.634 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 31%. (T -0.446 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 43%. (T -0.327 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 56%. (T -0.227 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 68%. (T -0.138 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 81%. (T -0.051 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 93%.
916s Anchor extraction completed in: 0.735 seconds
916s Total anchors: 0
916s Anchor extraction + merge time: 0.735 seconds
916s Total processing time: 0.920 seconds
916s Writing anchors...
916s Total seeds used in anchors: 16
916s Hash performance:
916s  Keys used: 16 out of 16 possible (100.00%).
916s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
916s  Average pigeons per pigeon hole: 1
916s Writing 16 repeats...Output writing finished in: 0.095 seconds
916s Total time: 1.015 seconds
916s Murasaki finished!
916s PASSED MURASAKI
916s 
916s Testing Genepare on NZ_GG705062.fna
916s 1001
916s PASSED GENEPARSE
916s 
916s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
916s Testing mbfa on NZ_GG705062.fna
916s PASSED mbfa
916s 
916s Test Murasaki on NZ_GG705063.fna
916s Verbosity level is: 0
916s Writing to: output/test
916s Pattern is: 101
916s Max usable hash bits: 27
916s Hit filter is: 0
916s Hash table type is: EcoHash
916s Hashing every: 1 base
916s Histogram detail is: 0
916s Hashing function is: 3
916s Collision profiling is: disabled
916s Repeats are: unmasked
916s Mergefilter is at: 100
916s Random seed: 1710370312 (automatic)
916s Bitscore output: on
916s Leave status records: no
916s Join neighbors is: off
916s Target memory is: 3.43 GB
916s Retain members is: true
916s Store repeatmap? yes
916s Reverse complement data is generated on the fly
916s Rifts allowed: 0
916s Fuzzy Extension: yes
916s Score by minimum pair: yes
916s Gapped anchors: no
916s Large sequence support is: enabled => seqpos is 8 bytes
916s Murasaki version 1.68.6 (LARGESEQ)
916s Loading NZ_GG705063.fna
916s Read 169631bp (165.66 KBp) in 0.008 seconds (20.4 MBp/s)
916s Done with forward strand (171684bp). Preparing reverse complement...
916s  <-> Reversing metdata.
916s Done.
916s Seq NZ_GG705063.fna loaded. 167.66 KB
916s Loading NZ_GG705063.gbk
916s Read 169631bp (165.66 KBp) in 0.010 seconds (16.6 MBp/s)
916s Done with forward strand (171684bp). Preparing reverse complement...
916s  <-> Reversing metdata.
916s Done.
916s Seq NZ_GG705063.gbk loaded. 167.66 KB
916s Sequence loading took: 0.019 seconds
916s Forward frequencies:  A:27.9294%  C:20.6572%  G:23.2847%  T:28.1287%
916s Global base frequencies:  A/T:56.0581%  C/G:43.9419%
916s Pat: 3 bases long with weight 2
916s    1 101 
916s Computing hash parameters...
916s Using 4 hashbits
916s  0%......... (T -0.103 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 10%......... (T -0.090 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 20%......... (T -0.076 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 30%......... (T -0.064 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 40%......... (T -0.053 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 91%........
916s Acceptable hash function found after 1000 cycles.
916s Best uses 2/2 bases and has 0 empties from 2 inputs.
916s Score: 0.96875 (cf. worst: -4.51562)
916s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
916s Total correlation penalty: 0
916s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
916s                                             10
916s                                             ==
916s w[ 0]>>29:                                 -.C
916s w[ 0]>>30:                                  A.-
916s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
916s Ecolist (optimistic): Expcted entries per list: 16
916s Ecolist (optimistic): Minimum chunks per list: 3
916s Would take minimum 256.000000 bytes to make perfect hash.
916s Hashing 662.62 KB of sequence requires: 
916s  ~ linear (in seq length) hashing cost of 1.70 MB
916s  ~ linear (in seq length) expected anchor cost of 15.72 MB
916s Initial hash table uses: 256 bytes (4 bits, 16 entries)
916s Expected memory usage (without anchors): 1.70 MB
916s Expected memory usage (with anchors): 17.42 MB
916s Hash parameters computed in 0.104 seconds
916s Creating storage structures: 16 entries in 256 bytes space.
916s Storage structures created in: 0.000 seconds
916s 
916s Hashing NZ_GG705063.fna forwards
916s  0%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 10%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 20%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 30%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 40%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 50%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 60%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 70%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 90%.........
916s Hashing NZ_GG705063.fna backwards
916s  0%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 10%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 20%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 30%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 40%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 50%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 60%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 90%.........
916s Hashing NZ_GG705063.gbk forwards
916s  0%......... (T -0.026 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 10%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 20%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 30%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 40%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 50%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 60%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 70%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 90%.........
916s Hashing NZ_GG705063.gbk backwards
916s  0%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 10%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 20%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 30%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 40%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 50%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 60%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:52 2024
916s 90%.........
916s Initial hashing took: 0.081 seconds
916s Extracting anchors from hash-space.
917s  (T -0.817 seconds) ETA: Wed Mar 13 22:51:53 2024
917s  6%. (T -0.603 seconds) ETA: Wed Mar 13 22:51:53 2024
917s 18%. (T -0.492 seconds) ETA: Wed Mar 13 22:51:53 2024
917s 31%. (T -0.385 seconds) ETA: Wed Mar 13 22:51:53 2024
917s 43%. (T -0.294 seconds) ETA: Wed Mar 13 22:51:53 2024
917s 56%. (T -0.203 seconds) ETA: Wed Mar 13 22:51:53 2024
917s 68%. (T -0.123 seconds) ETA: Wed Mar 13 22:51:53 2024
917s 81%. (T -0.045 seconds) ETA: Wed Mar 13 22:51:53 2024
917s 93%.
917s Anchor extraction completed in: 0.665 seconds
917s Total anchors: 0
917s Anchor extraction + merge time: 0.665 seconds
917s Total processing time: 0.870 seconds
917s Writing anchors...
917s Total seeds used in anchors: 16
917s Hash performance:
917s  Keys used: 16 out of 16 possible (100.00%).
917s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
917s  Average pigeons per pigeon hole: 1
917s Writing 16 repeats...Output writing finished in: 0.088 seconds
917s Total time: 0.958 seconds
917s Murasaki finished!
917s PASSED MURASAKI
917s 
917s Testing Genepare on NZ_GG705063.fna
917s 1001
917s PASSED GENEPARSE
917s 
917s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
917s Testing mbfa on NZ_GG705063.fna
917s PASSED mbfa
917s 
917s Test Murasaki on NZ_GG705064.fna
917s Verbosity level is: 0
917s Writing to: output/test
917s Pattern is: 101
917s Max usable hash bits: 27
917s Hit filter is: 0
917s Hash table type is: EcoHash
917s Hashing every: 1 base
917s Histogram detail is: 0
917s Hashing function is: 3
917s Collision profiling is: disabled
917s Repeats are: unmasked
917s Mergefilter is at: 100
917s Random seed: 1710370313 (automatic)
917s Bitscore output: on
917s Leave status records: no
917s Join neighbors is: off
917s Target memory is: 3.43 GB
917s Retain members is: true
917s Store repeatmap? yes
917s Reverse complement data is generated on the fly
917s Rifts allowed: 0
917s Fuzzy Extension: yes
917s Score by minimum pair: yes
917s Gapped anchors: no
917s Large sequence support is: enabled => seqpos is 8 bytes
917s Murasaki version 1.68.6 (LARGESEQ)
917s Loading NZ_GG705064.fna
917s Read 165027bp (161.16 KBp) in 0.007 seconds (21.4 MBp/s)
917s Done with forward strand (167894bp). Preparing reverse complement...
917s  <-> Reversing metdata.
917s Done.
917s Seq NZ_GG705064.fna loaded. 163.96 KB
917s Loading NZ_GG705064.gbk
917s Read 165027bp (161.16 KBp) in 0.009 seconds (17.2 MBp/s)
917s Done with forward strand (167894bp). Preparing reverse complement...
917s  <-> Reversing metdata.
917s Done.
917s Seq NZ_GG705064.gbk loaded. 163.96 KB
917s Sequence loading took: 0.017 seconds
917s Forward frequencies:  A:27.6058%  C:21.1172%  G:23.1338%  T:28.1433%
917s Global base frequencies:  A/T:55.7491%  C/G:44.2509%
917s Pat: 3 bases long with weight 2
917s    1 101 
917s Computing hash parameters...
917s Using 4 hashbits
917s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:51:54 2024
917s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 91%........
918s Acceptable hash function found after 1000 cycles.
918s Best uses 2/2 bases and has 0 empties from 2 inputs.
918s Score: 0.96875 (cf. worst: -4.51562)
918s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
918s Total correlation penalty: 0
918s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
918s                                             10
918s                                             ==
918s w[ 0]>>29:                                 -.C
918s w[ 0]>>30:                                  A.-
918s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
918s Ecolist (optimistic): Expcted entries per list: 16
918s Ecolist (optimistic): Minimum chunks per list: 3
918s Would take minimum 256.000000 bytes to make perfect hash.
918s Hashing 644.64 KB of sequence requires: 
918s  ~ linear (in seq length) hashing cost of 1.65 MB
918s  ~ linear (in seq length) expected anchor cost of 15.37 MB
918s Initial hash table uses: 256 bytes (4 bits, 16 entries)
918s Expected memory usage (without anchors): 1.65 MB
918s Expected memory usage (with anchors): 17.02 MB
918s Hash parameters computed in 0.103 seconds
918s Creating storage structures: 16 entries in 256 bytes space.
918s Storage structures created in: 0.000 seconds
918s 
918s Hashing NZ_GG705064.fna forwards
918s  0%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 10%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 20%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 30%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 40%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 50%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 60%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 90%.........
918s Hashing NZ_GG705064.fna backwards
918s  0%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 10%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 20%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 30%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 40%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 50%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 60%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 70%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 90%.........
918s Hashing NZ_GG705064.gbk forwards
918s  0%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 10%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 20%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 30%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 40%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 50%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 60%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 70%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 80%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 90%.........
918s Hashing NZ_GG705064.gbk backwards
918s  0%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 10%......... (T -0.023 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 20%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 30%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 40%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 50%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 60%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 70%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 80%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 90%.........
918s Initial hashing took: 0.098 seconds
918s Extracting anchors from hash-space.
918s  (T -0.762 seconds) ETA: Wed Mar 13 22:51:54 2024
918s  6%. (T -0.589 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 18%. (T -0.427 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 31%. (T -0.409 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 43%. (T -0.306 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 56%. (T -0.233 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 68%. (T -0.131 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 81%. (T -0.048 seconds) ETA: Wed Mar 13 22:51:54 2024
918s 93%.
918s Anchor extraction completed in: 0.676 seconds
918s Total anchors: 0
918s Anchor extraction + merge time: 0.676 seconds
918s Total processing time: 0.894 seconds
918s Writing anchors...
918s Total seeds used in anchors: 16
918s Hash performance:
918s  Keys used: 16 out of 16 possible (100.00%).
918s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
918s  Average pigeons per pigeon hole: 1
919s Writing 16 repeats...Output writing finished in: 0.226 seconds
919s Total time: 1.119 seconds
919s Murasaki finished!
919s PASSED MURASAKI
919s 
919s Testing Genepare on NZ_GG705064.fna
919s 1001
919s PASSED GENEPARSE
919s 
919s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
919s Testing mbfa on NZ_GG705064.fna
919s PASSED mbfa
919s 
919s Test Murasaki on NZ_GG705065.fna
919s Verbosity level is: 0
919s Writing to: output/test
919s Pattern is: 101
919s Max usable hash bits: 27
919s Hit filter is: 0
919s Hash table type is: EcoHash
919s Hashing every: 1 base
919s Histogram detail is: 0
919s Hashing function is: 3
919s Collision profiling is: disabled
919s Repeats are: unmasked
919s Mergefilter is at: 100
919s Random seed: 1710370315 (automatic)
919s Bitscore output: on
919s Leave status records: no
919s Join neighbors is: off
919s Target memory is: 3.43 GB
919s Retain members is: true
919s Store repeatmap? yes
919s Reverse complement data is generated on the fly
919s Rifts allowed: 0
919s Fuzzy Extension: yes
919s Score by minimum pair: yes
919s Gapped anchors: no
919s Large sequence support is: enabled => seqpos is 8 bytes
919s Murasaki version 1.68.6 (LARGESEQ)
919s Loading NZ_GG705065.fna
919s Read 123593bp (120.70 KBp) in 0.006 seconds (20.4 MBp/s)
919s Done with forward strand (130343bp). Preparing reverse complement...
919s  <-> Reversing metdata.
919s Done.
919s Seq NZ_GG705065.fna loaded. 127.29 KB
919s Loading NZ_GG705065.gbk
919s Read 123593bp (120.70 KBp) in 0.007 seconds (16.5 MBp/s)
919s Done with forward strand (130343bp). Preparing reverse complement...
919s  <-> Reversing metdata.
919s Done.
919s Seq NZ_GG705065.gbk loaded. 127.29 KB
919s Sequence loading took: 0.013 seconds
919s Forward frequencies:  A:28.2694%  C:23.0272%  G:21.2504%  T:27.453%
919s Global base frequencies:  A/T:55.7224%  C/G:44.2776%
919s Pat: 3 bases long with weight 2
919s    1 101 
919s Computing hash parameters...
919s Using 4 hashbits
919s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 91%........
919s Acceptable hash function found after 1000 cycles.
919s Best uses 2/2 bases and has 0 empties from 2 inputs.
919s Score: 0.96875 (cf. worst: -4.51562)
919s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
919s Total correlation penalty: 0
919s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
919s                                             10
919s                                             ==
919s w[ 0]>>29:                                 -.C
919s w[ 0]>>30:                                  A.-
919s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
919s Ecolist (optimistic): Expcted entries per list: 15
919s Ecolist (optimistic): Minimum chunks per list: 3
919s Would take minimum 256.000000 bytes to make perfect hash.
919s Hashing 482.79 KB of sequence requires: 
919s  ~ linear (in seq length) hashing cost of 1.18 MB
919s  ~ linear (in seq length) expected anchor cost of 11.93 MB
919s Initial hash table uses: 256 bytes (4 bits, 16 entries)
919s Expected memory usage (without anchors): 1.18 MB
919s Expected memory usage (with anchors): 13.11 MB
919s Hash parameters computed in 0.104 seconds
919s Creating storage structures: 16 entries in 256 bytes space.
919s Storage structures created in: 0.000 seconds
919s 
919s Hashing NZ_GG705065.fna forwards
919s  0%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 10%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 20%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 30%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 40%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 50%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 60%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 70%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 90%.........
919s Hashing NZ_GG705065.fna backwards
919s  0%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 10%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 20%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 30%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 40%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 50%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 60%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 70%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 90%.........
919s Hashing NZ_GG705065.gbk forwards
919s  0%......... (T -0.012 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 10%......... (T -0.015 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 20%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 30%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 40%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 50%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 60%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 90%.........
919s Hashing NZ_GG705065.gbk backwards
919s  0%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 10%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 20%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 30%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 40%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 50%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 60%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 90%.........
919s Initial hashing took: 0.067 seconds
919s Extracting anchors from hash-space.
919s  (T -0.452 seconds) ETA: Wed Mar 13 22:51:55 2024
919s  6%. (T -0.323 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 18%. (T -0.313 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 31%. (T -0.257 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 43%. (T -0.210 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 56%. (T -0.151 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 68%. (T -0.090 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 81%. (T -0.032 seconds) ETA: Wed Mar 13 22:51:55 2024
919s 93%.
919s Anchor extraction completed in: 0.452 seconds
919s Total anchors: 0
919s Anchor extraction + merge time: 0.452 seconds
919s Total processing time: 0.637 seconds
919s Writing anchors...
919s Total seeds used in anchors: 16
919s Hash performance:
919s  Keys used: 16 out of 16 possible (100.00%).
919s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
919s  Average pigeons per pigeon hole: 1
919s Writing 16 repeats...Output writing finished in: 0.064 seconds
919s Total time: 0.701 seconds
919s Murasaki finished!
920s PASSED MURASAKI
920s 
920s Testing Genepare on NZ_GG705065.fna
920s 1001
920s PASSED GENEPARSE
920s 
920s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
920s Testing mbfa on NZ_GG705065.fna
920s PASSED mbfa
920s 
920s Test Murasaki on NZ_GG705066.fna
920s Verbosity level is: 0
920s Writing to: output/test
920s Pattern is: 101
920s Max usable hash bits: 27
920s Hit filter is: 0
920s Hash table type is: EcoHash
920s Hashing every: 1 base
920s Histogram detail is: 0
920s Hashing function is: 3
920s Collision profiling is: disabled
920s Repeats are: unmasked
920s Mergefilter is at: 100
920s Random seed: 1710370316 (automatic)
920s Bitscore output: on
920s Leave status records: no
920s Join neighbors is: off
920s Target memory is: 3.43 GB
920s Retain members is: true
920s Store repeatmap? yes
920s Reverse complement data is generated on the fly
920s Rifts allowed: 0
920s Fuzzy Extension: yes
920s Score by minimum pair: yes
920s Gapped anchors: no
920s Large sequence support is: enabled => seqpos is 8 bytes
920s Murasaki version 1.68.6 (LARGESEQ)
920s Loading NZ_GG705066.fna
920s Read 102039bp (99.65 KBp) in 0.005 seconds (21.4 MBp/s)
920s Done with forward strand (106208bp). Preparing reverse complement...
920s  <-> Reversing metdata.
920s Done.
920s Seq NZ_GG705066.fna loaded. 103.72 KB
920s Loading NZ_GG705066.gbk
920s Read 102039bp (99.65 KBp) in 0.006 seconds (17.3 MBp/s)
920s Done with forward strand (106208bp). Preparing reverse complement...
920s  <-> Reversing metdata.
920s Done.
920s Seq NZ_GG705066.gbk loaded. 103.72 KB
920s Sequence loading took: 0.010 seconds
920s Forward frequencies:  A:29.277%  C:20.206%  G:22.6257%  T:27.8913%
920s Global base frequencies:  A/T:57.1683%  C/G:42.8317%
920s Pat: 3 bases long with weight 2
920s    1 101 
920s Computing hash parameters...
920s Using 4 hashbits
920s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 91%........
920s Acceptable hash function found after 1000 cycles.
920s Best uses 2/2 bases and has 0 empties from 2 inputs.
920s Score: 0.96875 (cf. worst: -4.51562)
920s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
920s Total correlation penalty: 0
920s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
920s                                             10
920s                                             ==
920s w[ 0]>>29:                                 -.C
920s w[ 0]>>30:                                  A.-
920s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
920s Ecolist (optimistic): Expcted entries per list: 15
920s Ecolist (optimistic): Minimum chunks per list: 3
920s Would take minimum 256.000000 bytes to make perfect hash.
920s Hashing 398.59 KB of sequence requires: 
920s  ~ linear (in seq length) hashing cost of 996.46 KB
920s  ~ linear (in seq length) expected anchor cost of 9.72 MB
920s Initial hash table uses: 256 bytes (4 bits, 16 entries)
920s Expected memory usage (without anchors): 996.71 KB
920s Expected memory usage (with anchors): 10.70 MB
920s Hash parameters computed in 0.104 seconds
920s Creating storage structures: 16 entries in 256 bytes space.
920s Storage structures created in: 0.000 seconds
920s 
920s Hashing NZ_GG705066.fna forwards
920s  0%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 10%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 20%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 30%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 40%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 50%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 60%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 70%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 90%.........
920s Hashing NZ_GG705066.fna backwards
920s  0%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 10%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 20%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 30%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 40%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 50%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 60%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 90%.........
920s Hashing NZ_GG705066.gbk forwards
920s  0%......... (T -0.048 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 10%......... (T -0.024 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 20%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 30%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 40%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 50%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 60%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 70%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 90%.........
920s Hashing NZ_GG705066.gbk backwards
920s  0%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 10%......... (T -0.019 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 20%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 30%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 40%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 50%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 60%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 90%.........
920s Initial hashing took: 0.079 seconds
920s Extracting anchors from hash-space.
920s  (T -0.320 seconds) ETA: Wed Mar 13 22:51:56 2024
920s  6%. (T -0.232 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 18%. (T -0.190 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 31%. (T -0.143 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 43%. (T -0.107 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 56%. (T -0.074 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 68%. (T -0.045 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 81%. (T -0.016 seconds) ETA: Wed Mar 13 22:51:56 2024
920s 93%.
920s Anchor extraction completed in: 0.239 seconds
920s Total anchors: 0
920s Anchor extraction + merge time: 0.239 seconds
920s Total processing time: 0.433 seconds
920s Writing anchors...
920s Total seeds used in anchors: 16
920s Hash performance:
920s  Keys used: 16 out of 16 possible (100.00%).
920s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
920s  Average pigeons per pigeon hole: 1
920s Writing 16 repeats...Output writing finished in: 0.055 seconds
920s Total time: 0.487 seconds
920s Murasaki finished!
920s PASSED MURASAKI
920s 
920s Testing Genepare on NZ_GG705066.fna
920s 1001
920s PASSED GENEPARSE
920s 
920s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
920s Testing mbfa on NZ_GG705066.fna
920s PASSED mbfa
920s 
920s Test Murasaki on NZ_GG705067.fna
920s Verbosity level is: 0
920s Writing to: output/test
920s Pattern is: 101
920s Max usable hash bits: 27
920s Hit filter is: 0
920s Hash table type is: EcoHash
920s Hashing every: 1 base
920s Histogram detail is: 0
920s Hashing function is: 3
920s Collision profiling is: disabled
920s Repeats are: unmasked
920s Mergefilter is at: 100
920s Random seed: 1710370316 (automatic)
920s Bitscore output: on
920s Leave status records: no
920s Join neighbors is: off
920s Target memory is: 3.43 GB
920s Retain members is: true
920s Store repeatmap? yes
920s Reverse complement data is generated on the fly
920s Rifts allowed: 0
920s Fuzzy Extension: yes
920s Score by minimum pair: yes
920s Gapped anchors: no
920s Large sequence support is: enabled => seqpos is 8 bytes
920s Murasaki version 1.68.6 (LARGESEQ)
920s Loading NZ_GG705067.fna
920s Read 92138bp (89.98 KBp) in 0.004 seconds (20.2 MBp/s)
920s Done with forward strand (99840bp). Preparing reverse complement...
920s  <-> Reversing metdata.
920s Done.
920s Seq NZ_GG705067.fna loaded. 97.50 KB
920s Loading NZ_GG705067.gbk
920s Read 92138bp (89.98 KBp) in 0.006 seconds (15.2 MBp/s)
920s Done with forward strand (99840bp). Preparing reverse complement...
920s  <-> Reversing metdata.
920s Done.
920s Seq NZ_GG705067.gbk loaded. 97.50 KB
920s Sequence loading took: 0.010 seconds
920s Forward frequencies:  A:28.7753%  C:20.1448%  G:22.0311%  T:29.0488%
920s Global base frequencies:  A/T:57.8241%  C/G:42.1759%
920s Pat: 3 bases long with weight 2
920s    1 101 
920s Computing hash parameters...
920s Using 4 hashbits
920s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:51:57 2024
920s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:51:57 2024
920s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.129 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.097 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.071 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.050 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.014 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 91%........
921s Acceptable hash function found after 1000 cycles.
921s Best uses 2/2 bases and has 0 empties from 2 inputs.
921s Score: 0.96875 (cf. worst: -4.51562)
921s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
921s Total correlation penalty: 0
921s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
921s                                             10
921s                                             ==
921s w[ 0]>>29:                                 -.C
921s w[ 0]>>30:                                  A.-
921s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
921s Ecolist (optimistic): Expcted entries per list: 15
921s Ecolist (optimistic): Minimum chunks per list: 3
921s Would take minimum 256.000000 bytes to make perfect hash.
921s Hashing 359.91 KB of sequence requires: 
921s  ~ linear (in seq length) hashing cost of 899.79 KB
921s  ~ linear (in seq length) expected anchor cost of 9.14 MB
921s Initial hash table uses: 256 bytes (4 bits, 16 entries)
921s Expected memory usage (without anchors): 900.04 KB
921s Expected memory usage (with anchors): 10.02 MB
921s Hash parameters computed in 0.148 seconds
921s Creating storage structures: 16 entries in 256 bytes space.
921s Storage structures created in: 0.000 seconds
921s 
921s Hashing NZ_GG705067.fna forwards
921s  0%......... (T -0.018 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 90%.........
921s Hashing NZ_GG705067.fna backwards
921s  0%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 90%.........
921s Hashing NZ_GG705067.gbk forwards
921s  0%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.016 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 90%.........
921s Hashing NZ_GG705067.gbk backwards
921s  0%......... (T -0.022 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.017 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.010 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 90%.........
921s Initial hashing took: 0.067 seconds
921s Extracting anchors from hash-space.
921s  (T -0.424 seconds) ETA: Wed Mar 13 22:51:57 2024
921s  6%. (T -0.266 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 18%. (T -0.201 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 31%. (T -0.147 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 43%. (T -0.109 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 56%. (T -0.073 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 68%. (T -0.044 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 81%. (T -0.016 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 93%.
921s Anchor extraction completed in: 0.229 seconds
921s Total anchors: 0
921s Anchor extraction + merge time: 0.229 seconds
921s Total processing time: 0.457 seconds
921s Writing anchors...
921s Total seeds used in anchors: 16
921s Hash performance:
921s  Keys used: 16 out of 16 possible (100.00%).
921s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
921s  Average pigeons per pigeon hole: 1
921s Writing 16 repeats...Output writing finished in: 0.049 seconds
921s Total time: 0.506 seconds
921s Murasaki finished!
921s PASSED MURASAKI
921s 
921s Testing Genepare on NZ_GG705067.fna
921s 1001
921s PASSED GENEPARSE
921s 
921s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
921s Testing mbfa on NZ_GG705067.fna
921s PASSED mbfa
921s 
921s Test Murasaki on NZ_GG705068.fna
921s Verbosity level is: 0
921s Writing to: output/test
921s Pattern is: 101
921s Max usable hash bits: 27
921s Hit filter is: 0
921s Hash table type is: EcoHash
921s Hashing every: 1 base
921s Histogram detail is: 0
921s Hashing function is: 3
921s Collision profiling is: disabled
921s Repeats are: unmasked
921s Mergefilter is at: 100
921s Random seed: 1710370317 (automatic)
921s Bitscore output: on
921s Leave status records: no
921s Join neighbors is: off
921s Target memory is: 3.43 GB
921s Retain members is: true
921s Store repeatmap? yes
921s Reverse complement data is generated on the fly
921s Rifts allowed: 0
921s Fuzzy Extension: yes
921s Score by minimum pair: yes
921s Gapped anchors: no
921s Large sequence support is: enabled => seqpos is 8 bytes
921s Murasaki version 1.68.6 (LARGESEQ)
921s Loading NZ_GG705068.fna
921s Read 74802bp (73.05 KBp) in 0.004 seconds (18.9 MBp/s)
921s Done with forward strand (85653bp). Preparing reverse complement...
921s  <-> Reversing metdata.
921s Done.
921s Seq NZ_GG705068.fna loaded. 83.65 KB
921s Loading NZ_GG705068.gbk
921s Read 74802bp (73.05 KBp) in 0.005 seconds (15.6 MBp/s)
921s Done with forward strand (85653bp). Preparing reverse complement...
921s  <-> Reversing metdata.
921s Done.
921s Seq NZ_GG705068.gbk loaded. 83.65 KB
921s Sequence loading took: 0.009 seconds
921s Forward frequencies:  A:30.0326%  C:20.0289%  G:19.2147%  T:30.7238%
921s Global base frequencies:  A/T:60.7564%  C/G:39.2436%
921s Pat: 3 bases long with weight 2
921s    1 101 
921s Computing hash parameters...
921s Using 4 hashbits
921s  0%......... (T -0.097 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.085 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.063 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 91%........
921s Acceptable hash function found after 1000 cycles.
921s Best uses 2/2 bases and has 0 empties from 2 inputs.
921s Score: 0.96875 (cf. worst: -4.51562)
921s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
921s Total correlation penalty: 0
921s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
921s                                             10
921s                                             ==
921s w[ 0]>>29:                                 -.C
921s w[ 0]>>30:                                  A.-
921s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
921s Ecolist (optimistic): Expcted entries per list: 15
921s Ecolist (optimistic): Minimum chunks per list: 3
921s Would take minimum 256.000000 bytes to make perfect hash.
921s Hashing 292.20 KB of sequence requires: 
921s  ~ linear (in seq length) hashing cost of 730.49 KB
921s  ~ linear (in seq length) expected anchor cost of 7.84 MB
921s Initial hash table uses: 256 bytes (4 bits, 16 entries)
921s Expected memory usage (without anchors): 730.74 KB
921s Expected memory usage (with anchors): 8.56 MB
921s Hash parameters computed in 0.106 seconds
921s Creating storage structures: 16 entries in 256 bytes space.
921s Storage structures created in: 0.000 seconds
921s 
921s Hashing NZ_GG705068.fna forwards
921s  0%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 90%.........
921s Hashing NZ_GG705068.fna backwards
921s  0%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 90%.........
921s Hashing NZ_GG705068.gbk forwards
921s  0%......... (T -0.013 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 90%.........
921s Hashing NZ_GG705068.gbk backwards
921s  0%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 10%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 20%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 30%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 40%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 50%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 60%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 70%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:57 2024
921s 90%.........
921s Initial hashing took: 0.037 seconds
921s Extracting anchors from hash-space.
921s  (T -0.396 seconds) ETA: Wed Mar 13 22:51:58 2024
921s  6%. (T -0.275 seconds) ETA: Wed Mar 13 22:51:58 2024
921s 18%. (T -0.233 seconds) ETA: Wed Mar 13 22:51:58 2024
921s 31%. (T -0.165 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 43%. (T -0.124 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 56%. (T -0.084 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 68%. (T -0.052 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 81%. (T -0.019 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 93%.
922s Anchor extraction completed in: 0.281 seconds
922s Total anchors: 0
922s Anchor extraction + merge time: 0.281 seconds
922s Total processing time: 0.433 seconds
922s Writing anchors...
922s Total seeds used in anchors: 16
922s Hash performance:
922s  Keys used: 16 out of 16 possible (100.00%).
922s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
922s  Average pigeons per pigeon hole: 1
922s Writing 16 repeats...Output writing finished in: 0.040 seconds
922s Total time: 0.473 seconds
922s Murasaki finished!
922s PASSED MURASAKI
922s 
922s Testing Genepare on NZ_GG705068.fna
922s 1001
922s PASSED GENEPARSE
922s 
922s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
922s Testing mbfa on NZ_GG705068.fna
922s PASSED mbfa
922s 
922s Test Murasaki on NZ_GG705069.fna
922s Verbosity level is: 0
922s Writing to: output/test
922s Pattern is: 101
922s Max usable hash bits: 27
922s Hit filter is: 0
922s Hash table type is: EcoHash
922s Hashing every: 1 base
922s Histogram detail is: 0
922s Hashing function is: 3
922s Collision profiling is: disabled
922s Repeats are: unmasked
922s Mergefilter is at: 100
922s Random seed: 1710370318 (automatic)
922s Bitscore output: on
922s Leave status records: no
922s Join neighbors is: off
922s Target memory is: 3.43 GB
922s Retain members is: true
922s Store repeatmap? yes
922s Reverse complement data is generated on the fly
922s Rifts allowed: 0
922s Fuzzy Extension: yes
922s Score by minimum pair: yes
922s Gapped anchors: no
922s Large sequence support is: enabled => seqpos is 8 bytes
922s Murasaki version 1.68.6 (LARGESEQ)
922s Loading NZ_GG705069.fna
922s Read 49931bp (48.76 KBp) in 0.003 seconds (16.9 MBp/s)
922s Done with forward strand (54571bp). Preparing reverse complement...
922s  <-> Reversing metdata.
922s Done.
922s Seq NZ_GG705069.fna loaded. 53.29 KB
922s Loading NZ_GG705069.gbk
922s Read 49931bp (48.76 KBp) in 0.003 seconds (15.2 MBp/s)
922s Done with forward strand (54571bp). Preparing reverse complement...
922s  <-> Reversing metdata.
922s Done.
922s Seq NZ_GG705069.gbk loaded. 53.29 KB
922s Sequence loading took: 0.006 seconds
922s Forward frequencies:  A:27.7563%  C:21.4616%  G:21.8221%  T:28.96%
922s Global base frequencies:  A/T:56.7163%  C/G:43.2837%
922s Pat: 3 bases long with weight 2
922s    1 101 
922s Computing hash parameters...
922s Using 4 hashbits
922s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 20%......... (T -0.071 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 91%........
922s Acceptable hash function found after 1000 cycles.
922s Best uses 2/2 bases and has 0 empties from 2 inputs.
922s Score: 0.96875 (cf. worst: -4.51562)
922s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
922s Total correlation penalty: 0
922s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
922s                                             10
922s                                             ==
922s w[ 0]>>29:                                 -.C
922s w[ 0]>>30:                                  A.-
922s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
922s Ecolist (optimistic): Expcted entries per list: 14
922s Ecolist (optimistic): Minimum chunks per list: 3
922s Would take minimum 256.000000 bytes to make perfect hash.
922s Hashing 195.04 KB of sequence requires: 
922s  ~ linear (in seq length) hashing cost of 463.22 KB
922s  ~ linear (in seq length) expected anchor cost of 5.00 MB
922s Initial hash table uses: 256 bytes (4 bits, 16 entries)
922s Expected memory usage (without anchors): 463.47 KB
922s Expected memory usage (with anchors): 5.45 MB
922s Hash parameters computed in 0.102 seconds
922s Creating storage structures: 16 entries in 256 bytes space.
922s Storage structures created in: 0.000 seconds
922s 
922s Hashing NZ_GG705069.fna forwards
922s  0%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 10%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 20%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 30%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 50%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 90%.........
922s Hashing NZ_GG705069.fna backwards
922s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 10%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 20%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 30%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 40%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 50%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 90%.........
922s Hashing NZ_GG705069.gbk forwards
922s  0%......... (T -0.011 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 10%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 20%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 30%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 40%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 50%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 70%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 90%.........
922s Hashing NZ_GG705069.gbk backwards
922s  0%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 10%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 20%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 30%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 40%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 50%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 90%.........
922s Initial hashing took: 0.025 seconds
922s Extracting anchors from hash-space.
922s  (T -0.146 seconds) ETA: Wed Mar 13 22:51:58 2024
922s  6%. (T -0.146 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 18%. (T -0.108 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 31%. (T -0.103 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 43%. (T -0.077 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 56%. (T -0.098 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 68%. (T -0.056 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 81%. (T -0.019 seconds) ETA: Wed Mar 13 22:51:58 2024
922s 93%.
922s Anchor extraction completed in: 0.270 seconds
922s Total anchors: 0
922s Anchor extraction + merge time: 0.270 seconds
922s Total processing time: 0.404 seconds
922s Writing anchors...
922s Total seeds used in anchors: 16
922s Hash performance:
922s  Keys used: 16 out of 16 possible (100.00%).
922s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
922s  Average pigeons per pigeon hole: 1
922s Writing 16 repeats...Output writing finished in: 0.063 seconds
922s Total time: 0.466 seconds
922s Murasaki finished!
923s PASSED MURASAKI
923s 
923s Testing Genepare on NZ_GG705069.fna
923s 1001
923s PASSED GENEPARSE
923s 
923s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
923s Testing mbfa on NZ_GG705069.fna
923s PASSED mbfa
923s 
923s Test Murasaki on NZ_GG705070.fna
923s Verbosity level is: 0
923s Writing to: output/test
923s Pattern is: 101
923s Max usable hash bits: 27
923s Hit filter is: 0
923s Hash table type is: EcoHash
923s Hashing every: 1 base
923s Histogram detail is: 0
923s Hashing function is: 3
923s Collision profiling is: disabled
923s Repeats are: unmasked
923s Mergefilter is at: 100
923s Random seed: 1710370319 (automatic)
923s Bitscore output: on
923s Leave status records: no
923s Join neighbors is: off
923s Target memory is: 3.43 GB
923s Retain members is: true
923s Store repeatmap? yes
923s Reverse complement data is generated on the fly
923s Rifts allowed: 0
923s Fuzzy Extension: yes
923s Score by minimum pair: yes
923s Gapped anchors: no
923s Large sequence support is: enabled => seqpos is 8 bytes
923s Murasaki version 1.68.6 (LARGESEQ)
923s Loading NZ_GG705070.fna
923s Read 51237bp (50.04 KBp) in 0.003 seconds (14.2 MBp/s)
923s Done with forward strand (53557bp). Preparing reverse complement...
923s  <-> Reversing metdata.
923s Done.
923s Seq NZ_GG705070.fna loaded. 52.30 KB
923s Loading NZ_GG705070.gbk
923s Read 51237bp (50.04 KBp) in 0.004 seconds (13.6 MBp/s)
923s Done with forward strand (53557bp). Preparing reverse complement...
923s  <-> Reversing metdata.
923s Done.
923s Seq NZ_GG705070.gbk loaded. 52.30 KB
923s Sequence loading took: 0.007 seconds
923s Forward frequencies:  A:30.0915%  C:19.7416%  G:21.1527%  T:29.0142%
923s Global base frequencies:  A/T:59.1057%  C/G:40.8943%
923s Pat: 3 bases long with weight 2
923s    1 101 
923s Computing hash parameters...
923s Using 4 hashbits
923s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 60%......... (T -0.032 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 91%........
923s Acceptable hash function found after 1000 cycles.
923s Best uses 2/2 bases and has 0 empties from 2 inputs.
923s Score: 0.96875 (cf. worst: -4.51562)
923s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
923s Total correlation penalty: 0
923s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
923s                                             10
923s                                             ==
923s w[ 0]>>29:                                 -.C
923s w[ 0]>>30:                                  A.-
923s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
923s Ecolist (optimistic): Expcted entries per list: 14
923s Ecolist (optimistic): Minimum chunks per list: 3
923s Would take minimum 256.000000 bytes to make perfect hash.
923s Hashing 200.14 KB of sequence requires: 
923s  ~ linear (in seq length) hashing cost of 475.33 KB
923s  ~ linear (in seq length) expected anchor cost of 4.90 MB
923s Initial hash table uses: 256 bytes (4 bits, 16 entries)
923s Expected memory usage (without anchors): 475.58 KB
923s Expected memory usage (with anchors): 5.37 MB
923s Hash parameters computed in 0.106 seconds
923s Creating storage structures: 16 entries in 256 bytes space.
923s Storage structures created in: 0.000 seconds
923s 
923s Hashing NZ_GG705070.fna forwards
923s  0%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 10%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 20%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 30%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 50%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 90%.........
923s Hashing NZ_GG705070.fna backwards
923s  0%......... (T -0.008 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 10%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 20%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 30%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 40%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 50%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 90%.........
923s Hashing NZ_GG705070.gbk forwards
923s  0%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 10%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 20%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 30%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 40%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 50%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 90%.........
923s Hashing NZ_GG705070.gbk backwards
923s  0%......... (T -0.007 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 10%......... (T -0.006 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 20%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 30%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 40%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 50%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 90%.........
923s Initial hashing took: 0.027 seconds
923s Extracting anchors from hash-space.
923s  (T -0.287 seconds) ETA: Wed Mar 13 22:51:59 2024
923s  6%. (T -0.183 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 18%. (T -0.156 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 31%. (T -0.112 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 43%. (T -0.086 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 56%. (T -0.059 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 68%. (T -0.036 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 81%. (T -0.013 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 93%.
923s Anchor extraction completed in: 0.194 seconds
923s Total anchors: 0
923s Anchor extraction + merge time: 0.194 seconds
923s Total processing time: 0.336 seconds
923s Writing anchors...
923s Total seeds used in anchors: 16
923s Hash performance:
923s  Keys used: 16 out of 16 possible (100.00%).
923s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
923s  Average pigeons per pigeon hole: 1
923s Writing 16 repeats...Output writing finished in: 0.028 seconds
923s Total time: 0.363 seconds
923s Murasaki finished!
923s PASSED MURASAKI
923s 
923s Testing Genepare on NZ_GG705070.fna
923s 1001
923s PASSED GENEPARSE
923s 
923s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
923s Testing mbfa on NZ_GG705070.fna
923s PASSED mbfa
923s 
923s Test Murasaki on NZ_GG705071.fna
923s Verbosity level is: 0
923s Writing to: output/test
923s Pattern is: 101
923s Max usable hash bits: 27
923s Hit filter is: 0
923s Hash table type is: EcoHash
923s Hashing every: 1 base
923s Histogram detail is: 0
923s Hashing function is: 3
923s Collision profiling is: disabled
923s Repeats are: unmasked
923s Mergefilter is at: 100
923s Random seed: 1710370319 (automatic)
923s Bitscore output: on
923s Leave status records: no
923s Join neighbors is: off
923s Target memory is: 3.43 GB
923s Retain members is: true
923s Store repeatmap? yes
923s Reverse complement data is generated on the fly
923s Rifts allowed: 0
923s Fuzzy Extension: yes
923s Score by minimum pair: yes
923s Gapped anchors: no
923s Large sequence support is: enabled => seqpos is 8 bytes
923s Murasaki version 1.68.6 (LARGESEQ)
923s Loading NZ_GG705071.fna
923s Read 48160bp (47.03 KBp) in 0.003 seconds (17.6 MBp/s)
923s Done with forward strand (49526bp). Preparing reverse complement...
923s  <-> Reversing metdata.
923s Done.
923s Seq NZ_GG705071.fna loaded. 48.37 KB
923s Loading NZ_GG705071.gbk
923s Read 48160bp (47.03 KBp) in 0.003 seconds (14.6 MBp/s)
923s Done with forward strand (49526bp). Preparing reverse complement...
923s  <-> Reversing metdata.
923s Done.
923s Seq NZ_GG705071.gbk loaded. 48.37 KB
923s Sequence loading took: 0.006 seconds
923s Forward frequencies:  A:33.2766%  C:16.8958%  G:18.0731%  T:31.7546%
923s Global base frequencies:  A/T:65.0311%  C/G:34.9689%
923s Pat: 3 bases long with weight 2
923s    1 101 
923s Computing hash parameters...
923s Using 4 hashbits
923s  0%......... (T -0.091 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:51:59 2024
923s 91%........
923s Acceptable hash function found after 1000 cycles.
923s Best uses 2/2 bases and has 0 empties from 2 inputs.
923s Score: 0.96875 (cf. worst: -4.51562)
923s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
923s Total correlation penalty: 0
923s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
923s                                             10
923s                                             ==
923s w[ 0]>>29:                                 -.C
923s w[ 0]>>30:                                  A.-
923s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
923s Ecolist (optimistic): Expcted entries per list: 14
923s Ecolist (optimistic): Minimum chunks per list: 3
923s Would take minimum 256.000000 bytes to make perfect hash.
923s Hashing 188.12 KB of sequence requires: 
923s  ~ linear (in seq length) hashing cost of 446.80 KB
923s  ~ linear (in seq length) expected anchor cost of 4.53 MB
923s Initial hash table uses: 256 bytes (4 bits, 16 entries)
923s Expected memory usage (without anchors): 447.05 KB
923s Expected memory usage (with anchors): 4.97 MB
923s Hash parameters computed in 0.103 seconds
923s Creating storage structures: 16 entries in 256 bytes space.
923s Storage structures created in: 0.000 seconds
923s 
923s Hashing NZ_GG705071.fna forwards
923s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 90%.........
924s Hashing NZ_GG705071.fna backwards
924s  0%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 10%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 20%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 50%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 90%.........
924s Hashing NZ_GG705071.gbk forwards
924s  0%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 20%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 50%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 90%.........
924s Hashing NZ_GG705071.gbk backwards
924s  0%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 10%......... (T -0.005 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 20%......... (T -0.004 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 30%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 40%......... (T -0.003 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 50%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 60%......... (T -0.002 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 80%......... (T -0.001 seconds) ETA: Wed Mar 13 22:51:59 2024
924s 90%.........
924s Initial hashing took: 0.019 seconds
924s Extracting anchors from hash-space.
924s  (T -0.324 seconds) ETA: Wed Mar 13 22:52:00 2024
924s  6%. (T -0.184 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 18%. (T -0.163 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 31%. (T -0.108 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 43%. (T -0.079 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 56%. (T -0.052 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 68%. (T -0.033 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 81%. (T -0.012 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 93%.
924s Anchor extraction completed in: 0.177 seconds
924s Total anchors: 0
924s Anchor extraction + merge time: 0.177 seconds
924s Total processing time: 0.304 seconds
924s Writing anchors...
924s Total seeds used in anchors: 16
924s Hash performance:
924s  Keys used: 16 out of 16 possible (100.00%).
924s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
924s  Average pigeons per pigeon hole: 1
924s Writing 16 repeats...Output writing finished in: 0.026 seconds
924s Total time: 0.331 seconds
924s Murasaki finished!
924s PASSED MURASAKI
924s 
924s Testing Genepare on NZ_GG705071.fna
924s 1001
924s PASSED GENEPARSE
924s 
924s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
924s Testing mbfa on NZ_GG705071.fna
924s PASSED mbfa
924s 
924s Test Murasaki on NZ_GG705072.fna
924s Verbosity level is: 0
924s Writing to: output/test
924s Pattern is: 101
924s Max usable hash bits: 27
924s Hit filter is: 0
924s Hash table type is: EcoHash
924s Hashing every: 1 base
924s Histogram detail is: 0
924s Hashing function is: 3
924s Collision profiling is: disabled
924s Repeats are: unmasked
924s Mergefilter is at: 100
924s Random seed: 1710370320 (automatic)
924s Bitscore output: on
924s Leave status records: no
924s Join neighbors is: off
924s Target memory is: 3.43 GB
924s Retain members is: true
924s Store repeatmap? yes
924s Reverse complement data is generated on the fly
924s Rifts allowed: 0
924s Fuzzy Extension: yes
924s Score by minimum pair: yes
924s Gapped anchors: no
924s Large sequence support is: enabled => seqpos is 8 bytes
924s Murasaki version 1.68.6 (LARGESEQ)
924s Loading NZ_GG705072.fna
924s Read 25963bp (25.35 KBp) in 0.002 seconds (14.5 MBp/s)
924s Done with forward strand (35758bp). Preparing reverse complement...
924s  <-> Reversing metdata.
924s Done.
924s Seq NZ_GG705072.fna loaded. 34.92 KB
924s Loading NZ_GG705072.gbk
924s Read 25963bp (25.35 KBp) in 0.002 seconds (13.2 MBp/s)
924s Done with forward strand (35758bp). Preparing reverse complement...
924s  <-> Reversing metdata.
924s Done.
924s Seq NZ_GG705072.gbk loaded. 34.92 KB
924s Sequence loading took: 0.004 seconds
924s Forward frequencies:  A:29.6422%  C:19.6742%  G:18.2259%  T:32.4577%
924s Global base frequencies:  A/T:62.0999%  C/G:37.9001%
924s Pat: 3 bases long with weight 2
924s    1 101 
924s Computing hash parameters...
924s Using 4 hashbits
924s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.085 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.063 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 91%........
924s Acceptable hash function found after 1000 cycles.
924s Best uses 2/2 bases and has 0 empties from 2 inputs.
924s Score: 0.96875 (cf. worst: -4.51562)
924s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
924s Total correlation penalty: 0
924s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
924s                                             10
924s                                             ==
924s w[ 0]>>29:                                 -.C
924s w[ 0]>>30:                                  A.-
924s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
924s Ecolist (optimistic): Expcted entries per list: 13
924s Ecolist (optimistic): Minimum chunks per list: 3
924s Would take minimum 256.000000 bytes to make perfect hash.
924s Hashing 101.42 KB of sequence requires: 
924s  ~ linear (in seq length) hashing cost of 240.86 KB
924s  ~ linear (in seq length) expected anchor cost of 3.27 MB
924s Initial hash table uses: 256 bytes (4 bits, 16 entries)
924s Expected memory usage (without anchors): 241.11 KB
924s Expected memory usage (with anchors): 3.51 MB
924s Hash parameters computed in 0.105 seconds
924s Creating storage structures: 16 entries in 256 bytes space.
924s Storage structures created in: 0.000 seconds
924s 
924s Hashing NZ_GG705072.fna forwards
924s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 90%.........
924s Hashing NZ_GG705072.fna backwards
924s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 90%.........
924s Hashing NZ_GG705072.gbk forwards
924s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 90%.........
924s Hashing NZ_GG705072.gbk backwards
924s  0%......... (T -0.004 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 90%.........
924s Initial hashing took: 0.010 seconds
924s Extracting anchors from hash-space.
924s  (T -0.092 seconds) ETA: Wed Mar 13 22:52:00 2024
924s  6%. (T -0.051 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 18%. (T -0.055 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 31%. (T -0.046 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 43%. (T -0.042 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 56%. (T -0.031 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 68%. (T -0.018 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 81%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 93%.
924s Anchor extraction completed in: 0.090 seconds
924s Total anchors: 0
924s Anchor extraction + merge time: 0.090 seconds
924s Total processing time: 0.209 seconds
924s Writing anchors...
924s Total seeds used in anchors: 16
924s Hash performance:
924s  Keys used: 16 out of 16 possible (100.00%).
924s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
924s  Average pigeons per pigeon hole: 1
924s Writing 16 repeats...Output writing finished in: 0.014 seconds
924s Total time: 0.223 seconds
924s Murasaki finished!
924s PASSED MURASAKI
924s 
924s Testing Genepare on NZ_GG705072.fna
924s 1001
924s PASSED GENEPARSE
924s 
924s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
924s Testing mbfa on NZ_GG705072.fna
924s PASSED mbfa
924s 
924s Test Murasaki on NZ_GG705073.fna
924s Verbosity level is: 0
924s Writing to: output/test
924s Pattern is: 101
924s Max usable hash bits: 27
924s Hit filter is: 0
924s Hash table type is: EcoHash
924s Hashing every: 1 base
924s Histogram detail is: 0
924s Hashing function is: 3
924s Collision profiling is: disabled
924s Repeats are: unmasked
924s Mergefilter is at: 100
924s Random seed: 1710370320 (automatic)
924s Bitscore output: on
924s Leave status records: no
924s Join neighbors is: off
924s Target memory is: 3.43 GB
924s Retain members is: true
924s Store repeatmap? yes
924s Reverse complement data is generated on the fly
924s Rifts allowed: 0
924s Fuzzy Extension: yes
924s Score by minimum pair: yes
924s Gapped anchors: no
924s Large sequence support is: enabled => seqpos is 8 bytes
924s Murasaki version 1.68.6 (LARGESEQ)
924s Loading NZ_GG705073.fna
924s Read 29370bp (28.68 KBp) in 0.003 seconds (9.7 MBp/s)
924s Done with forward strand (32703bp). Preparing reverse complement...
924s  <-> Reversing metdata.
924s Done.
924s Seq NZ_GG705073.fna loaded. 31.94 KB
924s Loading NZ_GG705073.gbk
924s Read 29370bp (28.68 KBp) in 0.002 seconds (15.4 MBp/s)
924s Done with forward strand (32703bp). Preparing reverse complement...
924s  <-> Reversing metdata.
924s Done.
924s Seq NZ_GG705073.gbk loaded. 31.94 KB
924s Sequence loading took: 0.005 seconds
924s Forward frequencies:  A:31.0964%  C:18.2635%  G:17.6166%  T:33.0235%
924s Global base frequencies:  A/T:64.1199%  C/G:35.8801%
924s Pat: 3 bases long with weight 2
924s    1 101 
924s Computing hash parameters...
924s Using 4 hashbits
924s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.071 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 91%........
924s Acceptable hash function found after 1000 cycles.
924s Best uses 2/2 bases and has 0 empties from 2 inputs.
924s Score: 0.96875 (cf. worst: -4.51562)
924s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
924s Total correlation penalty: 0
924s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
924s                                             10
924s                                             ==
924s w[ 0]>>29:                                 -.C
924s w[ 0]>>30:                                  A.-
924s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1)
924s Ecolist (optimistic): Expcted entries per list: 13
924s Ecolist (optimistic): Minimum chunks per list: 3
924s Would take minimum 256.000000 bytes to make perfect hash.
924s Hashing 114.73 KB of sequence requires: 
924s  ~ linear (in seq length) hashing cost of 258.13 KB
924s  ~ linear (in seq length) expected anchor cost of 2.99 MB
924s Initial hash table uses: 256 bytes (4 bits, 16 entries)
924s Expected memory usage (without anchors): 258.38 KB
924s Expected memory usage (with anchors): 3.25 MB
924s Hash parameters computed in 0.103 seconds
924s Creating storage structures: 16 entries in 256 bytes space.
924s Storage structures created in: 0.000 seconds
924s 
924s Hashing NZ_GG705073.fna forwards
924s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 90%.........
924s Hashing NZ_GG705073.fna backwards
924s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 90%.........
924s Hashing NZ_GG705073.gbk forwards
924s  0%......... (T -0.008 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.007 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.005 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.004 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 90%.........
924s Hashing NZ_GG705073.gbk backwards
924s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 90%.........
924s Initial hashing took: 0.014 seconds
924s Extracting anchors from hash-space.
924s  (T -0.094 seconds) ETA: Wed Mar 13 22:52:00 2024
924s  6%. (T -0.052 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 18%. (T -0.064 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 31%. (T -0.052 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 43%. (T -0.047 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 56%. (T -0.034 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 68%. (T -0.021 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 81%. (T -0.007 seconds) ETA: Wed Mar 13 22:52:00 2024
924s 93%.
924s Anchor extraction completed in: 0.100 seconds
924s Total anchors: 0
924s Anchor extraction + merge time: 0.100 seconds
924s Total processing time: 0.222 seconds
924s Writing anchors...
924s Total seeds used in anchors: 16
924s Hash performance:
924s  Keys used: 16 out of 16 possible (100.00%).
924s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
924s  Average pigeons per pigeon hole: 1
924s Writing 16 repeats...Output writing finished in: 0.016 seconds
924s Total time: 0.238 seconds
924s Murasaki finished!
924s PASSED MURASAKI
924s 
924s Testing Genepare on NZ_GG705073.fna
924s 1001
924s PASSED GENEPARSE
924s 
925s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
925s Testing mbfa on NZ_GG705073.fna
925s PASSED mbfa
925s 
925s Test Murasaki on NZ_GG705074.fna
925s Verbosity level is: 0
925s Writing to: output/test
925s Pattern is: 101
925s Max usable hash bits: 27
925s Hit filter is: 0
925s Hash table type is: EcoHash
925s Hashing every: 1 base
925s Histogram detail is: 0
925s Hashing function is: 3
925s Collision profiling is: disabled
925s Repeats are: unmasked
925s Mergefilter is at: 100
925s Random seed: 1710370321 (automatic)
925s Bitscore output: on
925s Leave status records: no
925s Join neighbors is: off
925s Target memory is: 3.43 GB
925s Retain members is: true
925s Store repeatmap? yes
925s Reverse complement data is generated on the fly
925s Rifts allowed: 0
925s Fuzzy Extension: yes
925s Score by minimum pair: yes
925s Gapped anchors: no
925s Large sequence support is: enabled => seqpos is 8 bytes
925s Murasaki version 1.68.6 (LARGESEQ)
925s Loading NZ_GG705074.fna
925s Read 27463bp (26.82 KBp) in 0.001 seconds (17.8 MBp/s)
925s Done with forward strand (27739bp). Preparing reverse complement...
925s  <-> Reversing metdata.
925s Done.
925s Seq NZ_GG705074.fna loaded. 27.09 KB
925s Loading NZ_GG705074.gbk
925s Read 27463bp (26.82 KBp) in 0.002 seconds (13.9 MBp/s)
925s Done with forward strand (27739bp). Preparing reverse complement...
925s  <-> Reversing metdata.
925s Done.
925s Seq NZ_GG705074.gbk loaded. 27.09 KB
925s Sequence loading took: 0.003 seconds
925s Forward frequencies:  A:29.7418%  C:22.6122%  G:19.164%  T:28.482%
925s Global base frequencies:  A/T:58.2238%  C/G:41.7762%
925s Pat: 3 bases long with weight 2
925s    1 101 
925s Computing hash parameters...
925s Using 4 hashbits
925s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 91%........
925s Acceptable hash function found after 1000 cycles.
925s Best uses 2/2 bases and has 0 empties from 2 inputs.
925s Score: 0.96875 (cf. worst: -4.51562)
925s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
925s Total correlation penalty: 0
925s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
925s                                             10
925s                                             ==
925s w[ 0]>>29:                                 -.C
925s w[ 0]>>30:                                  A.-
925s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1)
925s Ecolist (optimistic): Expcted entries per list: 13
925s Ecolist (optimistic): Minimum chunks per list: 3
925s Would take minimum 256.000000 bytes to make perfect hash.
925s Hashing 107.28 KB of sequence requires: 
925s  ~ linear (in seq length) hashing cost of 241.37 KB
925s  ~ linear (in seq length) expected anchor cost of 2.54 MB
925s Initial hash table uses: 256 bytes (4 bits, 16 entries)
925s Expected memory usage (without anchors): 241.62 KB
925s Expected memory usage (with anchors): 2.78 MB
925s Hash parameters computed in 0.102 seconds
925s Creating storage structures: 16 entries in 256 bytes space.
925s Storage structures created in: 0.000 seconds
925s 
925s Hashing NZ_GG705074.fna forwards
925s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 90%.........
925s Hashing NZ_GG705074.fna backwards
925s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 90%.........
925s Hashing NZ_GG705074.gbk forwards
925s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 90%.........
925s Hashing NZ_GG705074.gbk backwards
925s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 90%.........
925s Initial hashing took: 0.011 seconds
925s Extracting anchors from hash-space.
925s  (T -0.138 seconds) ETA: Wed Mar 13 22:52:01 2024
925s  6%. (T -0.090 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 18%. (T -0.071 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 31%. (T -0.052 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 43%. (T -0.040 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 56%. (T -0.028 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 68%. (T -0.017 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 81%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 93%.
925s Anchor extraction completed in: 0.093 seconds
925s Total anchors: 0
925s Anchor extraction + merge time: 0.093 seconds
925s Total processing time: 0.210 seconds
925s Writing anchors...
925s Total seeds used in anchors: 16
925s Hash performance:
925s  Keys used: 16 out of 16 possible (100.00%).
925s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
925s  Average pigeons per pigeon hole: 1
925s Writing 16 repeats...Output writing finished in: 0.015 seconds
925s Total time: 0.225 seconds
925s Murasaki finished!
925s PASSED MURASAKI
925s 
925s Testing Genepare on NZ_GG705074.fna
925s 1001
925s PASSED GENEPARSE
925s 
925s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
925s Testing mbfa on NZ_GG705074.fna
925s PASSED mbfa
925s 
925s Test Murasaki on NZ_GG705075.fna
925s Verbosity level is: 0
925s Writing to: output/test
925s Pattern is: 101
925s Max usable hash bits: 27
925s Hit filter is: 0
925s Hash table type is: EcoHash
925s Hashing every: 1 base
925s Histogram detail is: 0
925s Hashing function is: 3
925s Collision profiling is: disabled
925s Repeats are: unmasked
925s Mergefilter is at: 100
925s Random seed: 1710370321 (automatic)
925s Bitscore output: on
925s Leave status records: no
925s Join neighbors is: off
925s Target memory is: 3.43 GB
925s Retain members is: true
925s Store repeatmap? yes
925s Reverse complement data is generated on the fly
925s Rifts allowed: 0
925s Fuzzy Extension: yes
925s Score by minimum pair: yes
925s Gapped anchors: no
925s Large sequence support is: enabled => seqpos is 8 bytes
925s Murasaki version 1.68.6 (LARGESEQ)
925s Loading NZ_GG705075.fna
925s Read 10982bp (10.72 KBp) in 0.001 seconds (12.4 MBp/s)
925s Done with forward strand (12466bp). Preparing reverse complement...
925s  <-> Reversing metdata.
925s Done.
925s Seq NZ_GG705075.fna loaded. 12.17 KB
925s Loading NZ_GG705075.gbk
925s Read 10982bp (10.72 KBp) in 0.001 seconds (11.0 MBp/s)
925s Done with forward strand (12466bp). Preparing reverse complement...
925s  <-> Reversing metdata.
925s Done.
925s Seq NZ_GG705075.gbk loaded. 12.17 KB
925s Sequence loading took: 0.002 seconds
925s Forward frequencies:  A:32.1526%  C:18.9765%  G:18.4484%  T:30.4225%
925s Global base frequencies:  A/T:62.5751%  C/G:37.4249%
925s Pat: 3 bases long with weight 2
925s    1 101 
925s Computing hash parameters...
925s Using 4 hashbits
925s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.085 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 91%........
925s Acceptable hash function found after 1000 cycles.
925s Best uses 2/2 bases and has 0 empties from 2 inputs.
925s Score: 0.96875 (cf. worst: -4.51562)
925s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
925s Total correlation penalty: 0
925s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
925s                                             10
925s                                             ==
925s w[ 0]>>29:                                 -.C
925s w[ 0]>>30:                                  A.-
925s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
925s Ecolist (optimistic): Expcted entries per list: 12
925s Ecolist (optimistic): Minimum chunks per list: 3
925s Would take minimum 256.000000 bytes to make perfect hash.
925s Hashing 42.90 KB of sequence requires: 
925s  ~ linear (in seq length) hashing cost of 91.16 KB
925s  ~ linear (in seq length) expected anchor cost of 1.14 MB
925s Initial hash table uses: 256 bytes (4 bits, 16 entries)
925s Expected memory usage (without anchors): 91.41 KB
925s Expected memory usage (with anchors): 1.23 MB
925s Hash parameters computed in 0.104 seconds
925s Creating storage structures: 16 entries in 256 bytes space.
925s Storage structures created in: 0.000 seconds
925s 
925s Hashing NZ_GG705075.fna forwards
925s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 90%.........
925s Hashing NZ_GG705075.fna backwards
925s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 90%.........
925s Hashing NZ_GG705075.gbk forwards
925s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 90%.........
925s Hashing NZ_GG705075.gbk backwards
925s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 90%.........
925s Initial hashing took: 0.007 seconds
925s Extracting anchors from hash-space.
925s  (T -0.048 seconds) ETA: Wed Mar 13 22:52:01 2024
925s  6%. (T -0.032 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 18%. (T -0.027 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 31%. (T -0.019 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 43%. (T -0.014 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 56%. (T -0.010 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 68%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 81%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 93%.
925s Anchor extraction completed in: 0.034 seconds
925s Total anchors: 0
925s Anchor extraction + merge time: 0.034 seconds
925s Total processing time: 0.147 seconds
925s Writing anchors...
925s Total seeds used in anchors: 16
925s Hash performance:
925s  Keys used: 16 out of 16 possible (100.00%).
925s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
925s  Average pigeons per pigeon hole: 1
925s Writing 16 repeats...Output writing finished in: 0.006 seconds
925s Total time: 0.154 seconds
925s Murasaki finished!
925s PASSED MURASAKI
925s 
925s Testing Genepare on NZ_GG705075.fna
925s 1001
925s PASSED GENEPARSE
925s 
925s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
925s Testing mbfa on NZ_GG705075.fna
925s PASSED mbfa
925s 
925s Test Murasaki on NZ_GG705076.fna
925s Verbosity level is: 0
925s Writing to: output/test
925s Pattern is: 101
925s Max usable hash bits: 27
925s Hit filter is: 0
925s Hash table type is: EcoHash
925s Hashing every: 1 base
925s Histogram detail is: 0
925s Hashing function is: 3
925s Collision profiling is: disabled
925s Repeats are: unmasked
925s Mergefilter is at: 100
925s Random seed: 1710370321 (automatic)
925s Bitscore output: on
925s Leave status records: no
925s Join neighbors is: off
925s Target memory is: 3.43 GB
925s Retain members is: true
925s Store repeatmap? yes
925s Reverse complement data is generated on the fly
925s Rifts allowed: 0
925s Fuzzy Extension: yes
925s Score by minimum pair: yes
925s Gapped anchors: no
925s Large sequence support is: enabled => seqpos is 8 bytes
925s Murasaki version 1.68.6 (LARGESEQ)
925s Loading NZ_GG705076.fna
925s Read 9733bp (9.50 KBp) in 0.001 seconds (10.4 MBp/s)
925s Done with forward strand (9753bp). Preparing reverse complement...
925s  <-> Reversing metdata.
925s Done.
925s Seq NZ_GG705076.fna loaded. 9.52 KB
925s Loading NZ_GG705076.gbk
925s Read 9733bp (9.50 KBp) in 0.002 seconds (6.2 MBp/s)
925s Done with forward strand (9753bp). Preparing reverse complement...
925s  <-> Reversing metdata.
925s Done.
925s Seq NZ_GG705076.gbk loaded. 9.52 KB
925s Sequence loading took: 0.003 seconds
925s Forward frequencies:  A:30.114%  C:17.3122%  G:17.2917%  T:35.282%
925s Global base frequencies:  A/T:65.3961%  C/G:34.6039%
925s Pat: 3 bases long with weight 2
925s    1 101 
925s Computing hash parameters...
925s Using 4 hashbits
925s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:01 2024
925s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 91%........
926s Acceptable hash function found after 1000 cycles.
926s Best uses 2/2 bases and has 0 empties from 2 inputs.
926s Score: 0.96875 (cf. worst: -4.51562)
926s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
926s Total correlation penalty: 0
926s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
926s                                             10
926s                                             ==
926s w[ 0]>>29:                                 -.C
926s w[ 0]>>30:                                  A.-
926s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
926s Ecolist (optimistic): Expcted entries per list: 12
926s Ecolist (optimistic): Minimum chunks per list: 3
926s Would take minimum 256.000000 bytes to make perfect hash.
926s Hashing 38.02 KB of sequence requires: 
926s  ~ linear (in seq length) hashing cost of 80.78 KB
926s  ~ linear (in seq length) expected anchor cost of 914.34 KB
926s Initial hash table uses: 256 bytes (4 bits, 16 entries)
926s Expected memory usage (without anchors): 81.03 KB
926s Expected memory usage (with anchors): 995.38 KB
926s Hash parameters computed in 0.102 seconds
926s Creating storage structures: 16 entries in 256 bytes space.
926s Storage structures created in: 0.000 seconds
926s 
926s Hashing NZ_GG705076.fna forwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 90%.........
926s Hashing NZ_GG705076.fna backwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 90%.........
926s Hashing NZ_GG705076.gbk forwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 90%.........
926s Hashing NZ_GG705076.gbk backwards
926s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:01 2024
926s 90%.........
926s Initial hashing took: 0.005 seconds
926s Extracting anchors from hash-space.
926s  (T -0.047 seconds) ETA: Wed Mar 13 22:52:02 2024
926s  6%. (T -0.031 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 18%. (T -0.027 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 31%. (T -0.018 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 43%. (T -0.014 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 56%. (T -0.009 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 68%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 81%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 93%.
926s Anchor extraction completed in: 0.030 seconds
926s Total anchors: 0
926s Anchor extraction + merge time: 0.030 seconds
926s Total processing time: 0.140 seconds
926s Writing anchors...
926s Total seeds used in anchors: 16
926s Hash performance:
926s  Keys used: 16 out of 16 possible (100.00%).
926s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
926s  Average pigeons per pigeon hole: 1
926s Writing 16 repeats...Output writing finished in: 0.006 seconds
926s Total time: 0.146 seconds
926s Murasaki finished!
926s PASSED MURASAKI
926s 
926s Testing Genepare on NZ_GG705076.fna
926s 1001
926s PASSED GENEPARSE
926s 
926s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
926s Testing mbfa on NZ_GG705076.fna
926s PASSED mbfa
926s 
926s Test Murasaki on NZ_GG705077.fna
926s Verbosity level is: 0
926s Writing to: output/test
926s Pattern is: 101
926s Max usable hash bits: 27
926s Hit filter is: 0
926s Hash table type is: EcoHash
926s Hashing every: 1 base
926s Histogram detail is: 0
926s Hashing function is: 3
926s Collision profiling is: disabled
926s Repeats are: unmasked
926s Mergefilter is at: 100
926s Random seed: 1710370322 (automatic)
926s Bitscore output: on
926s Leave status records: no
926s Join neighbors is: off
926s Target memory is: 3.43 GB
926s Retain members is: true
926s Store repeatmap? yes
926s Reverse complement data is generated on the fly
926s Rifts allowed: 0
926s Fuzzy Extension: yes
926s Score by minimum pair: yes
926s Gapped anchors: no
926s Large sequence support is: enabled => seqpos is 8 bytes
926s Murasaki version 1.68.6 (LARGESEQ)
926s Loading NZ_GG705077.fna
926s Read 9579bp (9.35 KBp) in 0.001 seconds (13.0 MBp/s)
926s Done with forward strand (9752bp). Preparing reverse complement...
926s  <-> Reversing metdata.
926s Done.
926s Seq NZ_GG705077.fna loaded. 9.52 KB
926s Loading NZ_GG705077.gbk
926s Read 9579bp (9.35 KBp) in 0.001 seconds (15.1 MBp/s)
926s Done with forward strand (9752bp). Preparing reverse complement...
926s  <-> Reversing metdata.
926s Done.
926s Seq NZ_GG705077.gbk loaded. 9.52 KB
926s Sequence loading took: 0.001 seconds
926s Forward frequencies:  A:31.0366%  C:19.2713%  G:18.2169%  T:31.4751%
926s Global base frequencies:  A/T:62.5117%  C/G:37.4883%
926s Pat: 3 bases long with weight 2
926s    1 101 
926s Computing hash parameters...
926s Using 4 hashbits
926s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 91%........
926s Acceptable hash function found after 1000 cycles.
926s Best uses 2/2 bases and has 0 empties from 2 inputs.
926s Score: 0.96875 (cf. worst: -4.51562)
926s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
926s Total correlation penalty: 0
926s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
926s                                             10
926s                                             ==
926s w[ 0]>>29:                                 -.C
926s w[ 0]>>30:                                  A.-
926s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
926s Ecolist (optimistic): Expcted entries per list: 12
926s Ecolist (optimistic): Minimum chunks per list: 3
926s Would take minimum 256.000000 bytes to make perfect hash.
926s Hashing 37.42 KB of sequence requires: 
926s  ~ linear (in seq length) hashing cost of 79.50 KB
926s  ~ linear (in seq length) expected anchor cost of 914.25 KB
926s Initial hash table uses: 256 bytes (4 bits, 16 entries)
926s Expected memory usage (without anchors): 79.75 KB
926s Expected memory usage (with anchors): 994.00 KB
926s Hash parameters computed in 0.103 seconds
926s Creating storage structures: 16 entries in 256 bytes space.
926s Storage structures created in: 0.000 seconds
926s 
926s Hashing NZ_GG705077.fna forwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705077.fna backwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705077.gbk forwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705077.gbk backwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Initial hashing took: 0.005 seconds
926s Extracting anchors from hash-space.
926s  (T -0.028 seconds) ETA: Wed Mar 13 22:52:02 2024
926s  6%. (T -0.017 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 18%. (T -0.019 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 31%. (T -0.016 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 43%. (T -0.014 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 56%. (T -0.010 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 68%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 81%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 93%.
926s Anchor extraction completed in: 0.029 seconds
926s Total anchors: 0
926s Anchor extraction + merge time: 0.029 seconds
926s Total processing time: 0.139 seconds
926s Writing anchors...
926s Total seeds used in anchors: 16
926s Hash performance:
926s  Keys used: 16 out of 16 possible (100.00%).
926s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
926s  Average pigeons per pigeon hole: 1
926s Writing 16 repeats...Output writing finished in: 0.006 seconds
926s Total time: 0.144 seconds
926s Murasaki finished!
926s PASSED MURASAKI
926s 
926s Testing Genepare on NZ_GG705077.fna
926s 1001
926s PASSED GENEPARSE
926s 
926s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
926s Testing mbfa on NZ_GG705077.fna
926s PASSED mbfa
926s 
926s Test Murasaki on NZ_GG705078.fna
926s Verbosity level is: 0
926s Writing to: output/test
926s Pattern is: 101
926s Max usable hash bits: 27
926s Hit filter is: 0
926s Hash table type is: EcoHash
926s Hashing every: 1 base
926s Histogram detail is: 0
926s Hashing function is: 3
926s Collision profiling is: disabled
926s Repeats are: unmasked
926s Mergefilter is at: 100
926s Random seed: 1710370322 (automatic)
926s Bitscore output: on
926s Leave status records: no
926s Join neighbors is: off
926s Target memory is: 3.43 GB
926s Retain members is: true
926s Store repeatmap? yes
926s Reverse complement data is generated on the fly
926s Rifts allowed: 0
926s Fuzzy Extension: yes
926s Score by minimum pair: yes
926s Gapped anchors: no
926s Large sequence support is: enabled => seqpos is 8 bytes
926s Murasaki version 1.68.6 (LARGESEQ)
926s Loading NZ_GG705078.fna
926s Read 9549bp (9.33 KBp) in 0.001 seconds (11.2 MBp/s)
926s Done with forward strand (9578bp). Preparing reverse complement...
926s  <-> Reversing metdata.
926s Done.
926s Seq NZ_GG705078.fna loaded. 9.35 KB
926s Loading NZ_GG705078.gbk
926s Read 9549bp (9.33 KBp) in 0.001 seconds (13.8 MBp/s)
926s Done with forward strand (9578bp). Preparing reverse complement...
926s  <-> Reversing metdata.
926s Done.
926s Seq NZ_GG705078.gbk loaded. 9.35 KB
926s Sequence loading took: 0.002 seconds
926s Forward frequencies:  A:29.6366%  C:18.8816%  G:17.583%  T:33.8988%
926s Global base frequencies:  A/T:63.5354%  C/G:36.4646%
926s Pat: 3 bases long with weight 2
926s    1 101 
926s Computing hash parameters...
926s Using 4 hashbits
926s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 91%........
926s Acceptable hash function found after 1000 cycles.
926s Best uses 2/2 bases and has 0 empties from 2 inputs.
926s Score: 0.96875 (cf. worst: -4.51562)
926s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
926s Total correlation penalty: 0
926s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
926s                                             10
926s                                             ==
926s w[ 0]>>29:                                 -.C
926s w[ 0]>>30:                                  A.-
926s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
926s Ecolist (optimistic): Expcted entries per list: 12
926s Ecolist (optimistic): Minimum chunks per list: 3
926s Would take minimum 256.000000 bytes to make perfect hash.
926s Hashing 37.30 KB of sequence requires: 
926s  ~ linear (in seq length) hashing cost of 79.26 KB
926s  ~ linear (in seq length) expected anchor cost of 897.94 KB
926s Initial hash table uses: 256 bytes (4 bits, 16 entries)
926s Expected memory usage (without anchors): 79.51 KB
926s Expected memory usage (with anchors): 977.44 KB
926s Hash parameters computed in 0.103 seconds
926s Creating storage structures: 16 entries in 256 bytes space.
926s Storage structures created in: 0.000 seconds
926s 
926s Hashing NZ_GG705078.fna forwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705078.fna backwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705078.gbk forwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705078.gbk backwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Initial hashing took: 0.005 seconds
926s Extracting anchors from hash-space.
926s  (T -0.025 seconds) ETA: Wed Mar 13 22:52:02 2024
926s  6%. (T -0.015 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 18%. (T -0.018 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 31%. (T -0.015 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 43%. (T -0.013 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 56%. (T -0.010 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 68%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 81%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 93%.
926s Anchor extraction completed in: 0.029 seconds
926s Total anchors: 0
926s Anchor extraction + merge time: 0.029 seconds
926s Total processing time: 0.139 seconds
926s Writing anchors...
926s Total seeds used in anchors: 16
926s Hash performance:
926s  Keys used: 16 out of 16 possible (100.00%).
926s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
926s  Average pigeons per pigeon hole: 1
926s Writing 16 repeats...Output writing finished in: 0.006 seconds
926s Total time: 0.145 seconds
926s Murasaki finished!
926s PASSED MURASAKI
926s 
926s Testing Genepare on NZ_GG705078.fna
926s 1001
926s PASSED GENEPARSE
926s 
926s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
926s Testing mbfa on NZ_GG705078.fna
926s PASSED mbfa
926s 
926s Test Murasaki on NZ_GG705079.fna
926s Verbosity level is: 0
926s Writing to: output/test
926s Pattern is: 101
926s Max usable hash bits: 27
926s Hit filter is: 0
926s Hash table type is: EcoHash
926s Hashing every: 1 base
926s Histogram detail is: 0
926s Hashing function is: 3
926s Collision profiling is: disabled
926s Repeats are: unmasked
926s Mergefilter is at: 100
926s Random seed: 1710370322 (automatic)
926s Bitscore output: on
926s Leave status records: no
926s Join neighbors is: off
926s Target memory is: 3.43 GB
926s Retain members is: true
926s Store repeatmap? yes
926s Reverse complement data is generated on the fly
926s Rifts allowed: 0
926s Fuzzy Extension: yes
926s Score by minimum pair: yes
926s Gapped anchors: no
926s Large sequence support is: enabled => seqpos is 8 bytes
926s Murasaki version 1.68.6 (LARGESEQ)
926s Loading NZ_GG705079.fna
926s Read 7815bp (7.63 KBp) in 0.001 seconds (7.6 MBp/s)
926s Done with forward strand (9392bp). Preparing reverse complement...
926s  <-> Reversing metdata.
926s Done.
926s Seq NZ_GG705079.fna loaded. 9.17 KB
926s Loading NZ_GG705079.gbk
926s Read 7815bp (7.63 KBp) in 0.001 seconds (9.6 MBp/s)
926s Done with forward strand (9392bp). Preparing reverse complement...
926s  <-> Reversing metdata.
926s Done.
926s Seq NZ_GG705079.gbk loaded. 9.17 KB
926s Sequence loading took: 0.002 seconds
926s Forward frequencies:  A:32.1433%  C:19.1555%  G:17.3512%  T:31.35%
926s Global base frequencies:  A/T:63.4933%  C/G:36.5067%
926s Pat: 3 bases long with weight 2
926s    1 101 
926s Computing hash parameters...
926s Using 4 hashbits
926s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 91%........
926s Acceptable hash function found after 1000 cycles.
926s Best uses 2/2 bases and has 0 empties from 2 inputs.
926s Score: 0.96875 (cf. worst: -4.51562)
926s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
926s Total correlation penalty: 0
926s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
926s                                             10
926s                                             ==
926s w[ 0]>>29:                                 -.C
926s w[ 0]>>30:                                  A.-
926s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
926s Ecolist (optimistic): Expcted entries per list: 11
926s Ecolist (optimistic): Minimum chunks per list: 3
926s Would take minimum 256.000000 bytes to make perfect hash.
926s Hashing 30.53 KB of sequence requires: 
926s  ~ linear (in seq length) hashing cost of 64.86 KB
926s  ~ linear (in seq length) expected anchor cost of 880.50 KB
926s Initial hash table uses: 256 bytes (4 bits, 16 entries)
926s Expected memory usage (without anchors): 65.11 KB
926s Expected memory usage (with anchors): 945.61 KB
926s Hash parameters computed in 0.102 seconds
926s Creating storage structures: 16 entries in 256 bytes space.
926s Storage structures created in: 0.000 seconds
926s 
926s Hashing NZ_GG705079.fna forwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705079.fna backwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705079.gbk forwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Hashing NZ_GG705079.gbk backwards
926s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 90%.........
926s Initial hashing took: 0.005 seconds
926s Extracting anchors from hash-space.
926s  (T -0.021 seconds) ETA: Wed Mar 13 22:52:02 2024
926s  6%. (T -0.012 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 18%. (T -0.014 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 31%. (T -0.012 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 43%. (T -0.010 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 56%. (T -0.007 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 68%. (T -0.005 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 81%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:02 2024
926s 93%.
926s Anchor extraction completed in: 0.022 seconds
926s Total anchors: 0
926s Anchor extraction + merge time: 0.022 seconds
926s Total processing time: 0.131 seconds
926s Writing anchors...
926s Total seeds used in anchors: 16
926s Hash performance:
926s  Keys used: 16 out of 16 possible (100.00%).
926s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
926s  Average pigeons per pigeon hole: 1
926s Writing 16 repeats...Output writing finished in: 0.005 seconds
926s Total time: 0.136 seconds
926s Murasaki finished!
926s PASSED MURASAKI
926s 
926s Testing Genepare on NZ_GG705079.fna
927s 1001
927s PASSED GENEPARSE
927s 
927s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
927s Testing mbfa on NZ_GG705079.fna
927s PASSED mbfa
927s 
927s Test Murasaki on NZ_GG705080.fna
927s Verbosity level is: 0
927s Writing to: output/test
927s Pattern is: 101
927s Max usable hash bits: 27
927s Hit filter is: 0
927s Hash table type is: EcoHash
927s Hashing every: 1 base
927s Histogram detail is: 0
927s Hashing function is: 3
927s Collision profiling is: disabled
927s Repeats are: unmasked
927s Mergefilter is at: 100
927s Random seed: 1710370323 (automatic)
927s Bitscore output: on
927s Leave status records: no
927s Join neighbors is: off
927s Target memory is: 3.43 GB
927s Retain members is: true
927s Store repeatmap? yes
927s Reverse complement data is generated on the fly
927s Rifts allowed: 0
927s Fuzzy Extension: yes
927s Score by minimum pair: yes
927s Gapped anchors: no
927s Large sequence support is: enabled => seqpos is 8 bytes
927s Murasaki version 1.68.6 (LARGESEQ)
927s Loading NZ_GG705080.fna
927s Read 6711bp (6.55 KBp) in 0.001 seconds (9.4 MBp/s)
927s Done with forward strand (6711bp). Preparing reverse complement...
927s  <-> Reversing metdata.
927s Done.
927s Seq NZ_GG705080.fna loaded. 6.55 KB
927s Loading NZ_GG705080.gbk
927s Read 6711bp (6.55 KBp) in 0.000 seconds (12.9 MBp/s)
927s Done with forward strand (6711bp). Preparing reverse complement...
927s  <-> Reversing metdata.
927s Done.
927s Seq NZ_GG705080.gbk loaded. 6.55 KB
927s Sequence loading took: 0.001 seconds
927s Forward frequencies:  A:28.3415%  C:19.4308%  G:19.5202%  T:32.7075%
927s Global base frequencies:  A/T:61.049%  C/G:38.951%
927s Pat: 3 bases long with weight 2
927s    1 101 
927s Computing hash parameters...
927s Using 4 hashbits
927s  0%......... (T -0.092 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 91%........
927s Acceptable hash function found after 1000 cycles.
927s Best uses 2/2 bases and has 0 empties from 2 inputs.
927s Score: 0.96875 (cf. worst: -4.51562)
927s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
927s Total correlation penalty: 0
927s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
927s                                             10
927s                                             ==
927s w[ 0]>>29:                                 -.C
927s w[ 0]>>30:                                  A.-
927s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
927s Ecolist (optimistic): Expcted entries per list: 11
927s Ecolist (optimistic): Minimum chunks per list: 4
927s Would take minimum 256.000000 bytes to make perfect hash.
927s Hashing 26.21 KB of sequence requires: 
927s  ~ linear (in seq length) hashing cost of 52.42 KB
927s  ~ linear (in seq length) expected anchor cost of 629.16 KB
927s Initial hash table uses: 256 bytes (4 bits, 16 entries)
927s Expected memory usage (without anchors): 52.67 KB
927s Expected memory usage (with anchors): 681.83 KB
927s Hash parameters computed in 0.102 seconds
927s Creating storage structures: 16 entries in 256 bytes space.
927s Storage structures created in: 0.000 seconds
927s 
927s Hashing NZ_GG705080.fna forwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705080.fna backwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705080.gbk forwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705080.gbk backwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Initial hashing took: 0.003 seconds
927s Extracting anchors from hash-space.
927s  (T -0.010 seconds) ETA: Wed Mar 13 22:52:03 2024
927s  6%. (T -0.013 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 18%. (T -0.010 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 31%. (T -0.011 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 43%. (T -0.008 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 56%. (T -0.007 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 68%. (T -0.004 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 81%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 93%.
927s Anchor extraction completed in: 0.019 seconds
927s Total anchors: 0
927s Anchor extraction + merge time: 0.019 seconds
927s Total processing time: 0.126 seconds
927s Writing anchors...
927s Total seeds used in anchors: 16
927s Hash performance:
927s  Keys used: 16 out of 16 possible (100.00%).
927s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
927s  Average pigeons per pigeon hole: 1
927s Writing 16 repeats...Output writing finished in: 0.004 seconds
927s Total time: 0.130 seconds
927s Murasaki finished!
927s PASSED MURASAKI
927s 
927s Testing Genepare on NZ_GG705080.fna
927s 1001
927s PASSED GENEPARSE
927s 
927s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
927s Testing mbfa on NZ_GG705080.fna
927s PASSED mbfa
927s 
927s Test Murasaki on NZ_GG705081.fna
927s Verbosity level is: 0
927s Writing to: output/test
927s Pattern is: 101
927s Max usable hash bits: 27
927s Hit filter is: 0
927s Hash table type is: EcoHash
927s Hashing every: 1 base
927s Histogram detail is: 0
927s Hashing function is: 3
927s Collision profiling is: disabled
927s Repeats are: unmasked
927s Mergefilter is at: 100
927s Random seed: 1710370323 (automatic)
927s Bitscore output: on
927s Leave status records: no
927s Join neighbors is: off
927s Target memory is: 3.43 GB
927s Retain members is: true
927s Store repeatmap? yes
927s Reverse complement data is generated on the fly
927s Rifts allowed: 0
927s Fuzzy Extension: yes
927s Score by minimum pair: yes
927s Gapped anchors: no
927s Large sequence support is: enabled => seqpos is 8 bytes
927s Murasaki version 1.68.6 (LARGESEQ)
927s Loading NZ_GG705081.fna
927s Read 6691bp (6.53 KBp) in 0.001 seconds (7.9 MBp/s)
927s Done with forward strand (6691bp). Preparing reverse complement...
927s  <-> Reversing metdata.
927s Done.
927s Seq NZ_GG705081.fna loaded. 6.53 KB
927s Loading NZ_GG705081.gbk
927s Read 6691bp (6.53 KBp) in 0.001 seconds (12.4 MBp/s)
927s Done with forward strand (6691bp). Preparing reverse complement...
927s  <-> Reversing metdata.
927s Done.
927s Seq NZ_GG705081.gbk loaded. 6.53 KB
927s Sequence loading took: 0.001 seconds
927s Forward frequencies:  A:31.1314%  C:16.8286%  G:17.6057%  T:34.4343%
927s Global base frequencies:  A/T:65.5657%  C/G:34.4343%
927s Pat: 3 bases long with weight 2
927s    1 101 
927s Computing hash parameters...
927s Using 4 hashbits
927s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 91%........
927s Acceptable hash function found after 1000 cycles.
927s Best uses 2/2 bases and has 0 empties from 2 inputs.
927s Score: 0.96875 (cf. worst: -4.51562)
927s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
927s Total correlation penalty: 0
927s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
927s                                             10
927s                                             ==
927s w[ 0]>>29:                                 -.C
927s w[ 0]>>30:                                  A.-
927s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
927s Ecolist (optimistic): Expcted entries per list: 11
927s Ecolist (optimistic): Minimum chunks per list: 4
927s Would take minimum 256.000000 bytes to make perfect hash.
927s Hashing 26.14 KB of sequence requires: 
927s  ~ linear (in seq length) hashing cost of 52.27 KB
927s  ~ linear (in seq length) expected anchor cost of 627.28 KB
927s Initial hash table uses: 256 bytes (4 bits, 16 entries)
927s Expected memory usage (without anchors): 52.52 KB
927s Expected memory usage (with anchors): 679.80 KB
927s Hash parameters computed in 0.101 seconds
927s Creating storage structures: 16 entries in 256 bytes space.
927s Storage structures created in: 0.000 seconds
927s 
927s Hashing NZ_GG705081.fna forwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705081.fna backwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705081.gbk forwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705081.gbk backwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Initial hashing took: 0.004 seconds
927s Extracting anchors from hash-space.
927s  (T -0.009 seconds) ETA: Wed Mar 13 22:52:03 2024
927s  6%. (T -0.012 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 18%. (T -0.009 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 31%. (T -0.011 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 43%. (T -0.008 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 56%. (T -0.007 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 68%. (T -0.004 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 81%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 93%.
927s Anchor extraction completed in: 0.019 seconds
927s Total anchors: 0
927s Anchor extraction + merge time: 0.019 seconds
927s Total processing time: 0.126 seconds
927s Writing anchors...
927s Total seeds used in anchors: 16
927s Hash performance:
927s  Keys used: 16 out of 16 possible (100.00%).
927s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
927s  Average pigeons per pigeon hole: 1
927s Writing 16 repeats...Output writing finished in: 0.004 seconds
927s Total time: 0.130 seconds
927s Murasaki finished!
927s PASSED MURASAKI
927s 
927s Testing Genepare on NZ_GG705081.fna
927s 1001
927s PASSED GENEPARSE
927s 
927s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
927s Testing mbfa on NZ_GG705081.fna
927s PASSED mbfa
927s 
927s Test Murasaki on NZ_GG705082.fna
927s Verbosity level is: 0
927s Writing to: output/test
927s Pattern is: 101
927s Max usable hash bits: 27
927s Hit filter is: 0
927s Hash table type is: EcoHash
927s Hashing every: 1 base
927s Histogram detail is: 0
927s Hashing function is: 3
927s Collision profiling is: disabled
927s Repeats are: unmasked
927s Mergefilter is at: 100
927s Random seed: 1710370323 (automatic)
927s Bitscore output: on
927s Leave status records: no
927s Join neighbors is: off
927s Target memory is: 3.43 GB
927s Retain members is: true
927s Store repeatmap? yes
927s Reverse complement data is generated on the fly
927s Rifts allowed: 0
927s Fuzzy Extension: yes
927s Score by minimum pair: yes
927s Gapped anchors: no
927s Large sequence support is: enabled => seqpos is 8 bytes
927s Murasaki version 1.68.6 (LARGESEQ)
927s Loading NZ_GG705082.fna
927s Read 6008bp (5.87 KBp) in 0.001 seconds (6.5 MBp/s)
927s Done with forward strand (6008bp). Preparing reverse complement...
927s  <-> Reversing metdata.
927s Done.
927s Seq NZ_GG705082.fna loaded. 5.87 KB
927s Loading NZ_GG705082.gbk
927s Read 6008bp (5.87 KBp) in 0.001 seconds (9.9 MBp/s)
927s Done with forward strand (6008bp). Preparing reverse complement...
927s  <-> Reversing metdata.
927s Done.
927s Seq NZ_GG705082.gbk loaded. 5.87 KB
927s Sequence loading took: 0.002 seconds
927s Forward frequencies:  A:33.0892%  C:18.1591%  G:17.6265%  T:31.1252%
927s Global base frequencies:  A/T:64.2144%  C/G:35.7856%
927s Pat: 3 bases long with weight 2
927s    1 101 
927s Computing hash parameters...
927s Using 4 hashbits
927s  0%......... (T -0.092 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 91%........
927s Acceptable hash function found after 1000 cycles.
927s Best uses 2/2 bases and has 0 empties from 2 inputs.
927s Score: 0.96875 (cf. worst: -4.51562)
927s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
927s Total correlation penalty: 0
927s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
927s                                             10
927s                                             ==
927s w[ 0]>>29:                                 -.C
927s w[ 0]>>30:                                  A.-
927s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
927s Ecolist (optimistic): Expcted entries per list: 11
927s Ecolist (optimistic): Minimum chunks per list: 4
927s Would take minimum 256.000000 bytes to make perfect hash.
927s Hashing 23.47 KB of sequence requires: 
927s  ~ linear (in seq length) hashing cost of 46.94 KB
927s  ~ linear (in seq length) expected anchor cost of 563.25 KB
927s Initial hash table uses: 256 bytes (4 bits, 16 entries)
927s Expected memory usage (without anchors): 47.19 KB
927s Expected memory usage (with anchors): 610.44 KB
927s Hash parameters computed in 0.101 seconds
927s Creating storage structures: 16 entries in 256 bytes space.
927s Storage structures created in: 0.000 seconds
927s 
927s Hashing NZ_GG705082.fna forwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705082.fna backwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705082.gbk forwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Hashing NZ_GG705082.gbk backwards
927s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 90%.........
927s Initial hashing took: 0.004 seconds
927s Extracting anchors from hash-space.
927s  (T -0.007 seconds) ETA: Wed Mar 13 22:52:03 2024
927s  6%. (T -0.011 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 18%. (T -0.009 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 31%. (T -0.010 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 43%. (T -0.007 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 56%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 68%. (T -0.003 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 81%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:03 2024
927s 93%.
927s Anchor extraction completed in: 0.017 seconds
927s Total anchors: 0
927s Anchor extraction + merge time: 0.017 seconds
927s Total processing time: 0.124 seconds
927s Writing anchors...
927s Total seeds used in anchors: 16
927s Hash performance:
927s  Keys used: 16 out of 16 possible (100.00%).
927s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
927s  Average pigeons per pigeon hole: 1
927s Writing 16 repeats...Output writing finished in: 0.004 seconds
927s Total time: 0.128 seconds
927s Murasaki finished!
927s PASSED MURASAKI
927s 
927s Testing Genepare on NZ_GG705082.fna
927s 1001
927s PASSED GENEPARSE
927s 
927s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
927s Testing mbfa on NZ_GG705082.fna
927s PASSED mbfa
927s 
927s Test Murasaki on NZ_GG705083.fna
927s Verbosity level is: 0
927s Writing to: output/test
927s Pattern is: 101
927s Max usable hash bits: 27
927s Hit filter is: 0
927s Hash table type is: EcoHash
927s Hashing every: 1 base
927s Histogram detail is: 0
927s Hashing function is: 3
927s Collision profiling is: disabled
927s Repeats are: unmasked
927s Mergefilter is at: 100
927s Random seed: 1710370323 (automatic)
927s Bitscore output: on
927s Leave status records: no
927s Join neighbors is: off
927s Target memory is: 3.43 GB
927s Retain members is: true
927s Store repeatmap? yes
927s Reverse complement data is generated on the fly
927s Rifts allowed: 0
927s Fuzzy Extension: yes
927s Score by minimum pair: yes
927s Gapped anchors: no
927s Large sequence support is: enabled => seqpos is 8 bytes
927s Murasaki version 1.68.6 (LARGESEQ)
927s Loading NZ_GG705083.fna
927s Read 5476bp (5.35 KBp) in 0.001 seconds (7.1 MBp/s)
927s Done with forward strand (5476bp). Preparing reverse complement...
927s  <-> Reversing metdata.
927s Done.
927s Seq NZ_GG705083.fna loaded. 5.35 KB
927s Loading NZ_GG705083.gbk
927s Read 5476bp (5.35 KBp) in 0.001 seconds (9.1 MBp/s)
927s Done with forward strand (5476bp). Preparing reverse complement...
927s  <-> Reversing metdata.
927s Done.
927s Seq NZ_GG705083.gbk loaded. 5.35 KB
927s Sequence loading took: 0.001 seconds
927s Forward frequencies:  A:28.7071%  C:18.6815%  G:17.7137%  T:34.8977%
927s Global base frequencies:  A/T:63.6048%  C/G:36.3952%
927s Pat: 3 bases long with weight 2
927s    1 101 
927s Computing hash parameters...
927s Using 4 hashbits
927s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:04 2024
927s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:04 2024
927s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 91%........
928s Acceptable hash function found after 1000 cycles.
928s Best uses 2/2 bases and has 0 empties from 2 inputs.
928s Score: 0.96875 (cf. worst: -4.51562)
928s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
928s Total correlation penalty: 0
928s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
928s                                             10
928s                                             ==
928s w[ 0]>>29:                                 -.C
928s w[ 0]>>30:                                  A.-
928s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
928s Ecolist (optimistic): Expcted entries per list: 11
928s Ecolist (optimistic): Minimum chunks per list: 4
928s Would take minimum 256.000000 bytes to make perfect hash.
928s Hashing 21.39 KB of sequence requires: 
928s  ~ linear (in seq length) hashing cost of 42.78 KB
928s  ~ linear (in seq length) expected anchor cost of 513.38 KB
928s Initial hash table uses: 256 bytes (4 bits, 16 entries)
928s Expected memory usage (without anchors): 43.03 KB
928s Expected memory usage (with anchors): 556.41 KB
928s Hash parameters computed in 0.101 seconds
928s Creating storage structures: 16 entries in 256 bytes space.
928s Storage structures created in: 0.000 seconds
928s 
928s Hashing NZ_GG705083.fna forwards
928s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705083.fna backwards
928s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705083.gbk forwards
928s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705083.gbk backwards
928s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Initial hashing took: 0.004 seconds
928s Extracting anchors from hash-space.
928s  (T -0.007 seconds) ETA: Wed Mar 13 22:52:04 2024
928s  6%. (T -0.010 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 18%. (T -0.008 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 31%. (T -0.009 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 43%. (T -0.007 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 56%. (T -0.005 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 68%. (T -0.003 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 81%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 93%.
928s Anchor extraction completed in: 0.015 seconds
928s Total anchors: 0
928s Anchor extraction + merge time: 0.015 seconds
928s Total processing time: 0.122 seconds
928s Writing anchors...
928s Total seeds used in anchors: 16
928s Hash performance:
928s  Keys used: 16 out of 16 possible (100.00%).
928s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
928s  Average pigeons per pigeon hole: 1
928s Writing 16 repeats...Output writing finished in: 0.003 seconds
928s Total time: 0.126 seconds
928s Murasaki finished!
928s PASSED MURASAKI
928s 
928s Testing Genepare on NZ_GG705083.fna
928s 1001
928s PASSED GENEPARSE
928s 
928s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
928s Testing mbfa on NZ_GG705083.fna
928s PASSED mbfa
928s 
928s Test Murasaki on NZ_GG705084.fna
928s Verbosity level is: 0
928s Writing to: output/test
928s Pattern is: 101
928s Max usable hash bits: 27
928s Hit filter is: 0
928s Hash table type is: EcoHash
928s Hashing every: 1 base
928s Histogram detail is: 0
928s Hashing function is: 3
928s Collision profiling is: disabled
928s Repeats are: unmasked
928s Mergefilter is at: 100
928s Random seed: 1710370324 (automatic)
928s Bitscore output: on
928s Leave status records: no
928s Join neighbors is: off
928s Target memory is: 3.43 GB
928s Retain members is: true
928s Store repeatmap? yes
928s Reverse complement data is generated on the fly
928s Rifts allowed: 0
928s Fuzzy Extension: yes
928s Score by minimum pair: yes
928s Gapped anchors: no
928s Large sequence support is: enabled => seqpos is 8 bytes
928s Murasaki version 1.68.6 (LARGESEQ)
928s Loading NZ_GG705084.fna
928s Read 5223bp (5.10 KBp) in 0.001 seconds (5.7 MBp/s)
928s Done with forward strand (5223bp). Preparing reverse complement...
928s  <-> Reversing metdata.
928s Done.
928s Seq NZ_GG705084.fna loaded. 5.10 KB
928s Loading NZ_GG705084.gbk
928s Read 5223bp (5.10 KBp) in 0.001 seconds (8.6 MBp/s)
928s Done with forward strand (5223bp). Preparing reverse complement...
928s  <-> Reversing metdata.
928s Done.
928s Seq NZ_GG705084.gbk loaded. 5.10 KB
928s Sequence loading took: 0.002 seconds
928s Forward frequencies:  A:27.8384%  C:19.7588%  G:16.906%  T:35.4968%
928s Global base frequencies:  A/T:63.3352%  C/G:36.6648%
928s Pat: 3 bases long with weight 2
928s    1 101 
928s Computing hash parameters...
928s Using 4 hashbits
928s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.085 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 91%........
928s Acceptable hash function found after 1000 cycles.
928s Best uses 2/2 bases and has 0 empties from 2 inputs.
928s Score: 0.96875 (cf. worst: -4.51562)
928s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
928s Total correlation penalty: 0
928s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
928s                                             10
928s                                             ==
928s w[ 0]>>29:                                 -.C
928s w[ 0]>>30:                                  A.-
928s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
928s Ecolist (optimistic): Expcted entries per list: 11
928s Ecolist (optimistic): Minimum chunks per list: 4
928s Would take minimum 256.000000 bytes to make perfect hash.
928s Hashing 20.40 KB of sequence requires: 
928s  ~ linear (in seq length) hashing cost of 40.80 KB
928s  ~ linear (in seq length) expected anchor cost of 489.66 KB
928s Initial hash table uses: 256 bytes (4 bits, 16 entries)
928s Expected memory usage (without anchors): 41.05 KB
928s Expected memory usage (with anchors): 530.70 KB
928s Hash parameters computed in 0.103 seconds
928s Creating storage structures: 16 entries in 256 bytes space.
928s Storage structures created in: 0.000 seconds
928s 
928s Hashing NZ_GG705084.fna forwards
928s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705084.fna backwards
928s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705084.gbk forwards
928s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705084.gbk backwards
928s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Initial hashing took: 0.004 seconds
928s Extracting anchors from hash-space.
928s  (T -0.014 seconds) ETA: Wed Mar 13 22:52:04 2024
928s  6%. (T -0.017 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 18%. (T -0.011 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 31%. (T -0.009 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 43%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 56%. (T -0.004 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 68%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 81%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 93%.
928s Anchor extraction completed in: 0.014 seconds
928s Total anchors: 0
928s Anchor extraction + merge time: 0.014 seconds
928s Total processing time: 0.124 seconds
928s Writing anchors...
928s Total seeds used in anchors: 16
928s Hash performance:
928s  Keys used: 16 out of 16 possible (100.00%).
928s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
928s  Average pigeons per pigeon hole: 1
928s Writing 16 repeats...Output writing finished in: 0.003 seconds
928s Total time: 0.127 seconds
928s Murasaki finished!
928s PASSED MURASAKI
928s 
928s Testing Genepare on NZ_GG705084.fna
928s 1001
928s PASSED GENEPARSE
928s 
928s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
928s Testing mbfa on NZ_GG705084.fna
928s PASSED mbfa
928s 
928s Test Murasaki on NZ_GG705085.fna
928s Verbosity level is: 0
928s Writing to: output/test
928s Pattern is: 101
928s Max usable hash bits: 27
928s Hit filter is: 0
928s Hash table type is: EcoHash
928s Hashing every: 1 base
928s Histogram detail is: 0
928s Hashing function is: 3
928s Collision profiling is: disabled
928s Repeats are: unmasked
928s Mergefilter is at: 100
928s Random seed: 1710370324 (automatic)
928s Bitscore output: on
928s Leave status records: no
928s Join neighbors is: off
928s Target memory is: 3.43 GB
928s Retain members is: true
928s Store repeatmap? yes
928s Reverse complement data is generated on the fly
928s Rifts allowed: 0
928s Fuzzy Extension: yes
928s Score by minimum pair: yes
928s Gapped anchors: no
928s Large sequence support is: enabled => seqpos is 8 bytes
928s Murasaki version 1.68.6 (LARGESEQ)
928s Loading NZ_GG705085.fna
928s Read 4549bp (4.44 KBp) in 0.001 seconds (6.3 MBp/s)
928s Done with forward strand (5055bp). Preparing reverse complement...
928s  <-> Reversing metdata.
928s Done.
928s Seq NZ_GG705085.fna loaded. 4.94 KB
928s Loading NZ_GG705085.gbk
928s Read 4549bp (4.44 KBp) in 0.001 seconds (8.1 MBp/s)
928s Done with forward strand (5055bp). Preparing reverse complement...
928s  <-> Reversing metdata.
928s Done.
928s Seq NZ_GG705085.gbk loaded. 4.94 KB
928s Sequence loading took: 0.001 seconds
928s Forward frequencies:  A:26.6212%  C:21.1255%  G:30.0286%  T:22.2247%
928s Global base frequencies:  A/T:48.8459%  C/G:51.1541%
928s Pat: 3 bases long with weight 2
928s    1 101 
928s Computing hash parameters...
928s Using 4 hashbits
928s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 91%........
928s Acceptable hash function found after 1000 cycles.
928s Best uses 2/2 bases and has 0 empties from 2 inputs.
928s Score: 0.96875 (cf. worst: -4.51562)
928s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
928s Total correlation penalty: 0
928s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
928s                                             10
928s                                             ==
928s w[ 0]>>29:                                 -.C
928s w[ 0]>>30:                                  A.-
928s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
928s Ecolist (optimistic): Expcted entries per list: 11
928s Ecolist (optimistic): Minimum chunks per list: 4
928s Would take minimum 256.000000 bytes to make perfect hash.
928s Hashing 17.77 KB of sequence requires: 
928s  ~ linear (in seq length) hashing cost of 35.53 KB
928s  ~ linear (in seq length) expected anchor cost of 473.91 KB
928s Initial hash table uses: 256 bytes (4 bits, 16 entries)
928s Expected memory usage (without anchors): 35.78 KB
928s Expected memory usage (with anchors): 509.69 KB
928s Hash parameters computed in 0.103 seconds
928s Creating storage structures: 16 entries in 256 bytes space.
928s Storage structures created in: 0.000 seconds
928s 
928s Hashing NZ_GG705085.fna forwards
928s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705085.fna backwards
928s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705085.gbk forwards
928s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705085.gbk backwards
928s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Initial hashing took: 0.007 seconds
928s Extracting anchors from hash-space.
928s  (T -0.012 seconds) ETA: Wed Mar 13 22:52:04 2024
928s  6%. (T -0.010 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 18%. (T -0.008 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 31%. (T -0.007 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 43%. (T -0.005 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 56%. (T -0.004 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 68%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 81%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 93%.
928s Anchor extraction completed in: 0.013 seconds
928s Total anchors: 0
928s Anchor extraction + merge time: 0.013 seconds
928s Total processing time: 0.124 seconds
928s Writing anchors...
928s Total seeds used in anchors: 16
928s Hash performance:
928s  Keys used: 16 out of 16 possible (100.00%).
928s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
928s  Average pigeons per pigeon hole: 1
928s Writing 16 repeats...Output writing finished in: 0.003 seconds
928s Total time: 0.127 seconds
928s Murasaki finished!
928s PASSED MURASAKI
928s 
928s Testing Genepare on NZ_GG705085.fna
928s 1001
928s PASSED GENEPARSE
928s 
928s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
928s Testing mbfa on NZ_GG705085.fna
928s PASSED mbfa
928s 
928s Test Murasaki on NZ_GG705086.fna
928s Verbosity level is: 0
928s Writing to: output/test
928s Pattern is: 101
928s Max usable hash bits: 27
928s Hit filter is: 0
928s Hash table type is: EcoHash
928s Hashing every: 1 base
928s Histogram detail is: 0
928s Hashing function is: 3
928s Collision profiling is: disabled
928s Repeats are: unmasked
928s Mergefilter is at: 100
928s Random seed: 1710370324 (automatic)
928s Bitscore output: on
928s Leave status records: no
928s Join neighbors is: off
928s Target memory is: 3.43 GB
928s Retain members is: true
928s Store repeatmap? yes
928s Reverse complement data is generated on the fly
928s Rifts allowed: 0
928s Fuzzy Extension: yes
928s Score by minimum pair: yes
928s Gapped anchors: no
928s Large sequence support is: enabled => seqpos is 8 bytes
928s Murasaki version 1.68.6 (LARGESEQ)
928s Loading NZ_GG705086.fna
928s Read 4868bp (4.75 KBp) in 0.001 seconds (7.4 MBp/s)
928s Done with forward strand (4868bp). Preparing reverse complement...
928s  <-> Reversing metdata.
928s Done.
928s Seq NZ_GG705086.fna loaded. 4.75 KB
928s Loading NZ_GG705086.gbk
928s Read 4868bp (4.75 KBp) in 0.000 seconds (10.7 MBp/s)
928s Done with forward strand (4868bp). Preparing reverse complement...
928s  <-> Reversing metdata.
928s Done.
928s Seq NZ_GG705086.gbk loaded. 4.75 KB
928s Sequence loading took: 0.001 seconds
928s Forward frequencies:  A:26.9104%  C:22.5349%  G:22.4938%  T:28.0608%
928s Global base frequencies:  A/T:54.9712%  C/G:45.0288%
928s Pat: 3 bases long with weight 2
928s    1 101 
928s Computing hash parameters...
928s Using 4 hashbits
928s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.063 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 91%........
928s Acceptable hash function found after 1000 cycles.
928s Best uses 2/2 bases and has 0 empties from 2 inputs.
928s Score: 0.96875 (cf. worst: -4.51562)
928s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
928s Total correlation penalty: 0
928s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
928s                                             10
928s                                             ==
928s w[ 0]>>29:                                 -.C
928s w[ 0]>>30:                                  A.-
928s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
928s Ecolist (optimistic): Expcted entries per list: 11
928s Ecolist (optimistic): Minimum chunks per list: 4
928s Would take minimum 256.000000 bytes to make perfect hash.
928s Hashing 19.02 KB of sequence requires: 
928s  ~ linear (in seq length) hashing cost of 38.03 KB
928s  ~ linear (in seq length) expected anchor cost of 456.38 KB
928s Initial hash table uses: 256 bytes (4 bits, 16 entries)
928s Expected memory usage (without anchors): 38.28 KB
928s Expected memory usage (with anchors): 494.66 KB
928s Hash parameters computed in 0.104 seconds
928s Creating storage structures: 16 entries in 256 bytes space.
928s Storage structures created in: 0.000 seconds
928s 
928s Hashing NZ_GG705086.fna forwards
928s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705086.fna backwards
928s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705086.gbk forwards
928s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Hashing NZ_GG705086.gbk backwards
928s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 90%.........
928s Initial hashing took: 0.004 seconds
928s Extracting anchors from hash-space.
928s  (T -0.013 seconds) ETA: Wed Mar 13 22:52:04 2024
928s  6%. (T -0.013 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 18%. (T -0.009 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 31%. (T -0.008 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 43%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 56%. (T -0.004 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 68%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 81%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:04 2024
928s 93%.
928s Anchor extraction completed in: 0.013 seconds
928s Total anchors: 0
928s Anchor extraction + merge time: 0.013 seconds
928s Total processing time: 0.124 seconds
928s Writing anchors...
928s Total seeds used in anchors: 16
928s Hash performance:
928s  Keys used: 16 out of 16 possible (100.00%).
928s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
928s  Average pigeons per pigeon hole: 1
928s Writing 16 repeats...Output writing finished in: 0.003 seconds
928s Total time: 0.127 seconds
928s Murasaki finished!
928s PASSED MURASAKI
928s 
928s Testing Genepare on NZ_GG705086.fna
928s 1001
928s PASSED GENEPARSE
928s 
928s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
929s Testing mbfa on NZ_GG705086.fna
929s PASSED mbfa
929s 
929s Test Murasaki on NZ_GG705087.fna
929s Verbosity level is: 0
929s Writing to: output/test
929s Pattern is: 101
929s Max usable hash bits: 27
929s Hit filter is: 0
929s Hash table type is: EcoHash
929s Hashing every: 1 base
929s Histogram detail is: 0
929s Hashing function is: 3
929s Collision profiling is: disabled
929s Repeats are: unmasked
929s Mergefilter is at: 100
929s Random seed: 1710370325 (automatic)
929s Bitscore output: on
929s Leave status records: no
929s Join neighbors is: off
929s Target memory is: 3.43 GB
929s Retain members is: true
929s Store repeatmap? yes
929s Reverse complement data is generated on the fly
929s Rifts allowed: 0
929s Fuzzy Extension: yes
929s Score by minimum pair: yes
929s Gapped anchors: no
929s Large sequence support is: enabled => seqpos is 8 bytes
929s Murasaki version 1.68.6 (LARGESEQ)
929s Loading NZ_GG705087.fna
929s Read 4863bp (4.75 KBp) in 0.001 seconds (7.0 MBp/s)
929s Done with forward strand (4863bp). Preparing reverse complement...
929s  <-> Reversing metdata.
929s Done.
929s Seq NZ_GG705087.fna loaded. 4.75 KB
929s Loading NZ_GG705087.gbk
929s Read 4863bp (4.75 KBp) in 0.001 seconds (5.2 MBp/s)
929s Done with forward strand (4863bp). Preparing reverse complement...
929s  <-> Reversing metdata.
929s Done.
929s Seq NZ_GG705087.gbk loaded. 4.75 KB
929s Sequence loading took: 0.002 seconds
929s Forward frequencies:  A:34.0119%  C:17.4378%  G:19.2679%  T:29.2823%
929s Global base frequencies:  A/T:63.2943%  C/G:36.7057%
929s Pat: 3 bases long with weight 2
929s    1 101 
929s Computing hash parameters...
929s Using 4 hashbits
929s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.071 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 91%........
929s Acceptable hash function found after 1000 cycles.
929s Best uses 2/2 bases and has 0 empties from 2 inputs.
929s Score: 0.96875 (cf. worst: -4.51562)
929s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
929s Total correlation penalty: 0
929s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
929s                                             10
929s                                             ==
929s w[ 0]>>29:                                 -.C
929s w[ 0]>>30:                                  A.-
929s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
929s Ecolist (optimistic): Expcted entries per list: 11
929s Ecolist (optimistic): Minimum chunks per list: 4
929s Would take minimum 256.000000 bytes to make perfect hash.
929s Hashing 19.00 KB of sequence requires: 
929s  ~ linear (in seq length) hashing cost of 37.98 KB
929s  ~ linear (in seq length) expected anchor cost of 455.91 KB
929s Initial hash table uses: 256 bytes (4 bits, 16 entries)
929s Expected memory usage (without anchors): 38.23 KB
929s Expected memory usage (with anchors): 494.14 KB
929s Hash parameters computed in 0.103 seconds
929s Creating storage structures: 16 entries in 256 bytes space.
929s Storage structures created in: 0.000 seconds
929s 
929s Hashing NZ_GG705087.fna forwards
929s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705087.fna backwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705087.gbk forwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705087.gbk backwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Initial hashing took: 0.003 seconds
929s Extracting anchors from hash-space.
929s  (T -0.013 seconds) ETA: Wed Mar 13 22:52:05 2024
929s  6%. (T -0.017 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 18%. (T -0.011 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 31%. (T -0.009 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 43%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 56%. (T -0.004 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 68%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 81%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 93%.
929s Anchor extraction completed in: 0.014 seconds
929s Total anchors: 0
929s Anchor extraction + merge time: 0.014 seconds
929s Total processing time: 0.122 seconds
929s Writing anchors...
929s Total seeds used in anchors: 16
929s Hash performance:
929s  Keys used: 16 out of 16 possible (100.00%).
929s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
929s  Average pigeons per pigeon hole: 1
929s Writing 16 repeats...Output writing finished in: 0.003 seconds
929s Total time: 0.125 seconds
929s Murasaki finished!
929s PASSED MURASAKI
929s 
929s Testing Genepare on NZ_GG705087.fna
929s 1001
929s PASSED GENEPARSE
929s 
929s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
929s Testing mbfa on NZ_GG705087.fna
929s PASSED mbfa
929s 
929s Test Murasaki on NZ_GG705088.fna
929s Verbosity level is: 0
929s Writing to: output/test
929s Pattern is: 101
929s Max usable hash bits: 27
929s Hit filter is: 0
929s Hash table type is: EcoHash
929s Hashing every: 1 base
929s Histogram detail is: 0
929s Hashing function is: 3
929s Collision profiling is: disabled
929s Repeats are: unmasked
929s Mergefilter is at: 100
929s Random seed: 1710370325 (automatic)
929s Bitscore output: on
929s Leave status records: no
929s Join neighbors is: off
929s Target memory is: 3.43 GB
929s Retain members is: true
929s Store repeatmap? yes
929s Reverse complement data is generated on the fly
929s Rifts allowed: 0
929s Fuzzy Extension: yes
929s Score by minimum pair: yes
929s Gapped anchors: no
929s Large sequence support is: enabled => seqpos is 8 bytes
929s Murasaki version 1.68.6 (LARGESEQ)
929s Loading NZ_GG705088.fna
929s Read 2146bp (2.10 KBp) in 0.001 seconds (3.5 MBp/s)
929s Done with forward strand (2146bp). Preparing reverse complement...
929s  <-> Reversing metdata.
929s Done.
929s Seq NZ_GG705088.fna loaded. 2.10 KB
929s Loading NZ_GG705088.gbk
929s Read 2146bp (2.10 KBp) in 0.000 seconds (6.7 MBp/s)
929s Done with forward strand (2146bp). Preparing reverse complement...
929s  <-> Reversing metdata.
929s Done.
929s Seq NZ_GG705088.gbk loaded. 2.10 KB
929s Sequence loading took: 0.001 seconds
929s Forward frequencies:  A:27.4464%  C:18.1733%  G:20.876%  T:33.5042%
929s Global base frequencies:  A/T:60.9506%  C/G:39.0494%
929s Pat: 3 bases long with weight 2
929s    1 101 
929s Computing hash parameters...
929s Using 4 hashbits
929s  0%......... (T -0.105 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.091 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.079 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.067 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.055 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.044 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.033 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.022 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.010 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 91%........
929s Acceptable hash function found after 1000 cycles.
929s Best uses 2/2 bases and has 0 empties from 2 inputs.
929s Score: 0.96875 (cf. worst: -4.51562)
929s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
929s Total correlation penalty: 0
929s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
929s                                             10
929s                                             ==
929s w[ 0]>>29:                                 -.C
929s w[ 0]>>30:                                  A.-
929s Ecolist (optimistic): (seqbits: 2 idxbits: 13 minBlocks: 1 initblocks: 1)
929s Ecolist (optimistic): Expcted entries per list: 10
929s Ecolist (optimistic): Minimum chunks per list: 4
929s Would take minimum 256.000000 bytes to make perfect hash.
929s Hashing 8.38 KB of sequence requires: 
929s  ~ linear (in seq length) hashing cost of 15.72 KB
929s  ~ linear (in seq length) expected anchor cost of 201.19 KB
929s Initial hash table uses: 256 bytes (4 bits, 16 entries)
929s Expected memory usage (without anchors): 15.97 KB
929s Expected memory usage (with anchors): 217.16 KB
929s Hash parameters computed in 0.107 seconds
929s Creating storage structures: 16 entries in 256 bytes space.
929s Storage structures created in: 0.000 seconds
929s 
929s Hashing NZ_GG705088.fna forwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705088.fna backwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705088.gbk forwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705088.gbk backwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Initial hashing took: 0.002 seconds
929s Extracting anchors from hash-space.
929s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:05 2024
929s  6%. (T -0.006 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 18%. (T -0.004 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 31%. (T -0.003 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 43%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 56%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 68%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 93%.
929s Anchor extraction completed in: 0.005 seconds
929s Total anchors: 0
929s Anchor extraction + merge time: 0.005 seconds
929s Total processing time: 0.116 seconds
929s Writing anchors...
929s Total seeds used in anchors: 16
929s Hash performance:
929s  Keys used: 16 out of 16 possible (100.00%).
929s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
929s  Average pigeons per pigeon hole: 1
929s Writing 16 repeats...Output writing finished in: 0.002 seconds
929s Total time: 0.118 seconds
929s Murasaki finished!
929s PASSED MURASAKI
929s 
929s Testing Genepare on NZ_GG705088.fna
929s 1001
929s PASSED GENEPARSE
929s 
929s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
929s Testing mbfa on NZ_GG705088.fna
929s PASSED mbfa
929s 
929s Test Murasaki on NZ_GG705089.fna
929s Verbosity level is: 0
929s Writing to: output/test
929s Pattern is: 101
929s Max usable hash bits: 27
929s Hit filter is: 0
929s Hash table type is: EcoHash
929s Hashing every: 1 base
929s Histogram detail is: 0
929s Hashing function is: 3
929s Collision profiling is: disabled
929s Repeats are: unmasked
929s Mergefilter is at: 100
929s Random seed: 1710370325 (automatic)
929s Bitscore output: on
929s Leave status records: no
929s Join neighbors is: off
929s Target memory is: 3.43 GB
929s Retain members is: true
929s Store repeatmap? yes
929s Reverse complement data is generated on the fly
929s Rifts allowed: 0
929s Fuzzy Extension: yes
929s Score by minimum pair: yes
929s Gapped anchors: no
929s Large sequence support is: enabled => seqpos is 8 bytes
929s Murasaki version 1.68.6 (LARGESEQ)
929s Loading NZ_GG705089.fna
929s Read 1396bp (1.36 KBp) in 0.000 seconds (2.8 MBp/s)
929s Done with forward strand (1396bp). Preparing reverse complement...
929s  <-> Reversing metdata.
929s Done.
929s Seq NZ_GG705089.fna loaded. 1.36 KB
929s Loading NZ_GG705089.gbk
929s Read 1396bp (1.36 KBp) in 0.001 seconds (1.5 MBp/s)
929s Done with forward strand (1396bp). Preparing reverse complement...
929s  <-> Reversing metdata.
929s Done.
929s Seq NZ_GG705089.gbk loaded. 1.36 KB
929s Sequence loading took: 0.001 seconds
929s Forward frequencies:  A:33.4527%  C:18.0516%  G:19.8424%  T:28.6533%
929s Global base frequencies:  A/T:62.106%  C/G:37.894%
929s Pat: 3 bases long with weight 2
929s    1 101 
929s Computing hash parameters...
929s Using 4 hashbits
929s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 91%........
929s Acceptable hash function found after 1000 cycles.
929s Best uses 2/2 bases and has 0 empties from 2 inputs.
929s Score: 0.96875 (cf. worst: -4.51562)
929s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
929s Total correlation penalty: 0
929s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
929s                                             10
929s                                             ==
929s w[ 0]>>29:                                 -.C
929s w[ 0]>>30:                                  A.-
929s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
929s Ecolist (optimistic): Expcted entries per list: 9
929s Ecolist (optimistic): Minimum chunks per list: 4
929s Would take minimum 256.000000 bytes to make perfect hash.
929s Hashing 5.45 KB of sequence requires: 
929s  ~ linear (in seq length) hashing cost of 9.54 KB
929s  ~ linear (in seq length) expected anchor cost of 130.88 KB
929s Initial hash table uses: 256 bytes (4 bits, 16 entries)
929s Expected memory usage (without anchors): 9.79 KB
929s Expected memory usage (with anchors): 140.67 KB
929s Hash parameters computed in 0.102 seconds
929s Creating storage structures: 16 entries in 256 bytes space.
929s Storage structures created in: 0.000 seconds
929s 
929s Hashing NZ_GG705089.fna forwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705089.fna backwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705089.gbk forwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705089.gbk backwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Initial hashing took: 0.002 seconds
929s Extracting anchors from hash-space.
929s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:05 2024
929s  6%. (T -0.004 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 18%. (T -0.003 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 31%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 68%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 93%.
929s Anchor extraction completed in: 0.003 seconds
929s Total anchors: 0
929s Anchor extraction + merge time: 0.003 seconds
929s Total processing time: 0.109 seconds
929s Writing anchors...
929s Total seeds used in anchors: 16
929s Hash performance:
929s  Keys used: 16 out of 16 possible (100.00%).
929s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
929s  Average pigeons per pigeon hole: 1
929s Writing 16 repeats...Output writing finished in: 0.001 seconds
929s Total time: 0.110 seconds
929s Murasaki finished!
929s PASSED MURASAKI
929s 
929s Testing Genepare on NZ_GG705089.fna
929s 397
929s PASSED GENEPARSE
929s 
929s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
929s Testing mbfa on NZ_GG705089.fna
929s PASSED mbfa
929s 
929s Test Murasaki on NZ_GG705090.fna
929s Verbosity level is: 0
929s Writing to: output/test
929s Pattern is: 101
929s Max usable hash bits: 27
929s Hit filter is: 0
929s Hash table type is: EcoHash
929s Hashing every: 1 base
929s Histogram detail is: 0
929s Hashing function is: 3
929s Collision profiling is: disabled
929s Repeats are: unmasked
929s Mergefilter is at: 100
929s Random seed: 1710370325 (automatic)
929s Bitscore output: on
929s Leave status records: no
929s Join neighbors is: off
929s Target memory is: 3.43 GB
929s Retain members is: true
929s Store repeatmap? yes
929s Reverse complement data is generated on the fly
929s Rifts allowed: 0
929s Fuzzy Extension: yes
929s Score by minimum pair: yes
929s Gapped anchors: no
929s Large sequence support is: enabled => seqpos is 8 bytes
929s Murasaki version 1.68.6 (LARGESEQ)
929s Loading NZ_GG705090.fna
929s Read 1374bp (1.34 KBp) in 0.001 seconds (2.1 MBp/s)
929s Done with forward strand (1374bp). Preparing reverse complement...
929s  <-> Reversing metdata.
929s Done.
929s Seq NZ_GG705090.fna loaded. 1.34 KB
929s Loading NZ_GG705090.gbk
929s Read 1374bp (1.34 KBp) in 0.000 seconds (3.9 MBp/s)
929s Done with forward strand (1374bp). Preparing reverse complement...
929s  <-> Reversing metdata.
929s Done.
929s Seq NZ_GG705090.gbk loaded. 1.34 KB
929s Sequence loading took: 0.001 seconds
929s Forward frequencies:  A:29.6215%  C:22.7802%  G:22.6346%  T:24.9636%
929s Global base frequencies:  A/T:54.5852%  C/G:45.4148%
929s Pat: 3 bases long with weight 2
929s    1 101 
929s Computing hash parameters...
929s Using 4 hashbits
929s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 91%........
929s Acceptable hash function found after 1000 cycles.
929s Best uses 2/2 bases and has 0 empties from 2 inputs.
929s Score: 0.96875 (cf. worst: -4.51562)
929s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
929s Total correlation penalty: 0
929s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
929s                                             10
929s                                             ==
929s w[ 0]>>29:                                 -.C
929s w[ 0]>>30:                                  A.-
929s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
929s Ecolist (optimistic): Expcted entries per list: 9
929s Ecolist (optimistic): Minimum chunks per list: 4
929s Would take minimum 256.000000 bytes to make perfect hash.
929s Hashing 5.37 KB of sequence requires: 
929s  ~ linear (in seq length) hashing cost of 9.39 KB
929s  ~ linear (in seq length) expected anchor cost of 128.81 KB
929s Initial hash table uses: 256 bytes (4 bits, 16 entries)
929s Expected memory usage (without anchors): 9.64 KB
929s Expected memory usage (with anchors): 138.46 KB
929s Hash parameters computed in 0.103 seconds
929s Creating storage structures: 16 entries in 256 bytes space.
929s Storage structures created in: 0.000 seconds
929s 
929s Hashing NZ_GG705090.fna forwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705090.fna backwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705090.gbk forwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Hashing NZ_GG705090.gbk backwards
929s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 90%.........
929s Initial hashing took: 0.002 seconds
929s Extracting anchors from hash-space.
929s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:05 2024
929s  6%. (T -0.003 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 31%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 68%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:05 2024
929s 93%.
929s Anchor extraction completed in: 0.003 seconds
929s Total anchors: 0
929s Anchor extraction + merge time: 0.003 seconds
929s Total processing time: 0.110 seconds
929s Writing anchors...
929s Total seeds used in anchors: 16
929s Hash performance:
929s  Keys used: 16 out of 16 possible (100.00%).
929s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
929s  Average pigeons per pigeon hole: 1
929s Writing 16 repeats...Output writing finished in: 0.001 seconds
929s Total time: 0.111 seconds
929s Murasaki finished!
929s PASSED MURASAKI
929s 
929s Testing Genepare on NZ_GG705090.fna
929s 375
929s PASSED GENEPARSE
929s 
929s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
930s Testing mbfa on NZ_GG705090.fna
930s PASSED mbfa
930s 
930s Test Murasaki on NZ_GG705091.fna
930s Verbosity level is: 0
930s Writing to: output/test
930s Pattern is: 101
930s Max usable hash bits: 27
930s Hit filter is: 0
930s Hash table type is: EcoHash
930s Hashing every: 1 base
930s Histogram detail is: 0
930s Hashing function is: 3
930s Collision profiling is: disabled
930s Repeats are: unmasked
930s Mergefilter is at: 100
930s Random seed: 1710370325 (automatic)
930s Bitscore output: on
930s Leave status records: no
930s Join neighbors is: off
930s Target memory is: 3.43 GB
930s Retain members is: true
930s Store repeatmap? yes
930s Reverse complement data is generated on the fly
930s Rifts allowed: 0
930s Fuzzy Extension: yes
930s Score by minimum pair: yes
930s Gapped anchors: no
930s Large sequence support is: enabled => seqpos is 8 bytes
930s Murasaki version 1.68.6 (LARGESEQ)
930s Loading NZ_GG705091.fna
930s Read 1318bp (1.29 KBp) in 0.001 seconds (2.2 MBp/s)
930s Done with forward strand (1318bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705091.fna loaded. 1.29 KB
930s Loading NZ_GG705091.gbk
930s Read 1318bp (1.29 KBp) in 0.000 seconds (4.2 MBp/s)
930s Done with forward strand (1318bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705091.gbk loaded. 1.29 KB
930s Sequence loading took: 0.001 seconds
930s Forward frequencies:  A:29.742%  C:23.8998%  G:22.1548%  T:24.2033%
930s Global base frequencies:  A/T:53.9454%  C/G:46.0546%
930s Pat: 3 bases long with weight 2
930s    1 101 
930s Computing hash parameters...
930s Using 4 hashbits
930s  0%......... (T -0.097 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 91%........
930s Acceptable hash function found after 1000 cycles.
930s Best uses 2/2 bases and has 0 empties from 2 inputs.
930s Score: 0.96875 (cf. worst: -4.51562)
930s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
930s Total correlation penalty: 0
930s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
930s                                             10
930s                                             ==
930s w[ 0]>>29:                                 -.C
930s w[ 0]>>30:                                  A.-
930s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
930s Ecolist (optimistic): Expcted entries per list: 9
930s Ecolist (optimistic): Minimum chunks per list: 4
930s Would take minimum 256.000000 bytes to make perfect hash.
930s Hashing 5.15 KB of sequence requires: 
930s  ~ linear (in seq length) hashing cost of 9.01 KB
930s  ~ linear (in seq length) expected anchor cost of 123.56 KB
930s Initial hash table uses: 256 bytes (4 bits, 16 entries)
930s Expected memory usage (without anchors): 9.26 KB
930s Expected memory usage (with anchors): 132.82 KB
930s Hash parameters computed in 0.104 seconds
930s Creating storage structures: 16 entries in 256 bytes space.
930s Storage structures created in: 0.000 seconds
930s 
930s Hashing NZ_GG705091.fna forwards
930s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705091.fna backwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705091.gbk forwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705091.gbk backwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Initial hashing took: 0.003 seconds
930s Extracting anchors from hash-space.
930s  (T -0.004 seconds) ETA: Wed Mar 13 22:52:06 2024
930s  6%. (T -0.003 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 31%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 68%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 93%.
930s Anchor extraction completed in: 0.003 seconds
930s Total anchors: 0
930s Anchor extraction + merge time: 0.003 seconds
930s Total processing time: 0.111 seconds
930s Writing anchors...
930s Total seeds used in anchors: 16
930s Hash performance:
930s  Keys used: 16 out of 16 possible (100.00%).
930s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
930s  Average pigeons per pigeon hole: 1
930s Writing 16 repeats...Output writing finished in: 0.001 seconds
930s Total time: 0.113 seconds
930s Murasaki finished!
930s PASSED MURASAKI
930s 
930s Testing Genepare on NZ_GG705091.fna
930s 319
930s PASSED GENEPARSE
930s 
930s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
930s Testing mbfa on NZ_GG705091.fna
930s PASSED mbfa
930s 
930s Test Murasaki on NZ_GG705092.fna
930s Verbosity level is: 0
930s Writing to: output/test
930s Pattern is: 101
930s Max usable hash bits: 27
930s Hit filter is: 0
930s Hash table type is: EcoHash
930s Hashing every: 1 base
930s Histogram detail is: 0
930s Hashing function is: 3
930s Collision profiling is: disabled
930s Repeats are: unmasked
930s Mergefilter is at: 100
930s Random seed: 1710370326 (automatic)
930s Bitscore output: on
930s Leave status records: no
930s Join neighbors is: off
930s Target memory is: 3.43 GB
930s Retain members is: true
930s Store repeatmap? yes
930s Reverse complement data is generated on the fly
930s Rifts allowed: 0
930s Fuzzy Extension: yes
930s Score by minimum pair: yes
930s Gapped anchors: no
930s Large sequence support is: enabled => seqpos is 8 bytes
930s Murasaki version 1.68.6 (LARGESEQ)
930s Loading NZ_GG705092.fna
930s Read 1283bp (1.25 KBp) in 0.000 seconds (2.5 MBp/s)
930s Done with forward strand (1283bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705092.fna loaded. 1.25 KB
930s Loading NZ_GG705092.gbk
930s Read 1283bp (1.25 KBp) in 0.000 seconds (3.9 MBp/s)
930s Done with forward strand (1283bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705092.gbk loaded. 1.25 KB
930s Sequence loading took: 0.001 seconds
930s Forward frequencies:  A:23.6945%  C:21.0444%  G:25.3313%  T:29.9299%
930s Global base frequencies:  A/T:53.6243%  C/G:46.3757%
930s Pat: 3 bases long with weight 2
930s    1 101 
930s Computing hash parameters...
930s Using 4 hashbits
930s  0%......... (T -0.097 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 91%........
930s Acceptable hash function found after 1000 cycles.
930s Best uses 2/2 bases and has 0 empties from 2 inputs.
930s Score: 0.96875 (cf. worst: -4.51562)
930s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
930s Total correlation penalty: 0
930s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
930s                                             10
930s                                             ==
930s w[ 0]>>29:                                 -.C
930s w[ 0]>>30:                                  A.-
930s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
930s Ecolist (optimistic): Expcted entries per list: 9
930s Ecolist (optimistic): Minimum chunks per list: 4
930s Would take minimum 256.000000 bytes to make perfect hash.
930s Hashing 5.01 KB of sequence requires: 
930s  ~ linear (in seq length) hashing cost of 8.76 KB
930s  ~ linear (in seq length) expected anchor cost of 120.28 KB
930s Initial hash table uses: 256 bytes (4 bits, 16 entries)
930s Expected memory usage (without anchors): 9.01 KB
930s Expected memory usage (with anchors): 129.29 KB
930s Hash parameters computed in 0.102 seconds
930s Creating storage structures: 16 entries in 256 bytes space.
930s Storage structures created in: 0.000 seconds
930s 
930s Hashing NZ_GG705092.fna forwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705092.fna backwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705092.gbk forwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705092.gbk backwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Initial hashing took: 0.002 seconds
930s Extracting anchors from hash-space.
930s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:06 2024
930s  6%. (T -0.003 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 31%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 68%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 93%.
930s Anchor extraction completed in: 0.003 seconds
930s Total anchors: 0
930s Anchor extraction + merge time: 0.003 seconds
930s Total processing time: 0.108 seconds
930s Writing anchors...
930s Total seeds used in anchors: 16
930s Hash performance:
930s  Keys used: 16 out of 16 possible (100.00%).
930s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
930s  Average pigeons per pigeon hole: 1
930s Writing 16 repeats...Output writing finished in: 0.001 seconds
930s Total time: 0.109 seconds
930s Murasaki finished!
930s PASSED MURASAKI
930s 
930s Testing Genepare on NZ_GG705092.fna
930s 284
930s PASSED GENEPARSE
930s 
930s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
930s Testing mbfa on NZ_GG705092.fna
930s PASSED mbfa
930s 
930s Test Murasaki on NZ_GG705093.fna
930s Verbosity level is: 0
930s Writing to: output/test
930s Pattern is: 101
930s Max usable hash bits: 27
930s Hit filter is: 0
930s Hash table type is: EcoHash
930s Hashing every: 1 base
930s Histogram detail is: 0
930s Hashing function is: 3
930s Collision profiling is: disabled
930s Repeats are: unmasked
930s Mergefilter is at: 100
930s Random seed: 1710370326 (automatic)
930s Bitscore output: on
930s Leave status records: no
930s Join neighbors is: off
930s Target memory is: 3.43 GB
930s Retain members is: true
930s Store repeatmap? yes
930s Reverse complement data is generated on the fly
930s Rifts allowed: 0
930s Fuzzy Extension: yes
930s Score by minimum pair: yes
930s Gapped anchors: no
930s Large sequence support is: enabled => seqpos is 8 bytes
930s Murasaki version 1.68.6 (LARGESEQ)
930s Loading NZ_GG705093.fna
930s Read 1180bp (1.15 KBp) in 0.001 seconds (2.1 MBp/s)
930s Done with forward strand (1180bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705093.fna loaded. 1.15 KB
930s Loading NZ_GG705093.gbk
930s Read 1180bp (1.15 KBp) in 0.000 seconds (3.7 MBp/s)
930s Done with forward strand (1180bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705093.gbk loaded. 1.15 KB
930s Sequence loading took: 0.001 seconds
930s Forward frequencies:  A:31.9492%  C:16.1017%  G:19.8305%  T:32.1186%
930s Global base frequencies:  A/T:64.0678%  C/G:35.9322%
930s Pat: 3 bases long with weight 2
930s    1 101 
930s Computing hash parameters...
930s Using 4 hashbits
930s  0%......... (T -0.098 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.085 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.074 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 91%........
930s Acceptable hash function found after 1000 cycles.
930s Best uses 2/2 bases and has 0 empties from 2 inputs.
930s Score: 0.96875 (cf. worst: -4.51562)
930s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
930s Total correlation penalty: 0
930s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
930s                                             10
930s                                             ==
930s w[ 0]>>29:                                 -.C
930s w[ 0]>>30:                                  A.-
930s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
930s Ecolist (optimistic): Expcted entries per list: 9
930s Ecolist (optimistic): Minimum chunks per list: 4
930s Would take minimum 256.000000 bytes to make perfect hash.
930s Hashing 4.61 KB of sequence requires: 
930s  ~ linear (in seq length) hashing cost of 8.07 KB
930s  ~ linear (in seq length) expected anchor cost of 110.62 KB
930s Initial hash table uses: 256 bytes (4 bits, 16 entries)
930s Expected memory usage (without anchors): 8.32 KB
930s Expected memory usage (with anchors): 118.94 KB
930s Hash parameters computed in 0.102 seconds
930s Creating storage structures: 16 entries in 256 bytes space.
930s Storage structures created in: 0.000 seconds
930s 
930s Hashing NZ_GG705093.fna forwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705093.fna backwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705093.gbk forwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Hashing NZ_GG705093.gbk backwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%.........
930s Initial hashing took: 0.002 seconds
930s Extracting anchors from hash-space.
930s  (T -0.004 seconds) ETA: Wed Mar 13 22:52:06 2024
930s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 93%.
930s Anchor extraction completed in: 0.003 seconds
930s Total anchors: 0
930s Anchor extraction + merge time: 0.003 seconds
930s Total processing time: 0.109 seconds
930s Writing anchors...
930s Total seeds used in anchors: 16
930s Hash performance:
930s  Keys used: 16 out of 16 possible (100.00%).
930s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
930s  Average pigeons per pigeon hole: 1
930s Writing 16 repeats...Output writing finished in: 0.001 seconds
930s Total time: 0.110 seconds
930s Murasaki finished!
930s PASSED MURASAKI
930s 
930s Testing Genepare on NZ_GG705093.fna
930s 181
930s PASSED GENEPARSE
930s 
930s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
930s Testing mbfa on NZ_GG705093.fna
930s PASSED mbfa
930s 
930s Test Murasaki on NZ_GG705094.fna
930s Verbosity level is: 0
930s Writing to: output/test
930s Pattern is: 101
930s Max usable hash bits: 27
930s Hit filter is: 0
930s Hash table type is: EcoHash
930s Hashing every: 1 base
930s Histogram detail is: 0
930s Hashing function is: 3
930s Collision profiling is: disabled
930s Repeats are: unmasked
930s Mergefilter is at: 100
930s Random seed: 1710370326 (automatic)
930s Bitscore output: on
930s Leave status records: no
930s Join neighbors is: off
930s Target memory is: 3.43 GB
930s Retain members is: true
930s Store repeatmap? yes
930s Reverse complement data is generated on the fly
930s Rifts allowed: 0
930s Fuzzy Extension: yes
930s Score by minimum pair: yes
930s Gapped anchors: no
930s Large sequence support is: enabled => seqpos is 8 bytes
930s Murasaki version 1.68.6 (LARGESEQ)
930s Loading NZ_GG705094.fna
930s Read 1153bp (1.13 KBp) in 0.001 seconds (1.9 MBp/s)
930s Done with forward strand (1153bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705094.fna loaded. 1.13 KB
930s Loading NZ_GG705094.gbk
930s Read 1153bp (1.13 KBp) in 0.000 seconds (3.2 MBp/s)
930s Done with forward strand (1153bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705094.gbk loaded. 1.13 KB
930s Sequence loading took: 0.001 seconds
930s Forward frequencies:  A:27.8404%  C:21.4224%  G:19.7745%  T:30.9627%
930s Global base frequencies:  A/T:58.8031%  C/G:41.1969%
930s Pat: 3 bases long with weight 2
930s    1 101 
930s Computing hash parameters...
930s Using 4 hashbits
930s  0%......... (T -0.099 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.085 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.074 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 91%........
930s Acceptable hash function found after 1000 cycles.
930s Best uses 2/2 bases and has 0 empties from 2 inputs.
930s Score: 0.96875 (cf. worst: -4.51562)
930s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
930s Total correlation penalty: 0
930s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
930s                                             10
930s                                             ==
930s w[ 0]>>29:                                 -.C
930s w[ 0]>>30:                                  A.-
930s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
930s Ecolist (optimistic): Expcted entries per list: 9
930s Ecolist (optimistic): Minimum chunks per list: 4
930s Would take minimum 256.000000 bytes to make perfect hash.
930s Hashing 4.50 KB of sequence requires: 
930s  ~ linear (in seq length) hashing cost of 7.88 KB
930s  ~ linear (in seq length) expected anchor cost of 108.09 KB
930s Initial hash table uses: 256 bytes (4 bits, 16 entries)
930s Expected memory usage (without anchors): 8.12 KB
930s Expected memory usage (with anchors): 116.22 KB
930s Hash parameters computed in 0.102 seconds
930s Creating storage structures: 16 entries in 256 bytes space.
930s Storage structures created in: 0.000 seconds
930s 
930s Hashing NZ_GG705094.fna forwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%........
930s Hashing NZ_GG705094.fna backwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%........
930s Hashing NZ_GG705094.gbk forwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%........
930s Hashing NZ_GG705094.gbk backwards
930s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 90%........
930s Initial hashing took: 0.002 seconds
930s Extracting anchors from hash-space.
930s  (T -0.004 seconds) ETA: Wed Mar 13 22:52:06 2024
930s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 31%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 68%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 93%.
930s Anchor extraction completed in: 0.003 seconds
930s Total anchors: 0
930s Anchor extraction + merge time: 0.003 seconds
930s Total processing time: 0.109 seconds
930s Writing anchors...
930s Total seeds used in anchors: 16
930s Hash performance:
930s  Keys used: 16 out of 16 possible (100.00%).
930s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
930s  Average pigeons per pigeon hole: 1
930s Writing 16 repeats...Output writing finished in: 0.001 seconds
930s Total time: 0.110 seconds
930s Murasaki finished!
930s PASSED MURASAKI
930s 
930s Testing Genepare on NZ_GG705094.fna
930s 154
930s PASSED GENEPARSE
930s 
930s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
930s Testing mbfa on NZ_GG705094.fna
930s PASSED mbfa
930s 
930s Test Murasaki on NZ_GG705095.fna
930s Verbosity level is: 0
930s Writing to: output/test
930s Pattern is: 101
930s Max usable hash bits: 27
930s Hit filter is: 0
930s Hash table type is: EcoHash
930s Hashing every: 1 base
930s Histogram detail is: 0
930s Hashing function is: 3
930s Collision profiling is: disabled
930s Repeats are: unmasked
930s Mergefilter is at: 100
930s Random seed: 1710370326 (automatic)
930s Bitscore output: on
930s Leave status records: no
930s Join neighbors is: off
930s Target memory is: 3.43 GB
930s Retain members is: true
930s Store repeatmap? yes
930s Reverse complement data is generated on the fly
930s Rifts allowed: 0
930s Fuzzy Extension: yes
930s Score by minimum pair: yes
930s Gapped anchors: no
930s Large sequence support is: enabled => seqpos is 8 bytes
930s Murasaki version 1.68.6 (LARGESEQ)
930s Loading NZ_GG705095.fna
930s Read 1093bp (1.07 KBp) in 0.001 seconds (1.6 MBp/s)
930s Done with forward strand (1093bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705095.fna loaded. 1.07 KB
930s Loading NZ_GG705095.gbk
930s Read 1093bp (1.07 KBp) in 0.000 seconds (2.7 MBp/s)
930s Done with forward strand (1093bp). Preparing reverse complement...
930s  <-> Reversing metdata.
930s Done.
930s Seq NZ_GG705095.gbk loaded. 1.07 KB
930s Sequence loading took: 0.001 seconds
930s Forward frequencies:  A:33.1199%  C:16.8344%  G:21.043%  T:29.0027%
930s Global base frequencies:  A/T:62.1226%  C/G:37.8774%
930s Pat: 3 bases long with weight 2
930s    1 101 
930s Computing hash parameters...
930s Using 4 hashbits
930s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:06 2024
930s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 91%........
931s Acceptable hash function found after 1000 cycles.
931s Best uses 2/2 bases and has 0 empties from 2 inputs.
931s Score: 0.96875 (cf. worst: -4.51562)
931s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
931s Total correlation penalty: 0
931s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
931s                                             10
931s                                             ==
931s w[ 0]>>29:                                 -.C
931s w[ 0]>>30:                                  A.-
931s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
931s Ecolist (optimistic): Expcted entries per list: 9
931s Ecolist (optimistic): Minimum chunks per list: 4
931s Would take minimum 256.000000 bytes to make perfect hash.
931s Hashing 4.27 KB of sequence requires: 
931s  ~ linear (in seq length) hashing cost of 7.46 KB
931s  ~ linear (in seq length) expected anchor cost of 102.47 KB
931s Initial hash table uses: 256 bytes (4 bits, 16 entries)
931s Expected memory usage (without anchors): 7.71 KB
931s Expected memory usage (with anchors): 110.18 KB
931s Hash parameters computed in 0.102 seconds
931s Creating storage structures: 16 entries in 256 bytes space.
931s Storage structures created in: 0.000 seconds
931s 
931s Hashing NZ_GG705095.fna forwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 90%.........
931s Hashing NZ_GG705095.fna backwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 90%.........
931s Hashing NZ_GG705095.gbk forwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 90%.........
931s Hashing NZ_GG705095.gbk backwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 90%.........
931s Initial hashing took: 0.002 seconds
931s Extracting anchors from hash-space.
931s  (T -0.004 seconds) ETA: Wed Mar 13 22:52:06 2024
931s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:06 2024
931s 93%.
931s Anchor extraction completed in: 0.003 seconds
931s Total anchors: 0
931s Anchor extraction + merge time: 0.003 seconds
931s Total processing time: 0.109 seconds
931s Writing anchors...
931s Total seeds used in anchors: 16
931s Hash performance:
931s  Keys used: 16 out of 16 possible (100.00%).
931s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
931s  Average pigeons per pigeon hole: 1
931s Writing 16 repeats...Output writing finished in: 0.001 seconds
931s Total time: 0.110 seconds
931s Murasaki finished!
931s PASSED MURASAKI
931s 
931s Testing Genepare on NZ_GG705095.fna
931s 94
931s PASSED GENEPARSE
931s 
931s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
931s Testing mbfa on NZ_GG705095.fna
931s PASSED mbfa
931s 
931s Test Murasaki on NZ_GG705096.fna
931s Verbosity level is: 0
931s Writing to: output/test
931s Pattern is: 101
931s Max usable hash bits: 27
931s Hit filter is: 0
931s Hash table type is: EcoHash
931s Hashing every: 1 base
931s Histogram detail is: 0
931s Hashing function is: 3
931s Collision profiling is: disabled
931s Repeats are: unmasked
931s Mergefilter is at: 100
931s Random seed: 1710370327 (automatic)
931s Bitscore output: on
931s Leave status records: no
931s Join neighbors is: off
931s Target memory is: 3.43 GB
931s Retain members is: true
931s Store repeatmap? yes
931s Reverse complement data is generated on the fly
931s Rifts allowed: 0
931s Fuzzy Extension: yes
931s Score by minimum pair: yes
931s Gapped anchors: no
931s Large sequence support is: enabled => seqpos is 8 bytes
931s Murasaki version 1.68.6 (LARGESEQ)
931s Loading NZ_GG705096.fna
931s Read 1046bp (1.02 KBp) in 0.001 seconds (1.9 MBp/s)
931s Done with forward strand (1046bp). Preparing reverse complement...
931s  <-> Reversing metdata.
931s Done.
931s Seq NZ_GG705096.fna loaded. 1.02 KB
931s Loading NZ_GG705096.gbk
931s Read 1046bp (1.02 KBp) in 0.000 seconds (3.0 MBp/s)
931s Done with forward strand (1046bp). Preparing reverse complement...
931s  <-> Reversing metdata.
931s Done.
931s Seq NZ_GG705096.gbk loaded. 1.02 KB
931s Sequence loading took: 0.001 seconds
931s Forward frequencies:  A:30.8795%  C:24.4742%  G:20.9369%  T:23.7094%
931s Global base frequencies:  A/T:54.5889%  C/G:45.4111%
931s Pat: 3 bases long with weight 2
931s    1 101 
931s Computing hash parameters...
931s Using 4 hashbits
931s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 91%........
931s Acceptable hash function found after 1000 cycles.
931s Best uses 2/2 bases and has 0 empties from 2 inputs.
931s Score: 0.96875 (cf. worst: -4.51562)
931s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
931s Total correlation penalty: 0
931s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
931s                                             10
931s                                             ==
931s w[ 0]>>29:                                 -.C
931s w[ 0]>>30:                                  A.-
931s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
931s Ecolist (optimistic): Expcted entries per list: 9
931s Ecolist (optimistic): Minimum chunks per list: 4
931s Would take minimum 256.000000 bytes to make perfect hash.
931s Hashing 4.09 KB of sequence requires: 
931s  ~ linear (in seq length) hashing cost of 7.15 KB
931s  ~ linear (in seq length) expected anchor cost of 98.06 KB
931s Initial hash table uses: 256 bytes (4 bits, 16 entries)
931s Expected memory usage (without anchors): 7.40 KB
931s Expected memory usage (with anchors): 105.46 KB
931s Hash parameters computed in 0.101 seconds
931s Creating storage structures: 16 entries in 256 bytes space.
931s Storage structures created in: 0.000 seconds
931s 
931s Hashing NZ_GG705096.fna forwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%........
931s Hashing NZ_GG705096.fna backwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%........
931s Hashing NZ_GG705096.gbk forwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%........
931s Hashing NZ_GG705096.gbk backwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%........
931s Initial hashing took: 0.002 seconds
931s Extracting anchors from hash-space.
931s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:07 2024
931s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 93%.
931s Anchor extraction completed in: 0.002 seconds
931s Total anchors: 0
931s Anchor extraction + merge time: 0.002 seconds
931s Total processing time: 0.107 seconds
931s Writing anchors...
931s Total seeds used in anchors: 16
931s Hash performance:
931s  Keys used: 16 out of 16 possible (100.00%).
931s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
931s  Average pigeons per pigeon hole: 1
931s Writing 16 repeats...Output writing finished in: 0.001 seconds
931s Total time: 0.108 seconds
931s Murasaki finished!
931s PASSED MURASAKI
931s 
931s Testing Genepare on NZ_GG705096.fna
931s 47
931s PASSED GENEPARSE
931s 
931s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
931s Testing mbfa on NZ_GG705096.fna
931s PASSED mbfa
931s 
931s Test Murasaki on NZ_GG705097.fna
931s Verbosity level is: 0
931s Writing to: output/test
931s Pattern is: 101
931s Max usable hash bits: 27
931s Hit filter is: 0
931s Hash table type is: EcoHash
931s Hashing every: 1 base
931s Histogram detail is: 0
931s Hashing function is: 3
931s Collision profiling is: disabled
931s Repeats are: unmasked
931s Mergefilter is at: 100
931s Random seed: 1710370327 (automatic)
931s Bitscore output: on
931s Leave status records: no
931s Join neighbors is: off
931s Target memory is: 3.43 GB
931s Retain members is: true
931s Store repeatmap? yes
931s Reverse complement data is generated on the fly
931s Rifts allowed: 0
931s Fuzzy Extension: yes
931s Score by minimum pair: yes
931s Gapped anchors: no
931s Large sequence support is: enabled => seqpos is 8 bytes
931s Murasaki version 1.68.6 (LARGESEQ)
931s Loading NZ_GG705097.fna
931s Read 976bp (976 bytesp) in 0.001 seconds (1.7 MBp/s)
931s Done with forward strand (976bp). Preparing reverse complement...
931s  <-> Reversing metdata.
931s Done.
931s Seq NZ_GG705097.fna loaded. 976 bytes
931s Loading NZ_GG705097.gbk
931s Read 976bp (976 bytesp) in 0.000 seconds (2.7 MBp/s)
931s Done with forward strand (976bp). Preparing reverse complement...
931s  <-> Reversing metdata.
931s Done.
931s Seq NZ_GG705097.gbk loaded. 976 bytes
931s Sequence loading took: 0.001 seconds
931s Forward frequencies:  A:33.5041%  C:17.5205%  G:17.8279%  T:31.1475%
931s Global base frequencies:  A/T:64.6516%  C/G:35.3484%
931s Pat: 3 bases long with weight 2
931s    1 101 
931s Computing hash parameters...
931s Using 4 hashbits
931s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.081 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.071 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 91%........
931s Acceptable hash function found after 1000 cycles.
931s Best uses 2/2 bases and has 0 empties from 2 inputs.
931s Score: 0.96875 (cf. worst: -4.51562)
931s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
931s Total correlation penalty: 0
931s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
931s                                             10
931s                                             ==
931s w[ 0]>>29:                                 -.C
931s w[ 0]>>30:                                  A.-
931s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
931s Ecolist (optimistic): Expcted entries per list: 8
931s Ecolist (optimistic): Minimum chunks per list: 4
931s Would take minimum 256.000000 bytes to make perfect hash.
931s Hashing 3.81 KB of sequence requires: 
931s  ~ linear (in seq length) hashing cost of 6.20 KB
931s  ~ linear (in seq length) expected anchor cost of 91.50 KB
931s Initial hash table uses: 256 bytes (4 bits, 16 entries)
931s Expected memory usage (without anchors): 6.45 KB
931s Expected memory usage (with anchors): 97.95 KB
931s Hash parameters computed in 0.102 seconds
931s Creating storage structures: 16 entries in 256 bytes space.
931s Storage structures created in: 0.000 seconds
931s 
931s Hashing NZ_GG705097.fna forwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%.........
931s Hashing NZ_GG705097.fna backwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%.........
931s Hashing NZ_GG705097.gbk forwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%.........
931s Hashing NZ_GG705097.gbk backwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%.........
931s Initial hashing took: 0.003 seconds
931s Extracting anchors from hash-space.
931s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:07 2024
931s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 93%.
931s Anchor extraction completed in: 0.002 seconds
931s Total anchors: 0
931s Anchor extraction + merge time: 0.002 seconds
931s Total processing time: 0.108 seconds
931s Writing anchors...
931s Total seeds used in anchors: 16
931s Hash performance:
931s  Keys used: 16 out of 16 possible (100.00%).
931s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
931s  Average pigeons per pigeon hole: 1
931s Writing 16 repeats...Output writing finished in: 0.001 seconds
931s Total time: 0.109 seconds
931s Murasaki finished!
931s PASSED MURASAKI
931s 
931s Testing Genepare on NZ_GG705097.fna
931s 18446744073709551593
931s PASSED GENEPARSE
931s 
931s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
931s Testing mbfa on NZ_GG705097.fna
931s PASSED mbfa
931s 
931s Test Murasaki on NZ_GG705098.fna
931s Verbosity level is: 0
931s Writing to: output/test
931s Pattern is: 101
931s Max usable hash bits: 27
931s Hit filter is: 0
931s Hash table type is: EcoHash
931s Hashing every: 1 base
931s Histogram detail is: 0
931s Hashing function is: 3
931s Collision profiling is: disabled
931s Repeats are: unmasked
931s Mergefilter is at: 100
931s Random seed: 1710370327 (automatic)
931s Bitscore output: on
931s Leave status records: no
931s Join neighbors is: off
931s Target memory is: 3.43 GB
931s Retain members is: true
931s Store repeatmap? yes
931s Reverse complement data is generated on the fly
931s Rifts allowed: 0
931s Fuzzy Extension: yes
931s Score by minimum pair: yes
931s Gapped anchors: no
931s Large sequence support is: enabled => seqpos is 8 bytes
931s Murasaki version 1.68.6 (LARGESEQ)
931s Loading NZ_GG705098.fna
931s Read 959bp (959 bytesp) in 0.001 seconds (1.2 MBp/s)
931s Done with forward strand (959bp). Preparing reverse complement...
931s  <-> Reversing metdata.
931s Done.
931s Seq NZ_GG705098.fna loaded. 959 bytes
931s Loading NZ_GG705098.gbk
931s Read 959bp (959 bytesp) in 0.000 seconds (3.0 MBp/s)
931s Done with forward strand (959bp). Preparing reverse complement...
931s  <-> Reversing metdata.
931s Done.
931s Seq NZ_GG705098.gbk loaded. 959 bytes
931s Sequence loading took: 0.001 seconds
931s Forward frequencies:  A:33.0553%  C:20.6465%  G:17.414%  T:28.8843%
931s Global base frequencies:  A/T:61.9395%  C/G:38.0605%
931s Pat: 3 bases long with weight 2
931s    1 101 
931s Computing hash parameters...
931s Using 4 hashbits
931s  0%......... (T -0.105 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.091 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.079 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.068 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.056 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.045 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.033 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.022 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.010 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 91%........
931s Acceptable hash function found after 1000 cycles.
931s Best uses 2/2 bases and has 0 empties from 2 inputs.
931s Score: 0.96875 (cf. worst: -4.51562)
931s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
931s Total correlation penalty: 0
931s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
931s                                             10
931s                                             ==
931s w[ 0]>>29:                                 -.C
931s w[ 0]>>30:                                  A.-
931s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
931s Ecolist (optimistic): Expcted entries per list: 8
931s Ecolist (optimistic): Minimum chunks per list: 4
931s Would take minimum 256.000000 bytes to make perfect hash.
931s Hashing 3.75 KB of sequence requires: 
931s  ~ linear (in seq length) hashing cost of 6.08 KB
931s  ~ linear (in seq length) expected anchor cost of 89.91 KB
931s Initial hash table uses: 256 bytes (4 bits, 16 entries)
931s Expected memory usage (without anchors): 6.33 KB
931s Expected memory usage (with anchors): 96.24 KB
931s Hash parameters computed in 0.111 seconds
931s Creating storage structures: 16 entries in 256 bytes space.
931s Storage structures created in: 0.000 seconds
931s 
931s Hashing NZ_GG705098.fna forwards
931s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%.........
931s Hashing NZ_GG705098.fna backwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%.........
931s Hashing NZ_GG705098.gbk forwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%.........
931s Hashing NZ_GG705098.gbk backwards
931s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 90%.........
931s Initial hashing took: 0.002 seconds
931s Extracting anchors from hash-space.
931s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:07 2024
931s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:07 2024
931s 93%.
931s Anchor extraction completed in: 0.002 seconds
931s Total anchors: 0
931s Anchor extraction + merge time: 0.002 seconds
931s Total processing time: 0.117 seconds
931s Writing anchors...
931s Total seeds used in anchors: 16
931s Hash performance:
931s  Keys used: 16 out of 16 possible (100.00%).
931s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
931s  Average pigeons per pigeon hole: 1
931s Writing 16 repeats...Output writing finished in: 0.001 seconds
931s Total time: 0.118 seconds
931s Murasaki finished!
931s PASSED MURASAKI
931s 
931s Testing Genepare on NZ_GG705098.fna
931s 18446744073709551576
931s PASSED GENEPARSE
931s 
931s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
931s Testing mbfa on NZ_GG705098.fna
931s PASSED mbfa
931s 
931s Test Murasaki on NZ_GG705099.fna
931s Verbosity level is: 0
931s Writing to: output/test
931s Pattern is: 101
931s Max usable hash bits: 27
931s Hit filter is: 0
931s Hash table type is: EcoHash
931s Hashing every: 1 base
931s Histogram detail is: 0
931s Hashing function is: 3
931s Collision profiling is: disabled
931s Repeats are: unmasked
931s Mergefilter is at: 100
931s Random seed: 1710370327 (automatic)
931s Bitscore output: on
931s Leave status records: no
931s Join neighbors is: off
931s Target memory is: 3.43 GB
931s Retain members is: true
931s Store repeatmap? yes
931s Reverse complement data is generated on the fly
931s Rifts allowed: 0
931s Fuzzy Extension: yes
931s Score by minimum pair: yes
931s Gapped anchors: no
931s Large sequence support is: enabled => seqpos is 8 bytes
931s Murasaki version 1.68.6 (LARGESEQ)
931s Loading NZ_GG705099.fna
931s Read 927bp (927 bytesp) in 0.001 seconds (1.7 MBp/s)
931s Done with forward strand (927bp). Preparing reverse complement...
931s  <-> Reversing metdata.
931s Done.
931s Seq NZ_GG705099.fna loaded. 927 bytes
931s Loading NZ_GG705099.gbk
931s Read 927bp (927 bytesp) in 0.000 seconds (3.1 MBp/s)
931s Done with forward strand (927bp). Preparing reverse complement...
931s  <-> Reversing metdata.
931s Done.
931s Seq NZ_GG705099.gbk loaded. 927 bytes
931s Sequence loading took: 0.001 seconds
931s Forward frequencies:  A:32.2546%  C:16.5049%  G:12.6214%  T:38.6192%
931s Global base frequencies:  A/T:70.8738%  C/G:29.1262%
931s Pat: 3 bases long with weight 2
931s    1 101 
931s Computing hash parameters...
931s Using 4 hashbits
931s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:08 2024
931s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:08 2024
931s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:08 2024
931s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 91%........
932s Acceptable hash function found after 1000 cycles.
932s Best uses 2/2 bases and has 0 empties from 2 inputs.
932s Score: 0.96875 (cf. worst: -4.51562)
932s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
932s Total correlation penalty: 0
932s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
932s                                             10
932s                                             ==
932s w[ 0]>>29:                                 -.C
932s w[ 0]>>30:                                  A.-
932s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
932s Ecolist (optimistic): Expcted entries per list: 8
932s Ecolist (optimistic): Minimum chunks per list: 4
932s Would take minimum 256.000000 bytes to make perfect hash.
932s Hashing 3.62 KB of sequence requires: 
932s  ~ linear (in seq length) hashing cost of 5.88 KB
932s  ~ linear (in seq length) expected anchor cost of 86.91 KB
932s Initial hash table uses: 256 bytes (4 bits, 16 entries)
932s Expected memory usage (without anchors): 6.13 KB
932s Expected memory usage (with anchors): 93.03 KB
932s Hash parameters computed in 0.104 seconds
932s Creating storage structures: 16 entries in 256 bytes space.
932s Storage structures created in: 0.000 seconds
932s 
932s Hashing NZ_GG705099.fna forwards
932s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705099.fna backwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705099.gbk forwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705099.gbk backwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Initial hashing took: 0.004 seconds
932s Extracting anchors from hash-space.
932s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 93%.
932s Anchor extraction completed in: 0.002 seconds
932s Total anchors: 0
932s Anchor extraction + merge time: 0.002 seconds
932s Total processing time: 0.111 seconds
932s Writing anchors...
932s Total seeds used in anchors: 16
932s Hash performance:
932s  Keys used: 16 out of 16 possible (100.00%).
932s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
932s  Average pigeons per pigeon hole: 1
932s Writing 16 repeats...Output writing finished in: 0.001 seconds
932s Total time: 0.112 seconds
932s Murasaki finished!
932s PASSED MURASAKI
932s 
932s Testing Genepare on NZ_GG705099.fna
932s 18446744073709551544
932s PASSED GENEPARSE
932s 
932s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
932s Testing mbfa on NZ_GG705099.fna
932s PASSED mbfa
932s 
932s Test Murasaki on NZ_GG705100.fna
932s Verbosity level is: 0
932s Writing to: output/test
932s Pattern is: 101
932s Max usable hash bits: 27
932s Hit filter is: 0
932s Hash table type is: EcoHash
932s Hashing every: 1 base
932s Histogram detail is: 0
932s Hashing function is: 3
932s Collision profiling is: disabled
932s Repeats are: unmasked
932s Mergefilter is at: 100
932s Random seed: 1710370328 (automatic)
932s Bitscore output: on
932s Leave status records: no
932s Join neighbors is: off
932s Target memory is: 3.43 GB
932s Retain members is: true
932s Store repeatmap? yes
932s Reverse complement data is generated on the fly
932s Rifts allowed: 0
932s Fuzzy Extension: yes
932s Score by minimum pair: yes
932s Gapped anchors: no
932s Large sequence support is: enabled => seqpos is 8 bytes
932s Murasaki version 1.68.6 (LARGESEQ)
932s Loading NZ_GG705100.fna
932s Read 885bp (885 bytesp) in 0.001 seconds (1.7 MBp/s)
932s Done with forward strand (885bp). Preparing reverse complement...
932s  <-> Reversing metdata.
932s Done.
932s Seq NZ_GG705100.fna loaded. 885 bytes
932s Loading NZ_GG705100.gbk
932s Read 885bp (885 bytesp) in 0.000 seconds (3.3 MBp/s)
932s Done with forward strand (885bp). Preparing reverse complement...
932s  <-> Reversing metdata.
932s Done.
932s Seq NZ_GG705100.gbk loaded. 885 bytes
932s Sequence loading took: 0.001 seconds
932s Forward frequencies:  A:26.6667%  C:18.9831%  G:15.5932%  T:38.7571%
932s Global base frequencies:  A/T:65.4237%  C/G:34.5763%
932s Pat: 3 bases long with weight 2
932s    1 101 
932s Computing hash parameters...
932s Using 4 hashbits
932s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.074 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.063 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.053 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.042 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 91%........
932s Acceptable hash function found after 1000 cycles.
932s Best uses 2/2 bases and has 0 empties from 2 inputs.
932s Score: 0.96875 (cf. worst: -4.51562)
932s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
932s Total correlation penalty: 0
932s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
932s                                             10
932s                                             ==
932s w[ 0]>>29:                                 -.C
932s w[ 0]>>30:                                  A.-
932s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
932s Ecolist (optimistic): Expcted entries per list: 8
932s Ecolist (optimistic): Minimum chunks per list: 4
932s Would take minimum 256.000000 bytes to make perfect hash.
932s Hashing 3.46 KB of sequence requires: 
932s  ~ linear (in seq length) hashing cost of 5.61 KB
932s  ~ linear (in seq length) expected anchor cost of 82.97 KB
932s Initial hash table uses: 256 bytes (4 bits, 16 entries)
932s Expected memory usage (without anchors): 5.86 KB
932s Expected memory usage (with anchors): 88.83 KB
932s Hash parameters computed in 0.105 seconds
932s Creating storage structures: 16 entries in 256 bytes space.
932s Storage structures created in: 0.000 seconds
932s 
932s Hashing NZ_GG705100.fna forwards
932s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705100.fna backwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705100.gbk forwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705100.gbk backwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Initial hashing took: 0.003 seconds
932s Extracting anchors from hash-space.
932s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 93%.
932s Anchor extraction completed in: 0.002 seconds
932s Total anchors: 0
932s Anchor extraction + merge time: 0.002 seconds
932s Total processing time: 0.111 seconds
932s Writing anchors...
932s Total seeds used in anchors: 16
932s Hash performance:
932s  Keys used: 16 out of 16 possible (100.00%).
932s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
932s  Average pigeons per pigeon hole: 1
932s Writing 16 repeats...Output writing finished in: 0.001 seconds
932s Total time: 0.112 seconds
932s Murasaki finished!
932s PASSED MURASAKI
932s 
932s Testing Genepare on NZ_GG705100.fna
932s 18446744073709551502
932s PASSED GENEPARSE
932s 
932s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
932s Testing mbfa on NZ_GG705100.fna
932s PASSED mbfa
932s 
932s Test Murasaki on NZ_GG705101.fna
932s Verbosity level is: 0
932s Writing to: output/test
932s Pattern is: 101
932s Max usable hash bits: 27
932s Hit filter is: 0
932s Hash table type is: EcoHash
932s Hashing every: 1 base
932s Histogram detail is: 0
932s Hashing function is: 3
932s Collision profiling is: disabled
932s Repeats are: unmasked
932s Mergefilter is at: 100
932s Random seed: 1710370328 (automatic)
932s Bitscore output: on
932s Leave status records: no
932s Join neighbors is: off
932s Target memory is: 3.43 GB
932s Retain members is: true
932s Store repeatmap? yes
932s Reverse complement data is generated on the fly
932s Rifts allowed: 0
932s Fuzzy Extension: yes
932s Score by minimum pair: yes
932s Gapped anchors: no
932s Large sequence support is: enabled => seqpos is 8 bytes
932s Murasaki version 1.68.6 (LARGESEQ)
932s Loading NZ_GG705101.fna
932s Read 832bp (832 bytesp) in 0.001 seconds (879.3 KBp/s)
932s Done with forward strand (832bp). Preparing reverse complement...
932s  <-> Reversing metdata.
932s Done.
932s Seq NZ_GG705101.fna loaded. 832 bytes
932s Loading NZ_GG705101.gbk
932s Read 832bp (832 bytesp) in 0.000 seconds (2.1 MBp/s)
932s Done with forward strand (832bp). Preparing reverse complement...
932s  <-> Reversing metdata.
932s Done.
932s Seq NZ_GG705101.gbk loaded. 832 bytes
932s Sequence loading took: 0.002 seconds
932s Forward frequencies:  A:33.6538%  C:15.9856%  G:18.149%  T:32.2115%
932s Global base frequencies:  A/T:65.8654%  C/G:34.1346%
932s Pat: 3 bases long with weight 2
932s    1 101 
932s Computing hash parameters...
932s Using 4 hashbits
932s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 91%........
932s Acceptable hash function found after 1000 cycles.
932s Best uses 2/2 bases and has 0 empties from 2 inputs.
932s Score: 0.96875 (cf. worst: -4.51562)
932s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
932s Total correlation penalty: 0
932s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
932s                                             10
932s                                             ==
932s w[ 0]>>29:                                 -.C
932s w[ 0]>>30:                                  A.-
932s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
932s Ecolist (optimistic): Expcted entries per list: 8
932s Ecolist (optimistic): Minimum chunks per list: 4
932s Would take minimum 256.000000 bytes to make perfect hash.
932s Hashing 3.25 KB of sequence requires: 
932s  ~ linear (in seq length) hashing cost of 5.28 KB
932s  ~ linear (in seq length) expected anchor cost of 78.00 KB
932s Initial hash table uses: 256 bytes (4 bits, 16 entries)
932s Expected memory usage (without anchors): 5.53 KB
932s Expected memory usage (with anchors): 83.53 KB
932s Hash parameters computed in 0.101 seconds
932s Creating storage structures: 16 entries in 256 bytes space.
932s Storage structures created in: 0.000 seconds
932s 
932s Hashing NZ_GG705101.fna forwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 91%........
932s Hashing NZ_GG705101.fna backwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 91%........
932s Hashing NZ_GG705101.gbk forwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 91%........
932s Hashing NZ_GG705101.gbk backwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 91%........
932s Initial hashing took: 0.002 seconds
932s Extracting anchors from hash-space.
932s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:08 2024
932s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 93%.
932s Anchor extraction completed in: 0.001 seconds
932s Total anchors: 0
932s Anchor extraction + merge time: 0.001 seconds
932s Total processing time: 0.107 seconds
932s Writing anchors...
932s Total seeds used in anchors: 16
932s Hash performance:
932s  Keys used: 16 out of 16 possible (100.00%).
932s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
932s  Average pigeons per pigeon hole: 1
932s Writing 16 repeats...Output writing finished in: 0.001 seconds
932s Total time: 0.107 seconds
932s Murasaki finished!
932s PASSED MURASAKI
932s 
932s Testing Genepare on NZ_GG705101.fna
932s 18446744073709551449
932s PASSED GENEPARSE
932s 
932s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
932s Testing mbfa on NZ_GG705101.fna
932s PASSED mbfa
932s 
932s Test Murasaki on NZ_GG705102.fna
932s Verbosity level is: 0
932s Writing to: output/test
932s Pattern is: 101
932s Max usable hash bits: 27
932s Hit filter is: 0
932s Hash table type is: EcoHash
932s Hashing every: 1 base
932s Histogram detail is: 0
932s Hashing function is: 3
932s Collision profiling is: disabled
932s Repeats are: unmasked
932s Mergefilter is at: 100
932s Random seed: 1710370328 (automatic)
932s Bitscore output: on
932s Leave status records: no
932s Join neighbors is: off
932s Target memory is: 3.43 GB
932s Retain members is: true
932s Store repeatmap? yes
932s Reverse complement data is generated on the fly
932s Rifts allowed: 0
932s Fuzzy Extension: yes
932s Score by minimum pair: yes
932s Gapped anchors: no
932s Large sequence support is: enabled => seqpos is 8 bytes
932s Murasaki version 1.68.6 (LARGESEQ)
932s Loading NZ_GG705102.fna
932s Read 828bp (828 bytesp) in 0.001 seconds (1.1 MBp/s)
932s Done with forward strand (828bp). Preparing reverse complement...
932s  <-> Reversing metdata.
932s Done.
932s Seq NZ_GG705102.fna loaded. 828 bytes
932s Loading NZ_GG705102.gbk
932s Read 828bp (828 bytesp) in 0.001 seconds (1008.2 KBp/s)
932s Done with forward strand (828bp). Preparing reverse complement...
932s  <-> Reversing metdata.
932s Done.
932s Seq NZ_GG705102.gbk loaded. 828 bytes
932s Sequence loading took: 0.002 seconds
932s Forward frequencies:  A:29.8309%  C:22.4638%  G:25%  T:22.7053%
932s Global base frequencies:  A/T:52.5362%  C/G:47.4638%
932s Pat: 3 bases long with weight 2
932s    1 101 
932s Computing hash parameters...
932s Using 4 hashbits
932s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 91%........
932s Acceptable hash function found after 1000 cycles.
932s Best uses 2/2 bases and has 0 empties from 2 inputs.
932s Score: 0.96875 (cf. worst: -4.51562)
932s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
932s Total correlation penalty: 0
932s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
932s                                             10
932s                                             ==
932s w[ 0]>>29:                                 -.C
932s w[ 0]>>30:                                  A.-
932s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
932s Ecolist (optimistic): Expcted entries per list: 8
932s Ecolist (optimistic): Minimum chunks per list: 4
932s Would take minimum 256.000000 bytes to make perfect hash.
932s Hashing 3.23 KB of sequence requires: 
932s  ~ linear (in seq length) hashing cost of 5.26 KB
932s  ~ linear (in seq length) expected anchor cost of 77.62 KB
932s Initial hash table uses: 256 bytes (4 bits, 16 entries)
932s Expected memory usage (without anchors): 5.51 KB
932s Expected memory usage (with anchors): 83.13 KB
932s Hash parameters computed in 0.101 seconds
932s Creating storage structures: 16 entries in 256 bytes space.
932s Storage structures created in: 0.000 seconds
932s 
932s Hashing NZ_GG705102.fna forwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705102.fna backwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705102.gbk forwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Hashing NZ_GG705102.gbk backwards
932s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 90%........
932s Initial hashing took: 0.002 seconds
932s Extracting anchors from hash-space.
932s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:08 2024
932s 93%.
932s Anchor extraction completed in: 0.002 seconds
932s Total anchors: 0
932s Anchor extraction + merge time: 0.002 seconds
932s Total processing time: 0.107 seconds
932s Writing anchors...
932s Total seeds used in anchors: 16
932s Hash performance:
932s  Keys used: 16 out of 16 possible (100.00%).
932s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
932s  Average pigeons per pigeon hole: 1
932s Writing 16 repeats...Output writing finished in: 0.001 seconds
932s Total time: 0.108 seconds
932s Murasaki finished!
932s PASSED MURASAKI
932s 
932s Testing Genepare on NZ_GG705102.fna
932s 18446744073709551445
932s PASSED GENEPARSE
932s 
933s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
933s Testing mbfa on NZ_GG705102.fna
933s PASSED mbfa
933s 
933s Test Murasaki on NZ_GG705103.fna
933s Verbosity level is: 0
933s Writing to: output/test
933s Pattern is: 101
933s Max usable hash bits: 27
933s Hit filter is: 0
933s Hash table type is: EcoHash
933s Hashing every: 1 base
933s Histogram detail is: 0
933s Hashing function is: 3
933s Collision profiling is: disabled
933s Repeats are: unmasked
933s Mergefilter is at: 100
933s Random seed: 1710370328 (automatic)
933s Bitscore output: on
933s Leave status records: no
933s Join neighbors is: off
933s Target memory is: 3.43 GB
933s Retain members is: true
933s Store repeatmap? yes
933s Reverse complement data is generated on the fly
933s Rifts allowed: 0
933s Fuzzy Extension: yes
933s Score by minimum pair: yes
933s Gapped anchors: no
933s Large sequence support is: enabled => seqpos is 8 bytes
933s Murasaki version 1.68.6 (LARGESEQ)
933s Loading NZ_GG705103.fna
933s Read 828bp (828 bytesp) in 0.001 seconds (942.4 KBp/s)
933s Done with forward strand (828bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705103.fna loaded. 828 bytes
933s Loading NZ_GG705103.gbk
933s Read 828bp (828 bytesp) in 0.000 seconds (2.2 MBp/s)
933s Done with forward strand (828bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705103.gbk loaded. 828 bytes
933s Sequence loading took: 0.001 seconds
933s Forward frequencies:  A:31.1594%  C:20.6522%  G:22.2222%  T:25.9662%
933s Global base frequencies:  A/T:57.1256%  C/G:42.8744%
933s Pat: 3 bases long with weight 2
933s    1 101 
933s Computing hash parameters...
933s Using 4 hashbits
933s  0%......... (T -0.097 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%........
933s Acceptable hash function found after 1000 cycles.
933s Best uses 2/2 bases and has 0 empties from 2 inputs.
933s Score: 0.96875 (cf. worst: -4.51562)
933s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
933s Total correlation penalty: 0
933s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
933s                                             10
933s                                             ==
933s w[ 0]>>29:                                 -.C
933s w[ 0]>>30:                                  A.-
933s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
933s Ecolist (optimistic): Expcted entries per list: 8
933s Ecolist (optimistic): Minimum chunks per list: 4
933s Would take minimum 256.000000 bytes to make perfect hash.
933s Hashing 3.23 KB of sequence requires: 
933s  ~ linear (in seq length) hashing cost of 5.26 KB
933s  ~ linear (in seq length) expected anchor cost of 77.62 KB
933s Initial hash table uses: 256 bytes (4 bits, 16 entries)
933s Expected memory usage (without anchors): 5.51 KB
933s Expected memory usage (with anchors): 83.13 KB
933s Hash parameters computed in 0.101 seconds
933s Creating storage structures: 16 entries in 256 bytes space.
933s Storage structures created in: 0.000 seconds
933s 
933s Hashing NZ_GG705103.fna forwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 90%........
933s Hashing NZ_GG705103.fna backwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 90%........
933s Hashing NZ_GG705103.gbk forwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 90%........
933s Hashing NZ_GG705103.gbk backwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 90%........
933s Initial hashing took: 0.002 seconds
933s Extracting anchors from hash-space.
933s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:09 2024
933s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 93%.
933s Anchor extraction completed in: 0.002 seconds
933s Total anchors: 0
933s Anchor extraction + merge time: 0.002 seconds
933s Total processing time: 0.107 seconds
933s Writing anchors...
933s Total seeds used in anchors: 16
933s Hash performance:
933s  Keys used: 16 out of 16 possible (100.00%).
933s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
933s  Average pigeons per pigeon hole: 1
933s Writing 16 repeats...Output writing finished in: 0.001 seconds
933s Total time: 0.108 seconds
933s Murasaki finished!
933s PASSED MURASAKI
933s 
933s Testing Genepare on NZ_GG705103.fna
933s 18446744073709551445
933s PASSED GENEPARSE
933s 
933s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
933s Testing mbfa on NZ_GG705103.fna
933s PASSED mbfa
933s 
933s Test Murasaki on NZ_GG705104.fna
933s Verbosity level is: 0
933s Writing to: output/test
933s Pattern is: 101
933s Max usable hash bits: 27
933s Hit filter is: 0
933s Hash table type is: EcoHash
933s Hashing every: 1 base
933s Histogram detail is: 0
933s Hashing function is: 3
933s Collision profiling is: disabled
933s Repeats are: unmasked
933s Mergefilter is at: 100
933s Random seed: 1710370329 (automatic)
933s Bitscore output: on
933s Leave status records: no
933s Join neighbors is: off
933s Target memory is: 3.43 GB
933s Retain members is: true
933s Store repeatmap? yes
933s Reverse complement data is generated on the fly
933s Rifts allowed: 0
933s Fuzzy Extension: yes
933s Score by minimum pair: yes
933s Gapped anchors: no
933s Large sequence support is: enabled => seqpos is 8 bytes
933s Murasaki version 1.68.6 (LARGESEQ)
933s Loading NZ_GG705104.fna
933s Read 821bp (821 bytesp) in 0.001 seconds (1.4 MBp/s)
933s Done with forward strand (821bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705104.fna loaded. 821 bytes
933s Loading NZ_GG705104.gbk
933s Read 821bp (821 bytesp) in 0.000 seconds (2.1 MBp/s)
933s Done with forward strand (821bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705104.gbk loaded. 821 bytes
933s Sequence loading took: 0.001 seconds
933s Forward frequencies:  A:28.5018%  C:21.6809%  G:23.1425%  T:26.6748%
933s Global base frequencies:  A/T:55.1766%  C/G:44.8234%
933s Pat: 3 bases long with weight 2
933s    1 101 
933s Computing hash parameters...
933s Using 4 hashbits
933s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%........
933s Acceptable hash function found after 1000 cycles.
933s Best uses 2/2 bases and has 0 empties from 2 inputs.
933s Score: 0.96875 (cf. worst: -4.51562)
933s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
933s Total correlation penalty: 0
933s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
933s                                             10
933s                                             ==
933s w[ 0]>>29:                                 -.C
933s w[ 0]>>30:                                  A.-
933s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
933s Ecolist (optimistic): Expcted entries per list: 8
933s Ecolist (optimistic): Minimum chunks per list: 4
933s Would take minimum 256.000000 bytes to make perfect hash.
933s Hashing 3.21 KB of sequence requires: 
933s  ~ linear (in seq length) hashing cost of 5.21 KB
933s  ~ linear (in seq length) expected anchor cost of 76.97 KB
933s Initial hash table uses: 256 bytes (4 bits, 16 entries)
933s Expected memory usage (without anchors): 5.46 KB
933s Expected memory usage (with anchors): 82.42 KB
933s Hash parameters computed in 0.101 seconds
933s Creating storage structures: 16 entries in 256 bytes space.
933s Storage structures created in: 0.000 seconds
933s 
933s Hashing NZ_GG705104.fna forwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%.......
933s Hashing NZ_GG705104.fna backwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%.......
933s Hashing NZ_GG705104.gbk forwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%.......
933s Hashing NZ_GG705104.gbk backwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%.......
933s Initial hashing took: 0.002 seconds
933s Extracting anchors from hash-space.
933s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 93%.
933s Anchor extraction completed in: 0.002 seconds
933s Total anchors: 0
933s Anchor extraction + merge time: 0.002 seconds
933s Total processing time: 0.107 seconds
933s Writing anchors...
933s Total seeds used in anchors: 16
933s Hash performance:
933s  Keys used: 16 out of 16 possible (100.00%).
933s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
933s  Average pigeons per pigeon hole: 1
933s Writing 16 repeats...Output writing finished in: 0.001 seconds
933s Total time: 0.108 seconds
933s Murasaki finished!
933s PASSED MURASAKI
933s 
933s Testing Genepare on NZ_GG705104.fna
933s 18446744073709551438
933s PASSED GENEPARSE
933s 
933s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
933s Testing mbfa on NZ_GG705104.fna
933s PASSED mbfa
933s 
933s Test Murasaki on NZ_GG705105.fna
933s Verbosity level is: 0
933s Writing to: output/test
933s Pattern is: 101
933s Max usable hash bits: 27
933s Hit filter is: 0
933s Hash table type is: EcoHash
933s Hashing every: 1 base
933s Histogram detail is: 0
933s Hashing function is: 3
933s Collision profiling is: disabled
933s Repeats are: unmasked
933s Mergefilter is at: 100
933s Random seed: 1710370329 (automatic)
933s Bitscore output: on
933s Leave status records: no
933s Join neighbors is: off
933s Target memory is: 3.43 GB
933s Retain members is: true
933s Store repeatmap? yes
933s Reverse complement data is generated on the fly
933s Rifts allowed: 0
933s Fuzzy Extension: yes
933s Score by minimum pair: yes
933s Gapped anchors: no
933s Large sequence support is: enabled => seqpos is 8 bytes
933s Murasaki version 1.68.6 (LARGESEQ)
933s Loading NZ_GG705105.fna
933s Read 802bp (802 bytesp) in 0.001 seconds (1.0 MBp/s)
933s Done with forward strand (802bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705105.fna loaded. 802 bytes
933s Loading NZ_GG705105.gbk
933s Read 802bp (802 bytesp) in 0.000 seconds (2.2 MBp/s)
933s Done with forward strand (802bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705105.gbk loaded. 802 bytes
933s Sequence loading took: 0.001 seconds
933s Forward frequencies:  A:33.9152%  C:17.7057%  G:18.2045%  T:30.1746%
933s Global base frequencies:  A/T:64.0898%  C/G:35.9102%
933s Pat: 3 bases long with weight 2
933s    1 101 
933s Computing hash parameters...
933s Using 4 hashbits
933s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%........
933s Acceptable hash function found after 1000 cycles.
933s Best uses 2/2 bases and has 0 empties from 2 inputs.
933s Score: 0.96875 (cf. worst: -4.51562)
933s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
933s Total correlation penalty: 0
933s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
933s                                             10
933s                                             ==
933s w[ 0]>>29:                                 -.C
933s w[ 0]>>30:                                  A.-
933s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
933s Ecolist (optimistic): Expcted entries per list: 8
933s Ecolist (optimistic): Minimum chunks per list: 4
933s Would take minimum 256.000000 bytes to make perfect hash.
933s Hashing 3.13 KB of sequence requires: 
933s  ~ linear (in seq length) hashing cost of 5.09 KB
933s  ~ linear (in seq length) expected anchor cost of 75.19 KB
933s Initial hash table uses: 256 bytes (4 bits, 16 entries)
933s Expected memory usage (without anchors): 5.34 KB
933s Expected memory usage (with anchors): 80.53 KB
933s Hash parameters computed in 0.107 seconds
933s Creating storage structures: 16 entries in 256 bytes space.
933s Storage structures created in: 0.001 seconds
933s 
933s Hashing NZ_GG705105.fna forwards
933s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%.......
933s Hashing NZ_GG705105.fna backwards
933s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%.......
933s Hashing NZ_GG705105.gbk forwards
933s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%.......
933s Hashing NZ_GG705105.gbk backwards
933s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%.......
933s Initial hashing took: 0.002 seconds
933s Extracting anchors from hash-space.
933s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 93%.
933s Anchor extraction completed in: 0.002 seconds
933s Total anchors: 0
933s Anchor extraction + merge time: 0.002 seconds
933s Total processing time: 0.113 seconds
933s Writing anchors...
933s Total seeds used in anchors: 16
933s Hash performance:
933s  Keys used: 16 out of 16 possible (100.00%).
933s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
933s  Average pigeons per pigeon hole: 1
933s Writing 16 repeats...Output writing finished in: 0.001 seconds
933s Total time: 0.114 seconds
933s Murasaki finished!
933s PASSED MURASAKI
933s 
933s Testing Genepare on NZ_GG705105.fna
933s 18446744073709551419
933s PASSED GENEPARSE
933s 
933s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
933s Testing mbfa on NZ_GG705105.fna
933s PASSED mbfa
933s 
933s Test Murasaki on NZ_GG705106.fna
933s Verbosity level is: 0
933s Writing to: output/test
933s Pattern is: 101
933s Max usable hash bits: 27
933s Hit filter is: 0
933s Hash table type is: EcoHash
933s Hashing every: 1 base
933s Histogram detail is: 0
933s Hashing function is: 3
933s Collision profiling is: disabled
933s Repeats are: unmasked
933s Mergefilter is at: 100
933s Random seed: 1710370329 (automatic)
933s Bitscore output: on
933s Leave status records: no
933s Join neighbors is: off
933s Target memory is: 3.43 GB
933s Retain members is: true
933s Store repeatmap? yes
933s Reverse complement data is generated on the fly
933s Rifts allowed: 0
933s Fuzzy Extension: yes
933s Score by minimum pair: yes
933s Gapped anchors: no
933s Large sequence support is: enabled => seqpos is 8 bytes
933s Murasaki version 1.68.6 (LARGESEQ)
933s Loading NZ_GG705106.fna
933s Read 800bp (800 bytesp) in 0.001 seconds (921.3 KBp/s)
933s Done with forward strand (800bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705106.fna loaded. 800 bytes
933s Loading NZ_GG705106.gbk
933s Read 800bp (800 bytesp) in 0.000 seconds (2.1 MBp/s)
933s Done with forward strand (800bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705106.gbk loaded. 800 bytes
933s Sequence loading took: 0.001 seconds
933s Forward frequencies:  A:28.875%  C:18%  G:21.625%  T:31.5%
933s Global base frequencies:  A/T:60.375%  C/G:39.625%
933s Pat: 3 bases long with weight 2
933s    1 101 
933s Computing hash parameters...
933s Using 4 hashbits
933s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 91%........
933s Acceptable hash function found after 1000 cycles.
933s Best uses 2/2 bases and has 0 empties from 2 inputs.
933s Score: 0.96875 (cf. worst: -4.51562)
933s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
933s Total correlation penalty: 0
933s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
933s                                             10
933s                                             ==
933s w[ 0]>>29:                                 -.C
933s w[ 0]>>30:                                  A.-
933s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
933s Ecolist (optimistic): Expcted entries per list: 8
933s Ecolist (optimistic): Minimum chunks per list: 4
933s Would take minimum 256.000000 bytes to make perfect hash.
933s Hashing 3.12 KB of sequence requires: 
933s  ~ linear (in seq length) hashing cost of 5.08 KB
933s  ~ linear (in seq length) expected anchor cost of 75.00 KB
933s Initial hash table uses: 256 bytes (4 bits, 16 entries)
933s Expected memory usage (without anchors): 5.33 KB
933s Expected memory usage (with anchors): 80.33 KB
933s Hash parameters computed in 0.103 seconds
933s Creating storage structures: 16 entries in 256 bytes space.
933s Storage structures created in: 0.000 seconds
933s 
933s Hashing NZ_GG705106.fna forwards
933s  0%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.003 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 90%.........
933s Hashing NZ_GG705106.fna backwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 90%.........
933s Hashing NZ_GG705106.gbk forwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 90%.........
933s Hashing NZ_GG705106.gbk backwards
933s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 90%.........
933s Initial hashing took: 0.005 seconds
933s Extracting anchors from hash-space.
933s  (T -0.004 seconds) ETA: Wed Mar 13 22:52:09 2024
933s  6%. (T -0.003 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 18%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 31%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:09 2024
933s 93%.
933s Anchor extraction completed in: 0.002 seconds
933s Total anchors: 0
933s Anchor extraction + merge time: 0.002 seconds
933s Total processing time: 0.112 seconds
933s Writing anchors...
933s Total seeds used in anchors: 16
933s Hash performance:
933s  Keys used: 16 out of 16 possible (100.00%).
933s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
933s  Average pigeons per pigeon hole: 1
933s Writing 16 repeats...Output writing finished in: 0.001 seconds
933s Total time: 0.112 seconds
933s Murasaki finished!
933s PASSED MURASAKI
933s 
933s Testing Genepare on NZ_GG705106.fna
933s 18446744073709551417
933s PASSED GENEPARSE
933s 
933s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
933s Testing mbfa on NZ_GG705106.fna
933s PASSED mbfa
933s 
933s Test Murasaki on NZ_GG705107.fna
933s Verbosity level is: 0
933s Writing to: output/test
933s Pattern is: 101
933s Max usable hash bits: 27
933s Hit filter is: 0
933s Hash table type is: EcoHash
933s Hashing every: 1 base
933s Histogram detail is: 0
933s Hashing function is: 3
933s Collision profiling is: disabled
933s Repeats are: unmasked
933s Mergefilter is at: 100
933s Random seed: 1710370329 (automatic)
933s Bitscore output: on
933s Leave status records: no
933s Join neighbors is: off
933s Target memory is: 3.43 GB
933s Retain members is: true
933s Store repeatmap? yes
933s Reverse complement data is generated on the fly
933s Rifts allowed: 0
933s Fuzzy Extension: yes
933s Score by minimum pair: yes
933s Gapped anchors: no
933s Large sequence support is: enabled => seqpos is 8 bytes
933s Murasaki version 1.68.6 (LARGESEQ)
933s Loading NZ_GG705107.fna
933s Read 793bp (793 bytesp) in 0.000 seconds (1.5 MBp/s)
933s Done with forward strand (793bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705107.fna loaded. 793 bytes
933s Loading NZ_GG705107.gbk
933s Read 793bp (793 bytesp) in 0.000 seconds (2.1 MBp/s)
933s Done with forward strand (793bp). Preparing reverse complement...
933s  <-> Reversing metdata.
933s Done.
933s Seq NZ_GG705107.gbk loaded. 793 bytes
933s Sequence loading took: 0.001 seconds
933s Forward frequencies:  A:29.5082%  C:14.3758%  G:19.4199%  T:36.6961%
933s Global base frequencies:  A/T:66.2043%  C/G:33.7957%
933s Pat: 3 bases long with weight 2
933s    1 101 
933s Computing hash parameters...
933s Using 4 hashbits
934s  0%......... (T -0.098 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.085 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.063 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Acceptable hash function found after 1000 cycles.
934s Best uses 2/2 bases and has 0 empties from 2 inputs.
934s Score: 0.96875 (cf. worst: -4.51562)
934s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
934s Total correlation penalty: 0
934s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
934s                                             10
934s                                             ==
934s w[ 0]>>29:                                 -.C
934s w[ 0]>>30:                                  A.-
934s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
934s Ecolist (optimistic): Expcted entries per list: 8
934s Ecolist (optimistic): Minimum chunks per list: 4
934s Would take minimum 256.000000 bytes to make perfect hash.
934s Hashing 3.10 KB of sequence requires: 
934s  ~ linear (in seq length) hashing cost of 5.03 KB
934s  ~ linear (in seq length) expected anchor cost of 74.34 KB
934s Initial hash table uses: 256 bytes (4 bits, 16 entries)
934s Expected memory usage (without anchors): 5.28 KB
934s Expected memory usage (with anchors): 79.62 KB
934s Hash parameters computed in 0.104 seconds
934s Creating storage structures: 16 entries in 256 bytes space.
934s Storage structures created in: 0.000 seconds
934s 
934s Hashing NZ_GG705107.fna forwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Hashing NZ_GG705107.fna backwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Hashing NZ_GG705107.gbk forwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Hashing NZ_GG705107.gbk backwards
934s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Initial hashing took: 0.002 seconds
934s Extracting anchors from hash-space.
934s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 93%.
934s Anchor extraction completed in: 0.002 seconds
934s Total anchors: 0
934s Anchor extraction + merge time: 0.002 seconds
934s Total processing time: 0.110 seconds
934s Writing anchors...
934s Total seeds used in anchors: 16
934s Hash performance:
934s  Keys used: 16 out of 16 possible (100.00%).
934s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
934s  Average pigeons per pigeon hole: 1
934s Writing 16 repeats...Output writing finished in: 0.001 seconds
934s Total time: 0.111 seconds
934s Murasaki finished!
934s PASSED MURASAKI
934s 
934s Testing Genepare on NZ_GG705107.fna
934s 18446744073709551410
934s PASSED GENEPARSE
934s 
934s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
934s Testing mbfa on NZ_GG705107.fna
934s PASSED mbfa
934s 
934s Test Murasaki on NZ_GG705108.fna
934s Verbosity level is: 0
934s Writing to: output/test
934s Pattern is: 101
934s Max usable hash bits: 27
934s Hit filter is: 0
934s Hash table type is: EcoHash
934s Hashing every: 1 base
934s Histogram detail is: 0
934s Hashing function is: 3
934s Collision profiling is: disabled
934s Repeats are: unmasked
934s Mergefilter is at: 100
934s Random seed: 1710370330 (automatic)
934s Bitscore output: on
934s Leave status records: no
934s Join neighbors is: off
934s Target memory is: 3.43 GB
934s Retain members is: true
934s Store repeatmap? yes
934s Reverse complement data is generated on the fly
934s Rifts allowed: 0
934s Fuzzy Extension: yes
934s Score by minimum pair: yes
934s Gapped anchors: no
934s Large sequence support is: enabled => seqpos is 8 bytes
934s Murasaki version 1.68.6 (LARGESEQ)
934s Loading NZ_GG705108.fna
934s Read 792bp (792 bytesp) in 0.001 seconds (1.2 MBp/s)
934s Done with forward strand (792bp). Preparing reverse complement...
934s  <-> Reversing metdata.
934s Done.
934s Seq NZ_GG705108.fna loaded. 792 bytes
934s Loading NZ_GG705108.gbk
934s Read 792bp (792 bytesp) in 0.000 seconds (2.3 MBp/s)
934s Done with forward strand (792bp). Preparing reverse complement...
934s  <-> Reversing metdata.
934s Done.
934s Seq NZ_GG705108.gbk loaded. 792 bytes
934s Sequence loading took: 0.001 seconds
934s Forward frequencies:  A:34.9747%  C:15.6566%  G:20.8333%  T:28.5354%
934s Global base frequencies:  A/T:63.5101%  C/G:36.4899%
934s Pat: 3 bases long with weight 2
934s    1 101 
934s Computing hash parameters...
934s Using 4 hashbits
934s  0%......... (T -0.092 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.081 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Acceptable hash function found after 1000 cycles.
934s Best uses 2/2 bases and has 0 empties from 2 inputs.
934s Score: 0.96875 (cf. worst: -4.51562)
934s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
934s Total correlation penalty: 0
934s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
934s                                             10
934s                                             ==
934s w[ 0]>>29:                                 -.C
934s w[ 0]>>30:                                  A.-
934s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
934s Ecolist (optimistic): Expcted entries per list: 8
934s Ecolist (optimistic): Minimum chunks per list: 4
934s Would take minimum 256.000000 bytes to make perfect hash.
934s Hashing 3.09 KB of sequence requires: 
934s  ~ linear (in seq length) hashing cost of 5.03 KB
934s  ~ linear (in seq length) expected anchor cost of 74.25 KB
934s Initial hash table uses: 256 bytes (4 bits, 16 entries)
934s Expected memory usage (without anchors): 5.28 KB
934s Expected memory usage (with anchors): 79.53 KB
934s Hash parameters computed in 0.101 seconds
934s Creating storage structures: 16 entries in 256 bytes space.
934s Storage structures created in: 0.000 seconds
934s 
934s Hashing NZ_GG705108.fna forwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Hashing NZ_GG705108.fna backwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Hashing NZ_GG705108.gbk forwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Hashing NZ_GG705108.gbk backwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Initial hashing took: 0.002 seconds
934s Extracting anchors from hash-space.
934s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:10 2024
934s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 93%.
934s Anchor extraction completed in: 0.002 seconds
934s Total anchors: 0
934s Anchor extraction + merge time: 0.002 seconds
934s Total processing time: 0.107 seconds
934s Writing anchors...
934s Total seeds used in anchors: 16
934s Hash performance:
934s  Keys used: 16 out of 16 possible (100.00%).
934s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
934s  Average pigeons per pigeon hole: 1
934s Writing 16 repeats...Output writing finished in: 0.001 seconds
934s Total time: 0.108 seconds
934s Murasaki finished!
934s PASSED MURASAKI
934s 
934s Testing Genepare on NZ_GG705108.fna
934s 18446744073709551409
934s PASSED GENEPARSE
934s 
934s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
934s Testing mbfa on NZ_GG705108.fna
934s PASSED mbfa
934s 
934s Test Murasaki on NZ_GG705109.fna
934s Verbosity level is: 0
934s Writing to: output/test
934s Pattern is: 101
934s Max usable hash bits: 27
934s Hit filter is: 0
934s Hash table type is: EcoHash
934s Hashing every: 1 base
934s Histogram detail is: 0
934s Hashing function is: 3
934s Collision profiling is: disabled
934s Repeats are: unmasked
934s Mergefilter is at: 100
934s Random seed: 1710370330 (automatic)
934s Bitscore output: on
934s Leave status records: no
934s Join neighbors is: off
934s Target memory is: 3.43 GB
934s Retain members is: true
934s Store repeatmap? yes
934s Reverse complement data is generated on the fly
934s Rifts allowed: 0
934s Fuzzy Extension: yes
934s Score by minimum pair: yes
934s Gapped anchors: no
934s Large sequence support is: enabled => seqpos is 8 bytes
934s Murasaki version 1.68.6 (LARGESEQ)
934s Loading NZ_GG705109.fna
934s Read 790bp (790 bytesp) in 0.001 seconds (1.1 MBp/s)
934s Done with forward strand (790bp). Preparing reverse complement...
934s  <-> Reversing metdata.
934s Done.
934s Seq NZ_GG705109.fna loaded. 790 bytes
934s Loading NZ_GG705109.gbk
934s Read 790bp (790 bytesp) in 0.000 seconds (2.3 MBp/s)
934s Done with forward strand (790bp). Preparing reverse complement...
934s  <-> Reversing metdata.
934s Done.
934s Seq NZ_GG705109.gbk loaded. 790 bytes
934s Sequence loading took: 0.001 seconds
934s Forward frequencies:  A:27.5949%  C:25.0633%  G:23.038%  T:24.3038%
934s Global base frequencies:  A/T:51.8987%  C/G:48.1013%
934s Pat: 3 bases long with weight 2
934s    1 101 
934s Computing hash parameters...
934s Using 4 hashbits
934s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.081 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Acceptable hash function found after 1000 cycles.
934s Best uses 2/2 bases and has 0 empties from 2 inputs.
934s Score: 0.96875 (cf. worst: -4.51562)
934s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
934s Total correlation penalty: 0
934s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
934s                                             10
934s                                             ==
934s w[ 0]>>29:                                 -.C
934s w[ 0]>>30:                                  A.-
934s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
934s Ecolist (optimistic): Expcted entries per list: 8
934s Ecolist (optimistic): Minimum chunks per list: 4
934s Would take minimum 256.000000 bytes to make perfect hash.
934s Hashing 3.09 KB of sequence requires: 
934s  ~ linear (in seq length) hashing cost of 5.01 KB
934s  ~ linear (in seq length) expected anchor cost of 74.06 KB
934s Initial hash table uses: 256 bytes (4 bits, 16 entries)
934s Expected memory usage (without anchors): 5.26 KB
934s Expected memory usage (with anchors): 79.33 KB
934s Hash parameters computed in 0.101 seconds
934s Creating storage structures: 16 entries in 256 bytes space.
934s Storage structures created in: 0.000 seconds
934s 
934s Hashing NZ_GG705109.fna forwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 90%.........
934s Hashing NZ_GG705109.fna backwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 90%.........
934s Hashing NZ_GG705109.gbk forwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 90%.........
934s Hashing NZ_GG705109.gbk backwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 90%.........
934s Initial hashing took: 0.002 seconds
934s Extracting anchors from hash-space.
934s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:10 2024
934s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 93%.
934s Anchor extraction completed in: 0.002 seconds
934s Total anchors: 0
934s Anchor extraction + merge time: 0.002 seconds
934s Total processing time: 0.106 seconds
934s Writing anchors...
934s Total seeds used in anchors: 16
934s Hash performance:
934s  Keys used: 16 out of 16 possible (100.00%).
934s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
934s  Average pigeons per pigeon hole: 1
934s Writing 16 repeats...Output writing finished in: 0.001 seconds
934s Total time: 0.107 seconds
934s Murasaki finished!
934s PASSED MURASAKI
934s 
934s Testing Genepare on NZ_GG705109.fna
934s 18446744073709551407
934s PASSED GENEPARSE
934s 
934s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
934s Testing mbfa on NZ_GG705109.fna
934s PASSED mbfa
934s 
934s Test Murasaki on NZ_GG705110.fna
934s Verbosity level is: 0
934s Writing to: output/test
934s Pattern is: 101
934s Max usable hash bits: 27
934s Hit filter is: 0
934s Hash table type is: EcoHash
934s Hashing every: 1 base
934s Histogram detail is: 0
934s Hashing function is: 3
934s Collision profiling is: disabled
934s Repeats are: unmasked
934s Mergefilter is at: 100
934s Random seed: 1710370330 (automatic)
934s Bitscore output: on
934s Leave status records: no
934s Join neighbors is: off
934s Target memory is: 3.43 GB
934s Retain members is: true
934s Store repeatmap? yes
934s Reverse complement data is generated on the fly
934s Rifts allowed: 0
934s Fuzzy Extension: yes
934s Score by minimum pair: yes
934s Gapped anchors: no
934s Large sequence support is: enabled => seqpos is 8 bytes
934s Murasaki version 1.68.6 (LARGESEQ)
934s Loading NZ_GG705110.fna
934s Read 789bp (789 bytesp) in 0.001 seconds (1.2 MBp/s)
934s Done with forward strand (789bp). Preparing reverse complement...
934s  <-> Reversing metdata.
934s Done.
934s Seq NZ_GG705110.fna loaded. 789 bytes
934s Loading NZ_GG705110.gbk
934s Read 789bp (789 bytesp) in 0.000 seconds (2.1 MBp/s)
934s Done with forward strand (789bp). Preparing reverse complement...
934s  <-> Reversing metdata.
934s Done.
934s Seq NZ_GG705110.gbk loaded. 789 bytes
934s Sequence loading took: 0.001 seconds
934s Forward frequencies:  A:28.6439%  C:19.5184%  G:16.0963%  T:35.7414%
934s Global base frequencies:  A/T:64.3853%  C/G:35.6147%
934s Pat: 3 bases long with weight 2
934s    1 101 
934s Computing hash parameters...
934s Using 4 hashbits
934s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.081 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 91%........
934s Acceptable hash function found after 1000 cycles.
934s Best uses 2/2 bases and has 0 empties from 2 inputs.
934s Score: 0.96875 (cf. worst: -4.51562)
934s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
934s Total correlation penalty: 0
934s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
934s                                             10
934s                                             ==
934s w[ 0]>>29:                                 -.C
934s w[ 0]>>30:                                  A.-
934s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
934s Ecolist (optimistic): Expcted entries per list: 8
934s Ecolist (optimistic): Minimum chunks per list: 4
934s Would take minimum 256.000000 bytes to make perfect hash.
934s Hashing 3.08 KB of sequence requires: 
934s  ~ linear (in seq length) hashing cost of 5.00 KB
934s  ~ linear (in seq length) expected anchor cost of 73.97 KB
934s Initial hash table uses: 256 bytes (4 bits, 16 entries)
934s Expected memory usage (without anchors): 5.25 KB
934s Expected memory usage (with anchors): 79.22 KB
934s Hash parameters computed in 0.101 seconds
934s Creating storage structures: 16 entries in 256 bytes space.
934s Storage structures created in: 0.000 seconds
934s 
934s Hashing NZ_GG705110.fna forwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 90%.........
934s Hashing NZ_GG705110.fna backwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 90%.........
934s Hashing NZ_GG705110.gbk forwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 90%.........
934s Hashing NZ_GG705110.gbk backwards
934s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 90%.........
934s Initial hashing took: 0.002 seconds
934s Extracting anchors from hash-space.
934s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:10 2024
934s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 93%.
934s Anchor extraction completed in: 0.002 seconds
934s Total anchors: 0
934s Anchor extraction + merge time: 0.002 seconds
934s Total processing time: 0.107 seconds
934s Writing anchors...
934s Total seeds used in anchors: 16
934s Hash performance:
934s  Keys used: 16 out of 16 possible (100.00%).
934s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
934s  Average pigeons per pigeon hole: 1
934s Writing 16 repeats...Output writing finished in: 0.001 seconds
934s Total time: 0.108 seconds
934s Murasaki finished!
934s PASSED MURASAKI
934s 
934s Testing Genepare on NZ_GG705110.fna
934s 18446744073709551406
934s PASSED GENEPARSE
934s 
934s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
934s Testing mbfa on NZ_GG705110.fna
934s PASSED mbfa
934s 
934s Test Murasaki on NZ_GG705111.fna
934s Verbosity level is: 0
934s Writing to: output/test
934s Pattern is: 101
934s Max usable hash bits: 27
934s Hit filter is: 0
934s Hash table type is: EcoHash
934s Hashing every: 1 base
934s Histogram detail is: 0
934s Hashing function is: 3
934s Collision profiling is: disabled
934s Repeats are: unmasked
934s Mergefilter is at: 100
934s Random seed: 1710370330 (automatic)
934s Bitscore output: on
934s Leave status records: no
934s Join neighbors is: off
934s Target memory is: 3.43 GB
934s Retain members is: true
934s Store repeatmap? yes
934s Reverse complement data is generated on the fly
934s Rifts allowed: 0
934s Fuzzy Extension: yes
934s Score by minimum pair: yes
934s Gapped anchors: no
934s Large sequence support is: enabled => seqpos is 8 bytes
934s Murasaki version 1.68.6 (LARGESEQ)
934s Loading NZ_GG705111.fna
934s Read 788bp (788 bytesp) in 0.001 seconds (1.3 MBp/s)
934s Done with forward strand (788bp). Preparing reverse complement...
934s  <-> Reversing metdata.
934s Done.
934s Seq NZ_GG705111.fna loaded. 788 bytes
934s Loading NZ_GG705111.gbk
934s Read 788bp (788 bytesp) in 0.000 seconds (3.0 MBp/s)
934s Done with forward strand (788bp). Preparing reverse complement...
934s  <-> Reversing metdata.
934s Done.
934s Seq NZ_GG705111.gbk loaded. 788 bytes
934s Sequence loading took: 0.001 seconds
934s Forward frequencies:  A:35.1523%  C:15.3553%  G:20.0508%  T:29.4416%
934s Global base frequencies:  A/T:64.5939%  C/G:35.4061%
934s Pat: 3 bases long with weight 2
934s    1 101 
934s Computing hash parameters...
934s Using 4 hashbits
934s  0%......... (T -0.092 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 10%......... (T -0.081 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:10 2024
934s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 91%........
935s Acceptable hash function found after 1000 cycles.
935s Best uses 2/2 bases and has 0 empties from 2 inputs.
935s Score: 0.96875 (cf. worst: -4.51562)
935s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
935s Total correlation penalty: 0
935s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
935s                                             10
935s                                             ==
935s w[ 0]>>29:                                 -.C
935s w[ 0]>>30:                                  A.-
935s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
935s Ecolist (optimistic): Expcted entries per list: 8
935s Ecolist (optimistic): Minimum chunks per list: 4
935s Would take minimum 256.000000 bytes to make perfect hash.
935s Hashing 3.08 KB of sequence requires: 
935s  ~ linear (in seq length) hashing cost of 5.00 KB
935s  ~ linear (in seq length) expected anchor cost of 73.88 KB
935s Initial hash table uses: 256 bytes (4 bits, 16 entries)
935s Expected memory usage (without anchors): 5.25 KB
935s Expected memory usage (with anchors): 79.13 KB
935s Hash parameters computed in 0.101 seconds
935s Creating storage structures: 16 entries in 256 bytes space.
935s Storage structures created in: 0.000 seconds
935s 
935s Hashing NZ_GG705111.fna forwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 90%.........
935s Hashing NZ_GG705111.fna backwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 90%.........
935s Hashing NZ_GG705111.gbk forwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 90%.........
935s Hashing NZ_GG705111.gbk backwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 90%.........
935s Initial hashing took: 0.002 seconds
935s Extracting anchors from hash-space.
935s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:10 2024
935s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:10 2024
935s 93%.
935s Anchor extraction completed in: 0.002 seconds
935s Total anchors: 0
935s Anchor extraction + merge time: 0.002 seconds
935s Total processing time: 0.106 seconds
935s Writing anchors...
935s Total seeds used in anchors: 16
935s Hash performance:
935s  Keys used: 16 out of 16 possible (100.00%).
935s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
935s  Average pigeons per pigeon hole: 1
935s Writing 16 repeats...Output writing finished in: 0.001 seconds
935s Total time: 0.107 seconds
935s Murasaki finished!
935s PASSED MURASAKI
935s 
935s Testing Genepare on NZ_GG705111.fna
935s 18446744073709551405
935s PASSED GENEPARSE
935s 
935s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
935s Testing mbfa on NZ_GG705111.fna
935s PASSED mbfa
935s 
935s Test Murasaki on NZ_GG705112.fna
935s Verbosity level is: 0
935s Writing to: output/test
935s Pattern is: 101
935s Max usable hash bits: 27
935s Hit filter is: 0
935s Hash table type is: EcoHash
935s Hashing every: 1 base
935s Histogram detail is: 0
935s Hashing function is: 3
935s Collision profiling is: disabled
935s Repeats are: unmasked
935s Mergefilter is at: 100
935s Random seed: 1710370331 (automatic)
935s Bitscore output: on
935s Leave status records: no
935s Join neighbors is: off
935s Target memory is: 3.43 GB
935s Retain members is: true
935s Store repeatmap? yes
935s Reverse complement data is generated on the fly
935s Rifts allowed: 0
935s Fuzzy Extension: yes
935s Score by minimum pair: yes
935s Gapped anchors: no
935s Large sequence support is: enabled => seqpos is 8 bytes
935s Murasaki version 1.68.6 (LARGESEQ)
935s Loading NZ_GG705112.fna
935s Read 787bp (787 bytesp) in 0.001 seconds (1.5 MBp/s)
935s Done with forward strand (787bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705112.fna loaded. 787 bytes
935s Loading NZ_GG705112.gbk
935s Read 787bp (787 bytesp) in 0.000 seconds (2.6 MBp/s)
935s Done with forward strand (787bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705112.gbk loaded. 787 bytes
935s Sequence loading took: 0.001 seconds
935s Forward frequencies:  A:29.352%  C:21.601%  G:15.5019%  T:33.5451%
935s Global base frequencies:  A/T:62.8971%  C/G:37.1029%
935s Pat: 3 bases long with weight 2
935s    1 101 
935s Computing hash parameters...
935s Using 4 hashbits
935s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.080 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 91%........
935s Acceptable hash function found after 1000 cycles.
935s Best uses 2/2 bases and has 0 empties from 2 inputs.
935s Score: 0.96875 (cf. worst: -4.51562)
935s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
935s Total correlation penalty: 0
935s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
935s                                             10
935s                                             ==
935s w[ 0]>>29:                                 -.C
935s w[ 0]>>30:                                  A.-
935s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
935s Ecolist (optimistic): Expcted entries per list: 8
935s Ecolist (optimistic): Minimum chunks per list: 4
935s Would take minimum 256.000000 bytes to make perfect hash.
935s Hashing 3.07 KB of sequence requires: 
935s  ~ linear (in seq length) hashing cost of 4.99 KB
935s  ~ linear (in seq length) expected anchor cost of 73.78 KB
935s Initial hash table uses: 256 bytes (4 bits, 16 entries)
935s Expected memory usage (without anchors): 5.24 KB
935s Expected memory usage (with anchors): 79.02 KB
935s Hash parameters computed in 0.101 seconds
935s Creating storage structures: 16 entries in 256 bytes space.
935s Storage structures created in: 0.000 seconds
935s 
935s Hashing NZ_GG705112.fna forwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%.........
935s Hashing NZ_GG705112.fna backwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%.........
935s Hashing NZ_GG705112.gbk forwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%.........
935s Hashing NZ_GG705112.gbk backwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%.........
935s Initial hashing took: 0.001 seconds
935s Extracting anchors from hash-space.
935s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 93%.
935s Anchor extraction completed in: 0.002 seconds
935s Total anchors: 0
935s Anchor extraction + merge time: 0.002 seconds
935s Total processing time: 0.105 seconds
935s Writing anchors...
935s Total seeds used in anchors: 16
935s Hash performance:
935s  Keys used: 16 out of 16 possible (100.00%).
935s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
935s  Average pigeons per pigeon hole: 1
935s Writing 16 repeats...Output writing finished in: 0.001 seconds
935s Total time: 0.106 seconds
935s Murasaki finished!
935s PASSED MURASAKI
935s 
935s Testing Genepare on NZ_GG705112.fna
935s 18446744073709551404
935s PASSED GENEPARSE
935s 
935s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
935s Testing mbfa on NZ_GG705112.fna
935s PASSED mbfa
935s 
935s Test Murasaki on NZ_GG705113.fna
935s Verbosity level is: 0
935s Writing to: output/test
935s Pattern is: 101
935s Max usable hash bits: 27
935s Hit filter is: 0
935s Hash table type is: EcoHash
935s Hashing every: 1 base
935s Histogram detail is: 0
935s Hashing function is: 3
935s Collision profiling is: disabled
935s Repeats are: unmasked
935s Mergefilter is at: 100
935s Random seed: 1710370331 (automatic)
935s Bitscore output: on
935s Leave status records: no
935s Join neighbors is: off
935s Target memory is: 3.43 GB
935s Retain members is: true
935s Store repeatmap? yes
935s Reverse complement data is generated on the fly
935s Rifts allowed: 0
935s Fuzzy Extension: yes
935s Score by minimum pair: yes
935s Gapped anchors: no
935s Large sequence support is: enabled => seqpos is 8 bytes
935s Murasaki version 1.68.6 (LARGESEQ)
935s Loading NZ_GG705113.fna
935s Read 776bp (776 bytesp) in 0.000 seconds (1.6 MBp/s)
935s Done with forward strand (776bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705113.fna loaded. 776 bytes
935s Loading NZ_GG705113.gbk
935s Read 776bp (776 bytesp) in 0.000 seconds (2.7 MBp/s)
935s Done with forward strand (776bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705113.gbk loaded. 776 bytes
935s Sequence loading took: 0.001 seconds
935s Forward frequencies:  A:27.3196%  C:23.7113%  G:22.6804%  T:26.2887%
935s Global base frequencies:  A/T:53.6082%  C/G:46.3918%
935s Pat: 3 bases long with weight 2
935s    1 101 
935s Computing hash parameters...
935s Using 4 hashbits
935s  0%......... (T -0.091 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.079 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.069 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 91%........
935s Acceptable hash function found after 1000 cycles.
935s Best uses 2/2 bases and has 0 empties from 2 inputs.
935s Score: 0.96875 (cf. worst: -4.51562)
935s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
935s Total correlation penalty: 0
935s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
935s                                             10
935s                                             ==
935s w[ 0]>>29:                                 -.C
935s w[ 0]>>30:                                  A.-
935s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
935s Ecolist (optimistic): Expcted entries per list: 8
935s Ecolist (optimistic): Minimum chunks per list: 4
935s Would take minimum 256.000000 bytes to make perfect hash.
935s Hashing 3.03 KB of sequence requires: 
935s  ~ linear (in seq length) hashing cost of 4.93 KB
935s  ~ linear (in seq length) expected anchor cost of 72.75 KB
935s Initial hash table uses: 256 bytes (4 bits, 16 entries)
935s Expected memory usage (without anchors): 5.18 KB
935s Expected memory usage (with anchors): 77.93 KB
935s Hash parameters computed in 0.100 seconds
935s Creating storage structures: 16 entries in 256 bytes space.
935s Storage structures created in: 0.000 seconds
935s 
935s Hashing NZ_GG705113.fna forwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%........
935s Hashing NZ_GG705113.fna backwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%........
935s Hashing NZ_GG705113.gbk forwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%........
935s Hashing NZ_GG705113.gbk backwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%........
935s Initial hashing took: 0.001 seconds
935s Extracting anchors from hash-space.
935s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 56%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 93%.
935s Anchor extraction completed in: 0.002 seconds
935s Total anchors: 0
935s Anchor extraction + merge time: 0.002 seconds
935s Total processing time: 0.105 seconds
935s Writing anchors...
935s Total seeds used in anchors: 16
935s Hash performance:
935s  Keys used: 16 out of 16 possible (100.00%).
935s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
935s  Average pigeons per pigeon hole: 1
935s Writing 16 repeats...Output writing finished in: 0.001 seconds
935s Total time: 0.105 seconds
935s Murasaki finished!
935s PASSED MURASAKI
935s 
935s Testing Genepare on NZ_GG705113.fna
935s 18446744073709551393
935s PASSED GENEPARSE
935s 
935s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
935s Testing mbfa on NZ_GG705113.fna
935s PASSED mbfa
935s 
935s Test Murasaki on NZ_GG705114.fna
935s Verbosity level is: 0
935s Writing to: output/test
935s Pattern is: 101
935s Max usable hash bits: 27
935s Hit filter is: 0
935s Hash table type is: EcoHash
935s Hashing every: 1 base
935s Histogram detail is: 0
935s Hashing function is: 3
935s Collision profiling is: disabled
935s Repeats are: unmasked
935s Mergefilter is at: 100
935s Random seed: 1710370331 (automatic)
935s Bitscore output: on
935s Leave status records: no
935s Join neighbors is: off
935s Target memory is: 3.43 GB
935s Retain members is: true
935s Store repeatmap? yes
935s Reverse complement data is generated on the fly
935s Rifts allowed: 0
935s Fuzzy Extension: yes
935s Score by minimum pair: yes
935s Gapped anchors: no
935s Large sequence support is: enabled => seqpos is 8 bytes
935s Murasaki version 1.68.6 (LARGESEQ)
935s Loading NZ_GG705114.fna
935s Read 713bp (713 bytesp) in 0.001 seconds (969.8 KBp/s)
935s Done with forward strand (713bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705114.fna loaded. 713 bytes
935s Loading NZ_GG705114.gbk
935s Read 713bp (713 bytesp) in 0.000 seconds (2.5 MBp/s)
935s Done with forward strand (713bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705114.gbk loaded. 713 bytes
935s Sequence loading took: 0.001 seconds
935s Forward frequencies:  A:27.3492%  C:13.0435%  G:17.2511%  T:42.3562%
935s Global base frequencies:  A/T:69.7055%  C/G:30.2945%
935s Pat: 3 bases long with weight 2
935s    1 101 
935s Computing hash parameters...
935s Using 4 hashbits
935s  0%......... (T -0.092 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.080 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 91%........
935s Acceptable hash function found after 1000 cycles.
935s Best uses 2/2 bases and has 0 empties from 2 inputs.
935s Score: 0.96875 (cf. worst: -4.51562)
935s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
935s Total correlation penalty: 0
935s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
935s                                             10
935s                                             ==
935s w[ 0]>>29:                                 -.C
935s w[ 0]>>30:                                  A.-
935s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
935s Ecolist (optimistic): Expcted entries per list: 8
935s Ecolist (optimistic): Minimum chunks per list: 4
935s Would take minimum 256.000000 bytes to make perfect hash.
935s Hashing 2.79 KB of sequence requires: 
935s  ~ linear (in seq length) hashing cost of 4.52 KB
935s  ~ linear (in seq length) expected anchor cost of 66.84 KB
935s Initial hash table uses: 256 bytes (4 bits, 16 entries)
935s Expected memory usage (without anchors): 4.77 KB
935s Expected memory usage (with anchors): 71.61 KB
935s Hash parameters computed in 0.101 seconds
935s Creating storage structures: 16 entries in 256 bytes space.
935s Storage structures created in: 0.000 seconds
935s 
935s Hashing NZ_GG705114.fna forwards
935s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 91%.......
935s Hashing NZ_GG705114.fna backwards
935s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 91%.......
935s Hashing NZ_GG705114.gbk forwards
935s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 91%.......
935s Hashing NZ_GG705114.gbk backwards
935s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 91%.......
935s Initial hashing took: 0.001 seconds
935s Extracting anchors from hash-space.
935s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:11 2024
935s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 93%.
935s Anchor extraction completed in: 0.002 seconds
935s Total anchors: 0
935s Anchor extraction + merge time: 0.002 seconds
935s Total processing time: 0.105 seconds
935s Writing anchors...
935s Total seeds used in anchors: 16
935s Hash performance:
935s  Keys used: 16 out of 16 possible (100.00%).
935s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
935s  Average pigeons per pigeon hole: 1
935s Writing 16 repeats...Output writing finished in: 0.001 seconds
935s Total time: 0.106 seconds
935s Murasaki finished!
935s PASSED MURASAKI
935s 
935s Testing Genepare on NZ_GG705114.fna
935s 18446744073709551330
935s PASSED GENEPARSE
935s 
935s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
935s Testing mbfa on NZ_GG705114.fna
935s PASSED mbfa
935s 
935s Test Murasaki on NZ_GG705115.fna
935s Verbosity level is: 0
935s Writing to: output/test
935s Pattern is: 101
935s Max usable hash bits: 27
935s Hit filter is: 0
935s Hash table type is: EcoHash
935s Hashing every: 1 base
935s Histogram detail is: 0
935s Hashing function is: 3
935s Collision profiling is: disabled
935s Repeats are: unmasked
935s Mergefilter is at: 100
935s Random seed: 1710370331 (automatic)
935s Bitscore output: on
935s Leave status records: no
935s Join neighbors is: off
935s Target memory is: 3.43 GB
935s Retain members is: true
935s Store repeatmap? yes
935s Reverse complement data is generated on the fly
935s Rifts allowed: 0
935s Fuzzy Extension: yes
935s Score by minimum pair: yes
935s Gapped anchors: no
935s Large sequence support is: enabled => seqpos is 8 bytes
935s Murasaki version 1.68.6 (LARGESEQ)
935s Loading NZ_GG705115.fna
935s Read 687bp (687 bytesp) in 0.001 seconds (1.2 MBp/s)
935s Done with forward strand (687bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705115.fna loaded. 687 bytes
935s Loading NZ_GG705115.gbk
935s Read 687bp (687 bytesp) in 0.000 seconds (2.5 MBp/s)
935s Done with forward strand (687bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705115.gbk loaded. 687 bytes
935s Sequence loading took: 0.001 seconds
935s Forward frequencies:  A:36.3901%  C:17.6128%  G:19.5051%  T:26.492%
935s Global base frequencies:  A/T:62.8821%  C/G:37.1179%
935s Pat: 3 bases long with weight 2
935s    1 101 
935s Computing hash parameters...
935s Using 4 hashbits
935s  0%......... (T -0.092 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.081 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 91%........
935s Acceptable hash function found after 1000 cycles.
935s Best uses 2/2 bases and has 0 empties from 2 inputs.
935s Score: 0.96875 (cf. worst: -4.51562)
935s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
935s Total correlation penalty: 0
935s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
935s                                             10
935s                                             ==
935s w[ 0]>>29:                                 -.C
935s w[ 0]>>30:                                  A.-
935s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
935s Ecolist (optimistic): Expcted entries per list: 8
935s Ecolist (optimistic): Minimum chunks per list: 4
935s Would take minimum 256.000000 bytes to make perfect hash.
935s Hashing 2.68 KB of sequence requires: 
935s  ~ linear (in seq length) hashing cost of 4.35 KB
935s  ~ linear (in seq length) expected anchor cost of 64.41 KB
935s Initial hash table uses: 256 bytes (4 bits, 16 entries)
935s Expected memory usage (without anchors): 4.60 KB
935s Expected memory usage (with anchors): 69.01 KB
935s Hash parameters computed in 0.102 seconds
935s Creating storage structures: 16 entries in 256 bytes space.
935s Storage structures created in: 0.000 seconds
935s 
935s Hashing NZ_GG705115.fna forwards
935s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%........
935s Hashing NZ_GG705115.fna backwards
935s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%........
935s Hashing NZ_GG705115.gbk forwards
935s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%........
935s Hashing NZ_GG705115.gbk backwards
935s  0%......... (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 90%........
935s Initial hashing took: 0.005 seconds
935s Extracting anchors from hash-space.
935s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
935s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 93%.
935s Anchor extraction completed in: 0.002 seconds
935s Total anchors: 0
935s Anchor extraction + merge time: 0.002 seconds
935s Total processing time: 0.111 seconds
935s Writing anchors...
935s Total seeds used in anchors: 16
935s Hash performance:
935s  Keys used: 16 out of 16 possible (100.00%).
935s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
935s  Average pigeons per pigeon hole: 1
935s Writing 16 repeats...Output writing finished in: 0.001 seconds
935s Total time: 0.112 seconds
935s Murasaki finished!
935s PASSED MURASAKI
935s 
935s Testing Genepare on NZ_GG705115.fna
935s 18446744073709551304
935s PASSED GENEPARSE
935s 
935s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
935s Testing mbfa on NZ_GG705115.fna
935s PASSED mbfa
935s 
935s Test Murasaki on NZ_GG705116.fna
935s Verbosity level is: 0
935s Writing to: output/test
935s Pattern is: 101
935s Max usable hash bits: 27
935s Hit filter is: 0
935s Hash table type is: EcoHash
935s Hashing every: 1 base
935s Histogram detail is: 0
935s Hashing function is: 3
935s Collision profiling is: disabled
935s Repeats are: unmasked
935s Mergefilter is at: 100
935s Random seed: 1710370331 (automatic)
935s Bitscore output: on
935s Leave status records: no
935s Join neighbors is: off
935s Target memory is: 3.43 GB
935s Retain members is: true
935s Store repeatmap? yes
935s Reverse complement data is generated on the fly
935s Rifts allowed: 0
935s Fuzzy Extension: yes
935s Score by minimum pair: yes
935s Gapped anchors: no
935s Large sequence support is: enabled => seqpos is 8 bytes
935s Murasaki version 1.68.6 (LARGESEQ)
935s Loading NZ_GG705116.fna
935s Read 687bp (687 bytesp) in 0.000 seconds (1.4 MBp/s)
935s Done with forward strand (687bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705116.fna loaded. 687 bytes
935s Loading NZ_GG705116.gbk
935s Read 687bp (687 bytesp) in 0.000 seconds (2.9 MBp/s)
935s Done with forward strand (687bp). Preparing reverse complement...
935s  <-> Reversing metdata.
935s Done.
935s Seq NZ_GG705116.gbk loaded. 687 bytes
935s Sequence loading took: 0.001 seconds
935s Forward frequencies:  A:36.3901%  C:18.0495%  G:19.7962%  T:25.7642%
935s Global base frequencies:  A/T:62.1543%  C/G:37.8457%
935s Pat: 3 bases long with weight 2
935s    1 101 
935s Computing hash parameters...
935s Using 4 hashbits
935s  0%......... (T -0.090 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 10%......... (T -0.080 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:11 2024
935s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 91%........
936s Acceptable hash function found after 1000 cycles.
936s Best uses 2/2 bases and has 0 empties from 2 inputs.
936s Score: 0.96875 (cf. worst: -4.51562)
936s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
936s Total correlation penalty: 0
936s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
936s                                             10
936s                                             ==
936s w[ 0]>>29:                                 -.C
936s w[ 0]>>30:                                  A.-
936s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
936s Ecolist (optimistic): Expcted entries per list: 8
936s Ecolist (optimistic): Minimum chunks per list: 4
936s Would take minimum 256.000000 bytes to make perfect hash.
936s Hashing 2.68 KB of sequence requires: 
936s  ~ linear (in seq length) hashing cost of 4.35 KB
936s  ~ linear (in seq length) expected anchor cost of 64.41 KB
936s Initial hash table uses: 256 bytes (4 bits, 16 entries)
936s Expected memory usage (without anchors): 4.60 KB
936s Expected memory usage (with anchors): 69.01 KB
936s Hash parameters computed in 0.101 seconds
936s Creating storage structures: 16 entries in 256 bytes space.
936s Storage structures created in: 0.000 seconds
936s 
936s Hashing NZ_GG705116.fna forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 90%........
936s Hashing NZ_GG705116.fna backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 90%........
936s Hashing NZ_GG705116.gbk forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 90%........
936s Hashing NZ_GG705116.gbk backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 90%........
936s Initial hashing took: 0.002 seconds
936s Extracting anchors from hash-space.
936s  (T -0.003 seconds) ETA: Wed Mar 13 22:52:11 2024
936s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:11 2024
936s 93%.
936s Anchor extraction completed in: 0.002 seconds
936s Total anchors: 0
936s Anchor extraction + merge time: 0.002 seconds
936s Total processing time: 0.106 seconds
936s Writing anchors...
936s Total seeds used in anchors: 16
936s Hash performance:
936s  Keys used: 16 out of 16 possible (100.00%).
936s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
936s  Average pigeons per pigeon hole: 1
936s Writing 16 repeats...Output writing finished in: 0.001 seconds
936s Total time: 0.107 seconds
936s Murasaki finished!
936s PASSED MURASAKI
936s 
936s Testing Genepare on NZ_GG705116.fna
936s 18446744073709551304
936s PASSED GENEPARSE
936s 
936s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
936s Testing mbfa on NZ_GG705116.fna
936s PASSED mbfa
936s 
936s Test Murasaki on NZ_GG705117.fna
936s Verbosity level is: 0
936s Writing to: output/test
936s Pattern is: 101
936s Max usable hash bits: 27
936s Hit filter is: 0
936s Hash table type is: EcoHash
936s Hashing every: 1 base
936s Histogram detail is: 0
936s Hashing function is: 3
936s Collision profiling is: disabled
936s Repeats are: unmasked
936s Mergefilter is at: 100
936s Random seed: 1710370332 (automatic)
936s Bitscore output: on
936s Leave status records: no
936s Join neighbors is: off
936s Target memory is: 3.43 GB
936s Retain members is: true
936s Store repeatmap? yes
936s Reverse complement data is generated on the fly
936s Rifts allowed: 0
936s Fuzzy Extension: yes
936s Score by minimum pair: yes
936s Gapped anchors: no
936s Large sequence support is: enabled => seqpos is 8 bytes
936s Murasaki version 1.68.6 (LARGESEQ)
936s Loading NZ_GG705117.fna
936s Read 678bp (678 bytesp) in 0.001 seconds (968.0 KBp/s)
936s Done with forward strand (678bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705117.fna loaded. 678 bytes
936s Loading NZ_GG705117.gbk
936s Read 678bp (678 bytesp) in 0.000 seconds (2.1 MBp/s)
936s Done with forward strand (678bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705117.gbk loaded. 678 bytes
936s Sequence loading took: 0.001 seconds
936s Forward frequencies:  A:30.3835%  C:19.6165%  G:13.7168%  T:36.2832%
936s Global base frequencies:  A/T:66.6667%  C/G:33.3333%
936s Pat: 3 bases long with weight 2
936s    1 101 
936s Computing hash parameters...
936s Using 4 hashbits
936s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 91%........
936s Acceptable hash function found after 1000 cycles.
936s Best uses 2/2 bases and has 0 empties from 2 inputs.
936s Score: 0.96875 (cf. worst: -4.51562)
936s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
936s Total correlation penalty: 0
936s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
936s                                             10
936s                                             ==
936s w[ 0]>>29:                                 -.C
936s w[ 0]>>30:                                  A.-
936s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
936s Ecolist (optimistic): Expcted entries per list: 8
936s Ecolist (optimistic): Minimum chunks per list: 4
936s Would take minimum 256.000000 bytes to make perfect hash.
936s Hashing 2.65 KB of sequence requires: 
936s  ~ linear (in seq length) hashing cost of 4.30 KB
936s  ~ linear (in seq length) expected anchor cost of 63.56 KB
936s Initial hash table uses: 256 bytes (4 bits, 16 entries)
936s Expected memory usage (without anchors): 4.55 KB
936s Expected memory usage (with anchors): 68.12 KB
936s Hash parameters computed in 0.103 seconds
936s Creating storage structures: 16 entries in 256 bytes space.
936s Storage structures created in: 0.000 seconds
936s 
936s Hashing NZ_GG705117.fna forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705117.fna backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705117.gbk forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705117.gbk backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Initial hashing took: 0.002 seconds
936s Extracting anchors from hash-space.
936s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 93%.
936s Anchor extraction completed in: 0.002 seconds
936s Total anchors: 0
936s Anchor extraction + merge time: 0.002 seconds
936s Total processing time: 0.108 seconds
936s Writing anchors...
936s Total seeds used in anchors: 16
936s Hash performance:
936s  Keys used: 16 out of 16 possible (100.00%).
936s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
936s  Average pigeons per pigeon hole: 1
936s Writing 16 repeats...Output writing finished in: 0.001 seconds
936s Total time: 0.109 seconds
936s Murasaki finished!
936s PASSED MURASAKI
936s 
936s Testing Genepare on NZ_GG705117.fna
936s 18446744073709551295
936s PASSED GENEPARSE
936s 
936s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
936s Testing mbfa on NZ_GG705117.fna
936s PASSED mbfa
936s 
936s Test Murasaki on NZ_GG705118.fna
936s Verbosity level is: 0
936s Writing to: output/test
936s Pattern is: 101
936s Max usable hash bits: 27
936s Hit filter is: 0
936s Hash table type is: EcoHash
936s Hashing every: 1 base
936s Histogram detail is: 0
936s Hashing function is: 3
936s Collision profiling is: disabled
936s Repeats are: unmasked
936s Mergefilter is at: 100
936s Random seed: 1710370332 (automatic)
936s Bitscore output: on
936s Leave status records: no
936s Join neighbors is: off
936s Target memory is: 3.43 GB
936s Retain members is: true
936s Store repeatmap? yes
936s Reverse complement data is generated on the fly
936s Rifts allowed: 0
936s Fuzzy Extension: yes
936s Score by minimum pair: yes
936s Gapped anchors: no
936s Large sequence support is: enabled => seqpos is 8 bytes
936s Murasaki version 1.68.6 (LARGESEQ)
936s Loading NZ_GG705118.fna
936s Read 665bp (665 bytesp) in 0.000 seconds (1.3 MBp/s)
936s Done with forward strand (665bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705118.fna loaded. 665 bytes
936s Loading NZ_GG705118.gbk
936s Read 665bp (665 bytesp) in 0.000 seconds (2.3 MBp/s)
936s Done with forward strand (665bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705118.gbk loaded. 665 bytes
936s Sequence loading took: 0.001 seconds
936s Forward frequencies:  A:28.7218%  C:21.8045%  G:23.609%  T:25.8647%
936s Global base frequencies:  A/T:54.5865%  C/G:45.4135%
936s Pat: 3 bases long with weight 2
936s    1 101 
936s Computing hash parameters...
936s Using 4 hashbits
936s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 91%........
936s Acceptable hash function found after 1000 cycles.
936s Best uses 2/2 bases and has 0 empties from 2 inputs.
936s Score: 0.96875 (cf. worst: -4.51562)
936s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
936s Total correlation penalty: 0
936s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
936s                                             10
936s                                             ==
936s w[ 0]>>29:                                 -.C
936s w[ 0]>>30:                                  A.-
936s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
936s Ecolist (optimistic): Expcted entries per list: 8
936s Ecolist (optimistic): Minimum chunks per list: 4
936s Would take minimum 256.000000 bytes to make perfect hash.
936s Hashing 2.60 KB of sequence requires: 
936s  ~ linear (in seq length) hashing cost of 4.21 KB
936s  ~ linear (in seq length) expected anchor cost of 62.34 KB
936s Initial hash table uses: 256 bytes (4 bits, 16 entries)
936s Expected memory usage (without anchors): 4.46 KB
936s Expected memory usage (with anchors): 66.81 KB
936s Hash parameters computed in 0.102 seconds
936s Creating storage structures: 16 entries in 256 bytes space.
936s Storage structures created in: 0.000 seconds
936s 
936s Hashing NZ_GG705118.fna forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705118.fna backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705118.gbk forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705118.gbk backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Initial hashing took: 0.002 seconds
936s Extracting anchors from hash-space.
936s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 93%.
936s Anchor extraction completed in: 0.001 seconds
936s Total anchors: 0
936s Anchor extraction + merge time: 0.001 seconds
936s Total processing time: 0.107 seconds
936s Writing anchors...
936s Total seeds used in anchors: 16
936s Hash performance:
936s  Keys used: 16 out of 16 possible (100.00%).
936s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
936s  Average pigeons per pigeon hole: 1
936s Writing 16 repeats...Output writing finished in: 0.001 seconds
936s Total time: 0.107 seconds
936s Murasaki finished!
936s PASSED MURASAKI
936s 
936s Testing Genepare on NZ_GG705118.fna
936s 18446744073709551282
936s PASSED GENEPARSE
936s 
936s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
936s Testing mbfa on NZ_GG705118.fna
936s PASSED mbfa
936s 
936s Test Murasaki on NZ_GG705119.fna
936s Verbosity level is: 0
936s Writing to: output/test
936s Pattern is: 101
936s Max usable hash bits: 27
936s Hit filter is: 0
936s Hash table type is: EcoHash
936s Hashing every: 1 base
936s Histogram detail is: 0
936s Hashing function is: 3
936s Collision profiling is: disabled
936s Repeats are: unmasked
936s Mergefilter is at: 100
936s Random seed: 1710370332 (automatic)
936s Bitscore output: on
936s Leave status records: no
936s Join neighbors is: off
936s Target memory is: 3.43 GB
936s Retain members is: true
936s Store repeatmap? yes
936s Reverse complement data is generated on the fly
936s Rifts allowed: 0
936s Fuzzy Extension: yes
936s Score by minimum pair: yes
936s Gapped anchors: no
936s Large sequence support is: enabled => seqpos is 8 bytes
936s Murasaki version 1.68.6 (LARGESEQ)
936s Loading NZ_GG705119.fna
936s Read 655bp (655 bytesp) in 0.001 seconds (1.2 MBp/s)
936s Done with forward strand (655bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705119.fna loaded. 655 bytes
936s Loading NZ_GG705119.gbk
936s Read 655bp (655 bytesp) in 0.000 seconds (1.9 MBp/s)
936s Done with forward strand (655bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705119.gbk loaded. 655 bytes
936s Sequence loading took: 0.001 seconds
936s Forward frequencies:  A:30.3817%  C:21.9847%  G:22.5954%  T:25.0382%
936s Global base frequencies:  A/T:55.4198%  C/G:44.5802%
936s Pat: 3 bases long with weight 2
936s    1 101 
936s Computing hash parameters...
936s Using 4 hashbits
936s  0%......... (T -0.095 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.063 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 91%........
936s Acceptable hash function found after 1000 cycles.
936s Best uses 2/2 bases and has 0 empties from 2 inputs.
936s Score: 0.96875 (cf. worst: -4.51562)
936s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
936s Total correlation penalty: 0
936s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
936s                                             10
936s                                             ==
936s w[ 0]>>29:                                 -.C
936s w[ 0]>>30:                                  A.-
936s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
936s Ecolist (optimistic): Expcted entries per list: 8
936s Ecolist (optimistic): Minimum chunks per list: 4
936s Would take minimum 256.000000 bytes to make perfect hash.
936s Hashing 2.56 KB of sequence requires: 
936s  ~ linear (in seq length) hashing cost of 4.15 KB
936s  ~ linear (in seq length) expected anchor cost of 61.41 KB
936s Initial hash table uses: 256 bytes (4 bits, 16 entries)
936s Expected memory usage (without anchors): 4.40 KB
936s Expected memory usage (with anchors): 65.81 KB
936s Hash parameters computed in 0.103 seconds
936s Creating storage structures: 16 entries in 256 bytes space.
936s Storage structures created in: 0.000 seconds
936s 
936s Hashing NZ_GG705119.fna forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705119.fna backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705119.gbk forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705119.gbk backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Initial hashing took: 0.002 seconds
936s Extracting anchors from hash-space.
936s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 93%.
936s Anchor extraction completed in: 0.001 seconds
936s Total anchors: 0
936s Anchor extraction + merge time: 0.001 seconds
936s Total processing time: 0.108 seconds
936s Writing anchors...
936s Total seeds used in anchors: 16
936s Hash performance:
936s  Keys used: 16 out of 16 possible (100.00%).
936s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
936s  Average pigeons per pigeon hole: 1
936s Writing 16 repeats...Output writing finished in: 0.001 seconds
936s Total time: 0.109 seconds
936s Murasaki finished!
936s PASSED MURASAKI
936s 
936s Testing Genepare on NZ_GG705119.fna
936s 18446744073709551272
936s PASSED GENEPARSE
936s 
936s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
936s Testing mbfa on NZ_GG705119.fna
936s PASSED mbfa
936s 
936s Test Murasaki on NZ_GG705120.fna
936s Verbosity level is: 0
936s Writing to: output/test
936s Pattern is: 101
936s Max usable hash bits: 27
936s Hit filter is: 0
936s Hash table type is: EcoHash
936s Hashing every: 1 base
936s Histogram detail is: 0
936s Hashing function is: 3
936s Collision profiling is: disabled
936s Repeats are: unmasked
936s Mergefilter is at: 100
936s Random seed: 1710370332 (automatic)
936s Bitscore output: on
936s Leave status records: no
936s Join neighbors is: off
936s Target memory is: 3.43 GB
936s Retain members is: true
936s Store repeatmap? yes
936s Reverse complement data is generated on the fly
936s Rifts allowed: 0
936s Fuzzy Extension: yes
936s Score by minimum pair: yes
936s Gapped anchors: no
936s Large sequence support is: enabled => seqpos is 8 bytes
936s Murasaki version 1.68.6 (LARGESEQ)
936s Loading NZ_GG705120.fna
936s Read 638bp (638 bytesp) in 0.000 seconds (1.3 MBp/s)
936s Done with forward strand (638bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705120.fna loaded. 638 bytes
936s Loading NZ_GG705120.gbk
936s Read 638bp (638 bytesp) in 0.000 seconds (2.2 MBp/s)
936s Done with forward strand (638bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705120.gbk loaded. 638 bytes
936s Sequence loading took: 0.001 seconds
936s Forward frequencies:  A:23.511%  C:22.7273%  G:24.9216%  T:28.8401%
936s Global base frequencies:  A/T:52.3511%  C/G:47.6489%
936s Pat: 3 bases long with weight 2
936s    1 101 
936s Computing hash parameters...
936s Using 4 hashbits
936s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 91%........
936s Acceptable hash function found after 1000 cycles.
936s Best uses 2/2 bases and has 0 empties from 2 inputs.
936s Score: 0.96875 (cf. worst: -4.51562)
936s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
936s Total correlation penalty: 0
936s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
936s                                             10
936s                                             ==
936s w[ 0]>>29:                                 -.C
936s w[ 0]>>30:                                  A.-
936s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
936s Ecolist (optimistic): Expcted entries per list: 8
936s Ecolist (optimistic): Minimum chunks per list: 4
936s Would take minimum 256.000000 bytes to make perfect hash.
936s Hashing 2.49 KB of sequence requires: 
936s  ~ linear (in seq length) hashing cost of 4.05 KB
936s  ~ linear (in seq length) expected anchor cost of 59.81 KB
936s Initial hash table uses: 256 bytes (4 bits, 16 entries)
936s Expected memory usage (without anchors): 4.30 KB
936s Expected memory usage (with anchors): 64.11 KB
936s Hash parameters computed in 0.102 seconds
936s Creating storage structures: 16 entries in 256 bytes space.
936s Storage structures created in: 0.000 seconds
936s 
936s Hashing NZ_GG705120.fna forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705120.fna backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705120.gbk forwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Hashing NZ_GG705120.gbk backwards
936s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 90%........
936s Initial hashing took: 0.002 seconds
936s Extracting anchors from hash-space.
936s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:12 2024
936s 93%.
936s Anchor extraction completed in: 0.001 seconds
936s Total anchors: 0
936s Anchor extraction + merge time: 0.001 seconds
936s Total processing time: 0.106 seconds
936s Writing anchors...
936s Total seeds used in anchors: 16
936s Hash performance:
936s  Keys used: 16 out of 16 possible (100.00%).
936s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
936s  Average pigeons per pigeon hole: 1
936s Writing 16 repeats...Output writing finished in: 0.001 seconds
936s Total time: 0.107 seconds
936s Murasaki finished!
936s PASSED MURASAKI
936s 
936s Testing Genepare on NZ_GG705120.fna
936s 18446744073709551255
936s PASSED GENEPARSE
936s 
936s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
936s Testing mbfa on NZ_GG705120.fna
936s PASSED mbfa
936s 
936s Test Murasaki on NZ_GG705121.fna
936s Verbosity level is: 0
936s Writing to: output/test
936s Pattern is: 101
936s Max usable hash bits: 27
936s Hit filter is: 0
936s Hash table type is: EcoHash
936s Hashing every: 1 base
936s Histogram detail is: 0
936s Hashing function is: 3
936s Collision profiling is: disabled
936s Repeats are: unmasked
936s Mergefilter is at: 100
936s Random seed: 1710370332 (automatic)
936s Bitscore output: on
936s Leave status records: no
936s Join neighbors is: off
936s Target memory is: 3.43 GB
936s Retain members is: true
936s Store repeatmap? yes
936s Reverse complement data is generated on the fly
936s Rifts allowed: 0
936s Fuzzy Extension: yes
936s Score by minimum pair: yes
936s Gapped anchors: no
936s Large sequence support is: enabled => seqpos is 8 bytes
936s Murasaki version 1.68.6 (LARGESEQ)
936s Loading NZ_GG705121.fna
936s Read 615bp (615 bytesp) in 0.000 seconds (1.2 MBp/s)
936s Done with forward strand (615bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705121.fna loaded. 615 bytes
936s Loading NZ_GG705121.gbk
936s Read 615bp (615 bytesp) in 0.000 seconds (2.3 MBp/s)
936s Done with forward strand (615bp). Preparing reverse complement...
936s  <-> Reversing metdata.
936s Done.
936s Seq NZ_GG705121.gbk loaded. 615 bytes
936s Sequence loading took: 0.001 seconds
936s Forward frequencies:  A:33.8211%  C:18.374%  G:17.8862%  T:29.9187%
936s Global base frequencies:  A/T:63.7398%  C/G:36.2602%
936s Pat: 3 bases long with weight 2
936s    1 101 
936s Computing hash parameters...
936s Using 4 hashbits
936s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:13 2024
936s 10%......... (T -0.083 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%........
937s Acceptable hash function found after 1000 cycles.
937s Best uses 2/2 bases and has 0 empties from 2 inputs.
937s Score: 0.96875 (cf. worst: -4.51562)
937s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
937s Total correlation penalty: 0
937s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
937s                                             10
937s                                             ==
937s w[ 0]>>29:                                 -.C
937s w[ 0]>>30:                                  A.-
937s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
937s Ecolist (optimistic): Expcted entries per list: 8
937s Ecolist (optimistic): Minimum chunks per list: 4
937s Would take minimum 256.000000 bytes to make perfect hash.
937s Hashing 2.40 KB of sequence requires: 
937s  ~ linear (in seq length) hashing cost of 3.90 KB
937s  ~ linear (in seq length) expected anchor cost of 57.66 KB
937s Initial hash table uses: 256 bytes (4 bits, 16 entries)
937s Expected memory usage (without anchors): 4.15 KB
937s Expected memory usage (with anchors): 61.80 KB
937s Hash parameters computed in 0.102 seconds
937s Creating storage structures: 16 entries in 256 bytes space.
937s Storage structures created in: 0.000 seconds
937s 
937s Hashing NZ_GG705121.fna forwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 80%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705121.fna backwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 80%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705121.gbk forwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 80%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705121.gbk backwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 80%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Initial hashing took: 0.004 seconds
937s Extracting anchors from hash-space.
937s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 93%.
937s Anchor extraction completed in: 0.001 seconds
937s Total anchors: 0
937s Anchor extraction + merge time: 0.001 seconds
937s Total processing time: 0.109 seconds
937s Writing anchors...
937s Total seeds used in anchors: 16
937s Hash performance:
937s  Keys used: 16 out of 16 possible (100.00%).
937s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
937s  Average pigeons per pigeon hole: 1
937s Writing 16 repeats...Output writing finished in: 0.001 seconds
937s Total time: 0.110 seconds
937s Murasaki finished!
937s PASSED MURASAKI
937s 
937s Testing Genepare on NZ_GG705121.fna
937s 18446744073709551232
937s PASSED GENEPARSE
937s 
937s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
937s Testing mbfa on NZ_GG705121.fna
937s PASSED mbfa
937s 
937s Test Murasaki on NZ_GG705122.fna
937s Verbosity level is: 0
937s Writing to: output/test
937s Pattern is: 101
937s Max usable hash bits: 27
937s Hit filter is: 0
937s Hash table type is: EcoHash
937s Hashing every: 1 base
937s Histogram detail is: 0
937s Hashing function is: 3
937s Collision profiling is: disabled
937s Repeats are: unmasked
937s Mergefilter is at: 100
937s Random seed: 1710370333 (automatic)
937s Bitscore output: on
937s Leave status records: no
937s Join neighbors is: off
937s Target memory is: 3.43 GB
937s Retain members is: true
937s Store repeatmap? yes
937s Reverse complement data is generated on the fly
937s Rifts allowed: 0
937s Fuzzy Extension: yes
937s Score by minimum pair: yes
937s Gapped anchors: no
937s Large sequence support is: enabled => seqpos is 8 bytes
937s Murasaki version 1.68.6 (LARGESEQ)
937s Loading NZ_GG705122.fna
937s Read 603bp (603 bytesp) in 0.000 seconds (1.2 MBp/s)
937s Done with forward strand (603bp). Preparing reverse complement...
937s  <-> Reversing metdata.
937s Done.
937s Seq NZ_GG705122.fna loaded. 603 bytes
937s Loading NZ_GG705122.gbk
937s Read 603bp (603 bytesp) in 0.000 seconds (2.1 MBp/s)
937s Done with forward strand (603bp). Preparing reverse complement...
937s  <-> Reversing metdata.
937s Done.
937s Seq NZ_GG705122.gbk loaded. 603 bytes
937s Sequence loading took: 0.001 seconds
937s Forward frequencies:  A:30.8458%  C:18.2421%  G:20.8955%  T:30.0166%
937s Global base frequencies:  A/T:60.8624%  C/G:39.1376%
937s Pat: 3 bases long with weight 2
937s    1 101 
937s Computing hash parameters...
937s Using 4 hashbits
937s  0%......... (T -0.089 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%......... (T -0.080 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%........
937s Acceptable hash function found after 1000 cycles.
937s Best uses 2/2 bases and has 0 empties from 2 inputs.
937s Score: 0.96875 (cf. worst: -4.51562)
937s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
937s Total correlation penalty: 0
937s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
937s                                             10
937s                                             ==
937s w[ 0]>>29:                                 -.C
937s w[ 0]>>30:                                  A.-
937s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
937s Ecolist (optimistic): Expcted entries per list: 8
937s Ecolist (optimistic): Minimum chunks per list: 4
937s Would take minimum 256.000000 bytes to make perfect hash.
937s Hashing 2.36 KB of sequence requires: 
937s  ~ linear (in seq length) hashing cost of 3.82 KB
937s  ~ linear (in seq length) expected anchor cost of 56.53 KB
937s Initial hash table uses: 256 bytes (4 bits, 16 entries)
937s Expected memory usage (without anchors): 4.07 KB
937s Expected memory usage (with anchors): 60.60 KB
937s Hash parameters computed in 0.102 seconds
937s Creating storage structures: 16 entries in 256 bytes space.
937s Storage structures created in: 0.000 seconds
937s 
937s Hashing NZ_GG705122.fna forwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705122.fna backwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705122.gbk forwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705122.gbk backwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Initial hashing took: 0.002 seconds
937s Extracting anchors from hash-space.
937s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 43%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 93%.
937s Anchor extraction completed in: 0.001 seconds
937s Total anchors: 0
937s Anchor extraction + merge time: 0.001 seconds
937s Total processing time: 0.106 seconds
937s Writing anchors...
937s Total seeds used in anchors: 16
937s Hash performance:
937s  Keys used: 16 out of 16 possible (100.00%).
937s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
937s  Average pigeons per pigeon hole: 1
937s Writing 16 repeats...Output writing finished in: 0.001 seconds
937s Total time: 0.107 seconds
937s Murasaki finished!
937s PASSED MURASAKI
937s 
937s Testing Genepare on NZ_GG705122.fna
937s 18446744073709551220
937s PASSED GENEPARSE
937s 
937s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
937s Testing mbfa on NZ_GG705122.fna
937s PASSED mbfa
937s 
937s Test Murasaki on NZ_GG705123.fna
937s Verbosity level is: 0
937s Writing to: output/test
937s Pattern is: 101
937s Max usable hash bits: 27
937s Hit filter is: 0
937s Hash table type is: EcoHash
937s Hashing every: 1 base
937s Histogram detail is: 0
937s Hashing function is: 3
937s Collision profiling is: disabled
937s Repeats are: unmasked
937s Mergefilter is at: 100
937s Random seed: 1710370333 (automatic)
937s Bitscore output: on
937s Leave status records: no
937s Join neighbors is: off
937s Target memory is: 3.43 GB
937s Retain members is: true
937s Store repeatmap? yes
937s Reverse complement data is generated on the fly
937s Rifts allowed: 0
937s Fuzzy Extension: yes
937s Score by minimum pair: yes
937s Gapped anchors: no
937s Large sequence support is: enabled => seqpos is 8 bytes
937s Murasaki version 1.68.6 (LARGESEQ)
937s Loading NZ_GG705123.fna
937s Read 603bp (603 bytesp) in 0.001 seconds (1.1 MBp/s)
937s Done with forward strand (603bp). Preparing reverse complement...
937s  <-> Reversing metdata.
937s Done.
937s Seq NZ_GG705123.fna loaded. 603 bytes
937s Loading NZ_GG705123.gbk
937s Read 603bp (603 bytesp) in 0.000 seconds (1.9 MBp/s)
937s Done with forward strand (603bp). Preparing reverse complement...
937s  <-> Reversing metdata.
937s Done.
937s Seq NZ_GG705123.gbk loaded. 603 bytes
937s Sequence loading took: 0.001 seconds
937s Forward frequencies:  A:30.6799%  C:18.0763%  G:20.5638%  T:30.6799%
937s Global base frequencies:  A/T:61.3599%  C/G:38.6401%
937s Pat: 3 bases long with weight 2
937s    1 101 
937s Computing hash parameters...
937s Using 4 hashbits
937s  0%......... (T -0.091 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%......... (T -0.080 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%........
937s Acceptable hash function found after 1000 cycles.
937s Best uses 2/2 bases and has 0 empties from 2 inputs.
937s Score: 0.96875 (cf. worst: -4.51562)
937s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
937s Total correlation penalty: 0
937s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
937s                                             10
937s                                             ==
937s w[ 0]>>29:                                 -.C
937s w[ 0]>>30:                                  A.-
937s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
937s Ecolist (optimistic): Expcted entries per list: 8
937s Ecolist (optimistic): Minimum chunks per list: 4
937s Would take minimum 256.000000 bytes to make perfect hash.
937s Hashing 2.36 KB of sequence requires: 
937s  ~ linear (in seq length) hashing cost of 3.82 KB
937s  ~ linear (in seq length) expected anchor cost of 56.53 KB
937s Initial hash table uses: 256 bytes (4 bits, 16 entries)
937s Expected memory usage (without anchors): 4.07 KB
937s Expected memory usage (with anchors): 60.60 KB
937s Hash parameters computed in 0.101 seconds
937s Creating storage structures: 16 entries in 256 bytes space.
937s Storage structures created in: 0.000 seconds
937s 
937s Hashing NZ_GG705123.fna forwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705123.fna backwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705123.gbk forwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Hashing NZ_GG705123.gbk backwards
937s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 91%.......
937s Initial hashing took: 0.002 seconds
937s Extracting anchors from hash-space.
937s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:13 2024
937s 93%.
937s Anchor extraction completed in: 0.001 seconds
937s Total anchors: 0
937s Anchor extraction + merge time: 0.001 seconds
937s Total processing time: 0.106 seconds
937s Writing anchors...
937s Total seeds used in anchors: 16
937s Hash performance:
937s  Keys used: 16 out of 16 possible (100.00%).
937s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
937s  Average pigeons per pigeon hole: 1
937s Writing 16 repeats...Output writing finished in: 0.001 seconds
937s Total time: 0.107 seconds
937s Murasaki finished!
937s PASSED MURASAKI
937s 
937s Testing Genepare on NZ_GG705123.fna
937s 18446744073709551220
937s PASSED GENEPARSE
937s 
937s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
937s Testing mbfa on NZ_GG705123.fna
937s PASSED mbfa
937s 
937s Test Murasaki on NZ_GG705124.fna
937s Verbosity level is: 0
937s Writing to: output/test
937s Pattern is: 101
937s Max usable hash bits: 27
937s Hit filter is: 0
937s Hash table type is: EcoHash
937s Hashing every: 1 base
937s Histogram detail is: 0
937s Hashing function is: 3
937s Collision profiling is: disabled
937s Repeats are: unmasked
937s Mergefilter is at: 100
937s Random seed: 1710370333 (automatic)
937s Bitscore output: on
937s Leave status records: no
937s Join neighbors is: off
937s Target memory is: 3.43 GB
937s Retain members is: true
937s Store repeatmap? yes
937s Reverse complement data is generated on the fly
937s Rifts allowed: 0
937s Fuzzy Extension: yes
937s Score by minimum pair: yes
937s Gapped anchors: no
937s Large sequence support is: enabled => seqpos is 8 bytes
937s Murasaki version 1.68.6 (LARGESEQ)
937s Loading NZ_GG705124.fna
937s Read 597bp (597 bytesp) in 0.001 seconds (1022.8 KBp/s)
937s Done with forward strand (597bp). Preparing reverse complement...
937s  <-> Reversing metdata.
937s Done.
937s Seq NZ_GG705124.fna loaded. 597 bytes
937s Loading NZ_GG705124.gbk
937s Read 597bp (597 bytesp) in 0.000 seconds (1.8 MBp/s)
937s Done with forward strand (597bp). Preparing reverse complement...
937s  <-> Reversing metdata.
937s Done.
937s Seq NZ_GG705124.gbk loaded. 597 bytes
937s Sequence loading took: 0.001 seconds
937s Forward frequencies:  A:38.6935%  C:10.8878%  G:20.268%  T:30.1508%
937s Global base frequencies:  A/T:68.8442%  C/G:31.1558%
937s Pat: 3 bases long with weight 2
937s    1 101 
937s Computing hash parameters...
937s Using 4 hashbits
937s  0%......... (T -0.090 seconds) ETA: Wed Mar 13 22:52:14 2024
937s 10%......... (T -0.080 seconds) ETA: Wed Mar 13 22:52:14 2024
937s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:14 2024
937s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 91%........
938s Acceptable hash function found after 1000 cycles.
938s Best uses 2/2 bases and has 0 empties from 2 inputs.
938s Score: 0.96875 (cf. worst: -4.51562)
938s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
938s Total correlation penalty: 0
938s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
938s                                             10
938s                                             ==
938s w[ 0]>>29:                                 -.C
938s w[ 0]>>30:                                  A.-
938s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
938s Ecolist (optimistic): Expcted entries per list: 8
938s Ecolist (optimistic): Minimum chunks per list: 4
938s Would take minimum 256.000000 bytes to make perfect hash.
938s Hashing 2.33 KB of sequence requires: 
938s  ~ linear (in seq length) hashing cost of 3.78 KB
938s  ~ linear (in seq length) expected anchor cost of 55.97 KB
938s Initial hash table uses: 256 bytes (4 bits, 16 entries)
938s Expected memory usage (without anchors): 4.03 KB
938s Expected memory usage (with anchors): 60.00 KB
938s Hash parameters computed in 0.103 seconds
938s Creating storage structures: 16 entries in 256 bytes space.
938s Storage structures created in: 0.000 seconds
938s 
938s Hashing NZ_GG705124.fna forwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705124.fna backwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705124.gbk forwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705124.gbk backwards
938s  0%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Initial hashing took: 0.002 seconds
938s Extracting anchors from hash-space.
938s  (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 43%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 93%.
938s Anchor extraction completed in: 0.001 seconds
938s Total anchors: 0
938s Anchor extraction + merge time: 0.001 seconds
938s Total processing time: 0.107 seconds
938s Writing anchors...
938s Total seeds used in anchors: 16
938s Hash performance:
938s  Keys used: 16 out of 16 possible (100.00%).
938s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
938s  Average pigeons per pigeon hole: 1
938s Writing 16 repeats...Output writing finished in: 0.001 seconds
938s Total time: 0.108 seconds
938s Murasaki finished!
938s PASSED MURASAKI
938s 
938s Testing Genepare on NZ_GG705124.fna
938s 18446744073709551214
938s PASSED GENEPARSE
938s 
938s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
938s Testing mbfa on NZ_GG705124.fna
938s PASSED mbfa
938s 
938s Test Murasaki on NZ_GG705125.fna
938s Verbosity level is: 0
938s Writing to: output/test
938s Pattern is: 101
938s Max usable hash bits: 27
938s Hit filter is: 0
938s Hash table type is: EcoHash
938s Hashing every: 1 base
938s Histogram detail is: 0
938s Hashing function is: 3
938s Collision profiling is: disabled
938s Repeats are: unmasked
938s Mergefilter is at: 100
938s Random seed: 1710370334 (automatic)
938s Bitscore output: on
938s Leave status records: no
938s Join neighbors is: off
938s Target memory is: 3.43 GB
938s Retain members is: true
938s Store repeatmap? yes
938s Reverse complement data is generated on the fly
938s Rifts allowed: 0
938s Fuzzy Extension: yes
938s Score by minimum pair: yes
938s Gapped anchors: no
938s Large sequence support is: enabled => seqpos is 8 bytes
938s Murasaki version 1.68.6 (LARGESEQ)
938s Loading NZ_GG705125.fna
938s Read 583bp (583 bytesp) in 0.001 seconds (916.8 KBp/s)
938s Done with forward strand (583bp). Preparing reverse complement...
938s  <-> Reversing metdata.
938s Done.
938s Seq NZ_GG705125.fna loaded. 583 bytes
938s Loading NZ_GG705125.gbk
938s Read 583bp (583 bytesp) in 0.000 seconds (2.0 MBp/s)
938s Done with forward strand (583bp). Preparing reverse complement...
938s  <-> Reversing metdata.
938s Done.
938s Seq NZ_GG705125.gbk loaded. 583 bytes
938s Sequence loading took: 0.001 seconds
938s Forward frequencies:  A:27.7873%  C:20.5832%  G:18.8679%  T:32.7616%
938s Global base frequencies:  A/T:60.5489%  C/G:39.4511%
938s Pat: 3 bases long with weight 2
938s    1 101 
938s Computing hash parameters...
938s Using 4 hashbits
938s  0%......... (T -0.090 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.080 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.070 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.060 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.050 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 91%........
938s Acceptable hash function found after 1000 cycles.
938s Best uses 2/2 bases and has 0 empties from 2 inputs.
938s Score: 0.96875 (cf. worst: -4.51562)
938s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
938s Total correlation penalty: 0
938s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
938s                                             10
938s                                             ==
938s w[ 0]>>29:                                 -.C
938s w[ 0]>>30:                                  A.-
938s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
938s Ecolist (optimistic): Expcted entries per list: 8
938s Ecolist (optimistic): Minimum chunks per list: 4
938s Would take minimum 256.000000 bytes to make perfect hash.
938s Hashing 2.28 KB of sequence requires: 
938s  ~ linear (in seq length) hashing cost of 3.69 KB
938s  ~ linear (in seq length) expected anchor cost of 54.66 KB
938s Initial hash table uses: 256 bytes (4 bits, 16 entries)
938s Expected memory usage (without anchors): 3.94 KB
938s Expected memory usage (with anchors): 58.60 KB
938s Hash parameters computed in 0.100 seconds
938s Creating storage structures: 16 entries in 256 bytes space.
938s Storage structures created in: 0.000 seconds
938s 
938s Hashing NZ_GG705125.fna forwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 71%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 91%........
938s Hashing NZ_GG705125.fna backwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 71%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 91%........
938s Hashing NZ_GG705125.gbk forwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 71%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 91%........
938s Hashing NZ_GG705125.gbk backwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 71%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 81%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 91%........
938s Initial hashing took: 0.001 seconds
938s Extracting anchors from hash-space.
938s  (T -0.002 seconds) ETA: Wed Mar 13 22:52:14 2024
938s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 93%.
938s Anchor extraction completed in: 0.001 seconds
938s Total anchors: 0
938s Anchor extraction + merge time: 0.001 seconds
938s Total processing time: 0.105 seconds
938s Writing anchors...
938s Total seeds used in anchors: 16
938s Hash performance:
938s  Keys used: 16 out of 16 possible (100.00%).
938s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
938s  Average pigeons per pigeon hole: 1
938s Writing 16 repeats...Output writing finished in: 0.001 seconds
938s Total time: 0.106 seconds
938s Murasaki finished!
938s PASSED MURASAKI
938s 
938s Testing Genepare on NZ_GG705125.fna
938s 18446744073709551200
938s PASSED GENEPARSE
938s 
938s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
938s Testing mbfa on NZ_GG705125.fna
938s PASSED mbfa
938s 
938s Test Murasaki on NZ_GG705126.fna
938s Verbosity level is: 0
938s Writing to: output/test
938s Pattern is: 101
938s Max usable hash bits: 27
938s Hit filter is: 0
938s Hash table type is: EcoHash
938s Hashing every: 1 base
938s Histogram detail is: 0
938s Hashing function is: 3
938s Collision profiling is: disabled
938s Repeats are: unmasked
938s Mergefilter is at: 100
938s Random seed: 1710370334 (automatic)
938s Bitscore output: on
938s Leave status records: no
938s Join neighbors is: off
938s Target memory is: 3.43 GB
938s Retain members is: true
938s Store repeatmap? yes
938s Reverse complement data is generated on the fly
938s Rifts allowed: 0
938s Fuzzy Extension: yes
938s Score by minimum pair: yes
938s Gapped anchors: no
938s Large sequence support is: enabled => seqpos is 8 bytes
938s Murasaki version 1.68.6 (LARGESEQ)
938s Loading NZ_GG705126.fna
938s Read 559bp (559 bytesp) in 0.001 seconds (994.4 KBp/s)
938s Done with forward strand (559bp). Preparing reverse complement...
938s  <-> Reversing metdata.
938s Done.
938s Seq NZ_GG705126.fna loaded. 559 bytes
938s Loading NZ_GG705126.gbk
938s Read 559bp (559 bytesp) in 0.000 seconds (2.2 MBp/s)
938s Done with forward strand (559bp). Preparing reverse complement...
938s  <-> Reversing metdata.
938s Done.
938s Seq NZ_GG705126.gbk loaded. 559 bytes
938s Sequence loading took: 0.001 seconds
938s Forward frequencies:  A:37.3882%  C:13.9535%  G:15.2057%  T:33.4526%
938s Global base frequencies:  A/T:70.8408%  C/G:29.1592%
938s Pat: 3 bases long with weight 2
938s    1 101 
938s Computing hash parameters...
938s Using 4 hashbits
938s  0%......... (T -0.096 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.072 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 91%........
938s Acceptable hash function found after 1000 cycles.
938s Best uses 2/2 bases and has 0 empties from 2 inputs.
938s Score: 0.96875 (cf. worst: -4.51562)
938s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
938s Total correlation penalty: 0
938s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
938s                                             10
938s                                             ==
938s w[ 0]>>29:                                 -.C
938s w[ 0]>>30:                                  A.-
938s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
938s Ecolist (optimistic): Expcted entries per list: 8
938s Ecolist (optimistic): Minimum chunks per list: 4
938s Would take minimum 256.000000 bytes to make perfect hash.
938s Hashing 2.18 KB of sequence requires: 
938s  ~ linear (in seq length) hashing cost of 3.54 KB
938s  ~ linear (in seq length) expected anchor cost of 52.41 KB
938s Initial hash table uses: 256 bytes (4 bits, 16 entries)
938s Expected memory usage (without anchors): 3.79 KB
938s Expected memory usage (with anchors): 56.20 KB
938s Hash parameters computed in 0.101 seconds
938s Creating storage structures: 16 entries in 256 bytes space.
938s Storage structures created in: 0.000 seconds
938s 
938s Hashing NZ_GG705126.fna forwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705126.fna backwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705126.gbk forwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705126.gbk backwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Initial hashing took: 0.002 seconds
938s Extracting anchors from hash-space.
938s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s  6%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 31%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 43%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 93%.
938s Anchor extraction completed in: 0.001 seconds
938s Total anchors: 0
938s Anchor extraction + merge time: 0.001 seconds
938s Total processing time: 0.106 seconds
938s Writing anchors...
938s Total seeds used in anchors: 16
938s Hash performance:
938s  Keys used: 16 out of 16 possible (100.00%).
938s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
938s  Average pigeons per pigeon hole: 1
938s Writing 16 repeats...Output writing finished in: 0.001 seconds
938s Total time: 0.106 seconds
938s Murasaki finished!
938s PASSED MURASAKI
938s 
938s Testing Genepare on NZ_GG705126.fna
938s 18446744073709551176
938s PASSED GENEPARSE
938s 
938s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
938s Testing mbfa on NZ_GG705126.fna
938s PASSED mbfa
938s 
938s Test Murasaki on NZ_GG705127.fna
938s Verbosity level is: 0
938s Writing to: output/test
938s Pattern is: 101
938s Max usable hash bits: 27
938s Hit filter is: 0
938s Hash table type is: EcoHash
938s Hashing every: 1 base
938s Histogram detail is: 0
938s Hashing function is: 3
938s Collision profiling is: disabled
938s Repeats are: unmasked
938s Mergefilter is at: 100
938s Random seed: 1710370334 (automatic)
938s Bitscore output: on
938s Leave status records: no
938s Join neighbors is: off
938s Target memory is: 3.43 GB
938s Retain members is: true
938s Store repeatmap? yes
938s Reverse complement data is generated on the fly
938s Rifts allowed: 0
938s Fuzzy Extension: yes
938s Score by minimum pair: yes
938s Gapped anchors: no
938s Large sequence support is: enabled => seqpos is 8 bytes
938s Murasaki version 1.68.6 (LARGESEQ)
938s Loading NZ_GG705127.fna
938s Read 549bp (549 bytesp) in 0.001 seconds (1.0 MBp/s)
938s Done with forward strand (549bp). Preparing reverse complement...
938s  <-> Reversing metdata.
938s Done.
938s Seq NZ_GG705127.fna loaded. 549 bytes
938s Loading NZ_GG705127.gbk
938s Read 549bp (549 bytesp) in 0.000 seconds (2.0 MBp/s)
938s Done with forward strand (549bp). Preparing reverse complement...
938s  <-> Reversing metdata.
938s Done.
938s Seq NZ_GG705127.gbk loaded. 549 bytes
938s Sequence loading took: 0.001 seconds
938s Forward frequencies:  A:32.969%  C:20.4007%  G:20.765%  T:25.8652%
938s Global base frequencies:  A/T:58.8342%  C/G:41.1658%
938s Pat: 3 bases long with weight 2
938s    1 101 
938s Computing hash parameters...
938s Using 4 hashbits
938s  0%......... (T -0.093 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.071 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 91%........
938s Acceptable hash function found after 1000 cycles.
938s Best uses 2/2 bases and has 0 empties from 2 inputs.
938s Score: 0.96875 (cf. worst: -4.51562)
938s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
938s Total correlation penalty: 0
938s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
938s                                             10
938s                                             ==
938s w[ 0]>>29:                                 -.C
938s w[ 0]>>30:                                  A.-
938s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
938s Ecolist (optimistic): Expcted entries per list: 8
938s Ecolist (optimistic): Minimum chunks per list: 4
938s Would take minimum 256.000000 bytes to make perfect hash.
938s Hashing 2.14 KB of sequence requires: 
938s  ~ linear (in seq length) hashing cost of 3.48 KB
938s  ~ linear (in seq length) expected anchor cost of 51.47 KB
938s Initial hash table uses: 256 bytes (4 bits, 16 entries)
938s Expected memory usage (without anchors): 3.73 KB
938s Expected memory usage (with anchors): 55.20 KB
938s Hash parameters computed in 0.101 seconds
938s Creating storage structures: 16 entries in 256 bytes space.
938s Storage structures created in: 0.000 seconds
938s 
938s Hashing NZ_GG705127.fna forwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705127.fna backwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705127.gbk forwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Hashing NZ_GG705127.gbk backwards
938s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 90%........
938s Initial hashing took: 0.002 seconds
938s Extracting anchors from hash-space.
938s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 43%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:14 2024
938s 93%.
938s Anchor extraction completed in: 0.001 seconds
938s Total anchors: 0
938s Anchor extraction + merge time: 0.001 seconds
938s Total processing time: 0.105 seconds
938s Writing anchors...
938s Total seeds used in anchors: 16
938s Hash performance:
938s  Keys used: 16 out of 16 possible (100.00%).
938s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
938s  Average pigeons per pigeon hole: 1
938s Writing 16 repeats...Output writing finished in: 0.001 seconds
938s Total time: 0.106 seconds
938s Murasaki finished!
938s PASSED MURASAKI
938s 
938s Testing Genepare on NZ_GG705127.fna
938s 18446744073709551166
938s PASSED GENEPARSE
938s 
938s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
939s Testing mbfa on NZ_GG705127.fna
939s PASSED mbfa
939s 
939s Test Murasaki on NZ_GG705128.fna
939s Verbosity level is: 0
939s Writing to: output/test
939s Pattern is: 101
939s Max usable hash bits: 27
939s Hit filter is: 0
939s Hash table type is: EcoHash
939s Hashing every: 1 base
939s Histogram detail is: 0
939s Hashing function is: 3
939s Collision profiling is: disabled
939s Repeats are: unmasked
939s Mergefilter is at: 100
939s Random seed: 1710370334 (automatic)
939s Bitscore output: on
939s Leave status records: no
939s Join neighbors is: off
939s Target memory is: 3.43 GB
939s Retain members is: true
939s Store repeatmap? yes
939s Reverse complement data is generated on the fly
939s Rifts allowed: 0
939s Fuzzy Extension: yes
939s Score by minimum pair: yes
939s Gapped anchors: no
939s Large sequence support is: enabled => seqpos is 8 bytes
939s Murasaki version 1.68.6 (LARGESEQ)
939s Loading NZ_GG705128.fna
939s Read 548bp (548 bytesp) in 0.001 seconds (1021.3 KBp/s)
939s Done with forward strand (548bp). Preparing reverse complement...
939s  <-> Reversing metdata.
939s Done.
939s Seq NZ_GG705128.fna loaded. 548 bytes
939s Loading NZ_GG705128.gbk
939s Read 548bp (548 bytesp) in 0.000 seconds (2.0 MBp/s)
939s Done with forward strand (548bp). Preparing reverse complement...
939s  <-> Reversing metdata.
939s Done.
939s Seq NZ_GG705128.gbk loaded. 548 bytes
939s Sequence loading took: 0.001 seconds
939s Forward frequencies:  A:31.9343%  C:19.5255%  G:21.7153%  T:26.8248%
939s Global base frequencies:  A/T:58.7591%  C/G:41.2409%
939s Pat: 3 bases long with weight 2
939s    1 101 
939s Computing hash parameters...
939s Using 4 hashbits
939s  0%......... (T -0.091 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%......... (T -0.082 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%......... (T -0.071 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%......... (T -0.013 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%........
939s Acceptable hash function found after 1000 cycles.
939s Best uses 2/2 bases and has 0 empties from 2 inputs.
939s Score: 0.96875 (cf. worst: -4.51562)
939s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
939s Total correlation penalty: 0
939s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
939s                                             10
939s                                             ==
939s w[ 0]>>29:                                 -.C
939s w[ 0]>>30:                                  A.-
939s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
939s Ecolist (optimistic): Expcted entries per list: 8
939s Ecolist (optimistic): Minimum chunks per list: 4
939s Would take minimum 256.000000 bytes to make perfect hash.
939s Hashing 2.14 KB of sequence requires: 
939s  ~ linear (in seq length) hashing cost of 3.48 KB
939s  ~ linear (in seq length) expected anchor cost of 51.38 KB
939s Initial hash table uses: 256 bytes (4 bits, 16 entries)
939s Expected memory usage (without anchors): 3.73 KB
939s Expected memory usage (with anchors): 55.10 KB
939s Hash parameters computed in 0.140 seconds
939s Creating storage structures: 16 entries in 256 bytes space.
939s Storage structures created in: 0.001 seconds
939s 
939s Hashing NZ_GG705128.fna forwards
939s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 90%........
939s Hashing NZ_GG705128.fna backwards
939s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 90%........
939s Hashing NZ_GG705128.gbk forwards
939s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 90%........
939s Hashing NZ_GG705128.gbk backwards
939s  0%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%......... (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 90%........
939s Initial hashing took: 0.002 seconds
939s Extracting anchors from hash-space.
939s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 43%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 93%.
939s Anchor extraction completed in: 0.001 seconds
939s Total anchors: 0
939s Anchor extraction + merge time: 0.001 seconds
939s Total processing time: 0.144 seconds
939s Writing anchors...
939s Total seeds used in anchors: 16
939s Hash performance:
939s  Keys used: 16 out of 16 possible (100.00%).
939s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
939s  Average pigeons per pigeon hole: 1
939s Writing 16 repeats...Output writing finished in: 0.001 seconds
939s Total time: 0.145 seconds
939s Murasaki finished!
939s PASSED MURASAKI
939s 
939s Testing Genepare on NZ_GG705128.fna
939s 18446744073709551165
939s PASSED GENEPARSE
939s 
939s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
939s Testing mbfa on NZ_GG705128.fna
939s PASSED mbfa
939s 
939s Test Murasaki on NZ_GG705129.fna
939s Verbosity level is: 0
939s Writing to: output/test
939s Pattern is: 101
939s Max usable hash bits: 27
939s Hit filter is: 0
939s Hash table type is: EcoHash
939s Hashing every: 1 base
939s Histogram detail is: 0
939s Hashing function is: 3
939s Collision profiling is: disabled
939s Repeats are: unmasked
939s Mergefilter is at: 100
939s Random seed: 1710370335 (automatic)
939s Bitscore output: on
939s Leave status records: no
939s Join neighbors is: off
939s Target memory is: 3.43 GB
939s Retain members is: true
939s Store repeatmap? yes
939s Reverse complement data is generated on the fly
939s Rifts allowed: 0
939s Fuzzy Extension: yes
939s Score by minimum pair: yes
939s Gapped anchors: no
939s Large sequence support is: enabled => seqpos is 8 bytes
939s Murasaki version 1.68.6 (LARGESEQ)
939s Loading NZ_GG705129.fna
939s Read 536bp (536 bytesp) in 0.001 seconds (859.5 KBp/s)
939s Done with forward strand (536bp). Preparing reverse complement...
939s  <-> Reversing metdata.
939s Done.
939s Seq NZ_GG705129.fna loaded. 536 bytes
939s Loading NZ_GG705129.gbk
939s Read 536bp (536 bytesp) in 0.000 seconds (1.9 MBp/s)
939s Done with forward strand (536bp). Preparing reverse complement...
939s  <-> Reversing metdata.
939s Done.
939s Seq NZ_GG705129.gbk loaded. 536 bytes
939s Sequence loading took: 0.001 seconds
939s Forward frequencies:  A:36.3806%  C:13.2463%  G:17.9104%  T:32.4627%
939s Global base frequencies:  A/T:68.8433%  C/G:31.1567%
939s Pat: 3 bases long with weight 2
939s    1 101 
939s Computing hash parameters...
939s Using 4 hashbits
939s  0%......... (T -0.092 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%......... (T -0.081 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%......... (T -0.071 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%......... (T -0.061 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%......... (T -0.051 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%......... (T -0.040 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%......... (T -0.030 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%......... (T -0.020 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%........
939s Acceptable hash function found after 1000 cycles.
939s Best uses 2/2 bases and has 0 empties from 2 inputs.
939s Score: 0.96875 (cf. worst: -4.51562)
939s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
939s Total correlation penalty: 0
939s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
939s                                             10
939s                                             ==
939s w[ 0]>>29:                                 -.C
939s w[ 0]>>30:                                  A.-
939s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
939s Ecolist (optimistic): Expcted entries per list: 8
939s Ecolist (optimistic): Minimum chunks per list: 4
939s Would take minimum 256.000000 bytes to make perfect hash.
939s Hashing 2.09 KB of sequence requires: 
939s  ~ linear (in seq length) hashing cost of 3.40 KB
939s  ~ linear (in seq length) expected anchor cost of 50.25 KB
939s Initial hash table uses: 256 bytes (4 bits, 16 entries)
939s Expected memory usage (without anchors): 3.65 KB
939s Expected memory usage (with anchors): 53.90 KB
939s Hash parameters computed in 0.101 seconds
939s Creating storage structures: 16 entries in 256 bytes space.
939s Storage structures created in: 0.000 seconds
939s 
939s Hashing NZ_GG705129.fna forwards
939s  0%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%.......
939s Hashing NZ_GG705129.fna backwards
939s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%.......
939s Hashing NZ_GG705129.gbk forwards
939s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%.......
939s Hashing NZ_GG705129.gbk backwards
939s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%.......
939s Initial hashing took: 0.003 seconds
939s Extracting anchors from hash-space.
939s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s  6%. (T -0.002 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 31%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 43%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 93%.
939s Anchor extraction completed in: 0.001 seconds
939s Total anchors: 0
939s Anchor extraction + merge time: 0.001 seconds
939s Total processing time: 0.106 seconds
939s Writing anchors...
939s Total seeds used in anchors: 16
939s Hash performance:
939s  Keys used: 16 out of 16 possible (100.00%).
939s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
939s  Average pigeons per pigeon hole: 1
939s Writing 16 repeats...Output writing finished in: 0.001 seconds
939s Total time: 0.107 seconds
939s Murasaki finished!
939s PASSED MURASAKI
939s 
939s Testing Genepare on NZ_GG705129.fna
939s 18446744073709551153
939s PASSED GENEPARSE
939s 
939s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
939s Testing mbfa on NZ_GG705129.fna
939s PASSED mbfa
939s 
939s Test Murasaki on NZ_GG705130.fna
939s Verbosity level is: 0
939s Writing to: output/test
939s Pattern is: 101
939s Max usable hash bits: 27
939s Hit filter is: 0
939s Hash table type is: EcoHash
939s Hashing every: 1 base
939s Histogram detail is: 0
939s Hashing function is: 3
939s Collision profiling is: disabled
939s Repeats are: unmasked
939s Mergefilter is at: 100
939s Random seed: 1710370335 (automatic)
939s Bitscore output: on
939s Leave status records: no
939s Join neighbors is: off
939s Target memory is: 3.43 GB
939s Retain members is: true
939s Store repeatmap? yes
939s Reverse complement data is generated on the fly
939s Rifts allowed: 0
939s Fuzzy Extension: yes
939s Score by minimum pair: yes
939s Gapped anchors: no
939s Large sequence support is: enabled => seqpos is 8 bytes
939s Murasaki version 1.68.6 (LARGESEQ)
939s Loading NZ_GG705130.fna
939s Read 512bp (512 bytesp) in 0.000 seconds (1.0 MBp/s)
939s Done with forward strand (512bp). Preparing reverse complement...
939s  <-> Reversing metdata.
939s Done.
939s Seq NZ_GG705130.fna loaded. 512 bytes
939s Loading NZ_GG705130.gbk
939s Read 512bp (512 bytesp) in 0.000 seconds (1.4 MBp/s)
939s Done with forward strand (512bp). Preparing reverse complement...
939s  <-> Reversing metdata.
939s Done.
939s Seq NZ_GG705130.gbk loaded. 512 bytes
939s Sequence loading took: 0.001 seconds
939s Forward frequencies:  A:33.5938%  C:14.4531%  G:19.1406%  T:32.8125%
939s Global base frequencies:  A/T:66.4062%  C/G:33.5938%
939s Pat: 3 bases long with weight 2
939s    1 101 
939s Computing hash parameters...
939s Using 4 hashbits
939s  0%......... (T -0.094 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%......... (T -0.084 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%......... (T -0.073 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%......... (T -0.062 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%......... (T -0.052 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 50%......... (T -0.041 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 60%......... (T -0.031 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 70%......... (T -0.021 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 80%......... (T -0.009 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%........
939s Acceptable hash function found after 1000 cycles.
939s Best uses 2/2 bases and has 0 empties from 2 inputs.
939s Score: 0.96875 (cf. worst: -4.51562)
939s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
939s Total correlation penalty: 0
939s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
939s                                             10
939s                                             ==
939s w[ 0]>>29:                                 -.C
939s w[ 0]>>30:                                  A.-
939s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
939s Ecolist (optimistic): Expcted entries per list: 8
939s Ecolist (optimistic): Minimum chunks per list: 4
939s Would take minimum 256.000000 bytes to make perfect hash.
939s Hashing 2.00 KB of sequence requires: 
939s  ~ linear (in seq length) hashing cost of 3.25 KB
939s  ~ linear (in seq length) expected anchor cost of 48.00 KB
939s Initial hash table uses: 256 bytes (4 bits, 16 entries)
939s Expected memory usage (without anchors): 3.50 KB
939s Expected memory usage (with anchors): 51.50 KB
939s Hash parameters computed in 0.104 seconds
939s Creating storage structures: 16 entries in 256 bytes space.
939s Storage structures created in: 0.000 seconds
939s 
939s Hashing NZ_GG705130.fna forwards
939s  0%........ (T -0.002 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%........ (T -0.002 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%........ (T -0.002 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 51%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 61%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%......
939s Hashing NZ_GG705130.fna backwards
939s  0%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 51%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 61%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%......
939s Hashing NZ_GG705130.gbk forwards
939s  0%........ (T -0.002 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%........ (T -0.002 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 51%........ (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 61%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%......
939s Hashing NZ_GG705130.gbk backwards
939s  0%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 10%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 20%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 30%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 40%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 51%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 61%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 71%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 81%........ (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 91%......
939s Initial hashing took: 0.006 seconds
939s Extracting anchors from hash-space.
939s  (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s  6%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 18%. (T -0.001 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 31%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 43%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 56%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 68%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 81%. (T -0.000 seconds) ETA: Wed Mar 13 22:52:15 2024
939s 93%.
939s Anchor extraction completed in: 0.001 seconds
939s Total anchors: 0
939s Anchor extraction + merge time: 0.001 seconds
939s Total processing time: 0.113 seconds
939s Writing anchors...
939s Total seeds used in anchors: 16
939s Hash performance:
939s  Keys used: 16 out of 16 possible (100.00%).
939s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
939s  Average pigeons per pigeon hole: 1
939s Writing 16 repeats...Output writing finished in: 0.001 seconds
939s Total time: 0.113 seconds
939s Murasaki finished!
939s PASSED MURASAKI
939s 
939s Testing Genepare on NZ_GG705130.fna
939s 18446744073709551129
939s PASSED GENEPARSE
939s 
939s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
939s Testing mbfa on NZ_GG705130.fna
940s PASSED mbfa
940s 
940s PASS!
941s autopkgtest [22:52:17]: test run-unit-test: -----------------------]
942s autopkgtest [22:52:18]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
942s run-unit-test        PASS
943s autopkgtest [22:52:19]: @@@@@@@@@@@@@@@@@@@@ summary
943s run-unit-test        PASS
961s Creating nova instance adt-noble-arm64-murasaki-20240313-223636-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240313.img (UUID 363cdc04-8630-403e-ac93-f1c7b1a75157)...
961s soft reboot timed out, doing hard reboot