0s autopkgtest [22:41:54]: starting date and time: 2024-03-19 22:41:54+0000 0s autopkgtest [22:41:54]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [22:41:54]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8r2kfna0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:openssh,src:at-spi2-core,src:glib2.0,src:gtk+3.0,src:openssl --apt-upgrade mrbayes --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openssh/1:9.6p1-3ubuntu11 at-spi2-core/2.51.90-3 glib2.0/2.79.3-3ubuntu5 gtk+3.0/3.24.41-1.1ubuntu1 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-12.secgroup --name adt-noble-arm64-mrbayes-20240319-224153-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 213s autopkgtest [22:45:27]: testbed dpkg architecture: arm64 214s autopkgtest [22:45:28]: testbed apt version: 2.7.12 214s autopkgtest [22:45:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 214s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 215s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB] 215s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3797 kB] 215s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [492 kB] 215s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 215s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [665 kB] 215s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 215s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [41.7 kB] 215s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 215s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4154 kB] 215s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 215s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [56.7 kB] 215s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 218s Fetched 9395 kB in 2s (5663 kB/s) 218s Reading package lists... 220s Reading package lists... 220s Building dependency tree... 220s Reading state information... 221s Calculating upgrade... 221s The following packages will be REMOVED: 221s libglib2.0-0 libssl3 221s The following NEW packages will be installed: 221s libglib2.0-0t64 libssl3t64 xdg-user-dirs 221s The following packages will be upgraded: 221s gir1.2-glib-2.0 libglib2.0-data openssh-client openssh-server 221s openssh-sftp-server openssl ubuntu-minimal ubuntu-standard 221s 8 upgraded, 3 newly installed, 2 to remove and 0 not upgraded. 221s Need to get 5995 kB of archives. 221s After this operation, 802 kB of additional disk space will be used. 221s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 221s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 222s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 222s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssh-sftp-server arm64 1:9.6p1-3ubuntu11 [36.8 kB] 222s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssh-server arm64 1:9.6p1-3ubuntu11 [501 kB] 222s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssh-client arm64 1:9.6p1-3ubuntu11 [884 kB] 222s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 222s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 222s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536build1 [10.7 kB] 222s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 222s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536build1 [10.7 kB] 222s Preconfiguring packages ... 222s Fetched 5995 kB in 1s (7732 kB/s) 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 222s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 222s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 222s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 222s udisks2 depends on libglib2.0-0 (>= 2.77.0). 222s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 222s python3-gi depends on libglib2.0-0 (>= 2.77.0). 222s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 222s netplan.io depends on libglib2.0-0 (>= 2.70.0). 222s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 222s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 222s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 222s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 222s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 222s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 222s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 222s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 222s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 222s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 222s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 222s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 222s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 222s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 222s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 222s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 222s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 222s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 222s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 222s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 222s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 222s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 222s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 222s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 222s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 222s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 222s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 222s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 222s fwupd depends on libglib2.0-0 (>= 2.79.0). 222s bolt depends on libglib2.0-0 (>= 2.56.0). 222s 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 222s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 222s Selecting previously unselected package libglib2.0-0t64:arm64. 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 222s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 222s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 222s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 222s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 222s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 222s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 222s Preparing to unpack .../openssh-sftp-server_1%3a9.6p1-3ubuntu11_arm64.deb ... 222s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 222s Preparing to unpack .../openssh-server_1%3a9.6p1-3ubuntu11_arm64.deb ... 222s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 222s Preparing to unpack .../openssh-client_1%3a9.6p1-3ubuntu11_arm64.deb ... 222s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 223s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 223s wget depends on libssl3 (>= 3.0.0). 223s u-boot-tools depends on libssl3 (>= 3.0.0). 223s tnftp depends on libssl3 (>= 3.0.0). 223s tcpdump depends on libssl3 (>= 3.0.0). 223s systemd-resolved depends on libssl3 (>= 3.0.0). 223s systemd depends on libssl3 (>= 3.0.0). 223s sudo depends on libssl3 (>= 3.0.0). 223s sbsigntool depends on libssl3 (>= 3.0.0). 223s rsync depends on libssl3 (>= 3.0.0). 223s python3-cryptography depends on libssl3 (>= 3.0.0). 223s mtd-utils depends on libssl3 (>= 3.0.0). 223s mokutil depends on libssl3 (>= 3.0.0). 223s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 223s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 223s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 223s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 223s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 223s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 223s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 223s libnvme1 depends on libssl3 (>= 3.0.0). 223s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 223s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 223s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 223s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 223s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 223s kmod depends on libssl3 (>= 3.0.0). 223s dhcpcd-base depends on libssl3 (>= 3.0.0). 223s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 223s 223s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 223s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 223s Selecting previously unselected package libssl3t64:arm64. 223s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 223s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 223s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 223s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 223s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 223s Preparing to unpack .../ubuntu-minimal_1.536build1_arm64.deb ... 223s Unpacking ubuntu-minimal (1.536build1) over (1.536) ... 223s Selecting previously unselected package xdg-user-dirs. 223s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 223s Unpacking xdg-user-dirs (0.18-1) ... 223s Preparing to unpack .../ubuntu-standard_1.536build1_arm64.deb ... 223s Unpacking ubuntu-standard (1.536build1) over (1.536) ... 223s Setting up ubuntu-minimal (1.536build1) ... 223s Setting up xdg-user-dirs (0.18-1) ... 223s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 223s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 223s Setting up ubuntu-standard (1.536build1) ... 223s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 223s No schema files found: doing nothing. 223s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 223s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 223s Setting up openssl (3.0.13-0ubuntu2) ... 223s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 223s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 223s Replacing config file /etc/ssh/sshd_config with new version 224s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 225s Processing triggers for ufw (0.36.2-5) ... 225s Processing triggers for man-db (2.12.0-3) ... 226s Processing triggers for libc-bin (2.39-0ubuntu2) ... 226s Reading package lists... 227s Building dependency tree... 227s Reading state information... 227s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 228s sh: Attempting to set up Debian/Ubuntu apt sources automatically 228s sh: Distribution appears to be Ubuntu 228s Reading package lists... 228s Building dependency tree... 228s Reading state information... 229s eatmydata is already the newest version (131-1). 229s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 229s Reading package lists... 229s Building dependency tree... 229s Reading state information... 229s dbus is already the newest version (1.14.10-4ubuntu1). 229s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 229s Reading package lists... 229s Building dependency tree... 229s Reading state information... 230s rng-tools-debian is already the newest version (2.4). 230s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 230s Reading package lists... 230s Building dependency tree... 230s Reading state information... 230s The following packages will be REMOVED: 230s cloud-init* python3-configobj* python3-debconf* 231s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 231s After this operation, 3252 kB disk space will be freed. 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 231s Removing cloud-init (24.1.1-0ubuntu1) ... 231s Removing python3-configobj (5.0.8-3) ... 231s Removing python3-debconf (1.5.86) ... 231s Processing triggers for man-db (2.12.0-3) ... 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75477 files and directories currently installed.) 231s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 232s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 232s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 232s invoke-rc.d: policy-rc.d denied execution of try-restart. 232s Reading package lists... 232s Building dependency tree... 232s Reading state information... 233s linux-generic is already the newest version (6.8.0-11.11+1). 233s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 233s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 233s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 233s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 235s Reading package lists... 235s Reading package lists... 235s Building dependency tree... 235s Reading state information... 235s Calculating upgrade... 235s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 235s Reading package lists... 236s Building dependency tree... 236s Reading state information... 236s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 236s autopkgtest [22:45:50]: rebooting testbed after setup commands that affected boot 296s autopkgtest [22:46:50]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 298s autopkgtest [22:46:52]: @@@@@@@@@@@@@@@@@@@@ apt-source mrbayes 301s Get:1 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (dsc) [2184 B] 301s Get:2 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (tar) [9819 kB] 301s Get:3 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (diff) [7380 B] 301s gpgv: Signature made Sun Jan 14 13:54:21 2024 UTC 301s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 301s gpgv: issuer "tille@debian.org" 301s gpgv: Can't check signature: No public key 301s dpkg-source: warning: cannot verify inline signature for ./mrbayes_3.2.7a-7.dsc: no acceptable signature found 302s autopkgtest [22:46:56]: testing package mrbayes version 3.2.7a-7 302s autopkgtest [22:46:56]: build not needed 303s autopkgtest [22:46:57]: test run-unit-test: preparing testbed 304s Reading package lists... 304s Building dependency tree... 304s Reading state information... 305s Starting pkgProblemResolver with broken count: 0 305s Starting 2 pkgProblemResolver with broken count: 0 305s Done 305s The following additional packages will be installed: 305s libamd-comgr2 libamdhip64-5 libatomic1 libclang-common-17-dev libclang-cpp17 305s libclc-17 libclc-17-dev libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 305s libevent-pthreads-2.1-7 libfabric1 libhmsbeagle1v5 libhsa-runtime64-1 305s libhsakmt1 libhwloc-plugins libhwloc15 libllvm17 libllvmspirvlib17 libmunge2 305s libopenmpi3 libpciaccess0 libpmix2 librdmacm1t64 libucx0 libxnvctrl0 305s mesa-opencl-icd mpi-default-bin mrbayes mrbayes-doc mrbayes-mpi 305s ocl-icd-libopencl1 openmpi-bin openmpi-common ssh 305s Suggested packages: 305s mpi-default gfortran | fortran-compiler 305s Recommended packages: 305s libclang-rt-17-dev 305s The following NEW packages will be installed: 305s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libatomic1 305s libclang-common-17-dev libclang-cpp17 libclc-17 libclc-17-dev libdrm-amdgpu1 305s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7 libfabric1 305s libhmsbeagle1v5 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 305s libllvm17 libllvmspirvlib17 libmunge2 libopenmpi3 libpciaccess0 libpmix2 305s librdmacm1t64 libucx0 libxnvctrl0 mesa-opencl-icd mpi-default-bin mrbayes 305s mrbayes-doc mrbayes-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common ssh 305s 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. 305s Need to get 94.7 MB/94.7 MB of archives. 305s After this operation, 483 MB of additional disk space will be used. 305s Get:1 /tmp/autopkgtest.5hyMa2/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 305s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 307s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 308s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 308s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 308s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 308s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 309s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 309s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libclang-common-17-dev all 1:17.0.6-5build1 [690 kB] 309s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libclang-cpp17 arm64 1:17.0.6-5build1 [12.6 MB] 310s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libclc-17-dev all 1:17.0.6-5build1 [60.7 kB] 310s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libclc-17 all 1:17.0.6-5build1 [9972 kB] 311s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 311s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 311s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 311s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 311s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB] 311s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 311s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 libllvmspirvlib17 arm64 17.0.0-4 [788 kB] 311s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 mesa-opencl-icd arm64 24.0.1-1ubuntu1 [17.1 MB] 312s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libhmsbeagle1v5 arm64 3.1.2+dfsg-13 [110 kB] 312s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 312s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 312s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 312s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 312s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 312s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB] 312s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 312s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB] 313s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 mrbayes arm64 3.2.7a-7 [691 kB] 313s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB] 313s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB] 313s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 313s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 ssh all 1:9.6p1-3ubuntu2 [4654 B] 313s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 mrbayes-mpi arm64 3.2.7a-7 [617 kB] 313s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 mrbayes-doc all 3.2.7a-7 [1322 kB] 313s Fetched 94.7 MB in 8s (11.9 MB/s) 313s Selecting previously unselected package libllvm17:arm64. 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75422 files and directories currently installed.) 313s Preparing to unpack .../00-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 313s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 314s Selecting previously unselected package libamd-comgr2:arm64. 314s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 314s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 314s Selecting previously unselected package libdrm-amdgpu1:arm64. 314s Preparing to unpack .../02-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 314s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 314s Selecting previously unselected package libhsakmt1:arm64. 314s Preparing to unpack .../03-libhsakmt1_5.7.0-1_arm64.deb ... 314s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 314s Selecting previously unselected package libhsa-runtime64-1. 314s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 314s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 314s Selecting previously unselected package libamdhip64-5. 314s Preparing to unpack .../05-libamdhip64-5_5.2.3-12_arm64.deb ... 314s Unpacking libamdhip64-5 (5.2.3-12) ... 315s Selecting previously unselected package libatomic1:arm64. 315s Preparing to unpack .../06-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 315s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 315s Selecting previously unselected package libclang-common-17-dev. 315s Preparing to unpack .../07-libclang-common-17-dev_1%3a17.0.6-5build1_all.deb ... 315s Unpacking libclang-common-17-dev (1:17.0.6-5build1) ... 315s Selecting previously unselected package libclang-cpp17. 315s Preparing to unpack .../08-libclang-cpp17_1%3a17.0.6-5build1_arm64.deb ... 315s Unpacking libclang-cpp17 (1:17.0.6-5build1) ... 315s Selecting previously unselected package libclc-17-dev. 315s Preparing to unpack .../09-libclc-17-dev_1%3a17.0.6-5build1_all.deb ... 315s Unpacking libclc-17-dev (1:17.0.6-5build1) ... 315s Selecting previously unselected package libclc-17. 315s Preparing to unpack .../10-libclc-17_1%3a17.0.6-5build1_all.deb ... 315s Unpacking libclc-17 (1:17.0.6-5build1) ... 315s Selecting previously unselected package libdrm-nouveau2:arm64. 315s Preparing to unpack .../11-libdrm-nouveau2_2.4.120-2_arm64.deb ... 315s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 315s Selecting previously unselected package libdrm-radeon1:arm64. 315s Preparing to unpack .../12-libdrm-radeon1_2.4.120-2_arm64.deb ... 315s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 315s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 315s Preparing to unpack .../13-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 315s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 316s Selecting previously unselected package librdmacm1t64:arm64. 316s Preparing to unpack .../14-librdmacm1t64_50.0-2_arm64.deb ... 316s Unpacking librdmacm1t64:arm64 (50.0-2) ... 316s Selecting previously unselected package libfabric1:arm64. 316s Preparing to unpack .../15-libfabric1_1.17.0-3_arm64.deb ... 316s Unpacking libfabric1:arm64 (1.17.0-3) ... 316s Selecting previously unselected package ocl-icd-libopencl1:arm64. 316s Preparing to unpack .../16-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 316s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 316s Selecting previously unselected package libllvmspirvlib17:arm64. 316s Preparing to unpack .../17-libllvmspirvlib17_17.0.0-4_arm64.deb ... 316s Unpacking libllvmspirvlib17:arm64 (17.0.0-4) ... 316s Selecting previously unselected package mesa-opencl-icd:arm64. 316s Preparing to unpack .../18-mesa-opencl-icd_24.0.1-1ubuntu1_arm64.deb ... 316s Unpacking mesa-opencl-icd:arm64 (24.0.1-1ubuntu1) ... 316s Selecting previously unselected package libhmsbeagle1v5:arm64. 316s Preparing to unpack .../19-libhmsbeagle1v5_3.1.2+dfsg-13_arm64.deb ... 316s Unpacking libhmsbeagle1v5:arm64 (3.1.2+dfsg-13) ... 316s Selecting previously unselected package libhwloc15:arm64. 316s Preparing to unpack .../20-libhwloc15_2.10.0-1_arm64.deb ... 316s Unpacking libhwloc15:arm64 (2.10.0-1) ... 316s Selecting previously unselected package libmunge2:arm64. 316s Preparing to unpack .../21-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 316s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 316s Selecting previously unselected package libpciaccess0:arm64. 316s Preparing to unpack .../22-libpciaccess0_0.17-3_arm64.deb ... 316s Unpacking libpciaccess0:arm64 (0.17-3) ... 316s Selecting previously unselected package libxnvctrl0:arm64. 316s Preparing to unpack .../23-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 316s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 316s Selecting previously unselected package libhwloc-plugins:arm64. 316s Preparing to unpack .../24-libhwloc-plugins_2.10.0-1_arm64.deb ... 316s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 316s Selecting previously unselected package libpmix2:arm64. 316s Preparing to unpack .../25-libpmix2_5.0.1-4_arm64.deb ... 316s Unpacking libpmix2:arm64 (5.0.1-4) ... 316s Selecting previously unselected package libucx0:arm64. 316s Preparing to unpack .../26-libucx0_1.16.0+ds-4_arm64.deb ... 316s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 316s Selecting previously unselected package libopenmpi3:arm64. 316s Preparing to unpack .../27-libopenmpi3_4.1.6-5ubuntu1_arm64.deb ... 316s Unpacking libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 316s Selecting previously unselected package mrbayes. 316s Preparing to unpack .../28-mrbayes_3.2.7a-7_arm64.deb ... 316s Unpacking mrbayes (3.2.7a-7) ... 316s Selecting previously unselected package openmpi-common. 316s Preparing to unpack .../29-openmpi-common_4.1.6-5ubuntu1_all.deb ... 316s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 316s Selecting previously unselected package openmpi-bin. 316s Preparing to unpack .../30-openmpi-bin_4.1.6-5ubuntu1_arm64.deb ... 316s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 317s Selecting previously unselected package mpi-default-bin. 317s Preparing to unpack .../31-mpi-default-bin_1.15_arm64.deb ... 317s Unpacking mpi-default-bin (1.15) ... 317s Selecting previously unselected package ssh. 317s Preparing to unpack .../32-ssh_1%3a9.6p1-3ubuntu2_all.deb ... 317s Unpacking ssh (1:9.6p1-3ubuntu2) ... 317s Selecting previously unselected package mrbayes-mpi. 317s Preparing to unpack .../33-mrbayes-mpi_3.2.7a-7_arm64.deb ... 317s Unpacking mrbayes-mpi (3.2.7a-7) ... 317s Selecting previously unselected package mrbayes-doc. 317s Preparing to unpack .../34-mrbayes-doc_3.2.7a-7_all.deb ... 317s Unpacking mrbayes-doc (3.2.7a-7) ... 317s Selecting previously unselected package autopkgtest-satdep. 317s Preparing to unpack .../35-1-autopkgtest-satdep.deb ... 317s Unpacking autopkgtest-satdep (0) ... 317s Setting up libpciaccess0:arm64 (0.17-3) ... 317s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 317s Setting up ssh (1:9.6p1-3ubuntu2) ... 317s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 317s Setting up mrbayes-doc (3.2.7a-7) ... 317s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 317s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 317s Setting up libclc-17-dev (1:17.0.6-5build1) ... 317s Setting up libhwloc15:arm64 (2.10.0-1) ... 317s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 317s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 317s Setting up libclang-common-17-dev (1:17.0.6-5build1) ... 317s Setting up libclc-17 (1:17.0.6-5build1) ... 317s Setting up openmpi-common (4.1.6-5ubuntu1) ... 317s Setting up librdmacm1t64:arm64 (50.0-2) ... 317s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 317s Setting up libllvmspirvlib17:arm64 (17.0.0-4) ... 317s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 317s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 317s Setting up libfabric1:arm64 (1.17.0-3) ... 317s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 317s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 317s Setting up libclang-cpp17 (1:17.0.6-5build1) ... 317s Setting up libhsakmt1:arm64 (5.7.0-1) ... 317s Setting up mesa-opencl-icd:arm64 (24.0.1-1ubuntu1) ... 317s Setting up libpmix2:arm64 (5.0.1-4) ... 317s Setting up libhmsbeagle1v5:arm64 (3.1.2+dfsg-13) ... 317s Setting up mrbayes (3.2.7a-7) ... 317s Setting up libhsa-runtime64-1 (5.7.1-1) ... 317s Setting up libamdhip64-5 (5.2.3-12) ... 317s Setting up libucx0:arm64 (1.16.0+ds-4) ... 317s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 317s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 317s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 317s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 317s Setting up mpi-default-bin (1.15) ... 317s Setting up mrbayes-mpi (3.2.7a-7) ... 317s Setting up autopkgtest-satdep (0) ... 317s Processing triggers for man-db (2.12.0-3) ... 317s Processing triggers for libc-bin (2.39-0ubuntu2) ... 320s (Reading database ... 76660 files and directories currently installed.) 320s Removing autopkgtest-satdep (0) ... 321s autopkgtest [22:47:15]: test run-unit-test: [----------------------- 321s 321s 321s MrBayes 3.2.7a aarch64 321s 321s (Bayesian Analysis of Phylogeny) 321s 321s Distributed under the GNU General Public License 321s 321s 321s Type "help" or "help " for information 321s on the commands that are available. 321s 321s Type "about" for authorship and general 321s information about the program. 321s 321s 321s 321s Executing file "avian_ovomucoids.nex" 321s DOS line termination 321s Longest line length = 129 321s Parsing file 321s Expecting NEXUS formatted file 321s Reading data block 321s Allocated taxon set 321s Allocated matrix 321s Defining new matrix with 89 taxa and 88 characters 321s Data is Protein 321s Missing data coded as ? 321s Gaps coded as - 321s Matching characters coded as . 321s Taxon 1 -> Struthio_camelus 321s Taxon 2 -> Rhea_americana 321s Taxon 3 -> Pterocnemia_pennata 321s Taxon 4 -> Casuarius_casuarius 321s Taxon 5 -> Dromaius_novaehollandiae 321s Taxon 6 -> Nothoprocta_cinerascens 321s Taxon 7 -> Eudromia_elegans 321s Taxon 8 -> Pygoscelis_adeliae_f 321s Taxon 9 -> Pygoscelis_adeliae_y 321s Taxon 10 -> Spheniscus_humboldti 321s Taxon 11 -> Phalacrocorax_sulcirostris 321s Taxon 12 -> Anhinga_novaehollandeae 321s Taxon 13 -> Nycticorax_nycticorax 321s Taxon 14 -> Chauna_chavaria 321s Taxon 15 -> Anseranas_semipalmata 321s Taxon 16 -> Dendrocygna_arcuata 321s Taxon 17 -> Dendrocygna_autumnalis 321s Taxon 18 -> Dendrocygna_eytoni_d 321s Taxon 19 -> Dendrocygna_eytoni_e 321s Taxon 20 -> Dendrocygna_viduata 321s Taxon 21 -> Coscoroba_coscoroba 321s Taxon 22 -> Cygnus_atratus 321s Taxon 23 -> Goose 321s Taxon 24 -> Anser_indicus 321s Taxon 25 -> Branta_canadensis 321s Taxon 26 -> Cereopsis_novaehollandiae 321s Taxon 27 -> Chloephaga_picta 321s Taxon 28 -> Duck 321s Taxon 29 -> Anas_platyrhynchos 321s Taxon 30 -> Megapodius_freycinet 321s Taxon 31 -> Leipoa_ocellata 321s Taxon 32 -> Ortalis_vetula 321s Taxon 33 -> Penelope_jacquacu 321s Taxon 34 -> Penelope_superciliaris 321s Taxon 35 -> Bonasa_umbellus 321s Taxon 36 -> Tympanuchus_cupido 321s Taxon 37 -> Oreortyx_pictus 321s Taxon 38 -> Callipepla_squamata_n 321s Taxon 39 -> Callipepla_squamata_s 321s Taxon 40 -> Lophortyx_californicus 321s Taxon 41 -> Colinus_virginianus 321s Taxon 42 -> Cyrtonyx_montezumae_l 321s Taxon 43 -> Cyrtonyx_montezumae_s 321s Taxon 44 -> Alectoris_chukar 321s Taxon 45 -> Alectoris_rufa 321s Taxon 46 -> Francolinus_afer 321s Taxon 47 -> Francolinus_erckelii 321s Taxon 48 -> Francolinus_coqui_v 321s Taxon 49 -> Francolinus_coqui_a 321s Taxon 50 -> Francolinus_francolinus_a 321s Taxon 51 -> Francolinus_francolinus_v 321s Taxon 52 -> Francolinus_pondicerianus 321s Taxon 53 -> Perdix_perdix 321s Taxon 54 -> Coturnix_delegorguei 321s Taxon 55 -> Coturnix_coturnix_japonica_1 321s Taxon 56 -> Coturnix_coturnix_japonica_2 321s Taxon 57 -> Arborophilia_torqueola 321s Taxon 58 -> Bambusicola_thoracica 321s Taxon 59 -> Tragopan_satyra 321s Taxon 60 -> Tragopan_temmincki 321s Taxon 61 -> Lophophorus_impejanus 321s Taxon 62 -> Crossoptilon_auritum 321s Taxon 63 -> Lophura_edwardsi 321s Taxon 64 -> Lophura_ignita 321s Taxon 65 -> Gallus_gallus 321s Taxon 66 -> Grey_jungle_fowl 321s Taxon 67 -> Phasianus_colchicus 321s Taxon 68 -> Syrmaticus_ellioti 321s Taxon 69 -> Syrmaticus_reevesii 321s Taxon 70 -> Chrysolophus_amherstiae 321s Taxon 71 -> Polyplectron_bicalcaratum 321s Taxon 72 -> Argusianus_argus_argus 321s Taxon 73 -> Pavo_cristatus 321s Taxon 74 -> Afropavo_congensis 321s Taxon 75 -> Numida_meleagris 321s Taxon 76 -> Acryllium_vulturinum 321s Taxon 77 -> Meleagris_gallopavo 321s Taxon 78 -> Grus_carunculatus 321s Taxon 79 -> Anthropoides_virgo 321s Taxon 80 -> Grus_vipio 321s Taxon 81 -> Fulica_atra 321s Taxon 82 -> Vanellus_spinosus 321s Taxon 83 -> Larus_rudibundus 321s Taxon 84 -> Turnix_sylvatica 321s Taxon 85 -> Gallirallus_australis 321s Taxon 86 -> Geococcyx_californianus 321s Taxon 87 -> Dacelo_novaeguineae 321s Taxon 88 -> Carpococcyx_renauldi 321s Taxon 89 -> Podargus_strigoides 321s Successfully read matrix 321s Setting default partition (does not divide up characters) 321s Setting model defaults 321s Seed (for generating default start values) = 1710888435 321s Setting output file names to "avian_ovomucoids.nex.run." 321s Exiting data block 321s Reached end of file 321s 321s Tasks completed, exiting program because mode is noninteractive 321s To return control to the command line after completion of file processing, 321s set mode to interactive with 'mb -i ' (i is for interactive) 321s or use 'set mode=interactive' 321s 321s 321s 321s MrBayes 3.2.7a aarch64 321s 321s (Bayesian Analysis of Phylogeny) 321s 321s Distributed under the GNU General Public License 321s 321s 321s Type "help" or "help " for information 321s on the commands that are available. 321s 321s Type "about" for authorship and general 321s information about the program. 321s 321s 321s 321s Executing file "codon.nex" 321s DOS line termination 321s Longest line length = 88 321s Parsing file 321s Expecting NEXUS formatted file 321s Reading mrbayes block 321s Setting autoclose to yes 321s Setting nowarnings to yes 321s 321s Executing file "replicase.nex"... 321s 321s DOS line termination 321s Longest line length = 970 321s Parsing file 321s Expecting NEXUS formatted file 321s Reading data block 321s Allocated taxon set 321s Allocated matrix 321s Defining new matrix with 9 taxa and 720 characters 321s Data is Rna 321s Data matrix is not interleaved 321s Gaps coded as - 321s Missing data coded as ? 321s Taxon 1 -> FR 321s Taxon 2 -> MS2 321s Taxon 3 -> GA 321s Taxon 4 -> SP 321s Taxon 5 -> NL95 321s Taxon 6 -> M11 321s Taxon 7 -> MX1 321s Taxon 8 -> QB 321s Taxon 9 -> PP7 321s Successfully read matrix 321s Setting default partition (does not divide up characters) 321s Setting model defaults 321s Seed (for generating default start values) = 1710888435 321s Setting output file names to "replicase.nex.run." 321s Exiting data block 321s Reached end of file 321s 321s Returning execution to calling file ... 321s 321s Setting Nucmodel to Codon 321s Set state frequency prior to default 321s Successfully set likelihood model parameters 321s Setting Nucmodel to Codon 321s Set state frequency prior to default 321s Setting Omegavar to Ny98 321s Successfully set likelihood model parameters 321s Reporting positive selection (if applicable) 321s Reporting site omega values (if applicable) 321s Setting Nucmodel to Codon 321s Set state frequency prior to default 321s Setting Omegavar to M3 321s Successfully set likelihood model parameters 321s Reporting positive selection (if applicable) 321s Setting print frequency to 10 321s Successfully set chain parameters 321s Exiting mrbayes block 321s Reached end of file 321s 321s Tasks completed, exiting program because mode is noninteractive 321s To return control to the command line after completion of file processing, 321s set mode to interactive with 'mb -i ' (i is for interactive) 321s or use 'set mode=interactive' 321s 321s 321s 321s MrBayes 3.2.7a aarch64 321s 321s (Bayesian Analysis of Phylogeny) 321s 321s Distributed under the GNU General Public License 321s 321s 321s Type "help" or "help " for information 321s on the commands that are available. 321s 321s Type "about" for authorship and general 321s information about the program. 321s 321s 321s 321s Executing file "cynmix.nex" 321s DOS line termination 321s Longest line length = 217 321s Parsing file 321s Expecting NEXUS formatted file 321s Reading data block 321s Allocated taxon set 321s Allocated matrix 321s Defining new matrix with 32 taxa and 3246 characters 321s Data is Mixed 321s Data for partition 1 is Standard 321s Data for partition 2 is Dna 321s There are a total of 2 default data divisions 321s Data matrix is interleaved 321s Gaps coded as - 321s Missing data coded as ? 321s Taxon 1 -> Ibalia 321s Taxon 2 -> Synergus 321s Taxon 3 -> Periclistus 321s Taxon 4 -> Ceroptres 321s Taxon 5 -> Synophromorpha 321s Taxon 6 -> Xestophanes 321s Taxon 7 -> Diastrophus 321s Taxon 8 -> Gonaspis 321s Taxon 9 -> Liposthenes_gle 321s Taxon 10 -> Liposthenes_ker 321s Taxon 11 -> Antistrophus 321s Taxon 12 -> Rhodus 321s Taxon 13 -> Hedickiana 321s Taxon 14 -> Neaylax 321s Taxon 15 -> Isocolus 321s Taxon 16 -> Aulacidea 321s Taxon 17 -> Panteliella 321s Taxon 18 -> Barbotinia 321s Taxon 19 -> Aylax 321s Taxon 20 -> Iraella 321s Taxon 21 -> Timaspis 321s Taxon 22 -> Phanacis_1 321s Taxon 23 -> Phanacis_2 321s Taxon 24 -> Eschatocerus 321s Taxon 25 -> Diplolepis 321s Taxon 26 -> Pediaspis 321s Taxon 27 -> Plagiotrochus 321s Taxon 28 -> Andricus 321s Taxon 29 -> Neuroterus 321s Taxon 30 -> Biorhiza 321s Taxon 31 -> Parnips 321s Taxon 32 -> Paramblynotus 321s Successfully read matrix 321s Matrix contains polymorphisms, interpreted as ambiguity 321s Setting default partition, dividing characters into 2 parts 321s Setting model defaults 321s Seed (for generating default start values) = 1710888435 321s Setting output file names to "cynmix.nex.run." 321s Exiting data block 321s Reading mrbayes block 321s Defining charset called 'morphology' 321s Defining charset called 'COI' 321s Defining charset called 'EF1a' 321s Defining charset called 'LWRh' 321s Defining charset called '28S' 321s Defining partition called 'favored' 321s Exiting mrbayes block 321s Reached end of file 321s 321s Tasks completed, exiting program because mode is noninteractive 321s To return control to the command line after completion of file processing, 321s set mode to interactive with 'mb -i ' (i is for interactive) 321s or use 'set mode=interactive' 321s 321s 321s 321s MrBayes 3.2.7a aarch64 321s 321s (Bayesian Analysis of Phylogeny) 321s 321s Distributed under the GNU General Public License 321s 321s 321s Type "help" or "help " for information 321s on the commands that are available. 321s 321s Type "about" for authorship and general 321s information about the program. 321s 321s 321s 321s Executing file "finch.nex" 321s DOS line termination 321s Longest line length = 665 321s Parsing file 321s Expecting NEXUS formatted file 321s Reading data block 321s Allocated taxon set 321s Allocated matrix 321s Defining new matrix with 4 taxa and 16119 characters 321s Data is Dna 321s Gaps coded as - 321s Missing data coded as ? 321s Matching characters coded as . 321s Taxon 1 -> Q097 321s Taxon 2 -> W097 321s Taxon 3 -> B097 321s Taxon 4 -> O097 321s Successfully read matrix 321s Setting default partition (does not divide up characters) 321s Setting model defaults 321s Seed (for generating default start values) = 1710888435 321s Setting output file names to "finch.nex.run." 321s Exiting data block 321s Reading mrbayes block 321s Setting autoclose to yes 321s Setting nowarnings to yes 321s Setting outgroup to taxon "O097" 321s Defining charset called 'locus097' 321s Defining charset called 'locus098' 321s Defining charset called 'locus118' 321s Defining charset called 'locus119' 321s Defining charset called 'locus120' 321s Defining charset called 'locus122' 321s Defining charset called 'locus130' 321s Defining charset called 'locus104' 321s Defining charset called 'locus129' 321s Defining charset called 'locus143' 321s Defining charset called 'locus146' 321s Defining charset called 'locus111' 321s Defining charset called 'locus135' 321s Defining charset called 'locus148' 321s Defining charset called 'locus182' 321s Defining charset called 'locus200' 321s Defining charset called 'locus209' 321s Defining charset called 'locusB098' 321s Defining charset called 'locus184' 321s Defining charset called 'locus185' 321s Defining charset called 'locus186' 321s Defining charset called 'locus187' 321s Defining charset called 'locus188' 321s Defining charset called 'locus192' 321s Defining charset called 'locus193' 321s Defining charset called 'locus195' 321s Defining charset called 'locus198' 321s Defining charset called 'locus199' 321s Defining charset called 'locusB200' 321s Defining charset called 'locus103' 321s Defining partition called 'genes' 321s Setting genes as the partition, dividing characters into 30 parts. 321s Setting model defaults 321s Seed (for generating default start values) = 41996859 321s Defining speciespartition called 'test' 321s Setting test as the speciespartition, dividing taxa into 4 species. 321s Setting model defaults 321s Seed (for generating default start values) = 1705947507 321s Unlinking 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 1 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 2 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 3 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 4 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 5 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 6 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 7 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 8 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 9 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 10 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 11 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 12 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 13 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 14 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 15 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 16 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 17 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 18 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 19 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 20 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 21 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 22 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 23 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 24 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 25 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 26 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 27 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 28 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 29 321s Setting Brlenspr to Clock:Speciestreecoalescence for partition 30 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Topologypr to Speciestree for partition 1 321s Setting Topologypr to Speciestree for partition 2 321s Setting Topologypr to Speciestree for partition 3 321s Setting Topologypr to Speciestree for partition 4 321s Setting Topologypr to Speciestree for partition 5 321s Setting Topologypr to Speciestree for partition 6 321s Setting Topologypr to Speciestree for partition 7 321s Setting Topologypr to Speciestree for partition 8 321s Setting Topologypr to Speciestree for partition 9 321s Setting Topologypr to Speciestree for partition 10 321s Setting Topologypr to Speciestree for partition 11 321s Setting Topologypr to Speciestree for partition 12 321s Setting Topologypr to Speciestree for partition 13 321s Setting Topologypr to Speciestree for partition 14 321s Setting Topologypr to Speciestree for partition 15 321s Setting Topologypr to Speciestree for partition 16 321s Setting Topologypr to Speciestree for partition 17 321s Setting Topologypr to Speciestree for partition 18 321s Setting Topologypr to Speciestree for partition 19 321s Setting Topologypr to Speciestree for partition 20 321s Setting Topologypr to Speciestree for partition 21 321s Setting Topologypr to Speciestree for partition 22 321s Setting Topologypr to Speciestree for partition 23 321s Setting Topologypr to Speciestree for partition 24 321s Setting Topologypr to Speciestree for partition 25 321s Setting Topologypr to Speciestree for partition 26 321s Setting Topologypr to Speciestree for partition 27 321s Setting Topologypr to Speciestree for partition 28 321s Setting Topologypr to Speciestree for partition 29 321s Setting Topologypr to Speciestree for partition 30 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Popvarpr to Variable for partition 1 321s Setting Popvarpr to Variable for partition 2 321s Setting Popvarpr to Variable for partition 3 321s Setting Popvarpr to Variable for partition 4 321s Setting Popvarpr to Variable for partition 5 321s Setting Popvarpr to Variable for partition 6 321s Setting Popvarpr to Variable for partition 7 321s Setting Popvarpr to Variable for partition 8 321s Setting Popvarpr to Variable for partition 9 321s Setting Popvarpr to Variable for partition 10 321s Setting Popvarpr to Variable for partition 11 321s Setting Popvarpr to Variable for partition 12 321s Setting Popvarpr to Variable for partition 13 321s Setting Popvarpr to Variable for partition 14 321s Setting Popvarpr to Variable for partition 15 321s Setting Popvarpr to Variable for partition 16 321s Setting Popvarpr to Variable for partition 17 321s Setting Popvarpr to Variable for partition 18 321s Setting Popvarpr to Variable for partition 19 321s Setting Popvarpr to Variable for partition 20 321s Setting Popvarpr to Variable for partition 21 321s Setting Popvarpr to Variable for partition 22 321s Setting Popvarpr to Variable for partition 23 321s Setting Popvarpr to Variable for partition 24 321s Setting Popvarpr to Variable for partition 25 321s Setting Popvarpr to Variable for partition 26 321s Setting Popvarpr to Variable for partition 27 321s Setting Popvarpr to Variable for partition 28 321s Setting Popvarpr to Variable for partition 29 321s Setting Popvarpr to Variable for partition 30 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 1 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 2 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 3 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 4 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 5 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 6 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 7 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 8 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 9 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 10 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 11 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 12 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 13 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 14 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 15 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 16 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 17 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 18 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 19 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 20 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 21 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 22 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 23 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 24 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 25 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 26 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 27 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 28 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 29 321s Setting Popsizepr to Gamma(1.00,100.00) for partition 30 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Exiting mrbayes block 321s Reached end of file 321s 321s Tasks completed, exiting program because mode is noninteractive 321s To return control to the command line after completion of file processing, 321s set mode to interactive with 'mb -i ' (i is for interactive) 321s or use 'set mode=interactive' 321s 321s 321s 321s MrBayes 3.2.7a aarch64 321s 321s (Bayesian Analysis of Phylogeny) 321s 321s Distributed under the GNU General Public License 321s 321s 321s Type "help" or "help " for information 321s on the commands that are available. 321s 321s Type "about" for authorship and general 321s information about the program. 321s 321s 321s 321s Executing file "hymfossil.nex" 321s UNIX line termination 321s Longest line length = 1117 321s Parsing file 321s Expecting NEXUS formatted file 321s Reading data block 321s Allocated taxon set 321s Allocated matrix 321s Defining new matrix with 114 taxa and 5449 characters 321s Data is Mixed 321s Data for partition 1 is Standard 321s Data for partition 2 is Dna 321s There are a total of 2 default data divisions 321s Data matrix is interleaved 321s Gaps coded as - 321s Missing data coded as ? 321s Taxon 1 -> Orthoptera 321s Taxon 2 -> Paraneoptera 321s Taxon 3 -> Chrysopidae 321s Taxon 4 -> Raphidioptera 321s Taxon 5 -> Coleo_Polyphaga 321s Taxon 6 -> Coleo_Adephaga 321s Taxon 7 -> Lepid_Micropterigidae 321s Taxon 8 -> Lepid_Papilionidae 321s Taxon 9 -> Mecoptera 321s Taxon 10 -> Xyela 321s Taxon 11 -> Macroxyela 321s Taxon 12 -> Runaria 321s Taxon 13 -> Paremphytus 321s Taxon 14 -> Blasticotoma 321s Taxon 15 -> Tenthredo 321s Taxon 16 -> Aglaostigma 321s Taxon 17 -> Dolerus 321s Taxon 18 -> Selandria 321s Taxon 19 -> Strongylogaster 321s Taxon 20 -> Monophadnoides 321s Taxon 21 -> Metallus 321s Taxon 22 -> Athalia 321s Taxon 23 -> Taxonus 321s Taxon 24 -> Hoplocampa 321s Taxon 25 -> Nematinus 321s Taxon 26 -> Nematus 321s Taxon 27 -> Cladius 321s Taxon 28 -> Monoctenus 321s Taxon 29 -> Gilpinia 321s Taxon 30 -> Diprion 321s Taxon 31 -> Cimbicinae 321s Taxon 32 -> Abia 321s Taxon 33 -> Corynis 321s Taxon 34 -> Arge 321s Taxon 35 -> Sterictiphora 321s Taxon 36 -> Perga 321s Taxon 37 -> Phylacteophaga 321s Taxon 38 -> Lophyrotoma 321s Taxon 39 -> Acordulecera 321s Taxon 40 -> Decameria 321s Taxon 41 -> Neurotoma 321s Taxon 42 -> Onycholyda 321s Taxon 43 -> Pamphilius 321s Taxon 44 -> Cephalcia 321s Taxon 45 -> Acantholyda 321s Taxon 46 -> Megalodontesc 321s Taxon 47 -> Megalodontessk 321s Taxon 48 -> Cephus 321s Taxon 49 -> Calameuta 321s Taxon 50 -> Hartigia 321s Taxon 51 -> Syntexis 321s Taxon 52 -> Sirex 321s Taxon 53 -> Xeris 321s Taxon 54 -> Urocerus 321s Taxon 55 -> Tremex 321s Taxon 56 -> Xiphydria 321s Taxon 57 -> Orussus 321s Taxon 58 -> StephanidaeA 321s Taxon 59 -> StephanidaeB 321s Taxon 60 -> Megalyra 321s Taxon 61 -> Trigonalidae 321s Taxon 62 -> Chalcidoidea 321s Taxon 63 -> Evanioidea 321s Taxon 64 -> Ichneumonidae 321s Taxon 65 -> Cynipoidea 321s Taxon 66 -> ApoideaA 321s Taxon 67 -> ApoideaB 321s Taxon 68 -> ApoideaC 321s Taxon 69 -> Vespidae 321s Taxon 70 -> Triassoxyela 321s Taxon 71 -> Asioxyela 321s Taxon 72 -> Nigrimonticola 321s Taxon 73 -> Gigantoxyelinae 321s Taxon 74 -> Spathoxyela 321s Taxon 75 -> Xyela_mesozoica 321s Taxon 76 -> Angaridyela 321s Taxon 77 -> Xyelotoma 321s Taxon 78 -> Undatoma 321s Taxon 79 -> Dahuratoma 321s Taxon 80 -> Mesolyda 321s Taxon 81 -> Turgidontes 321s Taxon 82 -> Aulidontes 321s Taxon 83 -> Protosirex 321s Taxon 84 -> Aulisca 321s Taxon 85 -> Anaxyela 321s Taxon 86 -> Syntexyela 321s Taxon 87 -> Karatavites 321s Taxon 88 -> Stephanogaster 321s Taxon 89 -> Leptephialtites 321s Taxon 90 -> Cleistogaster 321s Taxon 91 -> Sepulca 321s Taxon 92 -> Onochoius 321s Taxon 93 -> Ghilarella 321s Taxon 94 -> Paroryssus 321s Taxon 95 -> Praeoryssus 321s Taxon 96 -> Mesorussus 321s Taxon 97 -> Trematothorax 321s Taxon 98 -> Thoracotrema 321s Taxon 99 -> Prosyntexis 321s Taxon 100 -> Kulbastavia 321s Taxon 101 -> Brachysyntexis 321s Taxon 102 -> Symphytopterus 321s Taxon 103 -> Eoxyela 321s Taxon 104 -> Liadoxyela 321s Taxon 105 -> Abrotoxyela 321s Taxon 106 -> Pseudoxyelocerus 321s Taxon 107 -> Palaeathalia 321s Taxon 108 -> Ferganolyda 321s Taxon 109 -> PamphiliidaeUndesc 321s Taxon 110 -> Rudisiricius 321s Taxon 111 -> Sogutia 321s Taxon 112 -> Xyelula 321s Taxon 113 -> Brigittepterus 321s Taxon 114 -> Grimmaratavites 321s Successfully read matrix 321s Matrix contains polymorphisms, interpreted as ambiguity 321s Setting default partition, dividing characters into 2 parts 321s Setting model defaults 321s Seed (for generating default start values) = 1710888435 321s WARNING: There are 2 characters incompatible with the specified 321s coding bias. These characters will be excluded. 321s Setting output file names to "hymfossil.nex.run." 321s Exiting data block 321s Reading mrbayes block 321s Defining charset called 'MV' 321s Defining charset called 'MS' 321s Defining charset called '12S' 321s Defining charset called '16S' 321s Defining charset called '18S' 321s Defining charset called '28S' 321s Defining charset called 'CO1' 321s Defining charset called 'CO1_12' 321s Defining charset called 'CO1_3' 321s Defining charset called 'Ef1aF2' 321s Defining charset called 'Ef1aF2_12' 321s Defining charset called 'Ef1aF2_3' 321s Defining charset called 'Ef1aF1' 321s Defining charset called 'Ef1aF1_12' 321s Defining charset called 'Ef1aF1_3' 321s Defining charset called 'Ef1a' 321s Defining charset called 'morph_ordered' 321s Defining charset called 'morph_excluded' 321s Defining charset called 'morph_constant' 321s Setting characters to ordered 321s Ctype was applied to 44 standard characters 321s Excluding character(s) 321s WARNING: There are 2 characters incompatible with the specified 321s coding bias. These characters will be excluded. 321s Excluding character(s) 321s Setting outgroup to taxon "Orthoptera" 321s Defining taxset called 'fossils' 321s Defining taxset called 'nomorphodata' 321s Defining taxset called 'nomolecudata' 321s Defining constraint called 'root' 321s Defining constraint called 'Hymenoptera' 321s Defining constraint called 'Holometabola' 321s Defining constraint called 'HolometabolaWithFossils' 321s Defining constraint called 'Pamphilioidea' 321s Defining constraint called 'Siricoidea' 321s Defining constraint called 'Apocrita' 321s Defining constraint called 'Xyelidae' 321s Defining constraint called 'Tenthredinidae' 321s Defining constraint called 'Vespina' 321s Defining partition called 'without_CO1_3' 321s Excluding character(s) 321s Setting without_CO1_3 as the partition, dividing characters into 7 parts. 321s Setting model defaults 321s Seed (for generating default start values) = 479820825 321s Enabling Coding Variable for partition 1 321s Setting Rates to Gamma for partition 1 321s Successfully set likelihood model parameters to 321s partition 1 (if applicable) 321s Setting Nucmodel to 4by4 for partition 2 321s Setting Nucmodel to 4by4 for partition 3 321s Setting Nucmodel to 4by4 for partition 5 321s Setting Nucmodel to 4by4 for partition 6 321s Setting Nucmodel to 4by4 for partition 7 321s Set state frequency prior to default 321s Setting Nst to 6 for partition 2 321s Setting Nst to 6 for partition 3 321s Setting Nst to 6 for partition 5 321s Setting Nst to 6 for partition 6 321s Setting Nst to 6 for partition 7 321s Setting Rates to Gamma for partition 2 321s Setting Rates to Gamma for partition 3 321s Setting Rates to Gamma for partition 5 321s Setting Rates to Gamma for partition 6 321s Setting Rates to Gamma for partition 7 321s Setting Covarion to No for partition 2 321s Setting Covarion to No for partition 3 321s Setting Covarion to No for partition 5 321s Setting Covarion to No for partition 6 321s Setting Covarion to No for partition 7 321s Successfully set likelihood model parameters to 321s partitions 2, 3, 5, 6, and 7 (if applicable) 321s Setting Nucmodel to 4by4 for partition 4 321s Set state frequency prior to default 321s Setting Nst to 6 for partition 4 321s Setting Rates to Gamma for partition 4 321s Setting Covarion to No for partition 4 321s Successfully set likelihood model parameters to 321s partition 4 (if applicable) 321s Setting Statefreqpr to Fixed(Equal) for partition 4 321s Successfully set prior model parameters to 321s partition 4 (if applicable) 321s Unlinking 321s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 1 321s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 2 321s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 3 321s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 4 321s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 5 321s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 6 321s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting age of taxon 'Triassoxyela' to Uniform(228.00,242.00) 321s Setting age of taxon 'Asioxyela' to Uniform(228.00,242.00) 321s Setting age of taxon 'Nigrimonticola' to Uniform(152.00,163.00) 321s Setting age of taxon 'Gigantoxyelinae' to Uniform(125.00,145.00) 321s Setting age of taxon 'Spathoxyela' to Uniform(125.00,145.00) 321s Setting age of taxon 'Xyela_mesozoica' to Uniform(125.00,145.00) 321s Setting age of taxon 'Angaridyela' to Uniform(125.00,145.00) 321s Setting age of taxon 'Xyelotoma' to Uniform(152.00,163.00) 321s Setting age of taxon 'Undatoma' to Uniform(145.00,152.00) 321s Setting age of taxon 'Dahuratoma' to Uniform(133.00,135.00) 321s Setting age of taxon 'Mesolyda' to Uniform(152.00,163.00) 321s Setting age of taxon 'Turgidontes' to Uniform(133.00,135.00) 321s Setting age of taxon 'Aulidontes' to Uniform(152.00,163.00) 321s Setting age of taxon 'Protosirex' to Uniform(152.00,163.00) 321s Setting age of taxon 'Aulisca' to Uniform(152.00,163.00) 321s Setting age of taxon 'Anaxyela' to Uniform(152.00,163.00) 321s Setting age of taxon 'Syntexyela' to Uniform(152.00,163.00) 321s Setting age of taxon 'Karatavites' to Uniform(152.00,163.00) 321s Setting age of taxon 'Stephanogaster' to Uniform(152.00,163.00) 321s Setting age of taxon 'Leptephialtites' to Uniform(152.00,163.00) 321s Setting age of taxon 'Cleistogaster' to Uniform(168.00,191.00) 321s Setting age of taxon 'Sepulca' to Uniform(152.00,163.00) 321s Setting age of taxon 'Onochoius' to Uniform(125.00,145.00) 321s Setting age of taxon 'Ghilarella' to Uniform(113.00,125.00) 321s Setting age of taxon 'Paroryssus' to Uniform(152.00,163.00) 321s Setting age of taxon 'Praeoryssus' to Uniform(152.00,163.00) 321s Setting age of taxon 'Mesorussus' to Uniform(94.00,100.00) 321s Setting age of taxon 'Trematothorax' to Uniform(125.00,145.00) 321s Setting age of taxon 'Thoracotrema' to Uniform(113.00,125.00) 321s Setting age of taxon 'Prosyntexis' to Uniform(80.00,86.00) 321s Setting age of taxon 'Kulbastavia' to Uniform(152.00,163.00) 321s Setting age of taxon 'Brachysyntexis' to Uniform(152.00,163.00) 321s Setting age of taxon 'Symphytopterus' to Uniform(152.00,163.00) 321s Setting age of taxon 'Eoxyela' to Uniform(168.00,191.00) 321s Setting age of taxon 'Liadoxyela' to Uniform(168.00,191.00) 321s Setting age of taxon 'Abrotoxyela' to Uniform(161.00,168.00) 321s Setting age of taxon 'Pseudoxyelocerus' to Uniform(182.00,183.00) 321s Setting age of taxon 'Palaeathalia' to Uniform(125.00,145.00) 321s Setting age of taxon 'Ferganolyda' to Uniform(168.00,191.00) 321s Setting age of taxon 'PamphiliidaeUndesc' to Uniform(161.00,168.00) 321s Setting age of taxon 'Rudisiricius' to Uniform(161.00,168.00) 321s Setting age of taxon 'Sogutia' to Uniform(174.00,201.00) 321s Setting age of taxon 'Xyelula' to Uniform(182.00,183.00) 321s Setting age of taxon 'Brigittepterus' to Uniform(182.00,183.00) 321s Setting age of taxon 'Grimmaratavites' to Uniform(182.00,183.00) 321s Excluding taxa 321s Setting Brlenspr to Clock:Fossilization for partition 1 321s Setting Brlenspr to Clock:Fossilization for partition 2 321s Setting Brlenspr to Clock:Fossilization for partition 3 321s Setting Brlenspr to Clock:Fossilization for partition 4 321s Setting Brlenspr to Clock:Fossilization for partition 5 321s Setting Brlenspr to Clock:Fossilization for partition 6 321s Setting Brlenspr to Clock:Fossilization for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Speciationpr to Exponential(20.00) for partition 1 321s Setting Speciationpr to Exponential(20.00) for partition 2 321s Setting Speciationpr to Exponential(20.00) for partition 3 321s Setting Speciationpr to Exponential(20.00) for partition 4 321s Setting Speciationpr to Exponential(20.00) for partition 5 321s Setting Speciationpr to Exponential(20.00) for partition 6 321s Setting Speciationpr to Exponential(20.00) for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Extinctionpr to Beta(1.00,1.00) for partition 1 321s Setting Extinctionpr to Beta(1.00,1.00) for partition 2 321s Setting Extinctionpr to Beta(1.00,1.00) for partition 3 321s Setting Extinctionpr to Beta(1.00,1.00) for partition 4 321s Setting Extinctionpr to Beta(1.00,1.00) for partition 5 321s Setting Extinctionpr to Beta(1.00,1.00) for partition 6 321s Setting Extinctionpr to Beta(1.00,1.00) for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Fossilizationpr to Beta(1.00,1.00) for partition 1 321s Setting Fossilizationpr to Beta(1.00,1.00) for partition 2 321s Setting Fossilizationpr to Beta(1.00,1.00) for partition 3 321s Setting Fossilizationpr to Beta(1.00,1.00) for partition 4 321s Setting Fossilizationpr to Beta(1.00,1.00) for partition 5 321s Setting Fossilizationpr to Beta(1.00,1.00) for partition 6 321s Setting Fossilizationpr to Beta(1.00,1.00) for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Sampleprob to 0.00050000 for partition 1 321s Setting Sampleprob to 0.00050000 for partition 2 321s Setting Sampleprob to 0.00050000 for partition 3 321s Setting Sampleprob to 0.00050000 for partition 4 321s Setting Sampleprob to 0.00050000 for partition 5 321s Setting Sampleprob to 0.00050000 for partition 6 321s Setting Sampleprob to 0.00050000 for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting SampleStrat to Diversity for partition 1 321s Setting SampleStrat to Diversity for partition 2 321s Setting SampleStrat to Diversity for partition 3 321s Setting SampleStrat to Diversity for partition 4 321s Setting SampleStrat to Diversity for partition 5 321s Setting SampleStrat to Diversity for partition 6 321s Setting SampleStrat to Diversity for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Topologypr to Constraints for partition 1 321s Setting Topologypr to Constraints for partition 2 321s Setting Topologypr to Constraints for partition 3 321s Setting Topologypr to Constraints for partition 4 321s Setting Topologypr to Constraints for partition 5 321s Setting Topologypr to Constraints for partition 6 321s Setting Topologypr to Constraints for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting age of constraint node 'root' to Offsetexponential(315.00,396.00) 321s Setting age of constraint node 'HolometabolaWithFossils' to Offsetexponential(302.00,396.00) 321s Setting Nodeagepr to Calibrated for partition 1 321s Setting Nodeagepr to Calibrated for partition 2 321s Setting Nodeagepr to Calibrated for partition 3 321s Setting Nodeagepr to Calibrated for partition 4 321s Setting Nodeagepr to Calibrated for partition 5 321s Setting Nodeagepr to Calibrated for partition 6 321s Setting Nodeagepr to Calibrated for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Clockvarpr to Igr for partition 1 321s Setting Clockvarpr to Igr for partition 2 321s Setting Clockvarpr to Igr for partition 3 321s Setting Clockvarpr to Igr for partition 4 321s Setting Clockvarpr to Igr for partition 5 321s Setting Clockvarpr to Igr for partition 6 321s Setting Clockvarpr to Igr for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Igrvarpr to Exponential(37.00) for partition 1 321s Setting Igrvarpr to Exponential(37.00) for partition 2 321s Setting Igrvarpr to Exponential(37.00) for partition 3 321s Setting Igrvarpr to Exponential(37.00) for partition 4 321s Setting Igrvarpr to Exponential(37.00) for partition 5 321s Setting Igrvarpr to Exponential(37.00) for partition 6 321s Setting Igrvarpr to Exponential(37.00) for partition 7 321s Successfully set prior model parameters to all 321s applicable data partitions 321s Setting Clockratepr to Lognormal(-7.10,0.50) 321s Setting Clockratepr to Lognormal(-7.10,0.50) 321s Setting Clockratepr to Lognormal(-7.10,0.50) 321s Setting Clockratepr to Lognormal(-7.10,0.50) 321s Setting Clockratepr to Lognormal(-7.10,0.50) 321s Setting Clockratepr to Lognormal(-7.10,0.50) 321s Setting Clockratepr to Lognormal(-7.10,0.50) 321s Successfully set prior model parameters to all 321s applicable data partitions 321s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 321s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 321s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 321s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 321s Setting number of runs to 4 321s Setting heating parameter to 0.070000 321s Setting number of generations to 100000000 321s Setting sample frequency to 1000 321s Setting print frequency to 10000 321s Setting diagnosing frequency to 50000 321s Setting chain output file names to "hymfossil.nex.run.

" 321s Successfully set chain parameters 321s Exiting mrbayes block 321s Reached end of file 321s 321s Tasks completed, exiting program because mode is noninteractive 321s To return control to the command line after completion of file processing, 321s set mode to interactive with 'mb -i ' (i is for interactive) 321s or use 'set mode=interactive' 321s 322s 322s 322s MrBayes 3.2.7a aarch64 322s 322s (Bayesian Analysis of Phylogeny) 322s 322s Distributed under the GNU General Public License 322s 322s 322s Type "help" or "help " for information 322s on the commands that are available. 322s 322s Type "about" for authorship and general 322s information about the program. 322s 322s 322s 322s Executing file "avian_ovomucoids.nex" 322s DOS line termination 322s Longest line length = 129 322s Parsing file 322s Expecting NEXUS formatted file 322s Reading data block 322s Allocated taxon set 322s Allocated matrix 322s Defining new matrix with 89 taxa and 88 characters 322s Data is Protein 322s Missing data coded as ? 322s Gaps coded as - 322s Matching characters coded as . 322s Taxon 1 -> Struthio_camelus 322s Taxon 2 -> Rhea_americana 322s Taxon 3 -> Pterocnemia_pennata 322s Taxon 4 -> Casuarius_casuarius 322s Taxon 5 -> Dromaius_novaehollandiae 322s Taxon 6 -> Nothoprocta_cinerascens 322s Taxon 7 -> Eudromia_elegans 322s Taxon 8 -> Pygoscelis_adeliae_f 322s Taxon 9 -> Pygoscelis_adeliae_y 322s Taxon 10 -> Spheniscus_humboldti 322s Taxon 11 -> Phalacrocorax_sulcirostris 322s Taxon 12 -> Anhinga_novaehollandeae 322s Taxon 13 -> Nycticorax_nycticorax 322s Taxon 14 -> Chauna_chavaria 322s Taxon 15 -> Anseranas_semipalmata 322s Taxon 16 -> Dendrocygna_arcuata 322s Taxon 17 -> Dendrocygna_autumnalis 322s Taxon 18 -> Dendrocygna_eytoni_d 322s Taxon 19 -> Dendrocygna_eytoni_e 322s Taxon 20 -> Dendrocygna_viduata 322s Taxon 21 -> Coscoroba_coscoroba 322s Taxon 22 -> Cygnus_atratus 322s Taxon 23 -> Goose 322s Taxon 24 -> Anser_indicus 322s Taxon 25 -> Branta_canadensis 322s Taxon 26 -> Cereopsis_novaehollandiae 322s Taxon 27 -> Chloephaga_picta 322s Taxon 28 -> Duck 322s Taxon 29 -> Anas_platyrhynchos 322s Taxon 30 -> Megapodius_freycinet 322s Taxon 31 -> Leipoa_ocellata 322s Taxon 32 -> Ortalis_vetula 322s Taxon 33 -> Penelope_jacquacu 322s Taxon 34 -> Penelope_superciliaris 322s Taxon 35 -> Bonasa_umbellus 322s Taxon 36 -> Tympanuchus_cupido 322s Taxon 37 -> Oreortyx_pictus 322s Taxon 38 -> Callipepla_squamata_n 322s Taxon 39 -> Callipepla_squamata_s 322s Taxon 40 -> Lophortyx_californicus 322s Taxon 41 -> Colinus_virginianus 322s Taxon 42 -> Cyrtonyx_montezumae_l 322s Taxon 43 -> Cyrtonyx_montezumae_s 322s Taxon 44 -> Alectoris_chukar 322s Taxon 45 -> Alectoris_rufa 322s Taxon 46 -> Francolinus_afer 322s Taxon 47 -> Francolinus_erckelii 322s Taxon 48 -> Francolinus_coqui_v 322s Taxon 49 -> Francolinus_coqui_a 322s Taxon 50 -> Francolinus_francolinus_a 322s Taxon 51 -> Francolinus_francolinus_v 322s Taxon 52 -> Francolinus_pondicerianus 322s Taxon 53 -> Perdix_perdix 322s Taxon 54 -> Coturnix_delegorguei 322s Taxon 55 -> Coturnix_coturnix_japonica_1 322s Taxon 56 -> Coturnix_coturnix_japonica_2 322s Taxon 57 -> Arborophilia_torqueola 322s Taxon 58 -> Bambusicola_thoracica 322s Taxon 59 -> Tragopan_satyra 322s Taxon 60 -> Tragopan_temmincki 322s Taxon 61 -> Lophophorus_impejanus 322s Taxon 62 -> Crossoptilon_auritum 322s Taxon 63 -> Lophura_edwardsi 322s Taxon 64 -> Lophura_ignita 322s Taxon 65 -> Gallus_gallus 322s Taxon 66 -> Grey_jungle_fowl 322s Taxon 67 -> Phasianus_colchicus 322s Taxon 68 -> Syrmaticus_ellioti 322s Taxon 69 -> Syrmaticus_reevesii 322s Taxon 70 -> Chrysolophus_amherstiae 322s Taxon 71 -> Polyplectron_bicalcaratum 322s Taxon 72 -> Argusianus_argus_argus 322s Taxon 73 -> Pavo_cristatus 322s Taxon 74 -> Afropavo_congensis 322s Taxon 75 -> Numida_meleagris 322s Taxon 76 -> Acryllium_vulturinum 322s Taxon 77 -> Meleagris_gallopavo 322s Taxon 78 -> Grus_carunculatus 322s Taxon 79 -> Anthropoides_virgo 322s Taxon 80 -> Grus_vipio 322s Taxon 81 -> Fulica_atra 322s Taxon 82 -> Vanellus_spinosus 322s Taxon 83 -> Larus_rudibundus 322s Taxon 84 -> Turnix_sylvatica 322s Taxon 85 -> Gallirallus_australis 322s Taxon 86 -> Geococcyx_californianus 322s Taxon 87 -> Dacelo_novaeguineae 322s Taxon 88 -> Carpococcyx_renauldi 322s Taxon 89 -> Podargus_strigoides 322s Successfully read matrix 322s Setting default partition (does not divide up characters) 322s Setting model defaults 322s Seed (for generating default start values) = 1710888436 322s Setting output file names to "avian_ovomucoids.nex.run." 322s Exiting data block 322s Reached end of file 322s 322s Tasks completed, exiting program because mode is noninteractive 322s To return control to the command line after completion of file processing, 322s set mode to interactive with 'mb -i ' (i is for interactive) 322s or use 'set mode=interactive' 322s 322s 322s 322s MrBayes 3.2.7a aarch64 322s 322s (Bayesian Analysis of Phylogeny) 322s 322s Distributed under the GNU General Public License 322s 322s 322s Type "help" or "help " for information 322s on the commands that are available. 322s 322s Type "about" for authorship and general 322s information about the program. 322s 322s 322s 322s Executing file "codon.nex" 322s DOS line termination 322s Longest line length = 88 322s Parsing file 322s Expecting NEXUS formatted file 322s Reading mrbayes block 322s Setting autoclose to yes 322s Setting nowarnings to yes 322s 322s Executing file "replicase.nex"... 322s 322s DOS line termination 322s Longest line length = 970 322s Parsing file 322s Expecting NEXUS formatted file 322s Reading data block 322s Allocated taxon set 322s Allocated matrix 322s Defining new matrix with 9 taxa and 720 characters 322s Data is Rna 322s Data matrix is not interleaved 322s Gaps coded as - 322s Missing data coded as ? 322s Taxon 1 -> FR 322s Taxon 2 -> MS2 322s Taxon 3 -> GA 322s Taxon 4 -> SP 322s Taxon 5 -> NL95 322s Taxon 6 -> M11 322s Taxon 7 -> MX1 322s Taxon 8 -> QB 322s Taxon 9 -> PP7 322s Successfully read matrix 322s Setting default partition (does not divide up characters) 322s Setting model defaults 322s Seed (for generating default start values) = 1710888436 322s Setting output file names to "replicase.nex.run." 322s Exiting data block 322s Reached end of file 322s 322s Returning execution to calling file ... 322s 322s Setting Nucmodel to Codon 322s Set state frequency prior to default 322s Successfully set likelihood model parameters 322s Setting Nucmodel to Codon 322s Set state frequency prior to default 322s Setting Omegavar to Ny98 322s Successfully set likelihood model parameters 322s Reporting positive selection (if applicable) 322s Reporting site omega values (if applicable) 322s Setting Nucmodel to Codon 322s Set state frequency prior to default 322s Setting Omegavar to M3 322s Successfully set likelihood model parameters 322s Reporting positive selection (if applicable) 322s Setting print frequency to 10 322s Successfully set chain parameters 322s Exiting mrbayes block 322s Reached end of file 322s 322s Tasks completed, exiting program because mode is noninteractive 322s To return control to the command line after completion of file processing, 322s set mode to interactive with 'mb -i ' (i is for interactive) 322s or use 'set mode=interactive' 322s 322s 322s 322s MrBayes 3.2.7a aarch64 322s 322s (Bayesian Analysis of Phylogeny) 322s 322s Distributed under the GNU General Public License 322s 322s 322s Type "help" or "help " for information 322s on the commands that are available. 322s 322s Type "about" for authorship and general 322s information about the program. 322s 322s 322s 322s Executing file "cynmix.nex" 322s DOS line termination 322s Longest line length = 217 322s Parsing file 322s Expecting NEXUS formatted file 322s Reading data block 322s Allocated taxon set 322s Allocated matrix 322s Defining new matrix with 32 taxa and 3246 characters 322s Data is Mixed 322s Data for partition 1 is Standard 322s Data for partition 2 is Dna 322s There are a total of 2 default data divisions 322s Data matrix is interleaved 322s Gaps coded as - 322s Missing data coded as ? 322s Taxon 1 -> Ibalia 322s Taxon 2 -> Synergus 322s Taxon 3 -> Periclistus 322s Taxon 4 -> Ceroptres 322s Taxon 5 -> Synophromorpha 322s Taxon 6 -> Xestophanes 322s Taxon 7 -> Diastrophus 322s Taxon 8 -> Gonaspis 322s Taxon 9 -> Liposthenes_gle 322s Taxon 10 -> Liposthenes_ker 322s Taxon 11 -> Antistrophus 322s Taxon 12 -> Rhodus 322s Taxon 13 -> Hedickiana 322s Taxon 14 -> Neaylax 322s Taxon 15 -> Isocolus 322s Taxon 16 -> Aulacidea 322s Taxon 17 -> Panteliella 322s Taxon 18 -> Barbotinia 322s Taxon 19 -> Aylax 322s Taxon 20 -> Iraella 322s Taxon 21 -> Timaspis 322s Taxon 22 -> Phanacis_1 322s Taxon 23 -> Phanacis_2 322s Taxon 24 -> Eschatocerus 322s Taxon 25 -> Diplolepis 322s Taxon 26 -> Pediaspis 322s Taxon 27 -> Plagiotrochus 322s Taxon 28 -> Andricus 322s Taxon 29 -> Neuroterus 322s Taxon 30 -> Biorhiza 322s Taxon 31 -> Parnips 322s Taxon 32 -> Paramblynotus 322s Successfully read matrix 322s Matrix contains polymorphisms, interpreted as ambiguity 322s Setting default partition, dividing characters into 2 parts 322s Setting model defaults 322s Seed (for generating default start values) = 1710888436 322s Setting output file names to "cynmix.nex.run." 322s Exiting data block 322s Reading mrbayes block 322s Defining charset called 'morphology' 322s Defining charset called 'COI' 322s Defining charset called 'EF1a' 322s Defining charset called 'LWRh' 322s Defining charset called '28S' 322s Defining partition called 'favored' 322s Exiting mrbayes block 322s Reached end of file 322s 322s Tasks completed, exiting program because mode is noninteractive 322s To return control to the command line after completion of file processing, 322s set mode to interactive with 'mb -i ' (i is for interactive) 322s or use 'set mode=interactive' 322s 322s 322s 322s MrBayes 3.2.7a aarch64 322s 322s (Bayesian Analysis of Phylogeny) 322s 322s Distributed under the GNU General Public License 322s 322s 322s Type "help" or "help " for information 322s on the commands that are available. 322s 322s Type "about" for authorship and general 322s information about the program. 322s 322s 322s 322s Executing file "finch.nex" 322s DOS line termination 322s Longest line length = 665 322s Parsing file 322s Expecting NEXUS formatted file 322s Reading data block 322s Allocated taxon set 322s Allocated matrix 322s Defining new matrix with 4 taxa and 16119 characters 322s Data is Dna 322s Gaps coded as - 322s Missing data coded as ? 322s Matching characters coded as . 322s Taxon 1 -> Q097 322s Taxon 2 -> W097 322s Taxon 3 -> B097 322s Taxon 4 -> O097 322s Successfully read matrix 322s Setting default partition (does not divide up characters) 322s Setting model defaults 322s Seed (for generating default start values) = 1710888436 322s Setting output file names to "finch.nex.run." 322s Exiting data block 322s Reading mrbayes block 322s Setting autoclose to yes 322s Setting nowarnings to yes 322s Setting outgroup to taxon "O097" 322s Defining charset called 'locus097' 322s Defining charset called 'locus098' 322s Defining charset called 'locus118' 322s Defining charset called 'locus119' 322s Defining charset called 'locus120' 322s Defining charset called 'locus122' 322s Defining charset called 'locus130' 322s Defining charset called 'locus104' 322s Defining charset called 'locus129' 322s Defining charset called 'locus143' 322s Defining charset called 'locus146' 322s Defining charset called 'locus111' 322s Defining charset called 'locus135' 322s Defining charset called 'locus148' 322s Defining charset called 'locus182' 322s Defining charset called 'locus200' 322s Defining charset called 'locus209' 322s Defining charset called 'locusB098' 322s Defining charset called 'locus184' 322s Defining charset called 'locus185' 322s Defining charset called 'locus186' 322s Defining charset called 'locus187' 322s Defining charset called 'locus188' 322s Defining charset called 'locus192' 322s Defining charset called 'locus193' 322s Defining charset called 'locus195' 322s Defining charset called 'locus198' 322s Defining charset called 'locus199' 322s Defining charset called 'locusB200' 322s Defining charset called 'locus103' 322s Defining partition called 'genes' 322s Setting genes as the partition, dividing characters into 30 parts. 322s Setting model defaults 322s Seed (for generating default start values) = 1499847737 322s Defining speciespartition called 'test' 322s Setting test as the speciespartition, dividing taxa into 4 species. 322s Setting model defaults 322s Seed (for generating default start values) = 695986363 322s Unlinking 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 1 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 2 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 3 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 4 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 5 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 6 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 7 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 8 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 9 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 10 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 11 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 12 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 13 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 14 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 15 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 16 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 17 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 18 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 19 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 20 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 21 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 22 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 23 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 24 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 25 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 26 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 27 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 28 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 29 322s Setting Brlenspr to Clock:Speciestreecoalescence for partition 30 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting Topologypr to Speciestree for partition 1 322s Setting Topologypr to Speciestree for partition 2 322s Setting Topologypr to Speciestree for partition 3 322s Setting Topologypr to Speciestree for partition 4 322s Setting Topologypr to Speciestree for partition 5 322s Setting Topologypr to Speciestree for partition 6 322s Setting Topologypr to Speciestree for partition 7 322s Setting Topologypr to Speciestree for partition 8 322s Setting Topologypr to Speciestree for partition 9 322s Setting Topologypr to Speciestree for partition 10 322s Setting Topologypr to Speciestree for partition 11 322s Setting Topologypr to Speciestree for partition 12 322s Setting Topologypr to Speciestree for partition 13 322s Setting Topologypr to Speciestree for partition 14 322s Setting Topologypr to Speciestree for partition 15 322s Setting Topologypr to Speciestree for partition 16 322s Setting Topologypr to Speciestree for partition 17 322s Setting Topologypr to Speciestree for partition 18 322s Setting Topologypr to Speciestree for partition 19 322s Setting Topologypr to Speciestree for partition 20 322s Setting Topologypr to Speciestree for partition 21 322s Setting Topologypr to Speciestree for partition 22 322s Setting Topologypr to Speciestree for partition 23 322s Setting Topologypr to Speciestree for partition 24 322s Setting Topologypr to Speciestree for partition 25 322s Setting Topologypr to Speciestree for partition 26 322s Setting Topologypr to Speciestree for partition 27 322s Setting Topologypr to Speciestree for partition 28 322s Setting Topologypr to Speciestree for partition 29 322s Setting Topologypr to Speciestree for partition 30 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting Popvarpr to Variable for partition 1 322s Setting Popvarpr to Variable for partition 2 322s Setting Popvarpr to Variable for partition 3 322s Setting Popvarpr to Variable for partition 4 322s Setting Popvarpr to Variable for partition 5 322s Setting Popvarpr to Variable for partition 6 322s Setting Popvarpr to Variable for partition 7 322s Setting Popvarpr to Variable for partition 8 322s Setting Popvarpr to Variable for partition 9 322s Setting Popvarpr to Variable for partition 10 322s Setting Popvarpr to Variable for partition 11 322s Setting Popvarpr to Variable for partition 12 322s Setting Popvarpr to Variable for partition 13 322s Setting Popvarpr to Variable for partition 14 322s Setting Popvarpr to Variable for partition 15 322s Setting Popvarpr to Variable for partition 16 322s Setting Popvarpr to Variable for partition 17 322s Setting Popvarpr to Variable for partition 18 322s Setting Popvarpr to Variable for partition 19 322s Setting Popvarpr to Variable for partition 20 322s Setting Popvarpr to Variable for partition 21 322s Setting Popvarpr to Variable for partition 22 322s Setting Popvarpr to Variable for partition 23 322s Setting Popvarpr to Variable for partition 24 322s Setting Popvarpr to Variable for partition 25 322s Setting Popvarpr to Variable for partition 26 322s Setting Popvarpr to Variable for partition 27 322s Setting Popvarpr to Variable for partition 28 322s Setting Popvarpr to Variable for partition 29 322s Setting Popvarpr to Variable for partition 30 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 1 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 2 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 3 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 4 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 5 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 6 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 7 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 8 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 9 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 10 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 11 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 12 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 13 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 14 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 15 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 16 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 17 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 18 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 19 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 20 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 21 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 22 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 23 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 24 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 25 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 26 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 27 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 28 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 29 322s Setting Popsizepr to Gamma(1.00,100.00) for partition 30 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Exiting mrbayes block 322s Reached end of file 322s 322s Tasks completed, exiting program because mode is noninteractive 322s To return control to the command line after completion of file processing, 322s set mode to interactive with 'mb -i ' (i is for interactive) 322s or use 'set mode=interactive' 322s 322s 322s 322s MrBayes 3.2.7a aarch64 322s 322s (Bayesian Analysis of Phylogeny) 322s 322s Distributed under the GNU General Public License 322s 322s 322s Type "help" or "help " for information 322s on the commands that are available. 322s 322s Type "about" for authorship and general 322s information about the program. 322s 322s 322s 322s Executing file "hymfossil.nex" 322s UNIX line termination 322s Longest line length = 1117 322s Parsing file 322s Expecting NEXUS formatted file 322s Reading data block 322s Allocated taxon set 322s Allocated matrix 322s Defining new matrix with 114 taxa and 5449 characters 322s Data is Mixed 322s Data for partition 1 is Standard 322s Data for partition 2 is Dna 322s There are a total of 2 default data divisions 322s Data matrix is interleaved 322s Gaps coded as - 322s Missing data coded as ? 322s Taxon 1 -> Orthoptera 322s Taxon 2 -> Paraneoptera 322s Taxon 3 -> Chrysopidae 322s Taxon 4 -> Raphidioptera 322s Taxon 5 -> Coleo_Polyphaga 322s Taxon 6 -> Coleo_Adephaga 322s Taxon 7 -> Lepid_Micropterigidae 322s Taxon 8 -> Lepid_Papilionidae 322s Taxon 9 -> Mecoptera 322s Taxon 10 -> Xyela 322s Taxon 11 -> Macroxyela 322s Taxon 12 -> Runaria 322s Taxon 13 -> Paremphytus 322s Taxon 14 -> Blasticotoma 322s Taxon 15 -> Tenthredo 322s Taxon 16 -> Aglaostigma 322s Taxon 17 -> Dolerus 322s Taxon 18 -> Selandria 322s Taxon 19 -> Strongylogaster 322s Taxon 20 -> Monophadnoides 322s Taxon 21 -> Metallus 322s Taxon 22 -> Athalia 322s Taxon 23 -> Taxonus 322s Taxon 24 -> Hoplocampa 322s Taxon 25 -> Nematinus 322s Taxon 26 -> Nematus 322s Taxon 27 -> Cladius 322s Taxon 28 -> Monoctenus 322s Taxon 29 -> Gilpinia 322s Taxon 30 -> Diprion 322s Taxon 31 -> Cimbicinae 322s Taxon 32 -> Abia 322s Taxon 33 -> Corynis 322s Taxon 34 -> Arge 322s Taxon 35 -> Sterictiphora 322s Taxon 36 -> Perga 322s Taxon 37 -> Phylacteophaga 322s Taxon 38 -> Lophyrotoma 322s Taxon 39 -> Acordulecera 322s Taxon 40 -> Decameria 322s Taxon 41 -> Neurotoma 322s Taxon 42 -> Onycholyda 322s Taxon 43 -> Pamphilius 322s Taxon 44 -> Cephalcia 322s Taxon 45 -> Acantholyda 322s Taxon 46 -> Megalodontesc 322s Taxon 47 -> Megalodontessk 322s Taxon 48 -> Cephus 322s Taxon 49 -> Calameuta 322s Taxon 50 -> Hartigia 322s Taxon 51 -> Syntexis 322s Taxon 52 -> Sirex 322s Taxon 53 -> Xeris 322s Taxon 54 -> Urocerus 322s Taxon 55 -> Tremex 322s Taxon 56 -> Xiphydria 322s Taxon 57 -> Orussus 322s Taxon 58 -> StephanidaeA 322s Taxon 59 -> StephanidaeB 322s Taxon 60 -> Megalyra 322s Taxon 61 -> Trigonalidae 322s Taxon 62 -> Chalcidoidea 322s Taxon 63 -> Evanioidea 322s Taxon 64 -> Ichneumonidae 322s Taxon 65 -> Cynipoidea 322s Taxon 66 -> ApoideaA 322s Taxon 67 -> ApoideaB 322s Taxon 68 -> ApoideaC 322s Taxon 69 -> Vespidae 322s Taxon 70 -> Triassoxyela 322s Taxon 71 -> Asioxyela 322s Taxon 72 -> Nigrimonticola 322s Taxon 73 -> Gigantoxyelinae 322s Taxon 74 -> Spathoxyela 322s Taxon 75 -> Xyela_mesozoica 322s Taxon 76 -> Angaridyela 322s Taxon 77 -> Xyelotoma 322s Taxon 78 -> Undatoma 322s Taxon 79 -> Dahuratoma 322s Taxon 80 -> Mesolyda 322s Taxon 81 -> Turgidontes 322s Taxon 82 -> Aulidontes 322s Taxon 83 -> Protosirex 322s Taxon 84 -> Aulisca 322s Taxon 85 -> Anaxyela 322s Taxon 86 -> Syntexyela 322s Taxon 87 -> Karatavites 322s Taxon 88 -> Stephanogaster 322s Taxon 89 -> Leptephialtites 322s Taxon 90 -> Cleistogaster 322s Taxon 91 -> Sepulca 322s Taxon 92 -> Onochoius 322s Taxon 93 -> Ghilarella 322s Taxon 94 -> Paroryssus 322s Taxon 95 -> Praeoryssus 322s Taxon 96 -> Mesorussus 322s Taxon 97 -> Trematothorax 322s Taxon 98 -> Thoracotrema 322s Taxon 99 -> Prosyntexis 322s Taxon 100 -> Kulbastavia 322s Taxon 101 -> Brachysyntexis 322s Taxon 102 -> Symphytopterus 322s Taxon 103 -> Eoxyela 322s Taxon 104 -> Liadoxyela 322s Taxon 105 -> Abrotoxyela 322s Taxon 106 -> Pseudoxyelocerus 322s Taxon 107 -> Palaeathalia 322s Taxon 108 -> Ferganolyda 322s Taxon 109 -> PamphiliidaeUndesc 322s Taxon 110 -> Rudisiricius 322s Taxon 111 -> Sogutia 322s Taxon 112 -> Xyelula 322s Taxon 113 -> Brigittepterus 322s Taxon 114 -> Grimmaratavites 322s Successfully read matrix 322s Matrix contains polymorphisms, interpreted as ambiguity 322s Setting default partition, dividing characters into 2 parts 322s Setting model defaults 322s Seed (for generating default start values) = 1710888436 322s WARNING: There are 2 characters incompatible with the specified 322s coding bias. These characters will be excluded. 322s Setting output file names to "hymfossil.nex.run." 322s Exiting data block 322s Reading mrbayes block 322s Defining charset called 'MV' 322s Defining charset called 'MS' 322s Defining charset called '12S' 322s Defining charset called '16S' 322s Defining charset called '18S' 322s Defining charset called '28S' 322s Defining charset called 'CO1' 322s Defining charset called 'CO1_12' 322s Defining charset called 'CO1_3' 322s Defining charset called 'Ef1aF2' 322s Defining charset called 'Ef1aF2_12' 322s Defining charset called 'Ef1aF2_3' 322s Defining charset called 'Ef1aF1' 322s Defining charset called 'Ef1aF1_12' 322s Defining charset called 'Ef1aF1_3' 322s Defining charset called 'Ef1a' 322s Defining charset called 'morph_ordered' 322s Defining charset called 'morph_excluded' 322s Defining charset called 'morph_constant' 322s Setting characters to ordered 322s Ctype was applied to 44 standard characters 322s Excluding character(s) 322s WARNING: There are 2 characters incompatible with the specified 322s coding bias. These characters will be excluded. 322s Excluding character(s) 322s Setting outgroup to taxon "Orthoptera" 322s Defining taxset called 'fossils' 322s Defining taxset called 'nomorphodata' 322s Defining taxset called 'nomolecudata' 322s Defining constraint called 'root' 322s Defining constraint called 'Hymenoptera' 322s Defining constraint called 'Holometabola' 322s Defining constraint called 'HolometabolaWithFossils' 322s Defining constraint called 'Pamphilioidea' 322s Defining constraint called 'Siricoidea' 322s Defining constraint called 'Apocrita' 322s Defining constraint called 'Xyelidae' 322s Defining constraint called 'Tenthredinidae' 322s Defining constraint called 'Vespina' 322s Defining partition called 'without_CO1_3' 322s Excluding character(s) 322s Setting without_CO1_3 as the partition, dividing characters into 7 parts. 322s Setting model defaults 322s Seed (for generating default start values) = 768559861 322s Enabling Coding Variable for partition 1 322s Setting Rates to Gamma for partition 1 322s Successfully set likelihood model parameters to 322s partition 1 (if applicable) 322s Setting Nucmodel to 4by4 for partition 2 322s Setting Nucmodel to 4by4 for partition 3 322s Setting Nucmodel to 4by4 for partition 5 322s Setting Nucmodel to 4by4 for partition 6 322s Setting Nucmodel to 4by4 for partition 7 322s Set state frequency prior to default 322s Setting Nst to 6 for partition 2 322s Setting Nst to 6 for partition 3 322s Setting Nst to 6 for partition 5 322s Setting Nst to 6 for partition 6 322s Setting Nst to 6 for partition 7 322s Setting Rates to Gamma for partition 2 322s Setting Rates to Gamma for partition 3 322s Setting Rates to Gamma for partition 5 322s Setting Rates to Gamma for partition 6 322s Setting Rates to Gamma for partition 7 322s Setting Covarion to No for partition 2 322s Setting Covarion to No for partition 3 322s Setting Covarion to No for partition 5 322s Setting Covarion to No for partition 6 322s Setting Covarion to No for partition 7 322s Successfully set likelihood model parameters to 322s partitions 2, 3, 5, 6, and 7 (if applicable) 322s Setting Nucmodel to 4by4 for partition 4 322s Set state frequency prior to default 322s Setting Nst to 6 for partition 4 322s Setting Rates to Gamma for partition 4 322s Setting Covarion to No for partition 4 322s Successfully set likelihood model parameters to 322s partition 4 (if applicable) 322s Setting Statefreqpr to Fixed(Equal) for partition 4 322s Successfully set prior model parameters to 322s partition 4 (if applicable) 322s Unlinking 322s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 1 322s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 2 322s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 3 322s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 4 322s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 5 322s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 6 322s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 7 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting age of taxon 'Triassoxyela' to Uniform(228.00,242.00) 322s Setting age of taxon 'Asioxyela' to Uniform(228.00,242.00) 322s Setting age of taxon 'Nigrimonticola' to Uniform(152.00,163.00) 322s Setting age of taxon 'Gigantoxyelinae' to Uniform(125.00,145.00) 322s Setting age of taxon 'Spathoxyela' to Uniform(125.00,145.00) 322s Setting age of taxon 'Xyela_mesozoica' to Uniform(125.00,145.00) 322s Setting age of taxon 'Angaridyela' to Uniform(125.00,145.00) 322s Setting age of taxon 'Xyelotoma' to Uniform(152.00,163.00) 322s Setting age of taxon 'Undatoma' to Uniform(145.00,152.00) 322s Setting age of taxon 'Dahuratoma' to Uniform(133.00,135.00) 322s Setting age of taxon 'Mesolyda' to Uniform(152.00,163.00) 322s Setting age of taxon 'Turgidontes' to Uniform(133.00,135.00) 322s Setting age of taxon 'Aulidontes' to Uniform(152.00,163.00) 322s Setting age of taxon 'Protosirex' to Uniform(152.00,163.00) 322s Setting age of taxon 'Aulisca' to Uniform(152.00,163.00) 322s Setting age of taxon 'Anaxyela' to Uniform(152.00,163.00) 322s Setting age of taxon 'Syntexyela' to Uniform(152.00,163.00) 322s Setting age of taxon 'Karatavites' to Uniform(152.00,163.00) 322s Setting age of taxon 'Stephanogaster' to Uniform(152.00,163.00) 322s Setting age of taxon 'Leptephialtites' to Uniform(152.00,163.00) 322s Setting age of taxon 'Cleistogaster' to Uniform(168.00,191.00) 322s Setting age of taxon 'Sepulca' to Uniform(152.00,163.00) 322s Setting age of taxon 'Onochoius' to Uniform(125.00,145.00) 322s Setting age of taxon 'Ghilarella' to Uniform(113.00,125.00) 322s Setting age of taxon 'Paroryssus' to Uniform(152.00,163.00) 322s Setting age of taxon 'Praeoryssus' to Uniform(152.00,163.00) 322s Setting age of taxon 'Mesorussus' to Uniform(94.00,100.00) 322s Setting age of taxon 'Trematothorax' to Uniform(125.00,145.00) 322s Setting age of taxon 'Thoracotrema' to Uniform(113.00,125.00) 322s Setting age of taxon 'Prosyntexis' to Uniform(80.00,86.00) 322s Setting age of taxon 'Kulbastavia' to Uniform(152.00,163.00) 322s Setting age of taxon 'Brachysyntexis' to Uniform(152.00,163.00) 322s Setting age of taxon 'Symphytopterus' to Uniform(152.00,163.00) 322s Setting age of taxon 'Eoxyela' to Uniform(168.00,191.00) 322s Setting age of taxon 'Liadoxyela' to Uniform(168.00,191.00) 322s Setting age of taxon 'Abrotoxyela' to Uniform(161.00,168.00) 322s Setting age of taxon 'Pseudoxyelocerus' to Uniform(182.00,183.00) 322s Setting age of taxon 'Palaeathalia' to Uniform(125.00,145.00) 322s Setting age of taxon 'Ferganolyda' to Uniform(168.00,191.00) 322s Setting age of taxon 'PamphiliidaeUndesc' to Uniform(161.00,168.00) 322s Setting age of taxon 'Rudisiricius' to Uniform(161.00,168.00) 322s Setting age of taxon 'Sogutia' to Uniform(174.00,201.00) 322s Setting age of taxon 'Xyelula' to Uniform(182.00,183.00) 322s Setting age of taxon 'Brigittepterus' to Uniform(182.00,183.00) 322s Setting age of taxon 'Grimmaratavites' to Uniform(182.00,183.00) 322s Excluding taxa 322s Setting Brlenspr to Clock:Fossilization for partition 1 322s Setting Brlenspr to Clock:Fossilization for partition 2 322s Setting Brlenspr to Clock:Fossilization for partition 3 322s Setting Brlenspr to Clock:Fossilization for partition 4 322s Setting Brlenspr to Clock:Fossilization for partition 5 322s Setting Brlenspr to Clock:Fossilization for partition 6 322s Setting Brlenspr to Clock:Fossilization for partition 7 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting Speciationpr to Exponential(20.00) for partition 1 322s Setting Speciationpr to Exponential(20.00) for partition 2 322s Setting Speciationpr to Exponential(20.00) for partition 3 322s Setting Speciationpr to Exponential(20.00) for partition 4 322s Setting Speciationpr to Exponential(20.00) for partition 5 322s Setting Speciationpr to Exponential(20.00) for partition 6 322s Setting Speciationpr to Exponential(20.00) for partition 7 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting Extinctionpr to Beta(1.00,1.00) for partition 1 322s Setting Extinctionpr to Beta(1.00,1.00) for partition 2 322s Setting Extinctionpr to Beta(1.00,1.00) for partition 3 322s Setting Extinctionpr to Beta(1.00,1.00) for partition 4 322s Setting Extinctionpr to Beta(1.00,1.00) for partition 5 322s Setting Extinctionpr to Beta(1.00,1.00) for partition 6 322s Setting Extinctionpr to Beta(1.00,1.00) for partition 7 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting Fossilizationpr to Beta(1.00,1.00) for partition 1 322s Setting Fossilizationpr to Beta(1.00,1.00) for partition 2 322s Setting Fossilizationpr to Beta(1.00,1.00) for partition 3 322s Setting Fossilizationpr to Beta(1.00,1.00) for partition 4 322s Setting Fossilizationpr to Beta(1.00,1.00) for partition 5 322s Setting Fossilizationpr to Beta(1.00,1.00) for partition 6 322s Setting Fossilizationpr to Beta(1.00,1.00) for partition 7 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting Sampleprob to 0.00050000 for partition 1 322s Setting Sampleprob to 0.00050000 for partition 2 322s Setting Sampleprob to 0.00050000 for partition 3 322s Setting Sampleprob to 0.00050000 for partition 4 322s Setting Sampleprob to 0.00050000 for partition 5 322s Setting Sampleprob to 0.00050000 for partition 6 322s Setting Sampleprob to 0.00050000 for partition 7 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting SampleStrat to Diversity for partition 1 322s Setting SampleStrat to Diversity for partition 2 322s Setting SampleStrat to Diversity for partition 3 322s Setting SampleStrat to Diversity for partition 4 322s Setting SampleStrat to Diversity for partition 5 322s Setting SampleStrat to Diversity for partition 6 322s Setting SampleStrat to Diversity for partition 7 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting Topologypr to Constraints for partition 1 322s Setting Topologypr to Constraints for partition 2 322s Setting Topologypr to Constraints for partition 3 322s Setting Topologypr to Constraints for partition 4 322s Setting Topologypr to Constraints for partition 5 322s Setting Topologypr to Constraints for partition 6 322s Setting Topologypr to Constraints for partition 7 322s Successfully set prior model parameters to all 322s applicable data partitions 322s Setting age of constraint node 'root' to Offsetexponential(315.00,396.00) 322s Setting age of constraint node 'HolometabolaWithFossils' to Offsetexponential(302.00,396.00) 322s Setting Nodeagepr to Calibrated for partition 1 322s Setting Nodeagepr to Calibrated for partition 2 322s Setting Nodeagepr to Calibrated for partition 3 322s Setting Nodeagepr to Calibrated for partition 4 322s Setting Nodeagepr to Calibrated for partition 5 322s Setting Nodeagepr to Calibrated for partition 6 322s Setting Nodeagepr to Calibrated for partition 7 322s Successfully set prior model parameters to all 323s applicable data partitions 323s Setting Clockvarpr to Igr for partition 1 323s Setting Clockvarpr to Igr for partition 2 323s Setting Clockvarpr to Igr for partition 3 323s Setting Clockvarpr to Igr for partition 4 323s Setting Clockvarpr to Igr for partition 5 323s Setting Clockvarpr to Igr for partition 6 323s Setting Clockvarpr to Igr for partition 7 323s Successfully set prior model parameters to all 323s applicable data partitions 323s Setting Igrvarpr to Exponential(37.00) for partition 1 323s Setting Igrvarpr to Exponential(37.00) for partition 2 323s Setting Igrvarpr to Exponential(37.00) for partition 3 323s Setting Igrvarpr to Exponential(37.00) for partition 4 323s Setting Igrvarpr to Exponential(37.00) for partition 5 323s Setting Igrvarpr to Exponential(37.00) for partition 6 323s Setting Igrvarpr to Exponential(37.00) for partition 7 323s Successfully set prior model parameters to all 323s applicable data partitions 323s Setting Clockratepr to Lognormal(-7.10,0.50) 323s Setting Clockratepr to Lognormal(-7.10,0.50) 323s Setting Clockratepr to Lognormal(-7.10,0.50) 323s Setting Clockratepr to Lognormal(-7.10,0.50) 323s Setting Clockratepr to Lognormal(-7.10,0.50) 323s Setting Clockratepr to Lognormal(-7.10,0.50) 323s Setting Clockratepr to Lognormal(-7.10,0.50) 323s Successfully set prior model parameters to all 323s applicable data partitions 323s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 323s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 323s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 323s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 323s Setting number of runs to 4 323s Setting heating parameter to 0.070000 323s Setting number of generations to 100000000 323s Setting sample frequency to 1000 323s Setting print frequency to 10000 323s Setting diagnosing frequency to 50000 323s Setting chain output file names to "hymfossil.nex.run.

" 323s Successfully set chain parameters 323s Exiting mrbayes block 323s Reached end of file 323s 323s Tasks completed, exiting program because mode is noninteractive 323s To return control to the command line after completion of file processing, 323s set mode to interactive with 'mb -i ' (i is for interactive) 323s or use 'set mode=interactive' 323s 323s autopkgtest [22:47:17]: test run-unit-test: -----------------------] 323s autopkgtest [22:47:17]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 323s run-unit-test PASS 324s autopkgtest [22:47:18]: @@@@@@@@@@@@@@@@@@@@ summary 324s run-unit-test PASS 343s Creating nova instance adt-noble-arm64-mrbayes-20240319-224153-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240319.img (UUID bd25b89b-8264-4402-95d9-d9c88f21f275)...