0s autopkgtest [15:38:22]: starting date and time: 2024-03-23 15:38:22+0000
  0s autopkgtest [15:38:22]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [15:38:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dr2k_oww/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade mdtraj --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-5.secgroup --name adt-noble-arm64-mdtraj-20240323-153821-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
777s Creating nova instance adt-noble-arm64-mdtraj-20240323-153821-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240321.img (UUID 28ecccfc-4cb0-4cc6-a280-209e2d140e10)...
777s nova boot failed (attempt #1):
777s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
777s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
777s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
777s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
777s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
777s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps6.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10"
777s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps6.canonical.com:5000
777s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Sat, 23 Mar 2024 15:40:30 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-d45b7676-98bf-47b8-8543-d28ee30cf0cb
777s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps6.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}}
777s DEBUG (session:946) GET call to https://keystone.ps6.canonical.com:5000/v3 used request id req-d45b7676-98bf-47b8-8543-d28ee30cf0cb
777s DEBUG (base:182) Making authentication request to https://keystone.ps6.canonical.com:5000/v3/auth/tokens
777s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 12445
777s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "369f50a481564a2c9433776a4ebd224d", "name": "prod-proposed-migration-arm64", "password_expires_at": null}, "audit_ids": ["tyKHEd66Q4-9CllORYfq6g"], "expires_at": "2024-03-24T15:40:30.000000Z", "issued_at": "2024-03-23T15:40:30.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "bd8b3df3f03d43a0a9303b7c0434fdab", "name": "prod-proposed-migration-arm64_project"}, "is_domain": false, "roles": [{"id": "15cf997650e345b7b21c02b5cdb7d84a", "name": "member"}, {"id": "86bf3043974746c2bf52c2a9f362f986", "name": "reader"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "213cdf38198c4581bd5b7d6d0836923b", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "67061eee26944a1a8009f9d07be19738", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "fc88c52c749a47d08a24a2c7efbde01b", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/", "region": "prodstack6"}], "id": "06e4714942634054bf9aa11715312b4e", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "8aa44c94b63746bd9b37f1008ad55fa8", "interface": "admin", "region_id": "prodstack6", "url": "https://aodh-admin.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "92cf08a80a0242ebbca8ec893cf332b1", "interface": "public", "region_id": "prodstack6", "url": "https://aodh.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "d8139c6e11ae4edcb78981c12bd53212", "interface": "internal", "region_id": "prodstack6", "url": "https://aodh-internal.ps6.canonical.com:8042", "region": "prodstack6"}], "id": "2fb939b0b969435c8f0c5fa4edb4de94", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "a49fcc80e658411885f88cdd8432a571", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "b23866fddba8415885b06c064c34b94b", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "f84ae55197f94b8392a678f35c82ca26", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8000/v1", "region": "prodstack6"}], "id": "3d4b59f7dab644b2b527e8e96b697545", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "2e0143334c6241169f45f1c11970c6bc", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "5e19c32243c04a3faf1e5f9ab900c260", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "b3fc5c88ec8543a691fec75726b86967", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "43b926205044476b8093b18d8ce0a9e4", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "a47569b96e5b4146a312e4673504557c", "interface": "public", "region_id": "prodstack6", "url": "https://glance.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "bba35c4ab04f4114a2a34e65568537bd", "interface": "internal", "region_id": "prodstack6", "url": "https://glance-internal.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "ef769f1117c74a62a279131486c89628", "interface": "admin", "region_id": "prodstack6", "url": "https://glance-admin.ps6.canonical.com:9292", "region": "prodstack6"}], "id": "49de724549524bd78e9cd46a4477226f", "type": "image", "name": "glance"}, {"endpoints": [{"id": "a1a41e9a1e2d42e5b6cd5380cd1e21bf", "interface": "admin", "region_id": "prodstack6", "url": "https://cinder-admin.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "d2309a99724b4111827482c68a832c0c", "interface": "public", "region_id": "prodstack6", "url": "https://cinder.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "f8a02e3949ff42afa772eb5e74dbef9f", "interface": "internal", "region_id": "prodstack6", "url": "https://cinder-internal.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "5bf6578a631349e3af4bf36d7adb18e1", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "01d84128f36444e9b01549b86bd69116", "interface": "admin", "region_id": "prodstack6", "url": "https://barbican-admin.ps6.canonical.com:9312", "region": "prodstack6"}, {"id": "0ce4a8777e0b40a88f7fc0f77e34a605", "interface": "public", "region_id": "prodstack6", "url": "https://barbican.ps6.canonical.com:9311", "region": "prodstack6"}, {"id": "f507ba49e4a7435cb330234217c92449", "interface": "internal", "region_id": "prodstack6", "url": "https://barbican-internal.ps6.canonical.com:9311", "region": "prodstack6"}], "id": "62cb1c3d9f6c45979c13516a6b3ff114", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3cb6121bd8f14da8aa2fba7be823a2b4", "interface": "internal", "region_id": "prodstack6", "url": "https://neutron-internal.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "46ba11d133fe4e8f9e8f9097ba737682", "interface": "admin", "region_id": "prodstack6", "url": "https://neutron-admin.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "d872eb6aa23d40009165aa3dcdce3948", "interface": "public", "region_id": "prodstack6", "url": "https://neutron.ps6.canonical.com:9696", "region": "prodstack6"}], "id": "759cb6fdfbc146dd8b9d1ba444c4b9db", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "4349d565f72446da9699269f85df5e8b", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "a483dcc58f5e415e9ec739c94474e609", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "c1f14236723e42878562d8dd63d5a6a0", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "93fc4008035946deb1f433c2dd905a5d", "type": "sharev2", "name": "manilav2"}, {"endpoints": [{"id": "0fa148793c7249c8b187b6b4ff425731", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "555ade266a6b4bcc81b6e5abf607aec5", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "7dad1a7b1552465686424fc014463173", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift/simplestreams/data", "region": "prodstack6"}], "id": "977dd359af1a4fcc91a9daf4dc33b0f3", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "12d30eabcdec4831bd15273d55b1cbab", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "29d35b2b483346479f1ff1a13604d50e", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "4aa1422b8f5945d8aed9ba6a8d670e5c", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "ac5e4f28fa794cde99f1d7ffc1b664e5", "type": "share", "name": "manila"}, {"endpoints": [{"id": "c7db93d54a684d8caeae1d9e18a59118", "interface": "admin", "region_id": "prodstack6", "url": "https://nova-admin.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "dd7a796f401b477f9f1b5bbc05747d8d", "interface": "public", "region_id": "prodstack6", "url": "https://nova.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "e7ecb038d830462ea67b0b463af5e013", "interface": "internal", "region_id": "prodstack6", "url": "https://nova-internal.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}], "id": "b4519af08e174d4a8333a2d14ac3ba3b", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "02ef5b6154934ffd97d8b5b8e4d70d2a", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "2741abe526e94842a4fa801423ba1ef0", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "3742f9406c604516933d6fd8c29e0880", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift", "region": "prodstack6"}], "id": "c7f07a7b3b3c408c96200dfd1d1a0f6f", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "06d4ed6c160a43f2b7fa7f80ad1dc709", "interface": "internal", "region_id": "prodstack6", "url": "https://designate-internal.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "1e240624a50c4ca0aaa6ef63cbc94f1b", "interface": "admin", "region_id": "prodstack6", "url": "https://designate-admin.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "f94d7d17997a43fd9c63b34c43301c6e", "interface": "public", "region_id": "prodstack6", "url": "https://designate.ps6.canonical.com:9001", "region": "prodstack6"}], "id": "cf82013d63844fedbe96bcacb6bd1fef", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "4a688340be464710bfa60bf3f88f41c4", "interface": "admin", "region_id": "prodstack6", "url": "https://gnocchi-admin.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "a5a95506c96d4716adb4efc3ac9051be", "interface": "public", "region_id": "prodstack6", "url": "https://gnocchi.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "eebc17a086834f8fa8bb6b35c8061a8c", "interface": "internal", "region_id": "prodstack6", "url": "https://gnocchi-internal.ps6.canonical.com:8041", "region": "prodstack6"}], "id": "d10589e854a446a5b852593f33f170a7", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "08f66df28d0f47f3bec12f29e06d85ac", "interface": "admin", "region_id": "prodstack6", "url": "https://keystone-admin.ps6.canonical.com:35357/v3", "region": "prodstack6"}, {"id": "46d270b45ceb42db902f4d241afa6a70", "interface": "public", "region_id": "prodstack6", "url": "https://keystone.ps6.canonical.com:5000/v3", "region": "prodstack6"}, {"id": "a4addee11d9349cfa46ec6660dbad947", "interface": "internal", "region_id": "prodstack6", "url": "https://keystone-internal.ps6.canonical.com:5000/v3", "region": "prodstack6"}], "id": "deb38a775a9b4e87a8de9e3eed779882", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "18b4af5f40664babb94e884c6a53ccf3", "interface": "admin", "region_id": "prodstack6", "url": "https://octavia-admin.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "2b6f7ba7f9944ee1aebd6dccc5223b2d", "interface": "internal", "region_id": "prodstack6", "url": "https://octavia-internal.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "5e3012e9c79e4890be4d964b6208f5c6", "interface": "public", "region_id": "prodstack6", "url": "https://octavia.ps6.canonical.com:9876", "region": "prodstack6"}], "id": "e00337be20d54948b66a1c3109b885c6", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "2d2942b35f3041389ad810f679d02f22", "interface": "public", "region_id": "prodstack6", "url": "https://placement.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "2e3beaac7ac14284b72e2592820ad725", "interface": "admin", "region_id": "prodstack6", "url": "https://placement-admin.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "91060f6df9ae444f81808adf40540d94", "interface": "internal", "region_id": "prodstack6", "url": "https://placement-internal.ps6.canonical.com:8778", "region": "prodstack6"}], "id": "edc6e37f154f4c0ab3dd4d52b82bf873", "type": "placement", "name": "placement"}]}}
777s REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}725816439d4d57a7d1e691a7e45832b822609a18ecb91e29666873b371673e3e"
777s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}725816439d4d57a7d1e691a7e45832b822609a18ecb91e29666873b371673e3e"
777s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps6.canonical.com:8774
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0
777s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Sat, 23 Mar 2024 15:40:30 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-3ae191e5-d82e-41b8-9882-869159cd9eea x-openstack-request-id: req-3ae191e5-d82e-41b8-9882-869159cd9eea
777s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Sat, 23 Mar 2024 15:40:30 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-3ae191e5-d82e-41b8-9882-869159cd9eea x-openstack-request-id: req-3ae191e5-d82e-41b8-9882-869159cd9eea
777s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
777s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397
777s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Sat, 23 Mar 2024 15:40:30 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-a8644395-2c97-4b61-98ee-31d783a7d5f8 x-openstack-request-id: req-a8644395-2c97-4b61-98ee-31d783a7d5f8
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Sat, 23 Mar 2024 15:40:30 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-a8644395-2c97-4b61-98ee-31d783a7d5f8 x-openstack-request-id: req-a8644395-2c97-4b61-98ee-31d783a7d5f8
777s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
777s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
777s GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-a8644395-2c97-4b61-98ee-31d783a7d5f8
777s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-a8644395-2c97-4b61-98ee-31d783a7d5f8
777s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
777s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
777s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
777s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
777s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
777s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}725816439d4d57a7d1e691a7e45832b822609a18ecb91e29666873b371673e3e" -H "X-OpenStack-Nova-API-Version: 2.87"
777s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps6.canonical.com:9292
777s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10 HTTP/1.1" 200 1935
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 1935 Content-Type: application/json Date: Sat, 23 Mar 2024 15:40:31 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-69c49710-e67c-43db-a55e-1e6971ab82e8
777s DEBUG (session:580) RESP BODY: {"base_image_ref": "09c3944a-cd0d-425d-b22f-cde7ec51d155", "boot_roles": "reader,member", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "virt", "hw_video_model": "virtio", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "543499e0-aeb9-4922-8880-c51a4fc18bf8", "owner_id": "bd8b3df3f03d43a0a9303b7c0434fdab", "owner_project_name": "prod-proposed-migration-arm64_project", "owner_specified.openstack.md5": "087a26f2222dab8516c553374a9d1b4d", "owner_specified.openstack.object": "images/adt/ubuntu-noble-arm64-server-20240201.img", "owner_specified.openstack.sha256": "095b278df09de76f01843de514daf3f8eb0a0cc67fee4b3491161913153619db", "owner_user_name": "prod-proposed-migration-arm64", "user_id": "369f50a481564a2c9433776a4ebd224d", "name": "adt/ubuntu-noble-arm64-server-20240321.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2306342912, "virtual_size": 21474836480, "status": "active", "checksum": "8198422d2c7534f56b5a2a46874755ab", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "bd8b3df3f03d43a0a9303b7c0434fdab", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "c59ccc5319301a5ec5077e547fd66aac380403815cc5c00e980d9dce3efa9cc417db45604d4bf4c4e1913c2a5af61917b84fdf003c36adeb77990adb487af4ed", "id": "28ecccfc-4cb0-4cc6-a280-209e2d140e10", "created_at": "2024-03-21T11:24:35Z", "updated_at": "2024-03-21T11:25:04Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/28ecccfc-4cb0-4cc6-a280-209e2d140e10/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/28ecccfc-4cb0-4cc6-a280-209e2d140e10/snap", "tags": [], "self": "/v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10", "file": "/v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10/file", "schema": "/v2/schemas/image", "stores": "ceph"}
777s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10 used request id req-69c49710-e67c-43db-a55e-1e6971ab82e8
777s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}725816439d4d57a7d1e691a7e45832b822609a18ecb91e29666873b371673e3e" -H "X-OpenStack-Nova-API-Version: 2.87"
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/autopkgtest HTTP/1.1" 404 84
777s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 84 Content-Type: application/json; charset=UTF-8 Date: Sat, 23 Mar 2024 15:40:31 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-c8971f84-acff-4925-9b2a-b33bdf5c87d3 x-openstack-request-id: req-c8971f84-acff-4925-9b2a-b33bdf5c87d3
777s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest could not be found."}}
777s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest used request id req-c8971f84-acff-4925-9b2a-b33bdf5c87d3
777s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}725816439d4d57a7d1e691a7e45832b822609a18ecb91e29666873b371673e3e" -H "X-OpenStack-Nova-API-Version: 2.87"
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 1739
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 1739 Content-Type: application/json Date: Sat, 23 Mar 2024 15:40:31 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-20458790-89a1-4695-9abc-d1db2391de12 x-openstack-request-id: req-20458790-89a1-4695-9abc-d1db2391de12
777s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "062428d9-35a1-461f-a33a-38436ed516b4", "name": "autopkgtest-cpu8-ram16-disk160-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/062428d9-35a1-461f-a33a-38436ed516b4"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/062428d9-35a1-461f-a33a-38436ed516b4"}], "description": null}, {"id": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "name": "autopkgtest", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}], "description": null}, {"id": "8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4", "name": "autopkgtest-cpu2-ram4-disk20-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4"}], "description": null}, {"id": "a8256f9e-53ee-4584-ad7f-60e088825b83", "name": "autopkgtest-big", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/a8256f9e-53ee-4584-ad7f-60e088825b83"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/a8256f9e-53ee-4584-ad7f-60e088825b83"}], "description": null}, {"id": "cfc564ac-9f6e-4477-91c4-a89ccb4b744e", "name": "autopkgtest-cpu4-ram8-disk100-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/cfc564ac-9f6e-4477-91c4-a89ccb4b744e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/cfc564ac-9f6e-4477-91c4-a89ccb4b744e"}], "description": null}]}
777s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None used request id req-20458790-89a1-4695-9abc-d1db2391de12
777s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}725816439d4d57a7d1e691a7e45832b822609a18ecb91e29666873b371673e3e" -H "X-OpenStack-Nova-API-Version: 2.87"
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 HTTP/1.1" 200 613
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 613 Content-Type: application/json Date: Sat, 23 Mar 2024 15:40:31 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-e718f2ce-66a4-4657-841f-74354048ccc6 x-openstack-request-id: req-e718f2ce-66a4-4657-841f-74354048ccc6
777s DEBUG (session:580) RESP BODY: {"flavor": {"id": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "name": "autopkgtest", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-arm64", "hw_rng:allowed": "True"}}}
777s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 used request id req-e718f2ce-66a4-4657-841f-74354048ccc6
777s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps6.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}725816439d4d57a7d1e691a7e45832b822609a18ecb91e29666873b371673e3e" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-noble-arm64-mdtraj-20240323-153821-juju-7f2275-prod-proposed-migration-environment-2", "imageRef": "28ecccfc-4cb0-4cc6-a280-209e2d140e10", "flavorRef": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "user_data": "I2Nsb3VkLWNvbmZpZwpob3N0bmFtZTogYXV0b3BrZ3Rlc3QKbWFuYWdlX2V0Y19ob3N0czogdHJ1ZQphcHRfdXBkYXRlOiB0cnVlCmFwdF91cGdyYWRlOiBmYWxzZQphcHRfbWlycm9yOiBodHRwOi8vZnRwbWFzdGVyLmludGVybmFsL3VidW50dS8KCnJ1bmNtZDoKIC0gZWNobyAnQWNxdWlyZTo6TGFuZ3VhZ2VzICJub25lIjsnID4gL2V0Yy9hcHQvYXB0LmNvbmYuZC85MG5vbGFuZ3VhZ2VzCiAtIGVjaG8gJ2ZvcmNlLXVuc2FmZS1pbycgPiAvZXRjL2Rwa2cvZHBrZy5jZmcuZC9hdXRvcGtndGVzdAogLSBwcmludGYgJ1xuVEVSTT1saW51eFxuJ2h0dHBfcHJveHk9aHR0cDovL3NxdWlkLmludGVybmFsOjMxMjgnXG4naHR0cHNfcHJveHk9aHR0cDovL3NxdWlkLmludGVybmFsOjMxMjgnXG4nbm9fcHJveHk9MTI3LjAuMC4xLDEyNy4wLjEuMSxsb2dpbi51YnVudHUuY29tLGxvY2FsaG9zdCxsb2NhbGRvbWFpbixub3ZhbG9jYWwsaW50ZXJuYWwsYXJjaGl2ZS51YnVudHUuY29tLHBvcnRzLnVidW50dS5jb20sc2VjdXJpdHkudWJ1bnR1LmNvbSxkZGVicy51YnVudHUuY29tLGNoYW5nZWxvZ3MudWJ1bnR1LmNvbSxsYXVuY2hwYWRsaWJyYXJpYW4ubmV0LGxhdW5jaHBhZGNvbnRlbnQubmV0LGxhdW5jaHBhZC5uZXQsMTAuMjQuMC4wLzI0LGtleXN0b25lLnBzNS5jYW5vbmljYWwuY29tLG9iamVjdHN0b3JhZ2UucHJvZHN0YWNrNS5jYW5vbmljYWwuY29tJ1xuJyA+PiAvZXRjL2Vudmlyb25tZW50CiAtIHNlZCAtaSAtciAnL14xMjcuMC4xLjEvIHMvYXV0b3BrZ3Rlc3QtW14gXStcLi9hdXRvcGtndGVzdFwuLycgL2V0Yy9ob3N0cwo=", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-2", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-5.secgroup"}], "networks": [{"uuid": "6ea4839c-9760-4b54-ab7d-70a6312667d1"}]}}'
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 403 115
777s DEBUG (session:548) RESP: [403] Connection: Keep-Alive Content-Length: 115 Content-Type: application/json; charset=UTF-8 Date: Sat, 23 Mar 2024 15:40:31 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-831662f6-f786-4c8d-a7a7-e9eeee5fcc3d x-openstack-request-id: req-831662f6-f786-4c8d-a7a7-e9eeee5fcc3d
777s DEBUG (session:580) RESP BODY: {"forbidden": {"code": 403, "message": "Quota exceeded for cores: Requested 2, but already used 140 of 140 cores"}}
777s DEBUG (session:936) POST call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers used request id req-831662f6-f786-4c8d-a7a7-e9eeee5fcc3d
777s DEBUG (shell:822) Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-831662f6-f786-4c8d-a7a7-e9eeee5fcc3d)
777s Traceback (most recent call last):
777s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main
777s     OpenStackComputeShell().main(argv)
777s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main
777s     args.func(self.cs, args)
777s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 971, in do_boot
777s     server = cs.servers.create(*boot_args, **boot_kwargs)
777s   File "/usr/lib/python3/dist-packages/novaclient/v2/servers.py", line 1477, in create
777s     return self._boot(response_key, *boot_args, **boot_kwargs)
777s   File "/usr/lib/python3/dist-packages/novaclient/v2/servers.py", line 836, in _boot
777s     return self._create('/servers', body, response_key,
777s   File "/usr/lib/python3/dist-packages/novaclient/base.py", line 363, in _create
777s     resp, body = self.api.client.post(url, body=body)
777s   File "/usr/lib/python3/dist-packages/keystoneauth1/adapter.py", line 392, in post
777s     return self.request(url, 'POST', **kwargs)
777s   File "/usr/lib/python3/dist-packages/novaclient/client.py", line 78, in request
777s     raise exceptions.from_response(resp, body, url, method)
777s novaclient.exceptions.Forbidden: Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-831662f6-f786-4c8d-a7a7-e9eeee5fcc3d)
777s ERROR (Forbidden): Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-831662f6-f786-4c8d-a7a7-e9eeee5fcc3d)
777s nova boot failed (attempt #2):
777s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
777s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
777s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
777s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
777s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
777s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps6.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10"
777s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps6.canonical.com:5000
777s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Sat, 23 Mar 2024 15:45:32 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-5b7e8c70-0c71-4487-8516-d94b4b238aef
777s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps6.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}}
777s DEBUG (session:946) GET call to https://keystone.ps6.canonical.com:5000/v3 used request id req-5b7e8c70-0c71-4487-8516-d94b4b238aef
777s DEBUG (base:182) Making authentication request to https://keystone.ps6.canonical.com:5000/v3/auth/tokens
777s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 12445
777s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "369f50a481564a2c9433776a4ebd224d", "name": "prod-proposed-migration-arm64", "password_expires_at": null}, "audit_ids": ["sRmMqo_GRD2_nBks_AMqFA"], "expires_at": "2024-03-24T15:45:33.000000Z", "issued_at": "2024-03-23T15:45:33.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "bd8b3df3f03d43a0a9303b7c0434fdab", "name": "prod-proposed-migration-arm64_project"}, "is_domain": false, "roles": [{"id": "86bf3043974746c2bf52c2a9f362f986", "name": "reader"}, {"id": "15cf997650e345b7b21c02b5cdb7d84a", "name": "member"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "213cdf38198c4581bd5b7d6d0836923b", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "67061eee26944a1a8009f9d07be19738", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "fc88c52c749a47d08a24a2c7efbde01b", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/", "region": "prodstack6"}], "id": "06e4714942634054bf9aa11715312b4e", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "8aa44c94b63746bd9b37f1008ad55fa8", "interface": "admin", "region_id": "prodstack6", "url": "https://aodh-admin.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "92cf08a80a0242ebbca8ec893cf332b1", "interface": "public", "region_id": "prodstack6", "url": "https://aodh.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "d8139c6e11ae4edcb78981c12bd53212", "interface": "internal", "region_id": "prodstack6", "url": "https://aodh-internal.ps6.canonical.com:8042", "region": "prodstack6"}], "id": "2fb939b0b969435c8f0c5fa4edb4de94", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "a49fcc80e658411885f88cdd8432a571", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "b23866fddba8415885b06c064c34b94b", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "f84ae55197f94b8392a678f35c82ca26", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8000/v1", "region": "prodstack6"}], "id": "3d4b59f7dab644b2b527e8e96b697545", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "2e0143334c6241169f45f1c11970c6bc", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "5e19c32243c04a3faf1e5f9ab900c260", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "b3fc5c88ec8543a691fec75726b86967", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "43b926205044476b8093b18d8ce0a9e4", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "a47569b96e5b4146a312e4673504557c", "interface": "public", "region_id": "prodstack6", "url": "https://glance.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "bba35c4ab04f4114a2a34e65568537bd", "interface": "internal", "region_id": "prodstack6", "url": "https://glance-internal.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "ef769f1117c74a62a279131486c89628", "interface": "admin", "region_id": "prodstack6", "url": "https://glance-admin.ps6.canonical.com:9292", "region": "prodstack6"}], "id": "49de724549524bd78e9cd46a4477226f", "type": "image", "name": "glance"}, {"endpoints": [{"id": "a1a41e9a1e2d42e5b6cd5380cd1e21bf", "interface": "admin", "region_id": "prodstack6", "url": "https://cinder-admin.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "d2309a99724b4111827482c68a832c0c", "interface": "public", "region_id": "prodstack6", "url": "https://cinder.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "f8a02e3949ff42afa772eb5e74dbef9f", "interface": "internal", "region_id": "prodstack6", "url": "https://cinder-internal.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "5bf6578a631349e3af4bf36d7adb18e1", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "01d84128f36444e9b01549b86bd69116", "interface": "admin", "region_id": "prodstack6", "url": "https://barbican-admin.ps6.canonical.com:9312", "region": "prodstack6"}, {"id": "0ce4a8777e0b40a88f7fc0f77e34a605", "interface": "public", "region_id": "prodstack6", "url": "https://barbican.ps6.canonical.com:9311", "region": "prodstack6"}, {"id": "f507ba49e4a7435cb330234217c92449", "interface": "internal", "region_id": "prodstack6", "url": "https://barbican-internal.ps6.canonical.com:9311", "region": "prodstack6"}], "id": "62cb1c3d9f6c45979c13516a6b3ff114", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3cb6121bd8f14da8aa2fba7be823a2b4", "interface": "internal", "region_id": "prodstack6", "url": "https://neutron-internal.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "46ba11d133fe4e8f9e8f9097ba737682", "interface": "admin", "region_id": "prodstack6", "url": "https://neutron-admin.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "d872eb6aa23d40009165aa3dcdce3948", "interface": "public", "region_id": "prodstack6", "url": "https://neutron.ps6.canonical.com:9696", "region": "prodstack6"}], "id": "759cb6fdfbc146dd8b9d1ba444c4b9db", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "4349d565f72446da9699269f85df5e8b", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "a483dcc58f5e415e9ec739c94474e609", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "c1f14236723e42878562d8dd63d5a6a0", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "93fc4008035946deb1f433c2dd905a5d", "type": "sharev2", "name": "manilav2"}, {"endpoints": [{"id": "0fa148793c7249c8b187b6b4ff425731", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "555ade266a6b4bcc81b6e5abf607aec5", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "7dad1a7b1552465686424fc014463173", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift/simplestreams/data", "region": "prodstack6"}], "id": "977dd359af1a4fcc91a9daf4dc33b0f3", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "12d30eabcdec4831bd15273d55b1cbab", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "29d35b2b483346479f1ff1a13604d50e", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "4aa1422b8f5945d8aed9ba6a8d670e5c", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "ac5e4f28fa794cde99f1d7ffc1b664e5", "type": "share", "name": "manila"}, {"endpoints": [{"id": "c7db93d54a684d8caeae1d9e18a59118", "interface": "admin", "region_id": "prodstack6", "url": "https://nova-admin.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "dd7a796f401b477f9f1b5bbc05747d8d", "interface": "public", "region_id": "prodstack6", "url": "https://nova.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "e7ecb038d830462ea67b0b463af5e013", "interface": "internal", "region_id": "prodstack6", "url": "https://nova-internal.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}], "id": "b4519af08e174d4a8333a2d14ac3ba3b", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "02ef5b6154934ffd97d8b5b8e4d70d2a", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "2741abe526e94842a4fa801423ba1ef0", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "3742f9406c604516933d6fd8c29e0880", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift", "region": "prodstack6"}], "id": "c7f07a7b3b3c408c96200dfd1d1a0f6f", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "06d4ed6c160a43f2b7fa7f80ad1dc709", "interface": "internal", "region_id": "prodstack6", "url": "https://designate-internal.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "1e240624a50c4ca0aaa6ef63cbc94f1b", "interface": "admin", "region_id": "prodstack6", "url": "https://designate-admin.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "f94d7d17997a43fd9c63b34c43301c6e", "interface": "public", "region_id": "prodstack6", "url": "https://designate.ps6.canonical.com:9001", "region": "prodstack6"}], "id": "cf82013d63844fedbe96bcacb6bd1fef", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "4a688340be464710bfa60bf3f88f41c4", "interface": "admin", "region_id": "prodstack6", "url": "https://gnocchi-admin.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "a5a95506c96d4716adb4efc3ac9051be", "interface": "public", "region_id": "prodstack6", "url": "https://gnocchi.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "eebc17a086834f8fa8bb6b35c8061a8c", "interface": "internal", "region_id": "prodstack6", "url": "https://gnocchi-internal.ps6.canonical.com:8041", "region": "prodstack6"}], "id": "d10589e854a446a5b852593f33f170a7", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "08f66df28d0f47f3bec12f29e06d85ac", "interface": "admin", "region_id": "prodstack6", "url": "https://keystone-admin.ps6.canonical.com:35357/v3", "region": "prodstack6"}, {"id": "46d270b45ceb42db902f4d241afa6a70", "interface": "public", "region_id": "prodstack6", "url": "https://keystone.ps6.canonical.com:5000/v3", "region": "prodstack6"}, {"id": "a4addee11d9349cfa46ec6660dbad947", "interface": "internal", "region_id": "prodstack6", "url": "https://keystone-internal.ps6.canonical.com:5000/v3", "region": "prodstack6"}], "id": "deb38a775a9b4e87a8de9e3eed779882", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "18b4af5f40664babb94e884c6a53ccf3", "interface": "admin", "region_id": "prodstack6", "url": "https://octavia-admin.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "2b6f7ba7f9944ee1aebd6dccc5223b2d", "interface": "internal", "region_id": "prodstack6", "url": "https://octavia-internal.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "5e3012e9c79e4890be4d964b6208f5c6", "interface": "public", "region_id": "prodstack6", "url": "https://octavia.ps6.canonical.com:9876", "region": "prodstack6"}], "id": "e00337be20d54948b66a1c3109b885c6", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "2d2942b35f3041389ad810f679d02f22", "interface": "public", "region_id": "prodstack6", "url": "https://placement.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "2e3beaac7ac14284b72e2592820ad725", "interface": "admin", "region_id": "prodstack6", "url": "https://placement-admin.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "91060f6df9ae444f81808adf40540d94", "interface": "internal", "region_id": "prodstack6", "url": "https://placement-internal.ps6.canonical.com:8778", "region": "prodstack6"}], "id": "edc6e37f154f4c0ab3dd4d52b82bf873", "type": "placement", "name": "placement"}]}}
777s REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0178d5a131205b01606c36f4e064ef8444ca1d951f1b7d4af60d238c0aa7380e"
777s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0178d5a131205b01606c36f4e064ef8444ca1d951f1b7d4af60d238c0aa7380e"
777s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps6.canonical.com:8774
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0
777s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Sat, 23 Mar 2024 15:45:33 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-ce7abaa4-64bf-4768-90ae-69f4312576da x-openstack-request-id: req-ce7abaa4-64bf-4768-90ae-69f4312576da
777s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Sat, 23 Mar 2024 15:45:33 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-ce7abaa4-64bf-4768-90ae-69f4312576da x-openstack-request-id: req-ce7abaa4-64bf-4768-90ae-69f4312576da
777s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
777s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397
777s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Sat, 23 Mar 2024 15:45:33 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-08d9f6c6-f027-41a0-b66b-83617451275a x-openstack-request-id: req-08d9f6c6-f027-41a0-b66b-83617451275a
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Sat, 23 Mar 2024 15:45:33 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-08d9f6c6-f027-41a0-b66b-83617451275a x-openstack-request-id: req-08d9f6c6-f027-41a0-b66b-83617451275a
777s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
777s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
777s GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-08d9f6c6-f027-41a0-b66b-83617451275a
777s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-08d9f6c6-f027-41a0-b66b-83617451275a
777s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
777s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
777s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
777s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
777s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
777s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
777s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0178d5a131205b01606c36f4e064ef8444ca1d951f1b7d4af60d238c0aa7380e" -H "X-OpenStack-Nova-API-Version: 2.87"
777s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps6.canonical.com:9292
777s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10 HTTP/1.1" 200 1935
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 1935 Content-Type: application/json Date: Sat, 23 Mar 2024 15:45:34 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-68ec7a79-cf54-4fc1-bb5e-918623decd73
777s DEBUG (session:580) RESP BODY: {"base_image_ref": "09c3944a-cd0d-425d-b22f-cde7ec51d155", "boot_roles": "reader,member", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "virt", "hw_video_model": "virtio", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "543499e0-aeb9-4922-8880-c51a4fc18bf8", "owner_id": "bd8b3df3f03d43a0a9303b7c0434fdab", "owner_project_name": "prod-proposed-migration-arm64_project", "owner_specified.openstack.md5": "087a26f2222dab8516c553374a9d1b4d", "owner_specified.openstack.object": "images/adt/ubuntu-noble-arm64-server-20240201.img", "owner_specified.openstack.sha256": "095b278df09de76f01843de514daf3f8eb0a0cc67fee4b3491161913153619db", "owner_user_name": "prod-proposed-migration-arm64", "user_id": "369f50a481564a2c9433776a4ebd224d", "name": "adt/ubuntu-noble-arm64-server-20240321.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2306342912, "virtual_size": 21474836480, "status": "active", "checksum": "8198422d2c7534f56b5a2a46874755ab", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "bd8b3df3f03d43a0a9303b7c0434fdab", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "c59ccc5319301a5ec5077e547fd66aac380403815cc5c00e980d9dce3efa9cc417db45604d4bf4c4e1913c2a5af61917b84fdf003c36adeb77990adb487af4ed", "id": "28ecccfc-4cb0-4cc6-a280-209e2d140e10", "created_at": "2024-03-21T11:24:35Z", "updated_at": "2024-03-21T11:25:04Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/28ecccfc-4cb0-4cc6-a280-209e2d140e10/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/28ecccfc-4cb0-4cc6-a280-209e2d140e10/snap", "tags": [], "self": "/v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10", "file": "/v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10/file", "schema": "/v2/schemas/image", "stores": "ceph"}
777s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/28ecccfc-4cb0-4cc6-a280-209e2d140e10 used request id req-68ec7a79-cf54-4fc1-bb5e-918623decd73
777s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0178d5a131205b01606c36f4e064ef8444ca1d951f1b7d4af60d238c0aa7380e" -H "X-OpenStack-Nova-API-Version: 2.87"
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/autopkgtest HTTP/1.1" 404 84
777s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 84 Content-Type: application/json; charset=UTF-8 Date: Sat, 23 Mar 2024 15:45:34 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-97cc9dc0-84fc-4ec1-8d64-488e1c587071 x-openstack-request-id: req-97cc9dc0-84fc-4ec1-8d64-488e1c587071
777s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest could not be found."}}
777s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest used request id req-97cc9dc0-84fc-4ec1-8d64-488e1c587071
777s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0178d5a131205b01606c36f4e064ef8444ca1d951f1b7d4af60d238c0aa7380e" -H "X-OpenStack-Nova-API-Version: 2.87"
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 1739
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 1739 Content-Type: application/json Date: Sat, 23 Mar 2024 15:45:34 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-3df111f9-0d3e-459b-b4b6-f47e77b398e9 x-openstack-request-id: req-3df111f9-0d3e-459b-b4b6-f47e77b398e9
777s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "062428d9-35a1-461f-a33a-38436ed516b4", "name": "autopkgtest-cpu8-ram16-disk160-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/062428d9-35a1-461f-a33a-38436ed516b4"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/062428d9-35a1-461f-a33a-38436ed516b4"}], "description": null}, {"id": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "name": "autopkgtest", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}], "description": null}, {"id": "8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4", "name": "autopkgtest-cpu2-ram4-disk20-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4"}], "description": null}, {"id": "a8256f9e-53ee-4584-ad7f-60e088825b83", "name": "autopkgtest-big", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/a8256f9e-53ee-4584-ad7f-60e088825b83"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/a8256f9e-53ee-4584-ad7f-60e088825b83"}], "description": null}, {"id": "cfc564ac-9f6e-4477-91c4-a89ccb4b744e", "name": "autopkgtest-cpu4-ram8-disk100-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/cfc564ac-9f6e-4477-91c4-a89ccb4b744e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/cfc564ac-9f6e-4477-91c4-a89ccb4b744e"}], "description": null}]}
777s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None used request id req-3df111f9-0d3e-459b-b4b6-f47e77b398e9
777s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0178d5a131205b01606c36f4e064ef8444ca1d951f1b7d4af60d238c0aa7380e" -H "X-OpenStack-Nova-API-Version: 2.87"
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 HTTP/1.1" 200 613
777s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 613 Content-Type: application/json Date: Sat, 23 Mar 2024 15:45:34 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-0a77b801-8122-44b4-80e8-984ebdf9be0e x-openstack-request-id: req-0a77b801-8122-44b4-80e8-984ebdf9be0e
777s DEBUG (session:580) RESP BODY: {"flavor": {"id": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "name": "autopkgtest", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-arm64", "hw_rng:allowed": "True"}}}
777s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 used request id req-0a77b801-8122-44b4-80e8-984ebdf9be0e
777s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps6.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}0178d5a131205b01606c36f4e064ef8444ca1d951f1b7d4af60d238c0aa7380e" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-noble-arm64-mdtraj-20240323-153821-juju-7f2275-prod-proposed-migration-environment-2", "imageRef": "28ecccfc-4cb0-4cc6-a280-209e2d140e10", "flavorRef": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "user_data": "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", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-2", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-5.secgroup"}], "networks": [{"uuid": "6ea4839c-9760-4b54-ab7d-70a6312667d1"}]}}'
777s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 403 115
777s DEBUG (session:548) RESP: [403] Connection: Keep-Alive Content-Length: 115 Content-Type: application/json; charset=UTF-8 Date: Sat, 23 Mar 2024 15:45:34 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-78abf652-fba6-45c8-bbaa-cb5ca281ad40 x-openstack-request-id: req-78abf652-fba6-45c8-bbaa-cb5ca281ad40
777s DEBUG (session:580) RESP BODY: {"forbidden": {"code": 403, "message": "Quota exceeded for cores: Requested 2, but already used 140 of 140 cores"}}
777s DEBUG (session:936) POST call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers used request id req-78abf652-fba6-45c8-bbaa-cb5ca281ad40
777s DEBUG (shell:822) Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-78abf652-fba6-45c8-bbaa-cb5ca281ad40)
777s Traceback (most recent call last):
777s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main
777s     OpenStackComputeShell().main(argv)
777s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main
777s     args.func(self.cs, args)
777s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 971, in do_boot
777s     server = cs.servers.create(*boot_args, **boot_kwargs)
777s   File "/usr/lib/python3/dist-packages/novaclient/v2/servers.py", line 1477, in create
777s     return self._boot(response_key, *boot_args, **boot_kwargs)
777s   File "/usr/lib/python3/dist-packages/novaclient/v2/servers.py", line 836, in _boot
777s     return self._create('/servers', body, response_key,
777s   File "/usr/lib/python3/dist-packages/novaclient/base.py", line 363, in _create
777s     resp, body = self.api.client.post(url, body=body)
777s   File "/usr/lib/python3/dist-packages/keystoneauth1/adapter.py", line 392, in post
777s     return self.request(url, 'POST', **kwargs)
777s   File "/usr/lib/python3/dist-packages/novaclient/client.py", line 78, in request
777s     raise exceptions.from_response(resp, body, url, method)
777s novaclient.exceptions.Forbidden: Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-78abf652-fba6-45c8-bbaa-cb5ca281ad40)
777s ERROR (Forbidden): Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-78abf652-fba6-45c8-bbaa-cb5ca281ad40)
835s autopkgtest [15:52:17]: testbed dpkg architecture: arm64
835s autopkgtest [15:52:17]: testbed apt version: 2.7.12
841s autopkgtest [15:52:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup
841s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
842s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB]
842s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
842s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB]
842s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB]
842s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [667 kB]
842s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
842s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB]
842s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
842s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4345 kB]
843s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
843s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB]
843s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
844s Fetched 9770 kB in 2s (4753 kB/s)
845s Reading package lists...
850s Reading package lists...
851s Building dependency tree...
851s Reading state information...
851s Calculating upgrade...
852s The following packages will be upgraded:
852s   cloud-init fonts-ubuntu-console libbsd0 libc-bin libc6 locales
852s   python3-markupsafe
852s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
852s Need to get 8268 kB of archives.
852s After this operation, 63.5 kB disk space will be freed.
852s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.39-0ubuntu6 [2776 kB]
853s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.39-0ubuntu6 [591 kB]
853s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libbsd0 arm64 0.12.1-1 [41.0 kB]
853s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 locales all 2.39-0ubuntu6 [4232 kB]
853s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
853s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 python3-markupsafe arm64 2.1.5-1build1 [12.5 kB]
853s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
855s Preconfiguring packages ...
855s Fetched 8268 kB in 1s (9379 kB/s)
855s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74820 files and directories currently installed.)
855s Preparing to unpack .../libc6_2.39-0ubuntu6_arm64.deb ...
856s Unpacking libc6:arm64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
856s Setting up libc6:arm64 (2.39-0ubuntu6) ...
857s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74820 files and directories currently installed.)
857s Preparing to unpack .../libc-bin_2.39-0ubuntu6_arm64.deb ...
857s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
857s Setting up libc-bin (2.39-0ubuntu6) ...
857s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74820 files and directories currently installed.)
857s Preparing to unpack .../libbsd0_0.12.1-1_arm64.deb ...
857s Unpacking libbsd0:arm64 (0.12.1-1) over (0.11.8-1) ...
857s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ...
857s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
857s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
857s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
857s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_arm64.deb ...
857s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
857s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
858s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
858s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
858s Setting up cloud-init (24.1.2-0ubuntu1) ...
860s Setting up locales (2.39-0ubuntu6) ...
861s Generating locales (this might take a while)...
864s   en_US.UTF-8... done
864s Generation complete.
864s Setting up python3-markupsafe (2.1.5-1build1) ...
864s Setting up libbsd0:arm64 (0.12.1-1) ...
864s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
864s Processing triggers for man-db (2.12.0-3) ...
865s Processing triggers for libc-bin (2.39-0ubuntu6) ...
866s Reading package lists...
866s Building dependency tree...
866s Reading state information...
868s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
869s sh: Attempting to set up Debian/Ubuntu apt sources automatically
869s sh: Distribution appears to be Ubuntu
871s Reading package lists...
871s Building dependency tree...
871s Reading state information...
872s eatmydata is already the newest version (131-1).
872s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
872s Reading package lists...
873s Building dependency tree...
873s Reading state information...
874s dbus is already the newest version (1.14.10-4ubuntu1).
874s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
874s Reading package lists...
874s Building dependency tree...
874s Reading state information...
876s rng-tools-debian is already the newest version (2.4).
876s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
876s Reading package lists...
876s Building dependency tree...
876s Reading state information...
877s The following packages will be REMOVED:
877s   cloud-init* python3-configobj* python3-debconf*
878s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
878s After this operation, 3256 kB disk space will be freed.
878s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74819 files and directories currently installed.)
878s Removing cloud-init (24.1.2-0ubuntu1) ...
879s Removing python3-configobj (5.0.8-3) ...
879s Removing python3-debconf (1.5.86) ...
879s Processing triggers for man-db (2.12.0-3) ...
879s (Reading database ... 
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(Reading database ... 10%
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(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74430 files and directories currently installed.)
879s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
880s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
880s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
880s invoke-rc.d: policy-rc.d denied execution of try-restart.
880s Reading package lists...
881s Building dependency tree...
881s Reading state information...
881s linux-generic is already the newest version (6.8.0-11.11+1).
881s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
882s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
882s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
882s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
885s Reading package lists...
885s Reading package lists...
885s Building dependency tree...
885s Reading state information...
886s Calculating upgrade...
887s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
887s Reading package lists...
887s Building dependency tree...
887s Reading state information...
887s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
888s autopkgtest [15:53:10]: rebooting testbed after setup commands that affected boot
917s autopkgtest [15:53:39]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
921s autopkgtest [15:53:43]: @@@@@@@@@@@@@@@@@@@@ apt-source mdtraj
925s Get:1 http://ftpmaster.internal/ubuntu noble/universe mdtraj 1.9.9-1ubuntu1 (dsc) [2622 B]
925s Get:2 http://ftpmaster.internal/ubuntu noble/universe mdtraj 1.9.9-1ubuntu1 (tar) [21.7 MB]
925s Get:3 http://ftpmaster.internal/ubuntu noble/universe mdtraj 1.9.9-1ubuntu1 (diff) [296 kB]
926s gpgv: Signature made Sun Mar 10 17:47:57 2024 UTC
926s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
926s gpgv: Can't check signature: No public key
926s dpkg-source: warning: cannot verify inline signature for ./mdtraj_1.9.9-1ubuntu1.dsc: no acceptable signature found
928s autopkgtest [15:53:50]: testing package mdtraj version 1.9.9-1ubuntu1
929s autopkgtest [15:53:51]: build not needed
935s autopkgtest [15:53:57]: test command1: preparing testbed
951s Reading package lists...
951s Building dependency tree...
951s Reading state information...
952s Starting pkgProblemResolver with broken count: 0
952s Starting 2 pkgProblemResolver with broken count: 0
952s Done
952s The following additional packages will be installed:
952s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gdb
952s   libaec0 libbabeltrace1 libblas3 libblosc1 libblosc2-2 libdebuginfod-common
952s   libdebuginfod1 libdeflate0 libdw1 libfontconfig1 libgfortran5 libgomp1
952s   libgraphite2-3 libharfbuzz0b libhdf5-103-1 libimagequant0 libjbig0
952s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
952s   liblcms2-2 liblerc4 libnorm1t64 libopenjp2-7 libpgm-5.3-0t64
952s   libpython3.11-minimal libpython3.11-stdlib libpython3.12 libqhull-r8.0
952s   libraqm0 libsharpyuv0 libsnappy1v5 libsodium23 libsource-highlight-common
952s   libsource-highlight4v5 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7
952s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 libzmq5
952s   python-matplotlib-data python-tables-data python3-appdirs python3-asttokens
952s   python3-astunparse python3-brotli python3-bytecode python3-comm
952s   python3-contourpy python3-coverage python3-cpuinfo python3-cycler
952s   python3-dateutil python3-debugpy python3-decorator python3-distutils
952s   python3-entrypoints python3-executing python3-fastjsonschema
952s   python3-fonttools python3-fs python3-iniconfig python3-ipykernel
952s   python3-ipython python3-jedi python3-joblib python3-jupyter-client
952s   python3-jupyter-core python3-kiwisolver python3-lib2to3 python3-lxml
952s   python3-lz4 python3-matplotlib python3-matplotlib-inline python3-mdtraj
952s   python3-mpmath python3-nbformat python3-nest-asyncio python3-networkx
952s   python3-numexpr python3-numpy python3-packaging python3-pandas
952s   python3-pandas-lib python3-parso python3-pexpect python3-pil
952s   python3-pil.imagetk python3-platformdirs python3-pluggy
952s   python3-prompt-toolkit python3-psutil python3-ptyprocess python3-pure-eval
952s   python3-py python3-pydevd python3-pytest python3-scipy python3-setuptools
952s   python3-sklearn python3-sklearn-lib python3-stack-data python3-sympy
952s   python3-tables python3-tables-lib python3-threadpoolctl python3-tk
952s   python3-tornado python3-traitlets python3-ufolib2 python3-unicodedata2
952s   python3-wcwidth python3-zmq python3.11 python3.11-minimal tk8.6-blt2.5
952s   unicode-data x11-common
952s Suggested packages:
952s   blt-demo gdb-doc gdbserver libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6
952s   python-bytecode-doc python-coverage-doc python-cycler-doc
952s   python-fastjsonschema-doc python-ipython-doc python3-pip python-lxml-doc
952s   cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
952s   inkscape ipython3 librsvg2-common python3-cairocffi python3-gi-cairo
952s   python3-gobject python3-pyqt5 python3-sip texlive-extra-utils
952s   texlive-latex-extra python-mdtraj-doc python-mpmath-doc python3-gmpy2
952s   python-networkx-doc python3-gdal python3-pydot python3-pygraphviz gcc
952s   gfortran python3-dev python-pandas-doc python3-statsmodels
952s   python-pexpect-doc python-pil-doc subversion pydevd python-scipy-doc
952s   python-setuptools-doc python3-dap python-sklearn-doc texlive-fonts-extra
952s   python-sympy-doc python3-netcdf4 python-tables-doc vitables tix
952s   python3-tk-dbg python3-pycurl python-tornado-doc python3-twisted
952s   python3.11-venv python3.11-doc binfmt-support
952s Recommended packages:
952s   libc-dbg javascript-common python3-simplejson python3-bs4 python3-cssselect
952s   python3-html5lib python3-bottleneck python3-odf python3-openpyxl
952s   python3-olefile g++ | c++-compiler isympy-common
953s The following NEW packages will be installed:
953s   autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono
953s   fonts-lyx gdb libaec0 libbabeltrace1 libblas3 libblosc1 libblosc2-2
953s   libdebuginfod-common libdebuginfod1 libdeflate0 libdw1 libfontconfig1
953s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1
953s   libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui
953s   liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libnorm1t64 libopenjp2-7
953s   libpgm-5.3-0t64 libpython3.11-minimal libpython3.11-stdlib libpython3.12
953s   libqhull-r8.0 libraqm0 libsharpyuv0 libsnappy1v5 libsodium23
953s   libsource-highlight-common libsource-highlight4v5 libsz2 libtcl8.6 libtiff6
953s   libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1
953s   libxss1 libzmq5 python-matplotlib-data python-tables-data python3-appdirs
953s   python3-asttokens python3-astunparse python3-brotli python3-bytecode
953s   python3-comm python3-contourpy python3-coverage python3-cpuinfo
953s   python3-cycler python3-dateutil python3-debugpy python3-decorator
953s   python3-distutils python3-entrypoints python3-executing
953s   python3-fastjsonschema python3-fonttools python3-fs python3-iniconfig
953s   python3-ipykernel python3-ipython python3-jedi python3-joblib
953s   python3-jupyter-client python3-jupyter-core python3-kiwisolver
953s   python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib
953s   python3-matplotlib-inline python3-mdtraj python3-mpmath python3-nbformat
953s   python3-nest-asyncio python3-networkx python3-numexpr python3-numpy
953s   python3-packaging python3-pandas python3-pandas-lib python3-parso
953s   python3-pexpect python3-pil python3-pil.imagetk python3-platformdirs
953s   python3-pluggy python3-prompt-toolkit python3-psutil python3-ptyprocess
953s   python3-pure-eval python3-py python3-pydevd python3-pytest python3-scipy
953s   python3-setuptools python3-sklearn python3-sklearn-lib python3-stack-data
953s   python3-sympy python3-tables python3-tables-lib python3-threadpoolctl
953s   python3-tk python3-tornado python3-traitlets python3-ufolib2
953s   python3-unicodedata2 python3-wcwidth python3-zmq python3.11
953s   python3.11-minimal tk8.6-blt2.5 unicode-data x11-common
953s 0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded.
953s Need to get 107 MB/107 MB of archives.
953s After this operation, 522 MB of additional disk space will be used.
953s Get:1 /tmp/autopkgtest.DDZHGr/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [772 B]
953s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB]
953s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB]
953s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libdebuginfod-common all 0.190-1 [14.0 kB]
953s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB]
953s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB]
953s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
953s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
953s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
953s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
953s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
953s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
953s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
953s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
953s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
953s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB]
953s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [618 kB]
953s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 blt arm64 2.5.3+dfsg-7 [4826 B]
953s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lyx all 2.4.0~RC3-1 [170 kB]
953s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1 arm64 0.190-1 [254 kB]
953s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libbabeltrace1 arm64 1.5.11-3build1 [158 kB]
953s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libdebuginfod1 arm64 0.190-1 [16.0 kB]
953s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB]
954s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libsource-highlight-common all 3.1.9-4.3 [64.1 kB]
954s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libsource-highlight4v5 arm64 3.1.9-4.2build2 [243 kB]
954s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gdb arm64 15.0.50.20240219-0ubuntu1 [4881 kB]
954s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB]
954s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
954s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB]
954s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB]
954s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc2-2 arm64 2.13.1+ds-1ubuntu1 [147 kB]
954s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
954s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
954s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
954s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
954s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
954s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B]
954s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB]
954s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB]
954s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
954s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
954s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
954s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
954s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
954s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB]
954s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB]
954s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
954s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1 [149 kB]
954s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1 [162 kB]
954s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB]
954s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB]
954s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
954s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libsodium23 arm64 1.0.18-1build2 [123 kB]
954s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
954s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
954s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
954s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB]
954s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB]
954s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.39-0exp1 [166 kB]
954s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libzmq5 arm64 4.3.5-1build1 [247 kB]
954s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB]
954s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 python-tables-data all 3.9.2-1 [56.7 kB]
954s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB]
954s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-asttokens all 2.4.1-1 [20.9 kB]
954s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-astunparse all 1.6.3-2 [13.5 kB]
954s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-brotli arm64 1.1.0-2 [345 kB]
954s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-bytecode all 0.15.1-3 [44.7 kB]
954s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-traitlets all 5.5.0-2 [85.0 kB]
954s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-comm all 0.2.1-1 [7016 B]
954s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB]
954s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-contourpy arm64 1.0.7-1build2 [244 kB]
954s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-coverage arm64 7.3.2-0ubuntu1 [147 kB]
954s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cpuinfo all 9.0.0-1 [21.2 kB]
954s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cycler all 0.11.0-2 [8202 B]
954s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB]
954s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pydevd arm64 2.10.0+ds-10ubuntu1 [600 kB]
954s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-debugpy all 1.8.0+ds-4ubuntu2 [652 kB]
954s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
954s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB]
954s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB]
954s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-entrypoints all 0.4-2 [7146 B]
954s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-executing all 2.0.1-0.1 [23.3 kB]
954s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fastjsonschema all 2.19.0-1 [19.6 kB]
954s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB]
955s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
955s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mpmath all 1.2.1-3 [421 kB]
955s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sympy all 1.12-7 [3966 kB]
955s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fs all 2.4.16-3 [91.1 kB]
955s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.1.0-1 [2042 kB]
955s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build2 [28.4 kB]
955s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1 [362 kB]
955s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 unicode-data all 15.1.0-1 [8878 kB]
955s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fonttools arm64 4.46.0-1 [1625 kB]
955s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
955s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-parso all 0.8.3-1 [67.2 kB]
955s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-jedi all 0.18.2-1ubuntu1 [692 kB]
955s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib-inline all 0.1.6-2 [8784 B]
955s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 python3-ptyprocess all 0.7.0-5 [15.1 kB]
955s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pexpect all 4.9-2 [48.1 kB]
955s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB]
955s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-prompt-toolkit all 3.0.43-1 [256 kB]
955s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pure-eval all 0.2.2-1 [11.3 kB]
955s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-stack-data all 0.6.3-1 [22.0 kB]
955s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 python3-setuptools all 68.1.2-2 [396 kB]
956s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ipython all 8.20.0-1 [561 kB]
956s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-platformdirs all 4.2.0-1 [16.1 kB]
956s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-jupyter-core all 5.3.2-1ubuntu1 [25.5 kB]
956s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-nest-asyncio all 1.5.4-1 [6256 B]
956s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tornado arm64 6.4.0-1 [297 kB]
956s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-py all 1.11.0-2 [72.7 kB]
956s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-zmq arm64 24.0.1-5 [363 kB]
956s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-jupyter-client all 7.4.9-2ubuntu1 [90.5 kB]
956s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB]
956s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 python3-psutil arm64 5.9.8-1 [196 kB]
956s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ipykernel all 6.24.0-3 [105 kB]
956s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-joblib all 1.3.2-1 [207 kB]
956s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-kiwisolver arm64 1.4.4-2 [48.5 kB]
956s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB]
956s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB]
956s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tk arm64 3.11.5-1 [112 kB]
956s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pil.imagetk arm64 10.2.0-1 [9708 B]
956s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib arm64 3.6.3-1ubuntu3 [7291 kB]
956s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 python3-networkx all 2.8.8-1ubuntu1 [1468 kB]
956s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB]
956s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
956s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-numexpr arm64 2.9.0-1 [87.9 kB]
956s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-tables-lib arm64 3.9.2-1 [1068 kB]
956s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-tables all 3.9.2-1 [467 kB]
956s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mdtraj arm64 1.9.9-1ubuntu1 [1113 kB]
956s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB]
956s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB]
956s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB]
956s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
956s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn-lib arm64 1.4.1.post1+dfsg-1 [6663 kB]
957s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB]
958s Preconfiguring packages ...
958s Fetched 107 MB in 4s (26.5 MB/s)
958s Selecting previously unselected package libpython3.11-minimal:arm64.
959s (Reading database ... 
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(Reading database ... 74375 files and directories currently installed.)
959s Preparing to unpack .../000-libpython3.11-minimal_3.11.8-1_arm64.deb ...
959s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ...
959s Selecting previously unselected package python3.11-minimal.
959s Preparing to unpack .../001-python3.11-minimal_3.11.8-1_arm64.deb ...
959s Unpacking python3.11-minimal (3.11.8-1) ...
959s Selecting previously unselected package libdebuginfod-common.
959s Preparing to unpack .../002-libdebuginfod-common_0.190-1_all.deb ...
959s Unpacking libdebuginfod-common (0.190-1) ...
959s Selecting previously unselected package libpython3.11-stdlib:arm64.
959s Preparing to unpack .../003-libpython3.11-stdlib_3.11.8-1_arm64.deb ...
959s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ...
959s Selecting previously unselected package python3.11.
960s Preparing to unpack .../004-python3.11_3.11.8-1_arm64.deb ...
960s Unpacking python3.11 (3.11.8-1) ...
960s Selecting previously unselected package libtcl8.6:arm64.
960s Preparing to unpack .../005-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
960s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
960s Selecting previously unselected package fonts-dejavu-mono.
960s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ...
960s Unpacking fonts-dejavu-mono (2.37-8) ...
960s Selecting previously unselected package fonts-dejavu-core.
960s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ...
960s Unpacking fonts-dejavu-core (2.37-8) ...
960s Selecting previously unselected package fontconfig-config.
960s Preparing to unpack .../008-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
960s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
960s Selecting previously unselected package libfontconfig1:arm64.
960s Preparing to unpack .../009-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
960s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
960s Selecting previously unselected package libxrender1:arm64.
960s Preparing to unpack .../010-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
960s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
960s Selecting previously unselected package libxft2:arm64.
960s Preparing to unpack .../011-libxft2_2.3.6-1_arm64.deb ...
960s Unpacking libxft2:arm64 (2.3.6-1) ...
960s Selecting previously unselected package x11-common.
960s Preparing to unpack .../012-x11-common_1%3a7.7+23ubuntu2_all.deb ...
960s Unpacking x11-common (1:7.7+23ubuntu2) ...
961s Selecting previously unselected package libxss1:arm64.
961s Preparing to unpack .../013-libxss1_1%3a1.2.3-1build2_arm64.deb ...
961s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
961s Selecting previously unselected package libtk8.6:arm64.
961s Preparing to unpack .../014-libtk8.6_8.6.14-1_arm64.deb ...
961s Unpacking libtk8.6:arm64 (8.6.14-1) ...
961s Selecting previously unselected package tk8.6-blt2.5.
961s Preparing to unpack .../015-tk8.6-blt2.5_2.5.3+dfsg-7_arm64.deb ...
961s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ...
961s Selecting previously unselected package blt.
961s Preparing to unpack .../016-blt_2.5.3+dfsg-7_arm64.deb ...
961s Unpacking blt (2.5.3+dfsg-7) ...
961s Selecting previously unselected package fonts-lyx.
961s Preparing to unpack .../017-fonts-lyx_2.4.0~RC3-1_all.deb ...
961s Unpacking fonts-lyx (2.4.0~RC3-1) ...
961s Selecting previously unselected package libdw1:arm64.
961s Preparing to unpack .../018-libdw1_0.190-1_arm64.deb ...
961s Unpacking libdw1:arm64 (0.190-1) ...
961s Selecting previously unselected package libbabeltrace1:arm64.
961s Preparing to unpack .../019-libbabeltrace1_1.5.11-3build1_arm64.deb ...
961s Unpacking libbabeltrace1:arm64 (1.5.11-3build1) ...
961s Selecting previously unselected package libdebuginfod1:arm64.
961s Preparing to unpack .../020-libdebuginfod1_0.190-1_arm64.deb ...
961s Unpacking libdebuginfod1:arm64 (0.190-1) ...
961s Selecting previously unselected package libpython3.12:arm64.
961s Preparing to unpack .../021-libpython3.12_3.12.2-1_arm64.deb ...
961s Unpacking libpython3.12:arm64 (3.12.2-1) ...
961s Selecting previously unselected package libsource-highlight-common.
961s Preparing to unpack .../022-libsource-highlight-common_3.1.9-4.3_all.deb ...
961s Unpacking libsource-highlight-common (3.1.9-4.3) ...
961s Selecting previously unselected package libsource-highlight4v5:arm64.
961s Preparing to unpack .../023-libsource-highlight4v5_3.1.9-4.2build2_arm64.deb ...
961s Unpacking libsource-highlight4v5:arm64 (3.1.9-4.2build2) ...
961s Selecting previously unselected package gdb.
961s Preparing to unpack .../024-gdb_15.0.50.20240219-0ubuntu1_arm64.deb ...
961s Unpacking gdb (15.0.50.20240219-0ubuntu1) ...
961s Selecting previously unselected package libaec0:arm64.
961s Preparing to unpack .../025-libaec0_1.1.2-1_arm64.deb ...
961s Unpacking libaec0:arm64 (1.1.2-1) ...
961s Selecting previously unselected package libblas3:arm64.
961s Preparing to unpack .../026-libblas3_3.12.0-3_arm64.deb ...
961s Unpacking libblas3:arm64 (3.12.0-3) ...
961s Selecting previously unselected package libsnappy1v5:arm64.
961s Preparing to unpack .../027-libsnappy1v5_1.1.10-1_arm64.deb ...
961s Unpacking libsnappy1v5:arm64 (1.1.10-1) ...
961s Selecting previously unselected package libblosc1:arm64.
961s Preparing to unpack .../028-libblosc1_1.21.5+ds-1_arm64.deb ...
961s Unpacking libblosc1:arm64 (1.21.5+ds-1) ...
961s Selecting previously unselected package libblosc2-2:arm64.
961s Preparing to unpack .../029-libblosc2-2_2.13.1+ds-1ubuntu1_arm64.deb ...
961s Unpacking libblosc2-2:arm64 (2.13.1+ds-1ubuntu1) ...
961s Selecting previously unselected package libdeflate0:arm64.
961s Preparing to unpack .../030-libdeflate0_1.19-1_arm64.deb ...
961s Unpacking libdeflate0:arm64 (1.19-1) ...
961s Selecting previously unselected package libgfortran5:arm64.
961s Preparing to unpack .../031-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
961s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
962s Selecting previously unselected package libgomp1:arm64.
962s Preparing to unpack .../032-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
962s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
962s Selecting previously unselected package libgraphite2-3:arm64.
962s Preparing to unpack .../033-libgraphite2-3_1.3.14-2_arm64.deb ...
962s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
962s Selecting previously unselected package libharfbuzz0b:arm64.
962s Preparing to unpack .../034-libharfbuzz0b_8.3.0-2_arm64.deb ...
962s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
962s Selecting previously unselected package libsz2:arm64.
962s Preparing to unpack .../035-libsz2_1.1.2-1_arm64.deb ...
962s Unpacking libsz2:arm64 (1.1.2-1) ...
962s Selecting previously unselected package libhdf5-103-1:arm64.
962s Preparing to unpack .../036-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ...
962s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ...
962s Selecting previously unselected package libimagequant0:arm64.
962s Preparing to unpack .../037-libimagequant0_2.18.0-1_arm64.deb ...
962s Unpacking libimagequant0:arm64 (2.18.0-1) ...
962s Selecting previously unselected package libjpeg-turbo8:arm64.
962s Preparing to unpack .../038-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
962s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
962s Selecting previously unselected package libjpeg8:arm64.
962s Preparing to unpack .../039-libjpeg8_8c-2ubuntu11_arm64.deb ...
962s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
962s Selecting previously unselected package libjs-jquery.
962s Preparing to unpack .../040-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
962s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
962s Selecting previously unselected package libjs-jquery-ui.
962s Preparing to unpack .../041-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
962s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
962s Selecting previously unselected package liblapack3:arm64.
963s Preparing to unpack .../042-liblapack3_3.12.0-3_arm64.deb ...
963s Unpacking liblapack3:arm64 (3.12.0-3) ...
963s Selecting previously unselected package liblbfgsb0:arm64.
963s Preparing to unpack .../043-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ...
963s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ...
963s Selecting previously unselected package liblcms2-2:arm64.
963s Preparing to unpack .../044-liblcms2-2_2.14-2_arm64.deb ...
963s Unpacking liblcms2-2:arm64 (2.14-2) ...
963s Selecting previously unselected package liblerc4:arm64.
963s Preparing to unpack .../045-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
963s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
963s Selecting previously unselected package libnorm1t64:arm64.
963s Preparing to unpack .../046-libnorm1t64_1.5.9+dfsg-3.1_arm64.deb ...
963s Unpacking libnorm1t64:arm64 (1.5.9+dfsg-3.1) ...
963s Selecting previously unselected package libpgm-5.3-0t64:arm64.
963s Preparing to unpack .../047-libpgm-5.3-0t64_5.3.128~dfsg-2.1_arm64.deb ...
963s Unpacking libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1) ...
963s Selecting previously unselected package libqhull-r8.0:arm64.
963s Preparing to unpack .../048-libqhull-r8.0_2020.2-6_arm64.deb ...
963s Unpacking libqhull-r8.0:arm64 (2020.2-6) ...
963s Selecting previously unselected package libraqm0:arm64.
963s Preparing to unpack .../049-libraqm0_0.10.1-1_arm64.deb ...
963s Unpacking libraqm0:arm64 (0.10.1-1) ...
963s Selecting previously unselected package libsharpyuv0:arm64.
963s Preparing to unpack .../050-libsharpyuv0_1.3.2-0.4_arm64.deb ...
963s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
963s Selecting previously unselected package libsodium23:arm64.
963s Preparing to unpack .../051-libsodium23_1.0.18-1build2_arm64.deb ...
963s Unpacking libsodium23:arm64 (1.0.18-1build2) ...
963s Selecting previously unselected package libjbig0:arm64.
963s Preparing to unpack .../052-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
963s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
963s Selecting previously unselected package libwebp7:arm64.
963s Preparing to unpack .../053-libwebp7_1.3.2-0.4_arm64.deb ...
963s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
963s Selecting previously unselected package libtiff6:arm64.
963s Preparing to unpack .../054-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
963s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
963s Selecting previously unselected package libwebpdemux2:arm64.
963s Preparing to unpack .../055-libwebpdemux2_1.3.2-0.4_arm64.deb ...
963s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ...
963s Selecting previously unselected package libwebpmux3:arm64.
963s Preparing to unpack .../056-libwebpmux3_1.3.2-0.4_arm64.deb ...
963s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ...
963s Selecting previously unselected package libxslt1.1:arm64.
963s Preparing to unpack .../057-libxslt1.1_1.1.39-0exp1_arm64.deb ...
963s Unpacking libxslt1.1:arm64 (1.1.39-0exp1) ...
963s Selecting previously unselected package libzmq5:arm64.
963s Preparing to unpack .../058-libzmq5_4.3.5-1build1_arm64.deb ...
963s Unpacking libzmq5:arm64 (4.3.5-1build1) ...
963s Selecting previously unselected package python-matplotlib-data.
964s Preparing to unpack .../059-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ...
964s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ...
964s Selecting previously unselected package python-tables-data.
964s Preparing to unpack .../060-python-tables-data_3.9.2-1_all.deb ...
964s Unpacking python-tables-data (3.9.2-1) ...
964s Selecting previously unselected package python3-appdirs.
964s Preparing to unpack .../061-python3-appdirs_1.4.4-4_all.deb ...
964s Unpacking python3-appdirs (1.4.4-4) ...
964s Selecting previously unselected package python3-asttokens.
964s Preparing to unpack .../062-python3-asttokens_2.4.1-1_all.deb ...
964s Unpacking python3-asttokens (2.4.1-1) ...
964s Selecting previously unselected package python3-astunparse.
964s Preparing to unpack .../063-python3-astunparse_1.6.3-2_all.deb ...
964s Unpacking python3-astunparse (1.6.3-2) ...
964s Selecting previously unselected package python3-brotli.
964s Preparing to unpack .../064-python3-brotli_1.1.0-2_arm64.deb ...
964s Unpacking python3-brotli (1.1.0-2) ...
965s Selecting previously unselected package python3-bytecode.
965s Preparing to unpack .../065-python3-bytecode_0.15.1-3_all.deb ...
965s Unpacking python3-bytecode (0.15.1-3) ...
965s Selecting previously unselected package python3-traitlets.
965s Preparing to unpack .../066-python3-traitlets_5.5.0-2_all.deb ...
965s Unpacking python3-traitlets (5.5.0-2) ...
965s Selecting previously unselected package python3-comm.
965s Preparing to unpack .../067-python3-comm_0.2.1-1_all.deb ...
965s Unpacking python3-comm (0.2.1-1) ...
965s Selecting previously unselected package python3-numpy.
965s Preparing to unpack .../068-python3-numpy_1%3a1.24.2-2_arm64.deb ...
965s Unpacking python3-numpy (1:1.24.2-2) ...
965s Selecting previously unselected package python3-contourpy.
965s Preparing to unpack .../069-python3-contourpy_1.0.7-1build2_arm64.deb ...
965s Unpacking python3-contourpy (1.0.7-1build2) ...
965s Selecting previously unselected package python3-coverage.
965s Preparing to unpack .../070-python3-coverage_7.3.2-0ubuntu1_arm64.deb ...
965s Unpacking python3-coverage (7.3.2-0ubuntu1) ...
965s Selecting previously unselected package python3-cpuinfo.
965s Preparing to unpack .../071-python3-cpuinfo_9.0.0-1_all.deb ...
965s Unpacking python3-cpuinfo (9.0.0-1) ...
965s Selecting previously unselected package python3-cycler.
965s Preparing to unpack .../072-python3-cycler_0.11.0-2_all.deb ...
965s Unpacking python3-cycler (0.11.0-2) ...
965s Selecting previously unselected package python3-dateutil.
965s Preparing to unpack .../073-python3-dateutil_2.8.2-3_all.deb ...
965s Unpacking python3-dateutil (2.8.2-3) ...
965s Selecting previously unselected package python3-pydevd.
965s Preparing to unpack .../074-python3-pydevd_2.10.0+ds-10ubuntu1_arm64.deb ...
965s Unpacking python3-pydevd (2.10.0+ds-10ubuntu1) ...
965s Selecting previously unselected package python3-debugpy.
965s Preparing to unpack .../075-python3-debugpy_1.8.0+ds-4ubuntu2_all.deb ...
965s Unpacking python3-debugpy (1.8.0+ds-4ubuntu2) ...
965s Selecting previously unselected package python3-decorator.
965s Preparing to unpack .../076-python3-decorator_5.1.1-5_all.deb ...
965s Unpacking python3-decorator (5.1.1-5) ...
965s Selecting previously unselected package python3-lib2to3.
965s Preparing to unpack .../077-python3-lib2to3_3.11.5-1_all.deb ...
965s Unpacking python3-lib2to3 (3.11.5-1) ...
966s Selecting previously unselected package python3-distutils.
966s Preparing to unpack .../078-python3-distutils_3.11.5-1_all.deb ...
966s Unpacking python3-distutils (3.11.5-1) ...
966s Selecting previously unselected package python3-entrypoints.
966s Preparing to unpack .../079-python3-entrypoints_0.4-2_all.deb ...
966s Unpacking python3-entrypoints (0.4-2) ...
966s Selecting previously unselected package python3-executing.
966s Preparing to unpack .../080-python3-executing_2.0.1-0.1_all.deb ...
966s Unpacking python3-executing (2.0.1-0.1) ...
966s Selecting previously unselected package python3-fastjsonschema.
966s Preparing to unpack .../081-python3-fastjsonschema_2.19.0-1_all.deb ...
966s Unpacking python3-fastjsonschema (2.19.0-1) ...
966s Selecting previously unselected package python3-scipy.
966s Preparing to unpack .../082-python3-scipy_1.11.4-6_arm64.deb ...
966s Unpacking python3-scipy (1.11.4-6) ...
967s Selecting previously unselected package python3-ufolib2.
967s Preparing to unpack .../083-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
967s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
967s Selecting previously unselected package python3-mpmath.
967s Preparing to unpack .../084-python3-mpmath_1.2.1-3_all.deb ...
967s Unpacking python3-mpmath (1.2.1-3) ...
967s Selecting previously unselected package python3-sympy.
967s Preparing to unpack .../085-python3-sympy_1.12-7_all.deb ...
967s Unpacking python3-sympy (1.12-7) ...
968s Selecting previously unselected package python3-fs.
968s Preparing to unpack .../086-python3-fs_2.4.16-3_all.deb ...
968s Unpacking python3-fs (2.4.16-3) ...
968s Selecting previously unselected package python3-lxml:arm64.
968s Preparing to unpack .../087-python3-lxml_5.1.0-1_arm64.deb ...
968s Unpacking python3-lxml:arm64 (5.1.0-1) ...
968s Selecting previously unselected package python3-lz4.
969s Preparing to unpack .../088-python3-lz4_4.0.2+dfsg-1build2_arm64.deb ...
969s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ...
969s Selecting previously unselected package python3-unicodedata2.
969s Preparing to unpack .../089-python3-unicodedata2_15.1.0+ds-1_arm64.deb ...
969s Unpacking python3-unicodedata2 (15.1.0+ds-1) ...
969s Selecting previously unselected package unicode-data.
969s Preparing to unpack .../090-unicode-data_15.1.0-1_all.deb ...
969s Unpacking unicode-data (15.1.0-1) ...
969s Selecting previously unselected package python3-fonttools.
969s Preparing to unpack .../091-python3-fonttools_4.46.0-1_arm64.deb ...
969s Unpacking python3-fonttools (4.46.0-1) ...
969s Selecting previously unselected package python3-iniconfig.
970s Preparing to unpack .../092-python3-iniconfig_1.1.1-2_all.deb ...
970s Unpacking python3-iniconfig (1.1.1-2) ...
970s Selecting previously unselected package python3-parso.
970s Preparing to unpack .../093-python3-parso_0.8.3-1_all.deb ...
970s Unpacking python3-parso (0.8.3-1) ...
970s Selecting previously unselected package python3-jedi.
970s Preparing to unpack .../094-python3-jedi_0.18.2-1ubuntu1_all.deb ...
970s Unpacking python3-jedi (0.18.2-1ubuntu1) ...
970s Selecting previously unselected package python3-matplotlib-inline.
970s Preparing to unpack .../095-python3-matplotlib-inline_0.1.6-2_all.deb ...
970s Unpacking python3-matplotlib-inline (0.1.6-2) ...
970s Selecting previously unselected package python3-ptyprocess.
970s Preparing to unpack .../096-python3-ptyprocess_0.7.0-5_all.deb ...
970s Unpacking python3-ptyprocess (0.7.0-5) ...
970s Selecting previously unselected package python3-pexpect.
970s Preparing to unpack .../097-python3-pexpect_4.9-2_all.deb ...
970s Unpacking python3-pexpect (4.9-2) ...
970s Selecting previously unselected package python3-wcwidth.
971s Preparing to unpack .../098-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ...
971s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ...
971s Selecting previously unselected package python3-prompt-toolkit.
971s Preparing to unpack .../099-python3-prompt-toolkit_3.0.43-1_all.deb ...
971s Unpacking python3-prompt-toolkit (3.0.43-1) ...
971s Selecting previously unselected package python3-pure-eval.
971s Preparing to unpack .../100-python3-pure-eval_0.2.2-1_all.deb ...
971s Unpacking python3-pure-eval (0.2.2-1) ...
971s Selecting previously unselected package python3-stack-data.
971s Preparing to unpack .../101-python3-stack-data_0.6.3-1_all.deb ...
971s Unpacking python3-stack-data (0.6.3-1) ...
971s Selecting previously unselected package python3-setuptools.
971s Preparing to unpack .../102-python3-setuptools_68.1.2-2_all.deb ...
971s Unpacking python3-setuptools (68.1.2-2) ...
971s Selecting previously unselected package python3-ipython.
971s Preparing to unpack .../103-python3-ipython_8.20.0-1_all.deb ...
971s Unpacking python3-ipython (8.20.0-1) ...
971s Selecting previously unselected package python3-platformdirs.
972s Preparing to unpack .../104-python3-platformdirs_4.2.0-1_all.deb ...
972s Unpacking python3-platformdirs (4.2.0-1) ...
972s Selecting previously unselected package python3-jupyter-core.
972s Preparing to unpack .../105-python3-jupyter-core_5.3.2-1ubuntu1_all.deb ...
972s Unpacking python3-jupyter-core (5.3.2-1ubuntu1) ...
972s Selecting previously unselected package python3-nest-asyncio.
972s Preparing to unpack .../106-python3-nest-asyncio_1.5.4-1_all.deb ...
972s Unpacking python3-nest-asyncio (1.5.4-1) ...
972s Selecting previously unselected package python3-tornado.
972s Preparing to unpack .../107-python3-tornado_6.4.0-1_arm64.deb ...
972s Unpacking python3-tornado (6.4.0-1) ...
972s Selecting previously unselected package python3-py.
972s Preparing to unpack .../108-python3-py_1.11.0-2_all.deb ...
972s Unpacking python3-py (1.11.0-2) ...
972s Selecting previously unselected package python3-zmq.
972s Preparing to unpack .../109-python3-zmq_24.0.1-5_arm64.deb ...
972s Unpacking python3-zmq (24.0.1-5) ...
972s Selecting previously unselected package python3-jupyter-client.
972s Preparing to unpack .../110-python3-jupyter-client_7.4.9-2ubuntu1_all.deb ...
972s Unpacking python3-jupyter-client (7.4.9-2ubuntu1) ...
972s Selecting previously unselected package python3-packaging.
972s Preparing to unpack .../111-python3-packaging_23.2-1_all.deb ...
972s Unpacking python3-packaging (23.2-1) ...
972s Selecting previously unselected package python3-psutil.
973s Preparing to unpack .../112-python3-psutil_5.9.8-1_arm64.deb ...
973s Unpacking python3-psutil (5.9.8-1) ...
973s Selecting previously unselected package python3-ipykernel.
973s Preparing to unpack .../113-python3-ipykernel_6.24.0-3_all.deb ...
973s Unpacking python3-ipykernel (6.24.0-3) ...
973s Selecting previously unselected package python3-joblib.
973s Preparing to unpack .../114-python3-joblib_1.3.2-1_all.deb ...
973s Unpacking python3-joblib (1.3.2-1) ...
973s Selecting previously unselected package python3-kiwisolver.
973s Preparing to unpack .../115-python3-kiwisolver_1.4.4-2_arm64.deb ...
973s Unpacking python3-kiwisolver (1.4.4-2) ...
973s Selecting previously unselected package libopenjp2-7:arm64.
973s Preparing to unpack .../116-libopenjp2-7_2.5.0-2_arm64.deb ...
973s Unpacking libopenjp2-7:arm64 (2.5.0-2) ...
973s Selecting previously unselected package python3-pil:arm64.
973s Preparing to unpack .../117-python3-pil_10.2.0-1_arm64.deb ...
973s Unpacking python3-pil:arm64 (10.2.0-1) ...
973s Selecting previously unselected package python3-tk:arm64.
973s Preparing to unpack .../118-python3-tk_3.11.5-1_arm64.deb ...
973s Unpacking python3-tk:arm64 (3.11.5-1) ...
973s Selecting previously unselected package python3-pil.imagetk:arm64.
973s Preparing to unpack .../119-python3-pil.imagetk_10.2.0-1_arm64.deb ...
973s Unpacking python3-pil.imagetk:arm64 (10.2.0-1) ...
973s Selecting previously unselected package python3-matplotlib.
973s Preparing to unpack .../120-python3-matplotlib_3.6.3-1ubuntu3_arm64.deb ...
973s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ...
973s Selecting previously unselected package python3-networkx.
973s Preparing to unpack .../121-python3-networkx_2.8.8-1ubuntu1_all.deb ...
973s Unpacking python3-networkx (2.8.8-1ubuntu1) ...
973s Selecting previously unselected package python3-pandas-lib:arm64.
973s Preparing to unpack .../122-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_arm64.deb ...
973s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ...
973s Selecting previously unselected package python3-pandas.
973s Preparing to unpack .../123-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ...
973s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ...
974s Selecting previously unselected package python3-numexpr.
974s Preparing to unpack .../124-python3-numexpr_2.9.0-1_arm64.deb ...
974s Unpacking python3-numexpr (2.9.0-1) ...
974s Selecting previously unselected package python3-tables-lib.
974s Preparing to unpack .../125-python3-tables-lib_3.9.2-1_arm64.deb ...
974s Unpacking python3-tables-lib (3.9.2-1) ...
974s Selecting previously unselected package python3-tables.
974s Preparing to unpack .../126-python3-tables_3.9.2-1_all.deb ...
974s Unpacking python3-tables (3.9.2-1) ...
974s Selecting previously unselected package python3-mdtraj.
974s Preparing to unpack .../127-python3-mdtraj_1.9.9-1ubuntu1_arm64.deb ...
974s Unpacking python3-mdtraj (1.9.9-1ubuntu1) ...
974s Selecting previously unselected package python3-nbformat.
974s Preparing to unpack .../128-python3-nbformat_5.9.1-1_all.deb ...
974s Unpacking python3-nbformat (5.9.1-1) ...
974s Selecting previously unselected package python3-pluggy.
974s Preparing to unpack .../129-python3-pluggy_1.4.0-1_all.deb ...
974s Unpacking python3-pluggy (1.4.0-1) ...
974s Selecting previously unselected package python3-pytest.
974s Preparing to unpack .../130-python3-pytest_7.4.4-1_all.deb ...
974s Unpacking python3-pytest (7.4.4-1) ...
974s Selecting previously unselected package python3-threadpoolctl.
974s Preparing to unpack .../131-python3-threadpoolctl_3.1.0-1_all.deb ...
974s Unpacking python3-threadpoolctl (3.1.0-1) ...
974s Selecting previously unselected package python3-sklearn-lib:arm64.
974s Preparing to unpack .../132-python3-sklearn-lib_1.4.1.post1+dfsg-1_arm64.deb ...
974s Unpacking python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ...
974s Selecting previously unselected package python3-sklearn.
974s Preparing to unpack .../133-python3-sklearn_1.4.1.post1+dfsg-1_all.deb ...
974s Unpacking python3-sklearn (1.4.1.post1+dfsg-1) ...
974s Selecting previously unselected package autopkgtest-satdep.
975s Preparing to unpack .../134-1-autopkgtest-satdep.deb ...
975s Unpacking autopkgtest-satdep (0) ...
975s Setting up python3-entrypoints (0.4-2) ...
975s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
975s Setting up liblcms2-2:arm64 (2.14-2) ...
975s Setting up python3-iniconfig (1.1.1-2) ...
975s Setting up python3-tornado (6.4.0-1) ...
975s Setting up libnorm1t64:arm64 (1.5.9+dfsg-3.1) ...
975s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
975s Setting up libdw1:arm64 (0.190-1) ...
975s Setting up python3-pure-eval (0.2.2-1) ...
975s Setting up python3-astunparse (1.6.3-2) ...
975s Setting up libsodium23:arm64 (1.0.18-1build2) ...
975s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
975s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
976s Setting up python3-py (1.11.0-2) ...
976s Setting up libdebuginfod-common (0.190-1) ...
976s Setting up python3-joblib (1.3.2-1) ...
976s Setting up python3-parso (0.8.3-1) ...
976s Setting up python3-lz4 (4.0.2+dfsg-1build2) ...
977s Setting up python3-asttokens (2.4.1-1) ...
977s Setting up python3-unicodedata2 (15.1.0+ds-1) ...
977s Setting up fonts-lyx (2.4.0~RC3-1) ...
977s Setting up libdebuginfod1:arm64 (0.190-1) ...
977s Setting up python3-threadpoolctl (3.1.0-1) ...
977s Setting up x11-common (1:7.7+23ubuntu2) ...
977s Setting up libdeflate0:arm64 (1.19-1) ...
977s Setting up libqhull-r8.0:arm64 (2020.2-6) ...
977s Setting up libblosc2-2:arm64 (2.13.1+ds-1ubuntu1) ...
977s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
977s Setting up python3-networkx (2.8.8-1ubuntu1) ...
978s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420'
978s   "graph [edge [ source u'u\4200' target u'u\4200' ] "
978s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420'
978s   + "node [ id u'u\4200' label b ] ]"
978s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
978s Setting up libaec0:arm64 (1.1.2-1) ...
981s Setting up python3-platformdirs (4.2.0-1) ...
981s Setting up python3-psutil (5.9.8-1) ...
981s Setting up libsource-highlight-common (3.1.9-4.3) ...
981s Setting up libsnappy1v5:arm64 (1.1.10-1) ...
981s Setting up unicode-data (15.1.0-1) ...
981s Setting up libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1) ...
981s Setting up python3-decorator (5.1.1-5) ...
981s Setting up libblas3:arm64 (3.12.0-3) ...
981s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
981s Setting up python3-packaging (23.2-1) ...
981s Setting up python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ...
981s Setting up python3-executing (2.0.1-0.1) ...
981s Setting up python3-nest-asyncio (1.5.4-1) ...
981s Setting up python3-brotli (1.1.0-2) ...
981s Setting up python3-cycler (0.11.0-2) ...
981s Setting up libimagequant0:arm64 (2.18.0-1) ...
981s Setting up python3-bytecode (0.15.1-3) ...
981s Setting up fonts-dejavu-mono (2.37-8) ...
981s Setting up python3-kiwisolver (1.4.4-2) ...
981s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
981s Setting up fonts-dejavu-core (2.37-8) ...
981s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
981s Setting up python3-cpuinfo (9.0.0-1) ...
981s Setting up libbabeltrace1:arm64 (1.5.11-3build1) ...
981s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
981s Setting up python3-pluggy (1.4.0-1) ...
981s Setting up libwebp7:arm64 (1.3.2-0.4) ...
981s Setting up python3-fastjsonschema (2.19.0-1) ...
981s Setting up python3-traitlets (5.5.0-2) ...
981s Setting up libxslt1.1:arm64 (1.1.39-0exp1) ...
981s Setting up libblosc1:arm64 (1.21.5+ds-1) ...
981s Setting up libopenjp2-7:arm64 (2.5.0-2) ...
981s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
981s Setting up python3-dateutil (2.8.2-3) ...
981s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ...
981s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
981s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
981s Setting up python3-mpmath (1.2.1-3) ...
981s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ...
981s Setting up libwebpmux3:arm64 (1.3.2-0.4) ...
981s Setting up python3-lib2to3 (3.11.5-1) ...
981s Setting up python3-appdirs (1.4.4-4) ...
981s Setting up python3-stack-data (0.6.3-1) ...
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982s Setting up libpython3.12:arm64 (3.12.2-1) ...
982s Setting up python3-jupyter-core (5.3.2-1ubuntu1) ...
982s Setting up libsz2:arm64 (1.1.2-1) ...
982s Setting up libsource-highlight4v5:arm64 (3.1.9-4.2build2) ...
982s Setting up python3-ptyprocess (0.7.0-5) ...
982s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
982s Setting up python3-prompt-toolkit (3.0.43-1) ...
982s Setting up python3-distutils (3.11.5-1) ...
982s python3.12: can't get files for byte-compilation
982s Setting up python3.11-minimal (3.11.8-1) ...
983s Setting up python3-sympy (1.12-7) ...
988s Setting up liblapack3:arm64 (3.12.0-3) ...
988s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
988s Setting up libzmq5:arm64 (4.3.5-1build1) ...
988s Setting up python3-setuptools (68.1.2-2) ...
989s Setting up python3-jedi (0.18.2-1ubuntu1) ...
989s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
989s Setting up python3-pytest (7.4.4-1) ...
989s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ...
989s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ...
989s Setting up python3-nbformat (5.9.1-1) ...
989s Setting up python3-matplotlib-inline (0.1.6-2) ...
990s Setting up python3-comm (0.2.1-1) ...
990s Setting up python3-fs (2.4.16-3) ...
990s Setting up gdb (15.0.50.20240219-0ubuntu1) ...
990s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
990s Setting up python3-pexpect (4.9-2) ...
990s Setting up python3-zmq (24.0.1-5) ...
990s Setting up libraqm0:arm64 (0.10.1-1) ...
990s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ...
990s Setting up python3-lxml:arm64 (5.1.0-1) ...
990s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
990s Setting up python3-jupyter-client (7.4.9-2ubuntu1) ...
991s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
991s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ...
991s Setting up python3.11 (3.11.8-1) ...
991s Setting up libxft2:arm64 (2.3.6-1) ...
991s Setting up libtk8.6:arm64 (8.6.14-1) ...
991s Setting up python3-coverage (7.3.2-0ubuntu1) ...
992s Setting up python3-pil:arm64 (10.2.0-1) ...
992s Setting up python3-ipython (8.20.0-1) ...
992s Setting up python3-numpy (1:1.24.2-2) ...
994s Setting up python3-contourpy (1.0.7-1build2) ...
994s Setting up python3-pydevd (2.10.0+ds-10ubuntu1) ...
995s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ...
995s Setting up python3-scipy (1.11.4-6) ...
998s Setting up python3-tables-lib (3.9.2-1) ...
998s Setting up blt (2.5.3+dfsg-7) ...
998s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ...
998s Setting up python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ...
998s Setting up python3-tk:arm64 (3.11.5-1) ...
998s Setting up python3-debugpy (1.8.0+ds-4ubuntu2) ...
999s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
1003s Setting up python3-pil.imagetk:arm64 (10.2.0-1) ...
1003s Setting up python3-ipykernel (6.24.0-3) ...
1003s Setting up python3-sklearn (1.4.1.post1+dfsg-1) ...
1005s Setting up python3-numexpr (2.9.0-1) ...
1005s Setting up python3-tables (3.9.2-1) ...
1005s Setting up python3-mdtraj (1.9.9-1ubuntu1) ...
1005s /usr/lib/python3/dist-packages/mdtraj/formats/amberrst.py:271: SyntaxWarning: invalid escape sequence '\g'
1005s   """Read data from an AMBER ASCII restart file
1005s /usr/lib/python3/dist-packages/mdtraj/formats/amberrst.py:534: SyntaxWarning: invalid escape sequence '\g'
1005s   """Read data from an AMBER NetCDF restart file
1005s /usr/lib/python3/dist-packages/mdtraj/formats/gro.py:394: SyntaxWarning: invalid escape sequence '\d'
1005s   time = float(findall('t= *(\d+\.\d+)',comment)[-1])
1005s /usr/lib/python3/dist-packages/mdtraj/formats/gro.py:500: SyntaxWarning: invalid escape sequence '\.'
1005s   return match('^[-+]?[0-9]*\.?[0-9]*([eEdD][-+]?[0-9]+)?$',word)
1005s /usr/lib/python3/dist-packages/mdtraj/formats/gsd.py:228: SyntaxWarning: invalid escape sequence '\g'
1005s   """Write one or more frames of data to a gsd file.
1005s /usr/lib/python3/dist-packages/mdtraj/formats/lammpstrj.py:237: SyntaxWarning: invalid escape sequence '\g'
1005s   """Read data from a lammpstrj file.
1005s /usr/lib/python3/dist-packages/mdtraj/formats/lammpstrj.py:429: SyntaxWarning: invalid escape sequence '\g'
1005s   """Write the box lines in the header of a frame.
1005s /usr/lib/python3/dist-packages/mdtraj/formats/lammpstrj.py:476: SyntaxWarning: invalid escape sequence '\g'
1005s   """Write one or more frames of data to a lammpstrj file.
1005s /usr/lib/python3/dist-packages/mdtraj/formats/mol2.py:215: SyntaxWarning: invalid escape sequence '\s'
1005s   index_col=0, header=None, sep="\s+", engine='python')
1005s /usr/lib/python3/dist-packages/mdtraj/formats/mol2.py:222: SyntaxWarning: invalid escape sequence '\s'
1005s   atoms_frame = pd.read_csv(csv, sep="\s+", engine='python',  header=None)
1005s /usr/lib/python3/dist-packages/mdtraj/formats/netcdf.py:217: SyntaxWarning: invalid escape sequence '\g'
1005s   """Read data from a molecular dynamics trajectory in the AMBER NetCDF
1005s /usr/lib/python3/dist-packages/mdtraj/formats/netcdf.py:323: SyntaxWarning: invalid escape sequence '\g'
1005s   """Write one or more frames of a molecular dynamics trajectory to disk
1006s /usr/lib/python3/dist-packages/mdtraj/formats/prmtop.py:63: SyntaxWarning: invalid escape sequence '\.'
1006s   FORMAT_RE_PATTERN = re.compile("([0-9]+)([a-zA-Z]+)([0-9]+)\.?([0-9]*)")
1006s /usr/lib/python3/dist-packages/mdtraj/geometry/contact.py:44: SyntaxWarning: invalid escape sequence '\s'
1006s   """Compute the distance between pairs of residues in a trajectory.
1006s /usr/lib/python3/dist-packages/mdtraj/geometry/hbond.py:251: SyntaxWarning: invalid escape sequence '\c'
1006s   """Compute the Kabsch-Sander hydrogen bond energy between each pair
1006s /usr/lib/python3/dist-packages/mdtraj/geometry/internal.py:370: SyntaxWarning: invalid escape sequence '\p'
1006s   """Calculate the Wilson B matrix, which collects the derivatives of the
1006s /usr/lib/python3/dist-packages/mdtraj/geometry/shape.py:80: SyntaxWarning: invalid escape sequence '\l'
1006s   """Compute the asphericity of a trajectory.
1006s /usr/lib/python3/dist-packages/mdtraj/geometry/shape.py:105: SyntaxWarning: invalid escape sequence '\l'
1006s   """Compute the acylindricity of a trajectory.
1006s /usr/lib/python3/dist-packages/mdtraj/geometry/shape.py:130: SyntaxWarning: invalid escape sequence '\k'
1006s   """Compute the relative shape anisotropy of a trajectory.
1006s /usr/lib/python3/dist-packages/mdtraj/nmr/shift_wrappers.py:214: SyntaxWarning: invalid escape sequence '\s'
1006s   d = pd.read_table("./bb_details.dat", index_col=False, header=None, sep="\s+").drop([3], axis=1)
1006s /usr/lib/python3/dist-packages/mdtraj/nmr/shift_wrappers.py:292: SyntaxWarning: invalid escape sequence '\s'
1006s   d = pd.read_table("./trj%d_pred.tab" % i, names=names, header=None, sep="\s+", skiprows=lines_to_skip)
1006s /usr/lib/python3/dist-packages/mdtraj/testing/docscrape.py:305: SyntaxWarning: invalid escape sequence '\w'
1006s   if re.compile('^([\w., ]+=)?\s*[\w\.]+\(.*\)$').match(summary_str):
1006s /usr/lib/python3/dist-packages/mdtraj/testing/docscrape.py:345: SyntaxWarning: invalid escape sequence '\*'
1006s   return [self['Signature'].replace('*','\*')] + ['']
1006s /usr/lib/python3/dist-packages/mdtraj/testing/docscrape.py:464: SyntaxWarning: invalid escape sequence '\*'
1006s   argspec = argspec.replace('*','\*')
1006s /usr/lib/python3/dist-packages/mdtraj/testing/docscrape.py:482: SyntaxWarning: invalid escape sequence '\*'
1006s   signature = self['Signature'].replace('*', '\*')
1006s /usr/lib/python3/dist-packages/mdtraj/testing/docstrings.py:126: SyntaxWarning: invalid escape sequence '\d'
1006s   m = re.search('takes at most (\d+) positional arguments', str(e))
1006s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
1006s Setting up python3-fonttools (4.46.0-1) ...
1006s Setting up python3-matplotlib (3.6.3-1ubuntu3) ...
1008s Setting up autopkgtest-satdep (0) ...
1008s Processing triggers for libc-bin (2.39-0ubuntu6) ...
1008s Processing triggers for systemd (255.2-3ubuntu2) ...
1008s Processing triggers for man-db (2.12.0-3) ...
1015s (Reading database ... 91198 files and directories currently installed.)
1015s Removing autopkgtest-satdep (0) ...
1016s autopkgtest [15:55:18]: test command1: pytest-3 -k 'not nmr.ipynb and not test_image_molecules'
1016s autopkgtest [15:55:18]: test command1: [-----------------------
1016s ============================= test session starts ==============================
1016s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3
1016s cachedir: .pytest_cache
1016s rootdir: /tmp/autopkgtest.DDZHGr/build.buw/src
1016s configfile: pytest.ini
1016s testpaths: tests, examples
1019s collecting ... collected 1221 items / 2 deselected / 1219 selected
1019s 
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1019s tests/test_alignment.py::test_rmsd_nonzero PASSED                        [  0%]
1019s tests/test_alignment.py::test_transform PASSED                           [  0%]
1019s tests/test_alignment.py::test_transform2 PASSED                          [  0%]
1019s tests/test_angles.py::test_angle_pbc_0 PASSED                            [  0%]
1019s tests/test_angles.py::test_generator PASSED                              [  0%]
1019s tests/test_arc.py::test_read_0 PASSED                                    [  0%]
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1021s tests/test_crd.py::test_prmtop_with_overflow_mdcrd PASSED                [  2%]
1021s tests/test_dcd.py::test_read PASSED                                      [  2%]
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1021s tests/test_dcd.py::test_read_stride PASSED                               [  2%]
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1022s tests/test_dihedral.py::test_compute_phi PASSED                          [  4%]
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1029s tests/test_distance.py::test_distance_nan PASSED                         [  5%]
1029s tests/test_distance.py::test_closest_contact_nan_pos PASSED              [  6%]
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1030s tests/test_distance.py::test_distances_t_at_0 PASSED                     [  6%]
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1030s tests/test_docstrings.py::test_docstrings[mdtraj._lprmsd] PASSED         [  6%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.core.selection] PASSED  [  6%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.amberrst] PASSED [  7%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.binpos] PASSED  [  7%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.hoomdxml] PASSED [  7%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.lammpstrj] PASSED [  7%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.mdcrd] PASSED   [  7%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.mol2] PASSED    [  8%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.netcdf] PASSED  [  8%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.openmmxml] PASSED [  8%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.pdb.pdbfile] PASSED [  8%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.formats.xyzfile] PASSED [  9%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.alignment] PASSED [  9%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.angle] PASSED  [  9%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.dihedral] PASSED [  9%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.hbond] PASSED  [  9%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.order] PASSED  [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.rdf] PASSED    [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.rg] PASSED     [ 10%]
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1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.shape] PASSED  [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.geometry.thermodynamic_properties] PASSED [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.io] SKIPPED (Skip c...) [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.nmr.scalar_couplings] PASSED [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.nmr.shift_wrappers] PASSED [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.reporters.basereporter] PASSED [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.reporters.dcdreporter] PASSED [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.reporters.hdf5reporter] PASSED [ 10%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.reporters.netcdfreporter] PASSED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.reporters.xtcreporter] PASSED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.scripts.mdconvert] SKIPPED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.scripts.mdinspect] SKIPPED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.testing.docscrape] SKIPPED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.testing.docstrings] PASSED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.testing.testing] PASSED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.contextmanagers] PASSED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.delay_import] PASSED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.rotation] PASSED  [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.singleton] PASSED [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.six] SKIPPED      [ 11%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.basedimension] PASSED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.baseunit] SKIPPED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.constants] PASSED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.mymatrix] SKIPPED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.prefix] SKIPPED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.quantity] SKIPPED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.standard_dimensions] PASSED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.unit] SKIPPED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.unit_definitions] SKIPPED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.unit_math] SKIPPED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unit.unit_operators] SKIPPED [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.unitcell] PASSED  [ 12%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.validation] PASSED [ 13%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.utils.zipped] PASSED    [ 13%]
1031s tests/test_docstrings.py::test_docstrings[mdtraj.version] PASSED         [ 13%]
1031s tests/test_drid.py::test_drid_1 PASSED                                   [ 13%]
1031s tests/test_drid.py::test_drid_2 PASSED                                   [ 13%]
1031s tests/test_dssp.py::test_1 SKIPPED (This test requires mkdssp to be ...) [ 13%]
1031s tests/test_dssp.py::test_2 SKIPPED (This test requires mkdssp to be ...) [ 13%]
1031s tests/test_dssp.py::test_3 SKIPPED (This test requires mkdssp to be ...) [ 13%]
1031s tests/test_dssp.py::test_4 PASSED                                        [ 13%]
1031s tests/test_dssp.py::test_5 PASSED                                        [ 13%]
1031s tests/test_dssp.py::test_7 PASSED                                        [ 13%]
1031s tests/test_dtr.py::test_read PASSED                                      [ 13%]
1031s tests/test_dtr.py::test_read_1 PASSED                                    [ 14%]
1031s tests/test_dtr.py::test_read_2 PASSED                                    [ 14%]
1031s tests/test_dtr.py::test_read_3 PASSED                                    [ 14%]
1031s tests/test_dtr.py::test_read_stride PASSED                               [ 14%]
1031s tests/test_dtr.py::test_read_4 PASSED                                    [ 14%]
1031s tests/test_dtr.py::test_read_5 PASSED                                    [ 14%]
1031s tests/test_dtr.py::test_read_6 PASSED                                    [ 14%]
1031s tests/test_dtr.py::test_read_7 PASSED                                    [ 14%]
1031s tests/test_dtr.py::test_read_8 PASSED                                    [ 14%]
1032s tests/test_dtr.py::test_write_1 PASSED                                   [ 14%]
1033s tests/test_dtr.py::test_write_2 PASSED                                   [ 14%]
1033s tests/test_dtr.py::test_write_3 PASSED                                   [ 14%]
1033s tests/test_dtr.py::test_write_4 PASSED                                   [ 15%]
1033s tests/test_dtr.py::test_seek PASSED                                      [ 15%]
1033s tests/test_dtr.py::test_read_closed PASSED                               [ 15%]
1033s tests/test_dtr.py::test_tell PASSED                                      [ 15%]
1033s tests/test_element.py::test_immutable PASSED                             [ 15%]
1033s tests/test_element.py::test_element_0 PASSED                             [ 15%]
1033s tests/test_element.py::test_element_pickle PASSED                        [ 15%]
1033s tests/test_geometry.py::test_rg PASSED                                   [ 15%]
1033s tests/test_geometry.py::test_distances PASSED                            [ 15%]
1033s tests/test_geometry.py::test_center_of_mass PASSED                       [ 15%]
1033s tests/test_geometry.py::test_center_of_geometry PASSED                   [ 15%]
1033s tests/test_geometry.py::test_dihedral_indices PASSED                     [ 15%]
1034s tests/test_geometry.py::test_dihedral_index_offset_generation PASSED     [ 15%]
1034s tests/test_geometry.py::test_dihedral_0 PASSED                           [ 16%]
1034s tests/test_geometry.py::test_dihedral_1 PASSED                           [ 16%]
1034s tests/test_geometry.py::test_dihedral_triclinic PASSED                   [ 16%]
1034s tests/test_geometry.py::test_angle_0 PASSED                              [ 16%]
1034s tests/test_geometry.py::test_angle_periodic_0 PASSED                     [ 16%]
1034s tests/test_geometry.py::test_angle_triclinic_0 PASSED                    [ 16%]
1034s tests/test_geometry.py::test_angle_1 PASSED                              [ 16%]
1034s tests/test_geometry.py::test_dihedral_performance SKIPPED (Not doing...) [ 16%]
1034s tests/test_geometry.py::test_angle_performance SKIPPED (Not doing pe...) [ 16%]
1034s tests/test_geometry.py::test_angle_nan PASSED                            [ 16%]
1035s tests/test_geometry.py::test_angle_pbc PASSED                            [ 16%]
1038s tests/test_geometry.py::test_dihedral_pbc PASSED                         [ 16%]
1038s tests/test_geometry.py::test_dihedral_pbc_fails1 PASSED                  [ 17%]
1038s tests/test_geometry.py::test_dihedral_pbc_fails2 PASSED                  [ 17%]
1038s tests/test_geometry.py::test_angle_pbc_fails1 PASSED                     [ 17%]
1039s tests/test_geometry.py::test_no_indices PASSED                           [ 17%]
1039s tests/test_gro.py::test_read_write PASSED                                [ 17%]
1040s tests/test_gro.py::test_read_write_precision PASSED                      [ 17%]
1040s tests/test_gro.py::test_no_whitespace_gro PASSED                         [ 17%]
1040s tests/test_gro.py::test_load PASSED                                      [ 17%]
1040s tests/test_gro.py::test_load_with_given_top PASSED                       [ 17%]
1040s tests/test_gro.py::test_against_gmx PASSED                               [ 17%]
1040s tests/test_gsd.py::test_read SKIPPED (gsd module is not available)       [ 17%]
1040s tests/test_gsd.py::test_read_start SKIPPED (gsd module is not available) [ 17%]
1040s tests/test_gsd.py::test_read_frame SKIPPED (gsd module is not available) [ 18%]
1040s tests/test_gsd.py::test_read_stride SKIPPED (gsd module is not avail...) [ 18%]
1040s tests/test_gsd.py::test_read_variable_top_error SKIPPED (gsd module ...) [ 18%]
1040s tests/test_gsd.py::test_write SKIPPED (gsd module is not available)      [ 18%]
1040s tests/test_gsd.py::test_write_frame SKIPPED (gsd module is not avail...) [ 18%]
1041s tests/test_hbonds.py::test_hbonds PASSED                                 [ 18%]
1041s tests/test_hbonds.py::test_hbonds_against_dssp SKIPPED (This test re...) [ 18%]
1041s tests/test_hbonds.py::test_baker_hubbard_0 PASSED                        [ 18%]
1041s tests/test_hbonds.py::test_baker_hubbard_1 PASSED                        [ 18%]
1042s tests/test_hbonds.py::test_baker_hubbard_2 PASSED                        [ 18%]
1042s tests/test_hbonds.py::test_baker_hubbard_3 PASSED                        [ 18%]
1042s tests/test_hbonds.py::test_wernet_nilsson_0 PASSED                       [ 18%]
1042s tests/test_hbonds.py::test_wernet_nilsson_1 PASSED                       [ 19%]
1042s tests/test_hdf5.py::test_write_coordinates PASSED                        [ 19%]
1042s tests/test_hdf5.py::test_write_coordinates_reshape PASSED                [ 19%]
1042s tests/test_hdf5.py::test_write_multiple PASSED                           [ 19%]
1042s tests/test_hdf5.py::test_write_inconsistent PASSED                       [ 19%]
1042s tests/test_hdf5.py::test_write_inconsistent_2 PASSED                     [ 19%]
1042s tests/test_hdf5.py::test_write_units SKIPPED (requires openmm.units)     [ 19%]
1042s tests/test_hdf5.py::test_write_units2 PASSED                             [ 19%]
1042s tests/test_hdf5.py::test_write_units_mismatch SKIPPED (requires open...) [ 19%]
1042s tests/test_hdf5.py::test_topology PASSED                                 [ 19%]
1042s tests/test_hdf5.py::test_constraints PASSED                              [ 19%]
1042s tests/test_hdf5.py::test_constraints2 PASSED                             [ 19%]
1042s tests/test_hdf5.py::test_read_0 PASSED                                   [ 20%]
1042s tests/test_hdf5.py::test_read_1 SKIPPED (requires openmm.units)          [ 20%]
1042s tests/test_hdf5.py::test_read_slice_0 PASSED                             [ 20%]
1042s tests/test_hdf5.py::test_read_slice_1 PASSED                             [ 20%]
1042s tests/test_hdf5.py::test_read_slice_2 PASSED                             [ 20%]
1042s tests/test_hdf5.py::test_read_slice_3 PASSED                             [ 20%]
1042s tests/test_hdf5.py::test_do_overwrite PASSED                             [ 20%]
1043s tests/test_hdf5.py::test_vsite_elements PASSED                           [ 20%]
1043s tests/test_hdf5.py::test_dont_overwrite PASSED                           [ 20%]
1043s tests/test_hdf5.py::test_attributes PASSED                               [ 20%]
1043s tests/test_hdf5.py::test_append PASSED                                   [ 20%]
1045s tests/test_hoomdxml.py::test_load PASSED                                 [ 20%]
1045s tests/test_hoomdxml.py::test_load_no_chains PASSED                       [ 21%]
1045s tests/test_hoomdxml.py::test_load_no_ions PASSED                         [ 21%]
1045s tests/test_hoomdxml.py::test_correct_ordering PASSED                     [ 21%]
1045s tests/test_io.py::test_overwrite_1 PASSED                                [ 21%]
1045s tests/test_io.py::test_overwrite_2 PASSED                                [ 21%]
1045s tests/test_io.py::test_io::test_load_1 PASSED                            [ 21%]
1045s tests/test_io.py::test_io::test_load_2 PASSED                            [ 21%]
1045s tests/test_io.py::test_io::test_load_3 PASSED                            [ 21%]
1045s tests/test_io.py::test_io::test_save PASSED                              [ 21%]
1045s tests/test_io.py::test_io_int::test_load_1 PASSED                        [ 21%]
1045s tests/test_io.py::test_io_int::test_load_2 PASSED                        [ 21%]
1045s tests/test_io.py::test_io_int::test_load_3 PASSED                        [ 21%]
1045s tests/test_io.py::test_io_int::test_save PASSED                          [ 21%]
1045s tests/test_io.py::test_groups PASSED                                     [ 22%]
1045s tests/test_lammpstrj.py::test_read_0 PASSED                              [ 22%]
1045s tests/test_lammpstrj.py::test_read_1 PASSED                              [ 22%]
1045s tests/test_lammpstrj.py::test_read_write_0 PASSED                        [ 22%]
1045s tests/test_lammpstrj.py::test_mdwrite PASSED                             [ 22%]
1045s tests/test_lammpstrj.py::test_multiread PASSED                           [ 22%]
1045s tests/test_lammpstrj.py::test_seek PASSED                                [ 22%]
1045s tests/test_lammpstrj.py::test_custom PASSED                              [ 22%]
1045s tests/test_lh5.py::test_write_coordinates PASSED                         [ 22%]
1045s tests/test_lh5.py::test_write_coordinates_reshape PASSED                 [ 22%]
1045s tests/test_lh5.py::test_write_multiple PASSED                            [ 22%]
1045s tests/test_lh5.py::test_topology PASSED                                  [ 22%]
1045s tests/test_lh5.py::test_read_slice_0 PASSED                              [ 23%]
1046s tests/test_lh5.py::test_vsite_elements PASSED                            [ 23%]
1046s tests/test_lh5.py::test_do_overwrite_0 PASSED                            [ 23%]
1046s tests/test_lh5.py::test_do_overwrite_1 PASSED                            [ 23%]
1046s tests/test_load.py::test_load_single PASSED                              [ 23%]
1046s tests/test_load.py::test_load_single_list PASSED                         [ 23%]
1047s tests/test_load.py::test_load_many_list PASSED                           [ 23%]
1047s tests/test_load.py::test_load_atom_indices_multiple_files PASSED         [ 23%]
1047s tests/test_lprmsd.py::test_munkres_0 PASSED                              [ 23%]
1047s tests/test_lprmsd.py::test_lprmsd_null PASSED                            [ 23%]
1047s tests/test_lprmsd.py::test_lprmsd_0 PASSED                               [ 23%]
1047s tests/test_lprmsd.py::test_lprmsd_1 PASSED                               [ 23%]
1047s tests/test_lprmsd.py::test_lprmsd_2 PASSED                               [ 24%]
1047s tests/test_lprmsd.py::test_lprmsd_3 PASSED                               [ 24%]
1048s tests/test_lprmsd.py::test_lprmsd_4 PASSED                               [ 24%]
1048s tests/test_lprmsd.py::test_lprmsd_5 PASSED                               [ 24%]
1049s tests/test_mdconvert.py::test_index PASSED                               [ 24%]
1050s tests/test_mdconvert.py::test_slice PASSED                               [ 24%]
1069s tests/test_mdconvert.py::test_pairwise[from-xtc] PASSED                  [ 24%]
1090s tests/test_mdconvert.py::test_pairwise[from-dcd] PASSED                  [ 24%]
1110s tests/test_mdconvert.py::test_pairwise[from-binpos] PASSED               [ 24%]
1129s tests/test_mdconvert.py::test_pairwise[from-trr] PASSED                  [ 24%]
1146s tests/test_mdconvert.py::test_pairwise[from-nc] PASSED                   [ 24%]
1165s tests/test_mdconvert.py::test_pairwise[from-pdb] PASSED                  [ 24%]
1190s tests/test_mdconvert.py::test_pairwise[from-h5] PASSED                   [ 25%]
1213s tests/test_mdconvert.py::test_pairwise[from-lh5] PASSED                  [ 25%]
1233s tests/test_mdconvert.py::test_pairwise[from-netcdf] PASSED               [ 25%]
1234s tests/test_mdconvert.py::test_mdconvert_alanine PASSED                   [ 25%]
1234s tests/test_mdcrd.py::test_read_0 PASSED                                  [ 25%]
1234s tests/test_mdcrd.py::test_read_1 PASSED                                  [ 25%]
1234s tests/test_mdcrd.py::test_read_write_0 PASSED                            [ 25%]
1234s tests/test_mdcrd.py::test_read_write_1 PASSED                            [ 25%]
1234s tests/test_mdcrd.py::test_read_write_2 PASSED                            [ 25%]
1234s tests/test_mdcrd.py::test_multiread PASSED                               [ 25%]
1234s tests/test_mdcrd.py::test_seek PASSED                                    [ 25%]
1234s tests/test_mdcrd.py::test_atom_indices_0 PASSED                          [ 25%]
1234s tests/test_mdcrd.py::test_atom_indices_1 PASSED                          [ 26%]
1234s tests/test_mol2.py::test_load_mol2 PASSED                                [ 26%]
1234s tests/test_mol2.py::test_load_freesolv_gaffmol2_vs_sybylmol2_vs_obabelpdb SKIPPED [ 26%]
1234s tests/test_mol2.py::test_mol2_dataframe PASSED                           [ 26%]
1234s tests/test_mol2.py::test_mol2_dataframe_status PASSED                    [ 26%]
1234s tests/test_mol2.py::test_mol2_warnings PASSED                            [ 26%]
1234s tests/test_mol2.py::test_mol2_status_bits PASSED                         [ 26%]
1234s tests/test_mol2.py::test_mol2_without_bonds PASSED                       [ 26%]
1234s tests/test_mol2.py::test_mol2_element_name PASSED                        [ 26%]
1234s tests/test_mol2.py::test_load_all_mol2[li.mol2] PASSED                   [ 26%]
1234s tests/test_mol2.py::test_load_all_mol2[lysozyme-ligand-tripos.mol2] PASSED [ 26%]
1234s tests/test_mol2.py::test_load_all_mol2[imatinib.mol2] PASSED             [ 26%]
1234s tests/test_mol2.py::test_load_all_mol2[status-bits.mol2] PASSED          [ 26%]
1234s tests/test_mol2.py::test_load_all_mol2[adp.mol2] PASSED                  [ 27%]
1234s tests/test_mol2.py::test_load_all_mol2[water_acn.mol2] PASSED            [ 27%]
1234s tests/test_mol2.py::test_mol2_n_residues PASSED                          [ 27%]
1234s tests/test_neighborlist.py::test_nonperiodic PASSED                      [ 27%]
1234s tests/test_neighborlist.py::test_periodic PASSED                         [ 27%]
1236s tests/test_neighborlist.py::test_triclinic PASSED                        [ 27%]
1236s tests/test_neighbors.py::test_compute_neighbors_1 PASSED                 [ 27%]
1236s tests/test_neighbors.py::test_compute_neighbors_2 PASSED                 [ 27%]
1237s tests/test_neighbors.py::test_compute_neighbors_3 PASSED                 [ 27%]
1237s tests/test_netcdf.py::test_read_after_close PASSED                       [ 27%]
1237s tests/test_netcdf.py::test_shape PASSED                                  [ 27%]
1237s tests/test_netcdf.py::test_read_chunk_1 PASSED                           [ 27%]
1237s tests/test_netcdf.py::test_read_chunk_2 PASSED                           [ 28%]
1237s tests/test_netcdf.py::test_read_chunk_3 PASSED                           [ 28%]
1237s tests/test_netcdf.py::test_read_write_1 PASSED                           [ 28%]
1237s tests/test_netcdf.py::test_read_write_2 PASSED                           [ 28%]
1237s tests/test_netcdf.py::test_ragged_1 PASSED                               [ 28%]
1237s tests/test_netcdf.py::test_ragged_2 PASSED                               [ 28%]
1237s tests/test_netcdf.py::test_read_write_25 PASSED                          [ 28%]
1237s tests/test_netcdf.py::test_write_3 PASSED                                [ 28%]
1237s tests/test_netcdf.py::test_n_atoms PASSED                                [ 28%]
1237s tests/test_netcdf.py::test_do_overwrite PASSED                           [ 28%]
1237s tests/test_netcdf.py::test_trajectory_save_load PASSED                   [ 28%]
1237s tests/test_netcdf.py::test_cpptraj SKIPPED (This test requires cpptr...) [ 28%]
1237s tests/test_nmr.py::test_spartaplus SKIPPED (SPARTA+ binary not found)    [ 29%]
1237s tests/test_nmr.py::test_ppm SKIPPED (PPM binary not found)               [ 29%]
1237s tests/test_nmr.py::test_shiftx2 SKIPPED (SHIFTX2 binary not found or...) [ 29%]
1237s tests/test_nmr.py::test_2_scalar_couplings PASSED                        [ 29%]
1237s tests/test_nmr.py::test_3_scalar_couplings PASSED                        [ 29%]
1237s tests/test_order.py::test_nematic_order PASSED                           [ 29%]
1237s tests/test_order.py::test_director PASSED                                [ 29%]
1237s tests/test_order.py::test_inertia PASSED                                 [ 29%]
1237s tests/test_order.py::test_nematic_order_args PASSED                      [ 29%]
1237s tests/test_order.py::test_order_from_traj PASSED                         [ 29%]
1238s tests/test_order.py::test_directors_angle_from_traj PASSED               [ 29%]
1238s tests/test_pdb.py::test_pdbread PASSED                                   [ 29%]
1238s tests/test_pdb.py::test_pdbread_with_input_top PASSED                    [ 30%]
1238s tests/test_pdb.py::test_pdbwrite PASSED                                  [ 30%]
1238s tests/test_pdb.py::test_load_multiframe PASSED                           [ 30%]
1238s tests/test_pdb.py::test_4ZUO PASSED                                      [ 30%]
1238s tests/test_pdb.py::test_2EQQ_0 PASSED                                    [ 30%]
1240s tests/test_pdb.py::test_1vii_solvated_with_ligand PASSED                 [ 30%]
1240s tests/test_pdb.py::test_write_large PASSED                               [ 30%]
1240s tests/test_pdb.py::test_write_large_2 PASSED                             [ 30%]
1240s tests/test_pdb.py::test_pdbstructure_0 PASSED                            [ 30%]
1240s tests/test_pdb.py::test_pdbstructure_1 PASSED                            [ 30%]
1240s tests/test_pdb.py::test_pdbstructure_2 PASSED                            [ 30%]
1240s tests/test_pdb.py::test_pdbstructure_3 PASSED                            [ 30%]
1244s tests/test_pdb.py::test_pdb_from_url PASSED                              [ 31%]
1245s tests/test_pdb.py::test_3nch_conect PASSED                               [ 31%]
1247s tests/test_pdb.py::test_3nch_serial_resSeq PASSED                        [ 31%]
1247s tests/test_pdb.py::test_1ncw PASSED                                      [ 31%]
1250s tests/test_pdb.py::test_1vii_url_and_gz PASSED                           [ 31%]
1250s tests/test_pdb.py::test_segment_id PASSED                                [ 31%]
1250s tests/test_pdb.py::test_bfactors PASSED                                  [ 31%]
1254s tests/test_pdb.py::test_hex PASSED                                       [ 31%]
1254s tests/test_pdb.py::test_dummy_pdb_box_detection PASSED                   [ 31%]
1254s tests/test_pdb.py::test_multichain_load_cycle PASSED                     [ 31%]
1254s tests/test_pdb.py::test_load_pdb_input_top PASSED                        [ 31%]
1254s tests/test_pdbx.py::test_convert SKIPPED (test_pdbx.py needs OpenMM.)    [ 31%]
1254s tests/test_prmtop.py::test_load_prmtop PASSED                            [ 31%]
1254s tests/test_prmtop.py::test_load_binpos_w_prmtop PASSED                   [ 32%]
1254s tests/test_prmtop.py::test_load_chamber_prmtop PASSED                    [ 32%]
1254s tests/test_psf.py::test_load_psf PASSED                                  [ 32%]
1258s tests/test_psf.py::test_multichain_psf PASSED                            [ 32%]
1258s tests/test_psf.py::test_load_mdcrd_with_psf PASSED                       [ 32%]
1258s tests/test_psf.py::test_against_vmd[1vii.pdb] SKIPPED (This test req...) [ 32%]
1258s tests/test_psf.py::test_against_vmd[2EQQ.pdb] SKIPPED (This test req...) [ 32%]
1258s tests/test_quaternion.py::test_quaternion_0 PASSED                       [ 32%]
1258s tests/test_quaternion.py::test_quaternion_1 PASSED                       [ 32%]
1258s tests/test_quaternion.py::test_quaternion_2 PASSED                       [ 32%]
1262s tests/test_rdf.py::test_rdf_norm PASSED                                  [ 32%]
1262s tests/test_rdf.py::test_compare_rdf_to_gromacs SKIPPED (Binning does...) [ 32%]
1262s tests/test_rdf.py::test_rdf_t[True-True] PASSED                          [ 33%]
1267s tests/test_rdf.py::test_rdf_t[True-False] PASSED                         [ 33%]
1267s tests/test_rdf.py::test_rdf_t[False-True] PASSED                         [ 33%]
1268s tests/test_rdf.py::test_rdf_t[False-False] PASSED                        [ 33%]
1268s tests/test_rdf.py::test_rdf_t_norm[0] PASSED                             [ 33%]
1269s tests/test_rdf.py::test_rdf_t_norm[2] PASSED                             [ 33%]
1269s tests/test_rdf.py::test_rdf_t_norm[4] PASSED                             [ 33%]
1269s tests/test_rdf.py::test_compare_rdf_t_at_0[True-True] PASSED             [ 33%]
1271s tests/test_rdf.py::test_compare_rdf_t_at_0[True-False] PASSED            [ 33%]
1271s tests/test_rdf.py::test_compare_rdf_t_at_0[False-True] PASSED            [ 33%]
1271s tests/test_rdf.py::test_compare_rdf_t_at_0[False-False] PASSED           [ 33%]
1272s tests/test_rdf.py::test_amber_rdf_t[True-True] PASSED                    [ 33%]
1272s tests/test_rdf.py::test_amber_rdf_t[True-False] PASSED                   [ 34%]
1272s tests/test_rdf.py::test_amber_rdf_t[False-True] PASSED                   [ 34%]
1272s tests/test_rdf.py::test_amber_rdf_t[False-False] PASSED                  [ 34%]
1272s tests/test_rdf.py::test_compare_gromacs_rdf_t SKIPPED (Binning does ...) [ 34%]
1272s tests/test_rdf.py::test_compare_rdf_t_master PASSED                      [ 34%]
1273s tests/test_rdf.py::test_compare_n_concurrent_pairs PASSED                [ 34%]
1273s tests/test_reporter.py::test_reporter SKIPPED (test_reporter.py need...) [ 34%]
1273s tests/test_reporter.py::test_reporter_subset SKIPPED (test_reporter....) [ 34%]
1273s tests/test_reporter.py::test_xtc_reporter_append SKIPPED (test_repor...) [ 34%]
1273s tests/test_restart.py::test_read_after_close PASSED                      [ 34%]
1273s tests/test_restart.py::test_shape PASSED                                 [ 34%]
1273s tests/test_restart.py::test_shape_2 PASSED                               [ 34%]
1273s tests/test_restart.py::test_read_write_1 PASSED                          [ 35%]
1273s tests/test_restart.py::test_read_write_2 PASSED                          [ 35%]
1273s tests/test_restart.py::test_read_write_3 PASSED                          [ 35%]
1273s tests/test_restart.py::test_read_write_4 PASSED                          [ 35%]
1273s tests/test_rmsd.py::test_trajectory_rmsd PASSED                          [ 35%]
1273s tests/test_rmsd.py::test_precentered_1 PASSED                            [ 35%]
1273s tests/test_rmsd.py::test_precentered_2 PASSED                            [ 35%]
1273s tests/test_rmsd.py::test_superpose_0 PASSED                              [ 35%]
1273s tests/test_rmsd.py::test_superpose_1 PASSED                              [ 35%]
1273s tests/test_rmsd.py::test_superpose_2 PASSED                              [ 35%]
1273s tests/test_rmsd.py::test_superpose_refinds PASSED                        [ 35%]
1274s tests/test_rmsd.py::test_rmsd_atom_indices PASSED                        [ 35%]
1274s tests/test_rmsd.py::test_rmsd_ref_ainds PASSED                           [ 36%]
1274s tests/test_rmsd.py::test_average_structure PASSED                        [ 36%]
1274s tests/test_rmsd.py::test_trajectory_rmsf PASSED                          [ 36%]
1274s tests/test_rmsd.py::test_trajectory_rmsf_aligned PASSED                  [ 36%]
1274s tests/test_rmsd.py::test_rmsd_atom_indices_vs_ref_indices PASSED         [ 36%]
1274s tests/test_rmsd_memmap.py::test_1 PASSED                                 [ 36%]
1274s tests/test_rmsd_memmap.py::test_2 PASSED                                 [ 36%]
1274s tests/test_sasa.py::test_sasa_0 PASSED                                   [ 36%]
1274s tests/test_sasa.py::test_sasa_1 PASSED                                   [ 36%]
1274s tests/test_sasa.py::test_sasa_2 PASSED                                   [ 36%]
1275s tests/test_sasa.py::test_sasa_3 PASSED                                   [ 36%]
1275s tests/test_sasa.py::test_sasa_4 PASSED                                   [ 36%]
1275s tests/test_sasa.py::test_sasa_5 PASSED                                   [ 36%]
1275s tests/test_selection.py::test_range PASSED                               [ 37%]
1275s tests/test_selection.py::test_unary_2 PASSED                             [ 37%]
1275s tests/test_selection.py::test_unary_3 PASSED                             [ 37%]
1275s tests/test_selection.py::test_binary_1 PASSED                            [ 37%]
1275s tests/test_selection.py::test_binary_2 PASSED                            [ 37%]
1275s tests/test_selection.py::test_simple PASSED                              [ 37%]
1275s tests/test_selection.py::test_alias PASSED                               [ 37%]
1276s tests/test_selection.py::test_unary_1 PASSED                             [ 37%]
1276s tests/test_selection.py::test_binary_selection_operator PASSED           [ 37%]
1276s tests/test_selection.py::test_raises PASSED                              [ 37%]
1276s tests/test_selection.py::test_raises2 PASSED                             [ 37%]
1276s tests/test_selection.py::test_bool PASSED                                [ 37%]
1276s tests/test_selection.py::test_nested_bool PASSED                         [ 38%]
1276s tests/test_selection.py::test_values PASSED                              [ 38%]
1276s tests/test_selection.py::test_element PASSED                             [ 38%]
1276s tests/test_selection.py::test_not PASSED                                 [ 38%]
1276s tests/test_selection.py::test_re PASSED                                  [ 38%]
1276s tests/test_selection.py::test_quotes PASSED                              [ 38%]
1276s tests/test_selection.py::test_top PASSED                                 [ 38%]
1276s tests/test_selection.py::test_top_2 PASSED                               [ 38%]
1276s tests/test_selection.py::test_backbone PASSED                            [ 38%]
1277s tests/test_selection.py::test_sidechain PASSED                           [ 38%]
1277s tests/test_selection.py::test_literal PASSED                             [ 38%]
1277s tests/test_selection.py::test_in PASSED                                  [ 38%]
1277s tests/test_shape.py::test_gyration PASSED                                [ 39%]
1277s tests/test_shape.py::test_principal_moments PASSED                       [ 39%]
1278s tests/test_shape.py::test_asphericity PASSED                             [ 39%]
1278s tests/test_shape.py::test_shape_metrics PASSED                           [ 39%]
1278s tests/test_thermodynamic_properties.py::test_volume PASSED               [ 39%]
1278s tests/test_thermodynamic_properties.py::test_density PASSED              [ 39%]
1278s tests/test_thermodynamic_properties.py::test_dipole_moments PASSED       [ 39%]
1278s tests/test_thermodynamic_properties.py::test_static_dielectric PASSED    [ 39%]
1278s tests/test_thermodynamic_properties.py::test_kappa PASSED                [ 39%]
1278s tests/test_thermodynamic_properties.py::test_alpha SKIPPED (Thermal ...) [ 39%]
1278s tests/test_tng.py::test_load_trajectory PASSED                           [ 39%]
1278s tests/test_tng.py::test_load_topology SKIPPED (Fails on macOS + Pyth...) [ 39%]
1278s tests/test_tng.py::test_write PASSED                                     [ 40%]
1278s tests/test_topology.py::test_topology_openmm SKIPPED (needs OpenMM)      [ 40%]
1278s tests/test_topology.py::test_topology_openmm_boxes SKIPPED (needs Op...) [ 40%]
1278s tests/test_topology.py::test_topology_pandas PASSED                      [ 40%]
1279s tests/test_topology.py::test_topology_pandas_TIP4PEW PASSED              [ 40%]
1279s tests/test_topology.py::test_topology_pandas_2residues_same_resSeq PASSED [ 40%]
1279s tests/test_topology.py::test_topology_numbers PASSED                     [ 40%]
1279s tests/test_topology.py::test_topology_unique_elements_bpti PASSED        [ 40%]
1279s tests/test_topology.py::test_chain PASSED                                [ 40%]
1279s tests/test_topology.py::test_residue PASSED                              [ 40%]
1279s tests/test_topology.py::test_segment_id PASSED                           [ 40%]
1279s tests/test_topology.py::test_nonconsective_resSeq PASSED                 [ 40%]
1279s tests/test_topology.py::test_pickle PASSED                               [ 41%]
1279s tests/test_topology.py::test_atoms_by_name PASSED                        [ 41%]
1279s tests/test_topology.py::test_select_atom_indices PASSED                  [ 41%]
1279s tests/test_topology.py::test_top_dataframe_openmm_roundtrip SKIPPED      [ 41%]
1280s tests/test_topology.py::test_n_bonds PASSED                              [ 41%]
1280s tests/test_topology.py::test_load_unknown_topology PASSED                [ 41%]
1280s tests/test_topology.py::test_unique_pairs PASSED                         [ 41%]
1280s tests/test_topology.py::test_select_pairs PASSED                         [ 41%]
1281s tests/test_topology.py::test_to_fasta PASSED                             [ 41%]
1281s tests/test_topology.py::test_subset PASSED                               [ 41%]
1281s tests/test_topology.py::test_subset_re_index_residues PASSED             [ 41%]
1281s tests/test_topology.py::test_molecules PASSED                            [ 41%]
1281s tests/test_topology.py::test_copy_and_hash PASSED                        [ 42%]
1281s tests/test_topology.py::test_topology_sliced_residue_indices PASSED      [ 42%]
1282s tests/test_topology.py::test_topology_join PASSED                        [ 42%]
1282s tests/test_topology.py::test_topology_join_keep_resSeq PASSED            [ 42%]
1282s tests/test_trajectory.py::test_mismatch PASSED                           [ 42%]
1282s tests/test_trajectory.py::test_box PASSED                                [ 42%]
1282s tests/test_trajectory.py::test_load_pdb_box PASSED                       [ 42%]
1282s tests/test_trajectory.py::test_load_pdb_gz PASSED                        [ 42%]
1282s tests/test_trajectory.py::test_box_load_save[nc] PASSED                  [ 42%]
1282s tests/test_trajectory.py::test_box_load_save[h5] PASSED                  [ 42%]
1282s tests/test_trajectory.py::test_box_load_save[xtc] PASSED                 [ 42%]
1282s tests/test_trajectory.py::test_box_load_save[trr] PASSED                 [ 42%]
1282s tests/test_trajectory.py::test_box_load_save[dcd] PASSED                 [ 42%]
1282s tests/test_trajectory.py::test_box_load_save[mdcrd] PASSED               [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[binpos] SKIPPED (binpos...) [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[dtr] PASSED                 [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[xyz] SKIPPED (xyz does ...) [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[xyz.gz] SKIPPED (xyz.gz...) [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[lammpstrj] PASSED           [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[tng] PASSED                 [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[lh5] SKIPPED (lh5 does ...) [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[pdb] SKIPPED (pdb does ...) [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[pdb.gz] SKIPPED (pdb.gz...) [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[ncrst] PASSED               [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[rst7] PASSED                [ 43%]
1282s tests/test_trajectory.py::test_box_load_save[gro] PASSED                 [ 44%]
1282s tests/test_trajectory.py::test_slice PASSED                              [ 44%]
1282s tests/test_trajectory.py::test_slice2 PASSED                             [ 44%]
1282s tests/test_trajectory.py::test_read_path[nc] PASSED                      [ 44%]
1282s tests/test_trajectory.py::test_read_path[h5] PASSED                      [ 44%]
1282s tests/test_trajectory.py::test_read_path[xtc] PASSED                     [ 44%]
1282s tests/test_trajectory.py::test_read_path[trr] PASSED                     [ 44%]
1282s tests/test_trajectory.py::test_read_path[dcd] PASSED                     [ 44%]
1282s tests/test_trajectory.py::test_read_path[mdcrd] PASSED                   [ 44%]
1282s tests/test_trajectory.py::test_read_path[binpos] PASSED                  [ 44%]
1282s tests/test_trajectory.py::test_read_path[dtr] PASSED                     [ 44%]
1282s tests/test_trajectory.py::test_read_path[xyz] PASSED                     [ 44%]
1283s tests/test_trajectory.py::test_read_path[xyz.gz] PASSED                  [ 45%]
1283s tests/test_trajectory.py::test_read_path[lammpstrj] PASSED               [ 45%]
1283s tests/test_trajectory.py::test_read_path[tng] PASSED                     [ 45%]
1283s tests/test_trajectory.py::test_read_path[lh5] PASSED                     [ 45%]
1283s tests/test_trajectory.py::test_read_path[pdb] PASSED                     [ 45%]
1283s tests/test_trajectory.py::test_read_path[pdb.gz] PASSED                  [ 45%]
1283s tests/test_trajectory.py::test_read_path[ncrst] XFAIL (These referen...) [ 45%]
1283s tests/test_trajectory.py::test_read_path[rst7] XFAIL (These referenc...) [ 45%]
1283s tests/test_trajectory.py::test_read_path[gro] PASSED                     [ 45%]
1283s tests/test_trajectory.py::test_write_path[nc] PASSED                     [ 45%]
1283s tests/test_trajectory.py::test_write_path[h5] PASSED                     [ 45%]
1283s tests/test_trajectory.py::test_write_path[xtc] PASSED                    [ 45%]
1283s tests/test_trajectory.py::test_write_path[trr] PASSED                    [ 46%]
1283s tests/test_trajectory.py::test_write_path[dcd] PASSED                    [ 46%]
1283s tests/test_trajectory.py::test_write_path[mdcrd] SKIPPED (mdcrd can ...) [ 46%]
1283s tests/test_trajectory.py::test_write_path[binpos] PASSED                 [ 46%]
1283s tests/test_trajectory.py::test_write_path[dtr] PASSED                    [ 46%]
1283s tests/test_trajectory.py::test_write_path[xyz] PASSED                    [ 46%]
1283s tests/test_trajectory.py::test_write_path[xyz.gz] PASSED                 [ 46%]
1283s tests/test_trajectory.py::test_write_path[lammpstrj] PASSED              [ 46%]
1283s tests/test_trajectory.py::test_write_path[tng] PASSED                    [ 46%]
1283s tests/test_trajectory.py::test_write_path[lh5] PASSED                    [ 46%]
1283s tests/test_trajectory.py::test_write_path[pdb] PASSED                    [ 46%]
1284s tests/test_trajectory.py::test_write_path[pdb.gz] PASSED                 [ 46%]
1284s tests/test_trajectory.py::test_write_path[ncrst] SKIPPED (ncrst can ...) [ 47%]
1284s tests/test_trajectory.py::test_write_path[rst7] SKIPPED (rst7 can on...) [ 47%]
1284s tests/test_trajectory.py::test_write_path[gro] PASSED                    [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-nc] PASSED                  [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-h5] PASSED                  [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-xtc] PASSED                 [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-trr] PASSED                 [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-dcd] PASSED                 [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-mdcrd] SKIPPED (mdcrd c...) [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-binpos] PASSED              [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-dtr] PASSED                 [ 47%]
1284s tests/test_trajectory.py::test_read_write[nc-xyz] PASSED                 [ 47%]
1285s tests/test_trajectory.py::test_read_write[nc-xyz.gz] PASSED              [ 47%]
1285s tests/test_trajectory.py::test_read_write[nc-lammpstrj] PASSED           [ 48%]
1285s tests/test_trajectory.py::test_read_write[nc-tng] PASSED                 [ 48%]
1285s tests/test_trajectory.py::test_read_write[nc-lh5] PASSED                 [ 48%]
1285s tests/test_trajectory.py::test_read_write[nc-pdb] PASSED                 [ 48%]
1286s tests/test_trajectory.py::test_read_write[nc-pdb.gz] PASSED              [ 48%]
1286s tests/test_trajectory.py::test_read_write[nc-ncrst] SKIPPED (ncrst c...) [ 48%]
1286s tests/test_trajectory.py::test_read_write[nc-rst7] SKIPPED (rst7 can...) [ 48%]
1286s tests/test_trajectory.py::test_read_write[nc-gro] PASSED                 [ 48%]
1286s tests/test_trajectory.py::test_read_write[h5-nc] PASSED                  [ 48%]
1286s tests/test_trajectory.py::test_read_write[h5-h5] PASSED                  [ 48%]
1286s tests/test_trajectory.py::test_read_write[h5-xtc] PASSED                 [ 48%]
1286s tests/test_trajectory.py::test_read_write[h5-trr] PASSED                 [ 48%]
1286s tests/test_trajectory.py::test_read_write[h5-dcd] PASSED                 [ 49%]
1286s tests/test_trajectory.py::test_read_write[h5-mdcrd] SKIPPED (mdcrd c...) [ 49%]
1286s tests/test_trajectory.py::test_read_write[h5-binpos] PASSED              [ 49%]
1287s tests/test_trajectory.py::test_read_write[h5-dtr] PASSED                 [ 49%]
1287s tests/test_trajectory.py::test_read_write[h5-xyz] PASSED                 [ 49%]
1287s tests/test_trajectory.py::test_read_write[h5-xyz.gz] PASSED              [ 49%]
1287s tests/test_trajectory.py::test_read_write[h5-lammpstrj] PASSED           [ 49%]
1287s tests/test_trajectory.py::test_read_write[h5-tng] PASSED                 [ 49%]
1287s tests/test_trajectory.py::test_read_write[h5-lh5] PASSED                 [ 49%]
1287s tests/test_trajectory.py::test_read_write[h5-pdb] PASSED                 [ 49%]
1288s tests/test_trajectory.py::test_read_write[h5-pdb.gz] PASSED              [ 49%]
1288s tests/test_trajectory.py::test_read_write[h5-ncrst] SKIPPED (ncrst c...) [ 49%]
1288s tests/test_trajectory.py::test_read_write[h5-rst7] SKIPPED (rst7 can...) [ 50%]
1288s tests/test_trajectory.py::test_read_write[h5-gro] PASSED                 [ 50%]
1288s tests/test_trajectory.py::test_read_write[xtc-nc] PASSED                 [ 50%]
1288s tests/test_trajectory.py::test_read_write[xtc-h5] PASSED                 [ 50%]
1288s tests/test_trajectory.py::test_read_write[xtc-xtc] PASSED                [ 50%]
1288s tests/test_trajectory.py::test_read_write[xtc-trr] PASSED                [ 50%]
1288s tests/test_trajectory.py::test_read_write[xtc-dcd] PASSED                [ 50%]
1288s tests/test_trajectory.py::test_read_write[xtc-mdcrd] SKIPPED (mdcrd ...) [ 50%]
1288s tests/test_trajectory.py::test_read_write[xtc-binpos] PASSED             [ 50%]
1289s tests/test_trajectory.py::test_read_write[xtc-dtr] PASSED                [ 50%]
1289s tests/test_trajectory.py::test_read_write[xtc-xyz] PASSED                [ 50%]
1289s tests/test_trajectory.py::test_read_write[xtc-xyz.gz] PASSED             [ 50%]
1289s tests/test_trajectory.py::test_read_write[xtc-lammpstrj] PASSED          [ 51%]
1289s tests/test_trajectory.py::test_read_write[xtc-tng] PASSED                [ 51%]
1289s tests/test_trajectory.py::test_read_write[xtc-lh5] PASSED                [ 51%]
1290s tests/test_trajectory.py::test_read_write[xtc-pdb] PASSED                [ 51%]
1290s tests/test_trajectory.py::test_read_write[xtc-pdb.gz] PASSED             [ 51%]
1290s tests/test_trajectory.py::test_read_write[xtc-ncrst] SKIPPED (ncrst ...) [ 51%]
1290s tests/test_trajectory.py::test_read_write[xtc-rst7] SKIPPED (rst7 ca...) [ 51%]
1290s tests/test_trajectory.py::test_read_write[xtc-gro] PASSED                [ 51%]
1290s tests/test_trajectory.py::test_read_write[trr-nc] PASSED                 [ 51%]
1290s tests/test_trajectory.py::test_read_write[trr-h5] PASSED                 [ 51%]
1291s tests/test_trajectory.py::test_read_write[trr-xtc] PASSED                [ 51%]
1291s tests/test_trajectory.py::test_read_write[trr-trr] PASSED                [ 51%]
1291s tests/test_trajectory.py::test_read_write[trr-dcd] PASSED                [ 52%]
1291s tests/test_trajectory.py::test_read_write[trr-mdcrd] SKIPPED (mdcrd ...) [ 52%]
1291s tests/test_trajectory.py::test_read_write[trr-binpos] PASSED             [ 52%]
1291s tests/test_trajectory.py::test_read_write[trr-dtr] PASSED                [ 52%]
1292s tests/test_trajectory.py::test_read_write[trr-xyz] PASSED                [ 52%]
1292s tests/test_trajectory.py::test_read_write[trr-xyz.gz] PASSED             [ 52%]
1292s tests/test_trajectory.py::test_read_write[trr-lammpstrj] PASSED          [ 52%]
1292s tests/test_trajectory.py::test_read_write[trr-tng] PASSED                [ 52%]
1292s tests/test_trajectory.py::test_read_write[trr-lh5] PASSED                [ 52%]
1293s tests/test_trajectory.py::test_read_write[trr-pdb] PASSED                [ 52%]
1294s tests/test_trajectory.py::test_read_write[trr-pdb.gz] PASSED             [ 52%]
1294s tests/test_trajectory.py::test_read_write[trr-ncrst] SKIPPED (ncrst ...) [ 52%]
1294s tests/test_trajectory.py::test_read_write[trr-rst7] SKIPPED (rst7 ca...) [ 52%]
1294s tests/test_trajectory.py::test_read_write[trr-gro] PASSED                [ 53%]
1294s tests/test_trajectory.py::test_read_write[dcd-nc] PASSED                 [ 53%]
1294s tests/test_trajectory.py::test_read_write[dcd-h5] PASSED                 [ 53%]
1294s tests/test_trajectory.py::test_read_write[dcd-xtc] PASSED                [ 53%]
1294s tests/test_trajectory.py::test_read_write[dcd-trr] PASSED                [ 53%]
1294s tests/test_trajectory.py::test_read_write[dcd-dcd] PASSED                [ 53%]
1294s tests/test_trajectory.py::test_read_write[dcd-mdcrd] SKIPPED (mdcrd ...) [ 53%]
1294s tests/test_trajectory.py::test_read_write[dcd-binpos] PASSED             [ 53%]
1295s tests/test_trajectory.py::test_read_write[dcd-dtr] PASSED                [ 53%]
1295s tests/test_trajectory.py::test_read_write[dcd-xyz] PASSED                [ 53%]
1295s tests/test_trajectory.py::test_read_write[dcd-xyz.gz] PASSED             [ 53%]
1295s tests/test_trajectory.py::test_read_write[dcd-lammpstrj] PASSED          [ 53%]
1295s tests/test_trajectory.py::test_read_write[dcd-tng] PASSED                [ 54%]
1295s tests/test_trajectory.py::test_read_write[dcd-lh5] PASSED                [ 54%]
1296s tests/test_trajectory.py::test_read_write[dcd-pdb] PASSED                [ 54%]
1296s tests/test_trajectory.py::test_read_write[dcd-pdb.gz] PASSED             [ 54%]
1296s tests/test_trajectory.py::test_read_write[dcd-ncrst] SKIPPED (ncrst ...) [ 54%]
1296s tests/test_trajectory.py::test_read_write[dcd-rst7] SKIPPED (rst7 ca...) [ 54%]
1296s tests/test_trajectory.py::test_read_write[dcd-gro] PASSED                [ 54%]
1296s tests/test_trajectory.py::test_read_write[mdcrd-nc] PASSED               [ 54%]
1296s tests/test_trajectory.py::test_read_write[mdcrd-h5] PASSED               [ 54%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-xtc] PASSED              [ 54%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-trr] PASSED              [ 54%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-dcd] PASSED              [ 54%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-mdcrd] SKIPPED (mdcr...) [ 55%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-binpos] PASSED           [ 55%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-dtr] SKIPPED (dtr ne...) [ 55%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-xyz] PASSED              [ 55%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-xyz.gz] PASSED           [ 55%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-lammpstrj] SKIPPED (...) [ 55%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-tng] PASSED              [ 55%]
1297s tests/test_trajectory.py::test_read_write[mdcrd-lh5] PASSED              [ 55%]
1298s tests/test_trajectory.py::test_read_write[mdcrd-pdb] PASSED              [ 55%]
1299s tests/test_trajectory.py::test_read_write[mdcrd-pdb.gz] PASSED           [ 55%]
1299s tests/test_trajectory.py::test_read_write[mdcrd-ncrst] SKIPPED (ncrs...) [ 55%]
1299s tests/test_trajectory.py::test_read_write[mdcrd-rst7] SKIPPED (rst7 ...) [ 55%]
1300s tests/test_trajectory.py::test_read_write[mdcrd-gro] PASSED              [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-nc] PASSED              [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-h5] PASSED              [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-xtc] PASSED             [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-trr] PASSED             [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-dcd] PASSED             [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-mdcrd] SKIPPED (mdc...) [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-binpos] PASSED          [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-dtr] SKIPPED (dtr n...) [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-xyz] PASSED             [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-xyz.gz] PASSED          [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-lammpstrj] SKIPPED      [ 56%]
1300s tests/test_trajectory.py::test_read_write[binpos-tng] PASSED             [ 57%]
1300s tests/test_trajectory.py::test_read_write[binpos-lh5] PASSED             [ 57%]
1300s tests/test_trajectory.py::test_read_write[binpos-pdb] PASSED             [ 57%]
1301s tests/test_trajectory.py::test_read_write[binpos-pdb.gz] PASSED          [ 57%]
1301s tests/test_trajectory.py::test_read_write[binpos-ncrst] SKIPPED (ncr...) [ 57%]
1301s tests/test_trajectory.py::test_read_write[binpos-rst7] SKIPPED (rst7...) [ 57%]
1301s tests/test_trajectory.py::test_read_write[binpos-gro] PASSED             [ 57%]
1301s tests/test_trajectory.py::test_read_write[dtr-nc] PASSED                 [ 57%]
1301s tests/test_trajectory.py::test_read_write[dtr-h5] PASSED                 [ 57%]
1301s tests/test_trajectory.py::test_read_write[dtr-xtc] PASSED                [ 57%]
1301s tests/test_trajectory.py::test_read_write[dtr-trr] PASSED                [ 57%]
1301s tests/test_trajectory.py::test_read_write[dtr-dcd] PASSED                [ 57%]
1301s tests/test_trajectory.py::test_read_write[dtr-mdcrd] SKIPPED (mdcrd ...) [ 57%]
1301s tests/test_trajectory.py::test_read_write[dtr-binpos] PASSED             [ 58%]
1302s tests/test_trajectory.py::test_read_write[dtr-dtr] PASSED                [ 58%]
1302s tests/test_trajectory.py::test_read_write[dtr-xyz] PASSED                [ 58%]
1302s tests/test_trajectory.py::test_read_write[dtr-xyz.gz] PASSED             [ 58%]
1302s tests/test_trajectory.py::test_read_write[dtr-lammpstrj] PASSED          [ 58%]
1302s tests/test_trajectory.py::test_read_write[dtr-tng] PASSED                [ 58%]
1302s tests/test_trajectory.py::test_read_write[dtr-lh5] PASSED                [ 58%]
1303s tests/test_trajectory.py::test_read_write[dtr-pdb] PASSED                [ 58%]
1303s tests/test_trajectory.py::test_read_write[dtr-pdb.gz] PASSED             [ 58%]
1303s tests/test_trajectory.py::test_read_write[dtr-ncrst] SKIPPED (ncrst ...) [ 58%]
1303s tests/test_trajectory.py::test_read_write[dtr-rst7] SKIPPED (rst7 ca...) [ 58%]
1303s tests/test_trajectory.py::test_read_write[dtr-gro] PASSED                [ 58%]
1303s tests/test_trajectory.py::test_read_write[xyz-nc] PASSED                 [ 59%]
1303s tests/test_trajectory.py::test_read_write[xyz-h5] PASSED                 [ 59%]
1303s tests/test_trajectory.py::test_read_write[xyz-xtc] PASSED                [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-trr] PASSED                [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-dcd] PASSED                [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-mdcrd] SKIPPED (mdcrd ...) [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-binpos] PASSED             [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-dtr] SKIPPED (dtr need...) [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-xyz] PASSED                [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-xyz.gz] PASSED             [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-lammpstrj] SKIPPED (la...) [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-tng] PASSED                [ 59%]
1304s tests/test_trajectory.py::test_read_write[xyz-lh5] PASSED                [ 60%]
1304s tests/test_trajectory.py::test_read_write[xyz-pdb] PASSED                [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz-pdb.gz] PASSED             [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz-ncrst] SKIPPED (ncrst ...) [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz-rst7] SKIPPED (rst7 ca...) [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz-gro] PASSED                [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz.gz-nc] PASSED              [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz.gz-h5] PASSED              [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz.gz-xtc] PASSED             [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz.gz-trr] PASSED             [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz.gz-dcd] PASSED             [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz.gz-mdcrd] SKIPPED (mdc...) [ 60%]
1305s tests/test_trajectory.py::test_read_write[xyz.gz-binpos] PASSED          [ 61%]
1305s tests/test_trajectory.py::test_read_write[xyz.gz-dtr] SKIPPED (dtr n...) [ 61%]
1306s tests/test_trajectory.py::test_read_write[xyz.gz-xyz] PASSED             [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-xyz.gz] PASSED          [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-lammpstrj] SKIPPED      [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-tng] PASSED             [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-lh5] PASSED             [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-pdb] PASSED             [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-pdb.gz] PASSED          [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-ncrst] SKIPPED (ncr...) [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-rst7] SKIPPED (rst7...) [ 61%]
1308s tests/test_trajectory.py::test_read_write[xyz.gz-gro] PASSED             [ 61%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-nc] PASSED           [ 62%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-h5] PASSED           [ 62%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-xtc] PASSED          [ 62%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-trr] PASSED          [ 62%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-dcd] PASSED          [ 62%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-mdcrd] SKIPPED (...) [ 62%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-binpos] PASSED       [ 62%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-dtr] PASSED          [ 62%]
1308s tests/test_trajectory.py::test_read_write[lammpstrj-xyz] PASSED          [ 62%]
1309s tests/test_trajectory.py::test_read_write[lammpstrj-xyz.gz] PASSED       [ 62%]
1309s tests/test_trajectory.py::test_read_write[lammpstrj-lammpstrj] PASSED    [ 62%]
1309s tests/test_trajectory.py::test_read_write[lammpstrj-tng] PASSED          [ 62%]
1309s tests/test_trajectory.py::test_read_write[lammpstrj-lh5] PASSED          [ 63%]
1309s tests/test_trajectory.py::test_read_write[lammpstrj-pdb] PASSED          [ 63%]
1310s tests/test_trajectory.py::test_read_write[lammpstrj-pdb.gz] PASSED       [ 63%]
1310s tests/test_trajectory.py::test_read_write[lammpstrj-ncrst] SKIPPED (...) [ 63%]
1310s tests/test_trajectory.py::test_read_write[lammpstrj-rst7] SKIPPED (r...) [ 63%]
1310s tests/test_trajectory.py::test_read_write[lammpstrj-gro] PASSED          [ 63%]
1310s tests/test_trajectory.py::test_read_write[tng-nc] PASSED                 [ 63%]
1310s tests/test_trajectory.py::test_read_write[tng-h5] PASSED                 [ 63%]
1310s tests/test_trajectory.py::test_read_write[tng-xtc] PASSED                [ 63%]
1310s tests/test_trajectory.py::test_read_write[tng-trr] PASSED                [ 63%]
1310s tests/test_trajectory.py::test_read_write[tng-dcd] PASSED                [ 63%]
1310s tests/test_trajectory.py::test_read_write[tng-mdcrd] SKIPPED (mdcrd ...) [ 63%]
1310s tests/test_trajectory.py::test_read_write[tng-binpos] PASSED             [ 63%]
1313s tests/test_trajectory.py::test_read_write[tng-dtr] PASSED                [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-xyz] PASSED                [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-xyz.gz] PASSED             [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-lammpstrj] PASSED          [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-tng] PASSED                [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-lh5] PASSED                [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-pdb] PASSED                [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-pdb.gz] PASSED             [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-ncrst] SKIPPED (ncrst ...) [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-rst7] SKIPPED (rst7 ca...) [ 64%]
1313s tests/test_trajectory.py::test_read_write[tng-gro] PASSED                [ 64%]
1313s tests/test_trajectory.py::test_read_write[lh5-nc] PASSED                 [ 64%]
1313s tests/test_trajectory.py::test_read_write[lh5-h5] PASSED                 [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-xtc] PASSED                [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-trr] PASSED                [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-dcd] PASSED                [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-mdcrd] SKIPPED (mdcrd ...) [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-binpos] PASSED             [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-dtr] SKIPPED (dtr need...) [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-xyz] PASSED                [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-xyz.gz] PASSED             [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-lammpstrj] SKIPPED (la...) [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-tng] PASSED                [ 65%]
1313s tests/test_trajectory.py::test_read_write[lh5-lh5] PASSED                [ 65%]
1314s tests/test_trajectory.py::test_read_write[lh5-pdb] PASSED                [ 66%]
1314s tests/test_trajectory.py::test_read_write[lh5-pdb.gz] PASSED             [ 66%]
1314s tests/test_trajectory.py::test_read_write[lh5-ncrst] SKIPPED (ncrst ...) [ 66%]
1314s tests/test_trajectory.py::test_read_write[lh5-rst7] SKIPPED (rst7 ca...) [ 66%]
1314s tests/test_trajectory.py::test_read_write[lh5-gro] PASSED                [ 66%]
1315s tests/test_trajectory.py::test_read_write[pdb-nc] PASSED                 [ 66%]
1315s tests/test_trajectory.py::test_read_write[pdb-h5] PASSED                 [ 66%]
1315s tests/test_trajectory.py::test_read_write[pdb-xtc] PASSED                [ 66%]
1315s tests/test_trajectory.py::test_read_write[pdb-trr] PASSED                [ 66%]
1315s tests/test_trajectory.py::test_read_write[pdb-dcd] PASSED                [ 66%]
1315s tests/test_trajectory.py::test_read_write[pdb-mdcrd] SKIPPED (mdcrd ...) [ 66%]
1316s tests/test_trajectory.py::test_read_write[pdb-binpos] PASSED             [ 66%]
1317s tests/test_trajectory.py::test_read_write[pdb-dtr] PASSED                [ 67%]
1317s tests/test_trajectory.py::test_read_write[pdb-xyz] PASSED                [ 67%]
1317s tests/test_trajectory.py::test_read_write[pdb-xyz.gz] PASSED             [ 67%]
1318s tests/test_trajectory.py::test_read_write[pdb-lammpstrj] PASSED          [ 67%]
1318s tests/test_trajectory.py::test_read_write[pdb-tng] PASSED                [ 67%]
1318s tests/test_trajectory.py::test_read_write[pdb-lh5] PASSED                [ 67%]
1319s tests/test_trajectory.py::test_read_write[pdb-pdb] PASSED                [ 67%]
1320s tests/test_trajectory.py::test_read_write[pdb-pdb.gz] PASSED             [ 67%]
1320s tests/test_trajectory.py::test_read_write[pdb-ncrst] SKIPPED (ncrst ...) [ 67%]
1320s tests/test_trajectory.py::test_read_write[pdb-rst7] SKIPPED (rst7 ca...) [ 67%]
1320s tests/test_trajectory.py::test_read_write[pdb-gro] PASSED                [ 67%]
1320s tests/test_trajectory.py::test_read_write[pdb.gz-nc] PASSED              [ 67%]
1320s tests/test_trajectory.py::test_read_write[pdb.gz-h5] PASSED              [ 68%]
1321s tests/test_trajectory.py::test_read_write[pdb.gz-xtc] PASSED             [ 68%]
1321s tests/test_trajectory.py::test_read_write[pdb.gz-trr] PASSED             [ 68%]
1321s tests/test_trajectory.py::test_read_write[pdb.gz-dcd] PASSED             [ 68%]
1321s tests/test_trajectory.py::test_read_write[pdb.gz-mdcrd] SKIPPED (mdc...) [ 68%]
1321s tests/test_trajectory.py::test_read_write[pdb.gz-binpos] PASSED          [ 68%]
1322s tests/test_trajectory.py::test_read_write[pdb.gz-dtr] PASSED             [ 68%]
1322s tests/test_trajectory.py::test_read_write[pdb.gz-xyz] PASSED             [ 68%]
1323s tests/test_trajectory.py::test_read_write[pdb.gz-xyz.gz] PASSED          [ 68%]
1323s tests/test_trajectory.py::test_read_write[pdb.gz-lammpstrj] PASSED       [ 68%]
1323s tests/test_trajectory.py::test_read_write[pdb.gz-tng] PASSED             [ 68%]
1323s tests/test_trajectory.py::test_read_write[pdb.gz-lh5] PASSED             [ 68%]
1324s tests/test_trajectory.py::test_read_write[pdb.gz-pdb] PASSED             [ 68%]
1325s tests/test_trajectory.py::test_read_write[pdb.gz-pdb.gz] PASSED          [ 69%]
1325s tests/test_trajectory.py::test_read_write[pdb.gz-ncrst] SKIPPED (ncr...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[pdb.gz-rst7] SKIPPED (rst7...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[pdb.gz-gro] PASSED             [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-nc] XFAIL (These ref...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-h5] XFAIL (These ref...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-xtc] XFAIL (These re...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-trr] XFAIL (These re...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-dcd] XFAIL (These re...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-mdcrd] XFAIL (These ...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-binpos] XFAIL (These...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-dtr] XFAIL (These re...) [ 69%]
1325s tests/test_trajectory.py::test_read_write[ncrst-xyz] XFAIL (These re...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-xyz.gz] XFAIL (These...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-lammpstrj] XFAIL (Th...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-tng] XFAIL (These re...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-lh5] XFAIL (These re...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-pdb] XFAIL (These re...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-pdb.gz] XFAIL (These...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-ncrst] XFAIL (These ...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-rst7] XFAIL (These r...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[ncrst-gro] XFAIL (These re...) [ 70%]
1325s tests/test_trajectory.py::test_read_write[rst7-nc] XFAIL (These refe...) [ 70%]
1326s tests/test_trajectory.py::test_read_write[rst7-h5] XFAIL (These refe...) [ 70%]
1326s tests/test_trajectory.py::test_read_write[rst7-xtc] XFAIL (These ref...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-trr] XFAIL (These ref...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-dcd] XFAIL (These ref...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-mdcrd] XFAIL (These r...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-binpos] XFAIL (These ...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-dtr] XFAIL (These ref...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-xyz] XFAIL (These ref...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-xyz.gz] XFAIL (These ...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-lammpstrj] XFAIL (The...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-tng] XFAIL (These ref...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-lh5] XFAIL (These ref...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-pdb] XFAIL (These ref...) [ 71%]
1326s tests/test_trajectory.py::test_read_write[rst7-pdb.gz] XFAIL (These ...) [ 72%]
1326s tests/test_trajectory.py::test_read_write[rst7-ncrst] XFAIL (These r...) [ 72%]
1326s tests/test_trajectory.py::test_read_write[rst7-rst7] XFAIL (These re...) [ 72%]
1326s tests/test_trajectory.py::test_read_write[rst7-gro] XFAIL (These ref...) [ 72%]
1326s tests/test_trajectory.py::test_read_write[gro-nc] PASSED                 [ 72%]
1326s tests/test_trajectory.py::test_read_write[gro-h5] PASSED                 [ 72%]
1326s tests/test_trajectory.py::test_read_write[gro-xtc] PASSED                [ 72%]
1326s tests/test_trajectory.py::test_read_write[gro-trr] PASSED                [ 72%]
1326s tests/test_trajectory.py::test_read_write[gro-dcd] PASSED                [ 72%]
1326s tests/test_trajectory.py::test_read_write[gro-mdcrd] SKIPPED (mdcrd ...) [ 72%]
1326s tests/test_trajectory.py::test_read_write[gro-binpos] PASSED             [ 72%]
1327s tests/test_trajectory.py::test_read_write[gro-dtr] PASSED                [ 72%]
1327s tests/test_trajectory.py::test_read_write[gro-xyz] PASSED                [ 73%]
1328s tests/test_trajectory.py::test_read_write[gro-xyz.gz] PASSED             [ 73%]
1328s tests/test_trajectory.py::test_read_write[gro-lammpstrj] PASSED          [ 73%]
1328s tests/test_trajectory.py::test_read_write[gro-tng] PASSED                [ 73%]
1328s tests/test_trajectory.py::test_read_write[gro-lh5] PASSED                [ 73%]
1328s tests/test_trajectory.py::test_read_write[gro-pdb] PASSED                [ 73%]
1329s tests/test_trajectory.py::test_read_write[gro-pdb.gz] PASSED             [ 73%]
1329s tests/test_trajectory.py::test_read_write[gro-ncrst] SKIPPED (ncrst ...) [ 73%]
1329s tests/test_trajectory.py::test_read_write[gro-rst7] SKIPPED (rst7 ca...) [ 73%]
1329s tests/test_trajectory.py::test_read_write[gro-gro] PASSED                [ 73%]
1329s tests/test_trajectory.py::test_load[nc] PASSED                           [ 73%]
1329s tests/test_trajectory.py::test_load[h5] PASSED                           [ 73%]
1329s tests/test_trajectory.py::test_load[xtc] PASSED                          [ 73%]
1329s tests/test_trajectory.py::test_load[trr] PASSED                          [ 74%]
1329s tests/test_trajectory.py::test_load[dcd] PASSED                          [ 74%]
1329s tests/test_trajectory.py::test_load[mdcrd] PASSED                        [ 74%]
1329s tests/test_trajectory.py::test_load[binpos] PASSED                       [ 74%]
1329s tests/test_trajectory.py::test_load[dtr] PASSED                          [ 74%]
1329s tests/test_trajectory.py::test_load[xyz] PASSED                          [ 74%]
1330s tests/test_trajectory.py::test_load[xyz.gz] PASSED                       [ 74%]
1330s tests/test_trajectory.py::test_load[lammpstrj] PASSED                    [ 74%]
1330s tests/test_trajectory.py::test_load[tng] PASSED                          [ 74%]
1330s tests/test_trajectory.py::test_load[lh5] PASSED                          [ 74%]
1332s tests/test_trajectory.py::test_load[pdb] PASSED                          [ 74%]
1333s tests/test_trajectory.py::test_load[pdb.gz] PASSED                       [ 74%]
1333s tests/test_trajectory.py::test_load[ncrst] XFAIL (These reference fi...) [ 75%]
1333s tests/test_trajectory.py::test_load[rst7] XFAIL (These reference fil...) [ 75%]
1333s tests/test_trajectory.py::test_load[gro] PASSED                          [ 75%]
1333s tests/test_trajectory.py::test_hdf5 PASSED                               [ 75%]
1333s tests/test_trajectory.py::test_center PASSED                             [ 75%]
1333s tests/test_trajectory.py::test_center_aind PASSED                        [ 75%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[nc] PASSED   [ 75%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[h5] PASSED   [ 75%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[xtc] PASSED  [ 75%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[trr] PASSED  [ 75%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[dcd] PASSED  [ 75%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[mdcrd] PASSED [ 75%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[binpos] PASSED [ 76%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[dtr] PASSED  [ 76%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[xyz] PASSED  [ 76%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[xyz.gz] PASSED [ 76%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[lammpstrj] PASSED [ 76%]
1333s tests/test_trajectory.py::test_float_atom_indices_exception[tng] PASSED  [ 76%]
1334s tests/test_trajectory.py::test_float_atom_indices_exception[lh5] PASSED  [ 76%]
1334s tests/test_trajectory.py::test_float_atom_indices_exception[pdb] PASSED  [ 76%]
1334s tests/test_trajectory.py::test_float_atom_indices_exception[pdb.gz] PASSED [ 76%]
1334s tests/test_trajectory.py::test_float_atom_indices_exception[ncrst] XFAIL [ 76%]
1334s tests/test_trajectory.py::test_float_atom_indices_exception[rst7] XFAIL  [ 76%]
1334s tests/test_trajectory.py::test_float_atom_indices_exception[gro] PASSED  [ 76%]
1334s tests/test_trajectory.py::test_restrict_atoms PASSED                     [ 77%]
1334s tests/test_trajectory.py::test_restrict_atoms_not_inplace PASSED         [ 77%]
1334s tests/test_trajectory.py::test_array_vs_matrix PASSED                    [ 77%]
1334s tests/test_trajectory.py::test_pdb_unitcell_loadsave PASSED              [ 77%]
1334s tests/test_trajectory.py::test_load_combination[nc] PASSED               [ 77%]
1334s tests/test_trajectory.py::test_load_combination[h5] PASSED               [ 77%]
1334s tests/test_trajectory.py::test_load_combination[xtc] PASSED              [ 77%]
1334s tests/test_trajectory.py::test_load_combination[trr] PASSED              [ 77%]
1334s tests/test_trajectory.py::test_load_combination[dcd] PASSED              [ 77%]
1334s tests/test_trajectory.py::test_load_combination[mdcrd] PASSED            [ 77%]
1334s tests/test_trajectory.py::test_load_combination[binpos] PASSED           [ 77%]
1334s tests/test_trajectory.py::test_load_combination[dtr] PASSED              [ 77%]
1334s tests/test_trajectory.py::test_load_combination[xyz] PASSED              [ 78%]
1334s tests/test_trajectory.py::test_load_combination[xyz.gz] PASSED           [ 78%]
1334s tests/test_trajectory.py::test_load_combination[lammpstrj] PASSED        [ 78%]
1334s tests/test_trajectory.py::test_load_combination[tng] PASSED              [ 78%]
1334s tests/test_trajectory.py::test_load_combination[lh5] PASSED              [ 78%]
1335s tests/test_trajectory.py::test_load_combination[pdb] PASSED              [ 78%]
1335s tests/test_trajectory.py::test_load_combination[pdb.gz] PASSED           [ 78%]
1335s tests/test_trajectory.py::test_load_combination[ncrst] XFAIL (These ...) [ 78%]
1335s tests/test_trajectory.py::test_load_combination[rst7] XFAIL (These r...) [ 78%]
1335s tests/test_trajectory.py::test_load_combination[gro] PASSED              [ 78%]
1335s tests/test_trajectory.py::test_no_topology PASSED                        [ 78%]
1335s tests/test_trajectory.py::test_join PASSED                               [ 78%]
1335s tests/test_trajectory.py::test_md_join PASSED                            [ 78%]
1335s tests/test_trajectory.py::test_stack_1 PASSED                            [ 79%]
1335s tests/test_trajectory.py::test_stack_2 PASSED                            [ 79%]
1335s tests/test_trajectory.py::test_seek_read_mode[nc] PASSED                 [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[h5] PASSED                 [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[xtc] PASSED                [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[trr] PASSED                [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[dcd] PASSED                [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[mdcrd] PASSED              [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[binpos] PASSED             [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[dtr] PASSED                [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[xyz] PASSED                [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[xyz.gz] XFAIL (This is...) [ 79%]
1336s tests/test_trajectory.py::test_seek_read_mode[lammpstrj] PASSED          [ 80%]
1336s tests/test_trajectory.py::test_seek_read_mode[tng] PASSED                [ 80%]
1336s tests/test_trajectory.py::test_seek_read_mode[lh5] PASSED                [ 80%]
1336s tests/test_trajectory.py::test_seek_read_mode[pdb] XFAIL (PDB Files ...) [ 80%]
1336s tests/test_trajectory.py::test_seek_read_mode[pdb.gz] XFAIL (PDB Fil...) [ 80%]
1336s tests/test_trajectory.py::test_seek_read_mode[ncrst] XFAIL (These re...) [ 80%]
1336s tests/test_trajectory.py::test_seek_read_mode[rst7] XFAIL (These ref...) [ 80%]
1336s tests/test_trajectory.py::test_seek_read_mode[gro] XFAIL (This is br...) [ 80%]
1336s tests/test_trajectory.py::test_load_frame[nc] PASSED                     [ 80%]
1336s tests/test_trajectory.py::test_load_frame[h5] PASSED                     [ 80%]
1336s tests/test_trajectory.py::test_load_frame[xtc] PASSED                    [ 80%]
1336s tests/test_trajectory.py::test_load_frame[trr] PASSED                    [ 80%]
1336s tests/test_trajectory.py::test_load_frame[dcd] PASSED                    [ 81%]
1336s tests/test_trajectory.py::test_load_frame[mdcrd] PASSED                  [ 81%]
1336s tests/test_trajectory.py::test_load_frame[binpos] PASSED                 [ 81%]
1336s tests/test_trajectory.py::test_load_frame[dtr] XFAIL (DTR doesn't lo...) [ 81%]
1336s tests/test_trajectory.py::test_load_frame[xyz] PASSED                    [ 81%]
1336s tests/test_trajectory.py::test_load_frame[xyz.gz] PASSED                 [ 81%]
1336s tests/test_trajectory.py::test_load_frame[lammpstrj] PASSED              [ 81%]
1336s tests/test_trajectory.py::test_load_frame[tng] PASSED                    [ 81%]
1336s tests/test_trajectory.py::test_load_frame[lh5] PASSED                    [ 81%]
1337s tests/test_trajectory.py::test_load_frame[pdb] PASSED                    [ 81%]
1337s tests/test_trajectory.py::test_load_frame[pdb.gz] PASSED                 [ 81%]
1337s tests/test_trajectory.py::test_load_frame[ncrst] XFAIL (These refere...) [ 81%]
1337s tests/test_trajectory.py::test_load_frame[rst7] XFAIL (These referen...) [ 82%]
1337s tests/test_trajectory.py::test_load_frame[gro] XFAIL (Gro doesn't im...) [ 82%]
1338s tests/test_trajectory.py::test_load_frame_2eqq PASSED                    [ 82%]
1338s tests/test_trajectory.py::test_iterload[nc] PASSED                       [ 82%]
1338s tests/test_trajectory.py::test_iterload[h5] PASSED                       [ 82%]
1338s tests/test_trajectory.py::test_iterload[xtc] PASSED                      [ 82%]
1338s tests/test_trajectory.py::test_iterload[trr] PASSED                      [ 82%]
1338s tests/test_trajectory.py::test_iterload[dcd] PASSED                      [ 82%]
1338s tests/test_trajectory.py::test_iterload[mdcrd] PASSED                    [ 82%]
1338s tests/test_trajectory.py::test_iterload[binpos] PASSED                   [ 82%]
1338s tests/test_trajectory.py::test_iterload[dtr] XFAIL (This is broken w...) [ 82%]
1338s tests/test_trajectory.py::test_iterload[xyz] PASSED                      [ 82%]
1338s tests/test_trajectory.py::test_iterload[xyz.gz] PASSED                   [ 83%]
1338s tests/test_trajectory.py::test_iterload[lammpstrj] PASSED                [ 83%]
1338s tests/test_trajectory.py::test_iterload[tng] PASSED                      [ 83%]
1338s tests/test_trajectory.py::test_iterload[lh5] PASSED                      [ 83%]
1338s tests/test_trajectory.py::test_iterload[pdb] PASSED                      [ 83%]
1338s tests/test_trajectory.py::test_iterload[pdb.gz] PASSED                   [ 83%]
1338s tests/test_trajectory.py::test_iterload[ncrst] SKIPPED (Only 1 frame...) [ 83%]
1338s tests/test_trajectory.py::test_iterload[rst7] SKIPPED (Only 1 frame ...) [ 83%]
1338s tests/test_trajectory.py::test_iterload[gro] PASSED                      [ 83%]
1339s tests/test_trajectory.py::test_iterload_skip[nc] PASSED                  [ 83%]
1341s tests/test_trajectory.py::test_iterload_skip[h5] PASSED                  [ 83%]
1342s tests/test_trajectory.py::test_iterload_skip[xtc] PASSED                 [ 83%]
1344s tests/test_trajectory.py::test_iterload_skip[trr] PASSED                 [ 84%]
1344s tests/test_trajectory.py::test_iterload_skip[dcd] PASSED                 [ 84%]
1346s tests/test_trajectory.py::test_iterload_skip[mdcrd] PASSED               [ 84%]
1347s tests/test_trajectory.py::test_iterload_skip[binpos] PASSED              [ 84%]
1347s tests/test_trajectory.py::test_iterload_skip[dtr] PASSED                 [ 84%]
1348s tests/test_trajectory.py::test_iterload_skip[xyz] PASSED                 [ 84%]
1349s tests/test_trajectory.py::test_iterload_skip[xyz.gz] PASSED              [ 84%]
1350s tests/test_trajectory.py::test_iterload_skip[lammpstrj] PASSED           [ 84%]
1351s tests/test_trajectory.py::test_iterload_skip[tng] PASSED                 [ 84%]
1353s tests/test_trajectory.py::test_iterload_skip[lh5] PASSED                 [ 84%]
1353s tests/test_trajectory.py::test_iterload_skip[pdb] XFAIL (PDB Iterloa...) [ 84%]
1353s tests/test_trajectory.py::test_iterload_skip[pdb.gz] XFAIL (PDB Iter...) [ 84%]
1353s tests/test_trajectory.py::test_iterload_skip[ncrst] XFAIL (These ref...) [ 84%]
1353s tests/test_trajectory.py::test_iterload_skip[rst7] XFAIL (These refe...) [ 85%]
1353s tests/test_trajectory.py::test_iterload_skip[gro] XFAIL (Not impleme...) [ 85%]
1353s tests/test_trajectory.py::test_iterload_chunk_dcd PASSED                 [ 85%]
1353s tests/test_trajectory.py::test_save_load[nc] PASSED                      [ 85%]
1353s tests/test_trajectory.py::test_save_load[h5] PASSED                      [ 85%]
1353s tests/test_trajectory.py::test_save_load[xtc] PASSED                     [ 85%]
1353s tests/test_trajectory.py::test_save_load[trr] PASSED                     [ 85%]
1353s tests/test_trajectory.py::test_save_load[dcd] PASSED                     [ 85%]
1353s tests/test_trajectory.py::test_save_load[mdcrd] PASSED                   [ 85%]
1353s tests/test_trajectory.py::test_save_load[binpos] PASSED                  [ 85%]
1353s tests/test_trajectory.py::test_save_load[dtr] PASSED                     [ 85%]
1353s tests/test_trajectory.py::test_save_load[xyz] PASSED                     [ 85%]
1353s tests/test_trajectory.py::test_save_load[xyz.gz] PASSED                  [ 86%]
1353s tests/test_trajectory.py::test_save_load[lammpstrj] PASSED               [ 86%]
1353s tests/test_trajectory.py::test_save_load[tng] PASSED                     [ 86%]
1353s tests/test_trajectory.py::test_save_load[lh5] PASSED                     [ 86%]
1353s tests/test_trajectory.py::test_save_load[pdb] PASSED                     [ 86%]
1353s tests/test_trajectory.py::test_save_load[pdb.gz] PASSED                  [ 86%]
1353s tests/test_trajectory.py::test_save_load[ncrst] PASSED                   [ 86%]
1353s tests/test_trajectory.py::test_save_load[rst7] PASSED                    [ 86%]
1353s tests/test_trajectory.py::test_save_load[gro] PASSED                     [ 86%]
1353s tests/test_trajectory.py::test_force_overwrite[nc] PASSED                [ 86%]
1353s tests/test_trajectory.py::test_force_overwrite[h5] PASSED                [ 86%]
1353s tests/test_trajectory.py::test_force_overwrite[xtc] PASSED               [ 86%]
1353s tests/test_trajectory.py::test_force_overwrite[trr] PASSED               [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[dcd] PASSED               [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[mdcrd] PASSED             [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[binpos] PASSED            [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[dtr] XFAIL (This is b...) [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[xyz] PASSED               [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[xyz.gz] PASSED            [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[lammpstrj] PASSED         [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[tng] PASSED               [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[lh5] PASSED               [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[pdb] PASSED               [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[pdb.gz] PASSED            [ 87%]
1353s tests/test_trajectory.py::test_force_overwrite[ncrst] PASSED             [ 88%]
1354s tests/test_trajectory.py::test_force_overwrite[rst7] PASSED              [ 88%]
1354s tests/test_trajectory.py::test_force_overwrite[gro] PASSED               [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[nc] PASSED               [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[h5] PASSED               [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[xtc] PASSED              [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[trr] PASSED              [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[dcd] PASSED              [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[mdcrd] PASSED            [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[binpos] PASSED           [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[dtr] PASSED              [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[xyz] PASSED              [ 88%]
1354s tests/test_trajectory.py::test_force_noverwrite[xyz.gz] PASSED           [ 89%]
1354s tests/test_trajectory.py::test_force_noverwrite[lammpstrj] PASSED        [ 89%]
1354s tests/test_trajectory.py::test_force_noverwrite[tng] PASSED              [ 89%]
1354s tests/test_trajectory.py::test_force_noverwrite[lh5] PASSED              [ 89%]
1354s tests/test_trajectory.py::test_force_noverwrite[pdb] PASSED              [ 89%]
1354s tests/test_trajectory.py::test_force_noverwrite[pdb.gz] PASSED           [ 89%]
1354s tests/test_trajectory.py::test_force_noverwrite[ncrst] PASSED            [ 89%]
1354s tests/test_trajectory.py::test_force_noverwrite[rst7] PASSED             [ 89%]
1354s tests/test_trajectory.py::test_force_noverwrite[gro] PASSED              [ 89%]
1354s tests/test_trajectory.py::test_open_and_load PASSED                      [ 89%]
1354s tests/test_trajectory.py::test_length PASSED                             [ 89%]
1354s tests/test_trajectory.py::test_unitcell[nc] PASSED                       [ 89%]
1354s tests/test_trajectory.py::test_unitcell[h5] PASSED                       [ 89%]
1354s tests/test_trajectory.py::test_unitcell[xtc] PASSED                      [ 90%]
1354s tests/test_trajectory.py::test_unitcell[trr] PASSED                      [ 90%]
1354s tests/test_trajectory.py::test_unitcell[dcd] PASSED                      [ 90%]
1354s tests/test_trajectory.py::test_unitcell[mdcrd] PASSED                    [ 90%]
1354s tests/test_trajectory.py::test_unitcell[binpos] PASSED                   [ 90%]
1354s tests/test_trajectory.py::test_unitcell[dtr] XFAIL (dtr seems to nee...) [ 90%]
1354s tests/test_trajectory.py::test_unitcell[xyz] PASSED                      [ 90%]
1354s tests/test_trajectory.py::test_unitcell[xyz.gz] PASSED                   [ 90%]
1354s tests/test_trajectory.py::test_unitcell[lammpstrj] XFAIL (lammpstrj ...) [ 90%]
1354s tests/test_trajectory.py::test_unitcell[tng] PASSED                      [ 90%]
1354s tests/test_trajectory.py::test_unitcell[lh5] PASSED                      [ 90%]
1354s tests/test_trajectory.py::test_unitcell[pdb] PASSED                      [ 90%]
1354s tests/test_trajectory.py::test_unitcell[pdb.gz] PASSED                   [ 91%]
1354s tests/test_trajectory.py::test_unitcell[ncrst] XFAIL (ncrst seems to...) [ 91%]
1354s tests/test_trajectory.py::test_unitcell[rst7] XFAIL (rst7 seems to n...) [ 91%]
1354s tests/test_trajectory.py::test_unitcell[gro] PASSED                      [ 91%]
1354s tests/test_trajectory.py::test_chunk0_iterload PASSED                    [ 91%]
1355s tests/test_trajectory.py::test_hashing PASSED                            [ 91%]
1355s tests/test_trajectory.py::test_smooth PASSED                             [ 91%]
1355s tests/test_trajectory.py::test_load_pdb_no_standard_names PASSED         [ 91%]
1355s tests/test_trajectory.py::test_load_with_atom_indices PASSED             [ 91%]
1355s tests/test_trajectory.py::test_load_with_frame PASSED                    [ 91%]
1355s tests/test_trajectory.py::test_add_remove_atoms PASSED                   [ 91%]
1355s tests/test_trr.py::test_1 PASSED                                         [ 91%]
1355s tests/test_trr.py::test_read_stride PASSED                               [ 92%]
1355s tests/test_trr.py::test_read_stride_n_frames PASSED                      [ 92%]
1355s tests/test_trr.py::test_read_stride_offsets PASSED                       [ 92%]
1355s tests/test_trr.py::test_read_stride_n_frames_offsets PASSED              [ 92%]
1355s tests/test_trr.py::test_read_stride_switching PASSED                     [ 92%]
1355s tests/test_trr.py::test_write_read PASSED                                [ 92%]
1355s tests/test_trr.py::test_read_atomindices_1 PASSED                        [ 92%]
1355s tests/test_trr.py::test_read_atomindices_2 PASSED                        [ 92%]
1355s tests/test_trr.py::test_deficient_shape PASSED                           [ 92%]
1355s tests/test_trr.py::test_ragged_1 PASSED                                  [ 92%]
1355s tests/test_trr.py::test_ragged_2 PASSED                                  [ 92%]
1355s tests/test_trr.py::test_malformed PASSED                                 [ 92%]
1355s tests/test_trr.py::test_tell PASSED                                      [ 93%]
1355s tests/test_trr.py::test_seek PASSED                                      [ 93%]
1355s tests/test_trr.py::test_get_velocities PASSED                            [ 93%]
1355s tests/test_trr.py::test_get_forces PASSED                                [ 93%]
1355s tests/test_trr.py::test_get_velocities_and_forces PASSED                 [ 93%]
1355s tests/test_trr.py::test_get_velocities_forces_atom_indices_1 PASSED      [ 93%]
1355s tests/test_trr.py::test_get_velocities_forces_atom_indices_2 PASSED      [ 93%]
1355s tests/test_trr.py::test_read_velocities_do_not_exist PASSED              [ 93%]
1355s tests/test_trr.py::test_read_forces_do_not_exist PASSED                  [ 93%]
1355s tests/test_utils.py::test_unitcell_0 PASSED                              [ 93%]
1355s tests/test_utils.py::test_unitcell_1 PASSED                              [ 93%]
1355s tests/test_utils.py::test_ensure_type_1 PASSED                           [ 93%]
1355s tests/test_utils.py::test_ensure_type_2 PASSED                           [ 94%]
1355s tests/test_utils.py::test_ensure_type_25 PASSED                          [ 94%]
1355s tests/test_utils.py::test_ensure_type_3 PASSED                           [ 94%]
1355s tests/test_utils.py::test_ensure_type_4 PASSED                           [ 94%]
1355s tests/test_utils.py::test_ensure_type_5 PASSED                           [ 94%]
1355s tests/test_utils.py::test_ensure_type_6 PASSED                           [ 94%]
1355s tests/test_utils.py::test_ensure_type_7 PASSED                           [ 94%]
1355s tests/test_utils.py::test_ensure_type_8 PASSED                           [ 94%]
1355s tests/test_utils.py::test_ensure_type_9 PASSED                           [ 94%]
1355s tests/test_utils.py::test_ensure_type_10 PASSED                          [ 94%]
1355s tests/test_utils.py::test_ensure_type_11 PASSED                          [ 94%]
1355s tests/test_utils.py::test_ensure_type_12 PASSED                          [ 94%]
1355s tests/test_utils.py::test_ensure_type_13 PASSED                          [ 94%]
1355s tests/test_utils.py::test_ensure_type_14 PASSED                          [ 95%]
1355s tests/test_utils.py::test_ensure_type_15 PASSED                          [ 95%]
1355s tests/test_utils.py::test_delay_import_fail_1 PASSED                     [ 95%]
1355s tests/test_utils.py::test_delay_import PASSED                            [ 95%]
1355s tests/test_utils.py::test_unit_0 PASSED                                  [ 95%]
1355s tests/test_utils.py::test_unit_1 PASSED                                  [ 95%]
1355s tests/test_utils.py::test_unit_2 PASSED                                  [ 95%]
1355s tests/test_utils.py::test_unit_3 PASSED                                  [ 95%]
1355s tests/test_xml.py::test_xml PASSED                                       [ 95%]
1355s tests/test_xtc.py::test_read_chunk1 PASSED                               [ 95%]
1356s tests/test_xtc.py::test_read_stride PASSED                               [ 95%]
1356s tests/test_xtc.py::test_read_stride_n_frames PASSED                      [ 95%]
1356s tests/test_xtc.py::test_read_stride_offsets PASSED                       [ 96%]
1356s tests/test_xtc.py::test_read_stride_n_frames_offsets PASSED              [ 96%]
1356s tests/test_xtc.py::test_read_stride_switching_offsets PASSED             [ 96%]
1356s tests/test_xtc.py::test_read_atomindices_1 PASSED                        [ 96%]
1356s tests/test_xtc.py::test_read_atomindices_w_stride PASSED                 [ 96%]
1356s tests/test_xtc.py::test_read_atomindices_2 PASSED                        [ 96%]
1356s tests/test_xtc.py::test_read_chunk2 PASSED                               [ 96%]
1356s tests/test_xtc.py::test_read_chunk3 PASSED                               [ 96%]
1356s tests/test_xtc.py::test_write_0 PASSED                                   [ 96%]
1356s tests/test_xtc.py::test_write_1 PASSED                                   [ 96%]
1356s tests/test_xtc.py::test_write_2 PASSED                                   [ 96%]
1356s tests/test_xtc.py::test_read_error_0 PASSED                              [ 96%]
1356s tests/test_xtc.py::test_write_error_0 PASSED                             [ 97%]
1356s tests/test_xtc.py::test_read_error_1 PASSED                              [ 97%]
1356s tests/test_xtc.py::test_read_error_2 PASSED                              [ 97%]
1356s tests/test_xtc.py::test_xtc_write_wierd_0 PASSED                         [ 97%]
1356s tests/test_xtc.py::test_tell PASSED                                      [ 97%]
1356s tests/test_xtc.py::test_seek PASSED                                      [ 97%]
1356s tests/test_xtc.py::test_seek_natoms9 PASSED                              [ 97%]
1356s tests/test_xtc.py::test_seek_out_of_bounds PASSED                        [ 97%]
1356s tests/test_xtc.py::test_ragged_1 PASSED                                  [ 97%]
1356s tests/test_xtc.py::test_ragged_2 PASSED                                  [ 97%]
1356s tests/test_xtc.py::test_short_traj PASSED                                [ 97%]
1356s tests/test_xtc.py::test_flush PASSED                                     [ 97%]
1356s tests/test_xyz.py::test_read_0 PASSED                                    [ 98%]
1356s tests/test_xyz.py::test_read_1 PASSED                                    [ 98%]
1356s tests/test_xyz.py::test_read_gz PASSED                                   [ 98%]
1356s tests/test_xyz.py::test_read_write PASSED                                [ 98%]
1356s tests/test_xyz.py::test_mdwrite PASSED                                   [ 98%]
1356s tests/test_xyz.py::test_multiread PASSED                                 [ 98%]
1356s tests/test_xyz.py::test_seek PASSED                                      [ 98%]
1356s tests/test_xyz.py::test_len PASSED                                       [ 98%]
1356s tests/test_zipped.py::test_read_gz PASSED                                [ 98%]
1356s tests/test_zipped.py::test_write_gz PASSED                               [ 98%]
1356s tests/test_zipped.py::test_read_bz2 PASSED                               [ 98%]
1356s tests/test_zipped.py::test_write_bz2 PASSED                              [ 98%]
1360s examples/test_examples.py::test_example_notebook[rmsd-drift.ipynb] PASSED [ 99%]
1364s examples/test_examples.py::test_example_notebook[principal-components.ipynb] PASSED [ 99%]
1364s examples/test_examples.py::test_example_notebook[simulation-with-openmm.ipynb] SKIPPED [ 99%]
1368s examples/test_examples.py::test_example_notebook[ramachandran-plot.ipynb] PASSED [ 99%]
1368s examples/test_examples.py::test_example_notebook[hbonds.ipynb] SKIPPED   [ 99%]
1369s examples/test_examples.py::test_example_notebook[centroids.ipynb] PASSED [ 99%]
1371s examples/test_examples.py::test_example_notebook[rmsd-benchmark.ipynb] PASSED [ 99%]
1373s examples/test_examples.py::test_example_notebook[iterload.ipynb] PASSED  [ 99%]
1373s examples/test_examples.py::test_example_notebook[native-contact.ipynb] SKIPPED [ 99%]
1374s examples/test_examples.py::test_example_notebook[two-pass-clustering.ipynb] PASSED [ 99%]
1377s examples/test_examples.py::test_example_notebook[solvent-accessible-surface-area.ipynb] PASSED [ 99%]
1379s examples/test_examples.py::test_example_notebook[atom-selection.ipynb] PASSED [ 99%]
1381s examples/test_examples.py::test_example_notebook[clustering.ipynb] PASSED [100%]
1381s 
1381s =============================== warnings summary ===============================
1381s ../../../../usr/lib/python3/dist-packages/mdtraj/utils/unit/__init__.py:57
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/unit/__init__.py:57: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
1381s     ast.Pow, ast.Div, ast.Mult, ast.Num]
1381s 
1381s ../../../../usr/lib/python3/dist-packages/mdtraj/formats/__init__.py:6
1381s   /usr/lib/python3/dist-packages/mdtraj/formats/__init__.py:6: DeprecationWarning: 'xdrlib' is deprecated and slated for removal in Python 3.13
1381s     from .xtc import XTCTrajectoryFile
1381s 
1381s ../../../../usr/lib/python3/dist-packages/mdtraj/geometry/order.py:25
1381s   /usr/lib/python3/dist-packages/mdtraj/geometry/order.py:25: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
1381s     from pkg_resources import parse_version
1381s 
1381s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871
1381s   /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
1381s   Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
1381s     declare_namespace(pkg)
1381s 
1381s ../../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37
1381s   /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC).
1381s     EPOCH = datetime.datetime.utcfromtimestamp(0)
1381s 
1381s ../../../../usr/lib/python3/dist-packages/jupyter_client/connect.py:27
1381s   /usr/lib/python3/dist-packages/jupyter_client/connect.py:27: DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
1381s   given by the platformdirs library.  To remove this warning and
1381s   see the appropriate new directories, set the environment variable
1381s   `JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
1381s   The use of platformdirs will be the default in `jupyter_core` v6
1381s     from jupyter_core.paths import jupyter_data_dir
1381s 
1381s examples/test_examples.py:26
1381s   /tmp/autopkgtest.DDZHGr/build.buw/src/examples/test_examples.py:26: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
1381s     examples = [pytest.param(fn, marks=pytest.mark.flaky) if fn in FLAKEY_LIST else fn
1381s 
1381s tests/test_angles.py::test_angle_pbc_0
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/validation.py:115: TypeCastPerformanceWarning: Casting unitcell_vectors dtype=float64 to <class 'numpy.float32'> 
1381s     warnings.warn("Casting %s dtype=%s to %s " % (name, val.dtype, dtype),
1381s 
1381s tests/test_arc.py::test_read_arctraj
1381s tests/test_order.py::test_nematic_order
1381s tests/test_order.py::test_director
1381s tests/test_order.py::test_inertia
1381s tests/test_order.py::test_nematic_order_args
1381s tests/test_shape.py::test_gyration
1381s   /usr/lib/python3/dist-packages/mdtraj/formats/pdb/pdbfile.py:198: RuntimeWarning: divide by zero encountered in divide
1381s     particle_density = traj.top.n_atoms / traj.unitcell_volumes[0]
1381s 
1381s tests/test_arc.py: 1 warning
1381s tests/test_gro.py: 3 warnings
1381s tests/test_order.py: 4 warnings
1381s tests/test_pdb.py: 1 warning
1381s tests/test_shape.py: 4 warnings
1381s   /usr/lib/python3/dist-packages/mdtraj/formats/pdb/pdbfile.py:200: UserWarning: Unlikely unit cell vectors detected in PDB file likely resulting from a dummy CRYST1 record. Discarding unit cell vectors.
1381s     warnings.warn('Unlikely unit cell vectors detected in PDB file likely '
1381s 
1381s tests/test_arc.py: 1 warning
1381s tests/test_dihedral.py: 1 warning
1381s tests/test_geometry.py: 2 warnings
1381s tests/test_hdf5.py: 1 warning
1381s tests/test_lprmsd.py: 1 warning
1381s tests/test_mdconvert.py: 9 warnings
1381s tests/test_mol2.py: 1 warning
1381s tests/test_nmr.py: 1 warning
1381s tests/test_rmsd.py: 8 warnings
1381s tests/test_rmsd_memmap.py: 2 warnings
1381s tests/test_sasa.py: 3 warnings
1381s tests/test_topology.py: 2 warnings
1381s tests/test_trajectory.py: 85 warnings
1381s   /usr/lib/python3/dist-packages/mdtraj/core/trajectory.py:439: UserWarning: top= kwargs ignored since this file parser does not support it
1381s     warnings.warn('top= kwargs ignored since this file parser does not support it')
1381s 
1381s tests/test_contact.py::test_contact_0
1381s tests/test_contact.py::test_contact_4
1381s   /usr/lib/python3/dist-packages/mdtraj/geometry/contact.py:199: UserWarning: selected topology includes at least one glycine residue, which has no heavy atoms in its sidechain. The distances involving glycine residues will be computed using the sidechain hydrogen instead.
1381s     warnings.warn('selected topology includes at least one glycine residue, which has no heavy atoms in its sidechain. The distances involving glycine residues '
1381s 
1381s tests/test_contact.py::test_contact_3
1381s   /usr/lib/python3/dist-packages/mdtraj/geometry/contact.py:227: RuntimeWarning: overflow encountered in exp
1381s     np.log(np.sum(np.exp(soft_min_beta/
1381s 
1381s tests/test_contact.py::test_contact_3
1381s   /tmp/autopkgtest.DDZHGr/build.buw/src/tests/test_contact.py:106: RuntimeWarning: divide by zero encountered in divide
1381s     assert np.allclose(beta / np.log(np.sum(np.exp(beta / maps[t, r0, r1]))), dists[t, i])
1381s 
1381s tests/test_dcd.py::test_do_overwrite
1381s tests/test_dcd.py::test_ragged_1
1381s tests/test_dcd.py::test_ragged_2
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/validation.py:115: TypeCastPerformanceWarning: Casting xyz dtype=float64 to <class 'numpy.float32'> 
1381s     warnings.warn("Casting %s dtype=%s to %s " % (name, val.dtype, dtype),
1381s 
1381s tests/test_distance.py: 6 warnings
1381s tests/test_mdconvert.py: 112 warnings
1381s tests/test_neighbors.py: 2 warnings
1381s tests/test_netcdf.py: 46 warnings
1381s tests/test_rdf.py: 8 warnings
1381s tests/test_restart.py: 4 warnings
1381s tests/test_trajectory.py: 196 warnings
1381s   /usr/lib/python3/dist-packages/mdtraj/formats/netcdf.py:130: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
1381s     if StrictVersion(import_('scipy.version').short_version) < StrictVersion('0.12.0'):
1381s 
1381s tests/test_drid.py::test_drid_2
1381s   /tmp/autopkgtest.DDZHGr/build.buw/src/tests/test_drid.py:61: RuntimeWarning: divide by zero encountered in divide
1381s     recip = 1 / squareform(pdist(t.xyz[i]))
1381s 
1381s tests/test_geometry.py: 1 warning
1381s tests/test_hoomdxml.py: 1 warning
1381s tests/test_neighbors.py: 2 warnings
1381s tests/test_rdf.py: 38 warnings
1381s tests/test_selection.py: 73 warnings
1381s tests/test_topology.py: 17 warnings
1381s   /usr/lib/python3/dist-packages/mdtraj/core/selection.py:385: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
1381s     if isinstance(astnode, ast.Num) or isinstance(astnode, ast.Str):
1381s 
1381s tests/test_geometry.py: 2 warnings
1381s tests/test_hoomdxml.py: 1 warning
1381s tests/test_neighbors.py: 2 warnings
1381s tests/test_rdf.py: 38 warnings
1381s tests/test_selection.py: 73 warnings
1381s tests/test_topology.py: 17 warnings
1381s   /usr/lib/python3/dist-packages/mdtraj/core/selection.py:385: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead
1381s     if isinstance(astnode, ast.Num) or isinstance(astnode, ast.Str):
1381s 
1381s tests/test_geometry.py::test_dihedral_indices
1381s tests/test_geometry.py::test_dihedral_indices
1381s   /usr/lib/python3/dist-packages/mdtraj/geometry/dihedral.py:203: DeprecationWarning: Passing a Trajectory object to _atom_sequence isdeprecated. Please pass a Topology object
1381s     warnings.warn("Passing a Trajectory object to _atom_sequence is"
1381s 
1381s tests/test_gro.py::test_load
1381s tests/test_topology.py::test_topology_pandas_2residues_same_resSeq
1381s   /usr/lib/python3/dist-packages/mdtraj/formats/gro.py:322: UserWarning: WARNING: two consecutive residues with same number (GST, HST)
1381s     warnings.warn("WARNING: two consecutive residues with same number (%s, %s)" % (thisresname, old_resname))
1381s 
1381s tests/test_hdf5.py::test_read_0
1381s tests/test_hdf5.py::test_read_slice_0
1381s tests/test_hdf5.py::test_read_slice_2
1381s tests/test_hdf5.py::test_read_slice_3
1381s   /usr/lib/python3/dist-packages/tables/path.py:137: NaturalNameWarning: object name is a Python keyword: 'lambda'; you will not be able to use natural naming to access this object; using ``getattr()`` will still work, though
1381s     check_attribute_name(name)
1381s 
1381s tests/test_rdf.py: 7 warnings
1381s tests/test_selection.py: 14 warnings
1381s tests/test_topology.py: 5 warnings
1381s   /usr/lib/python3/dist-packages/mdtraj/core/selection.py:62: DeprecationWarning: ast.NameConstant is deprecated and will be removed in Python 3.14; use ast.Constant instead
1381s     return ast.NameConstant(value=_safe_names[node.id], kind=None)
1381s 
1381s tests/test_rdf.py: 32 warnings
1381s tests/test_selection.py: 23 warnings
1381s tests/test_topology.py: 12 warnings
1381s   /usr/lib/python3/dist-packages/mdtraj/core/selection.py:68: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead
1381s     return ast.Str(s=node.id, kind=None)
1381s 
1381s tests/test_rdf.py: 32 warnings
1381s tests/test_selection.py: 23 warnings
1381s tests/test_topology.py: 12 warnings
1381s   /usr/lib/python3.12/ast.py:587: DeprecationWarning: Attribute s is deprecated and will be removed in Python 3.14; use value instead
1381s     return Constant(*args, **kwargs)
1381s 
1381s tests/test_restart.py: 1014 warnings
1381s tests/test_trajectory.py: 12 warnings
1381s   /usr/lib/python3/dist-packages/mdtraj/formats/amberrst.py:465: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
1381s     if StrictVersion(import_('scipy.version').short_version) < StrictVersion('0.12.0'):
1381s 
1381s tests/test_trajectory.py::test_box_load_save[dtr]
1381s tests/test_trajectory.py::test_read_write[dcd-dtr]
1381s tests/test_trajectory.py::test_read_write[lammpstrj-dtr]
1381s tests/test_trajectory.py::test_read_write[pdb-dtr]
1381s tests/test_trajectory.py::test_read_write[pdb.gz-dtr]
1381s tests/test_trajectory.py::test_save_load[dtr]
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/validation.py:115: TypeCastPerformanceWarning: Casting times dtype=int64 to <class 'numpy.float64'> 
1381s     warnings.warn("Casting %s dtype=%s to %s " % (name, val.dtype, dtype),
1381s 
1381s tests/test_trajectory.py::test_write_path[dtr]
1381s tests/test_trajectory.py::test_read_write[h5-dtr]
1381s tests/test_trajectory.py::test_read_write[xtc-dtr]
1381s tests/test_trajectory.py::test_read_write[trr-dtr]
1381s tests/test_trajectory.py::test_read_write[tng-dtr]
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/validation.py:115: TypeCastPerformanceWarning: Casting times dtype=float32 to <class 'numpy.float64'> 
1381s     warnings.warn("Casting %s dtype=%s to %s " % (name, val.dtype, dtype),
1381s 
1381s tests/test_trajectory.py::test_read_write[nc-dtr]
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/validation.py:115: TypeCastPerformanceWarning: Casting times dtype=>f4 to <class 'numpy.float64'> 
1381s     warnings.warn("Casting %s dtype=%s to %s " % (name, val.dtype, dtype),
1381s 
1381s tests/test_trajectory.py::test_float_atom_indices_exception[gro]
1381s   /usr/lib/python3/dist-packages/mdtraj/core/topology.py:91: UserWarning: atom_indices are not monotonically increasing
1381s     warnings.warn('atom_indices are not monotonically increasing')
1381s 
1381s tests/test_trajectory.py::test_array_vs_matrix
1381s   /tmp/autopkgtest.DDZHGr/build.buw/src/tests/test_trajectory.py:352: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
1381s     xyz_mat = np.matrix(xyz)
1381s 
1381s tests/test_utils.py::test_ensure_type_8
1381s tests/test_utils.py::test_ensure_type_9
1381s tests/test_utils.py::test_ensure_type_13
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/validation.py:115: TypeCastPerformanceWarning: Casting  dtype=float64 to <class 'numpy.float32'> 
1381s     warnings.warn("Casting %s dtype=%s to %s " % (name, val.dtype, dtype),
1381s 
1381s tests/test_utils.py::test_ensure_type_11
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/validation.py:115: TypeCastPerformanceWarning: Casting  dtype=int64 to <class 'numpy.float32'> 
1381s     warnings.warn("Casting %s dtype=%s to %s " % (name, val.dtype, dtype),
1381s 
1381s tests/test_utils.py::test_unit_3
1381s tests/test_utils.py::test_unit_3
1381s   /usr/lib/python3/dist-packages/mdtraj/utils/unit/__init__.py:60: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
1381s     if not any(isinstance(node, a) for a in self.allowed_ops):
1381s 
1381s examples/test_examples.py::test_example_notebook[rmsd-drift.ipynb]
1381s   /usr/lib/python3/dist-packages/jupyter_client/utils.py:18: DeprecationWarning: There is no current event loop
1381s     loop = asyncio.get_event_loop_policy().get_event_loop()
1381s 
1381s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
1381s =========================== short test summary info ============================
1381s SKIPPED [1] tests/test_dihedral.py:48: pymol executable not found
1381s SKIPPED [1] tests/test_dihedral.py:149: pymol executable not found
1381s SKIPPED [16] tests/test_docstrings.py:36: Skip checking certain modules' docstrings
1381s SKIPPED [1] tests/test_dssp.py:44: This test requires mkdssp to be installed, from http://swift.cmbi.ru.nl/gv/dssp/
1381s SKIPPED [1] tests/test_dssp.py:52: This test requires mkdssp to be installed, from http://swift.cmbi.ru.nl/gv/dssp/
1381s SKIPPED [1] tests/test_dssp.py:59: This test requires mkdssp to be installed, from http://swift.cmbi.ru.nl/gv/dssp/
1381s SKIPPED [1] tests/test_geometry.py:243: Not doing performance testing
1381s SKIPPED [1] tests/test_geometry.py:261: Not doing performance testing
1381s SKIPPED [1] tests/test_gsd.py:30: gsd module is not available
1381s SKIPPED [1] tests/test_gsd.py:41: gsd module is not available
1381s SKIPPED [1] tests/test_gsd.py:51: gsd module is not available
1381s SKIPPED [1] tests/test_gsd.py:61: gsd module is not available
1381s SKIPPED [1] tests/test_gsd.py:75: gsd module is not available
1381s SKIPPED [1] tests/test_gsd.py:82: gsd module is not available
1381s SKIPPED [1] tests/test_gsd.py:94: gsd module is not available
1381s SKIPPED [1] tests/test_hbonds.py:43: This test requires mkdssp to be installed, from http://swift.cmbi.ru.nl/gv/dssp/
1381s SKIPPED [1] tests/test_hdf5.py:99: requires openmm.units
1381s SKIPPED [1] tests/test_hdf5.py:133: requires openmm.units
1381s SKIPPED [1] tests/test_hdf5.py:186: requires openmm.units
1381s SKIPPED [1] tests/test_mol2.py:55: Requires obabel
1381s SKIPPED [1] tests/test_netcdf.py:248: This test requires cpptraj from AmberTools to be installed (http://ambermd.org)
1381s SKIPPED [1] tests/test_nmr.py:11: SPARTA+ binary not found
1381s SKIPPED [1] tests/test_nmr.py:24: PPM binary not found
1381s SKIPPED [1] tests/test_nmr.py:38: SHIFTX2 binary not found or Python 2 not found or runningn on travis.
1381s SKIPPED [1] tests/test_pdbx.py:39: test_pdbx.py needs OpenMM.
1381s SKIPPED [2] tests/test_psf.py:92: This test requires the VMD executable: http://www.ks.uiuc.edu/Research/vmd/
1381s SKIPPED [1] tests/test_rdf.py:66: Binning does not match up with gromacs currently.
1381s SKIPPED [1] tests/test_rdf.py:153: Binning does not match up with gromacs currently.
1381s SKIPPED [1] tests/test_reporter.py:47: test_reporter.py needs OpenMM.
1381s SKIPPED [1] tests/test_reporter.py:121: test_reporter.py needs OpenMM.
1381s SKIPPED [1] tests/test_reporter.py:201: test_reporter.py needs OpenMM.
1381s SKIPPED [1] tests/test_thermodynamic_properties.py:154: Thermal expansion test doesn't work.
1381s SKIPPED [1] tests/test_tng.py:20: Fails on macOS + Python 3.11, need to investigate.
1381s SKIPPED [1] tests/test_topology.py:42: needs OpenMM
1381s SKIPPED [1] tests/test_topology.py:59: needs OpenMM
1381s SKIPPED [1] tests/test_topology.py:187: needs OpenMM
1381s SKIPPED [1] tests/test_trajectory.py:128: binpos does not store box information
1381s SKIPPED [1] tests/test_trajectory.py:128: xyz does not store box information
1381s SKIPPED [1] tests/test_trajectory.py:128: xyz.gz does not store box information
1381s SKIPPED [1] tests/test_trajectory.py:128: lh5 does not store box information
1381s SKIPPED [1] tests/test_trajectory.py:128: pdb does not store box information
1381s SKIPPED [1] tests/test_trajectory.py:128: pdb.gz does not store box information
1381s SKIPPED [1] tests/test_trajectory.py:200: mdcrd can only store rectilinear boxes
1381s SKIPPED [1] tests/test_trajectory.py:198: ncrst can only store 1 frame per file
1381s SKIPPED [1] tests/test_trajectory.py:198: rst7 can only store 1 frame per file
1381s SKIPPED [16] tests/test_trajectory.py:212: mdcrd can only store rectilinear boxes
1381s SKIPPED [16] tests/test_trajectory.py:210: ncrst can only store 1 frame per file
1381s SKIPPED [16] tests/test_trajectory.py:210: rst7 can only store 1 frame per file
1381s SKIPPED [5] tests/test_trajectory.py:219: dtr needs to write unitcells
1381s SKIPPED [5] tests/test_trajectory.py:219: lammpstrj needs to write unitcells
1381s SKIPPED [2] tests/test_trajectory.py:541: Only 1 frame per file format
1381s SKIPPED [1] examples/test_examples.py:71: Openmm required for example notebook `simulation-with-openmm.ipynb`
1381s SKIPPED [2] examples/test_examples.py:71: Network access required
1381s XFAIL tests/test_trajectory.py::test_read_path[ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_path[rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-nc] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-h5] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-xtc] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-trr] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-dcd] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-mdcrd] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-binpos] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-dtr] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-xyz] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-xyz.gz] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-lammpstrj] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-tng] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-lh5] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-pdb] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-pdb.gz] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[ncrst-gro] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-nc] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-h5] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-xtc] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-trr] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-dcd] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-mdcrd] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-binpos] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-dtr] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-xyz] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-xyz.gz] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-lammpstrj] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-tng] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-lh5] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-pdb] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-pdb.gz] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_read_write[rst7-gro] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_load[ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_load[rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_float_atom_indices_exception[ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_float_atom_indices_exception[rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_load_combination[ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_load_combination[rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_seek_read_mode[xyz.gz] - reason: This is broken
1381s XFAIL tests/test_trajectory.py::test_seek_read_mode[pdb] - reason: PDB Files don't support seeking
1381s XFAIL tests/test_trajectory.py::test_seek_read_mode[pdb.gz] - reason: PDB Files don't support seeking
1381s XFAIL tests/test_trajectory.py::test_seek_read_mode[ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_seek_read_mode[rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_seek_read_mode[gro] - reason: This is broken
1381s XFAIL tests/test_trajectory.py::test_load_frame[dtr] - reason: DTR doesn't load a single frame properly
1381s XFAIL tests/test_trajectory.py::test_load_frame[ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_load_frame[rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_load_frame[gro] - reason: Gro doesn't implement seek
1381s XFAIL tests/test_trajectory.py::test_iterload[dtr] - reason: This is broken with dtr
1381s XFAIL tests/test_trajectory.py::test_iterload_skip[pdb] - reason: PDB Iterloads an extra frame!!
1381s XFAIL tests/test_trajectory.py::test_iterload_skip[pdb.gz] - reason: PDB Iterloads an extra frame!!
1381s XFAIL tests/test_trajectory.py::test_iterload_skip[ncrst] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_iterload_skip[rst7] - reason: These reference files don't exist yet
1381s XFAIL tests/test_trajectory.py::test_iterload_skip[gro] - reason: Not implemented for some reason
1381s XFAIL tests/test_trajectory.py::test_force_overwrite[dtr] - reason: This is broken with dtr
1381s XFAIL tests/test_trajectory.py::test_unitcell[dtr] - reason: dtr seems to need unit vectors
1381s XFAIL tests/test_trajectory.py::test_unitcell[lammpstrj] - reason: lammpstrj seems to need unit vectors
1381s XFAIL tests/test_trajectory.py::test_unitcell[ncrst] - reason: ncrst seems to need unit vectors
1381s XFAIL tests/test_trajectory.py::test_unitcell[rst7] - reason: rst7 seems to need unit vectors
1381s = 1030 passed, 124 skipped, 2 deselected, 65 xfailed, 2006 warnings in 364.70s (0:06:04) =
1382s autopkgtest [16:01:24]: test command1: -----------------------]
1383s autopkgtest [16:01:25]: test command1:  - - - - - - - - - - results - - - - - - - - - -
1383s command1             PASS
1383s autopkgtest [16:01:25]: @@@@@@@@@@@@@@@@@@@@ summary
1383s command1             PASS