0s autopkgtest [16:55:54]: starting date and time: 2024-03-24 16:55:54+0000
  0s autopkgtest [16:55:54]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [16:55:54]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.etl2k43s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-45.secgroup --name adt-noble-arm64-mcaller-20240324-165554-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
100s autopkgtest [16:57:34]: testbed dpkg architecture: arm64
100s autopkgtest [16:57:34]: testbed apt version: 2.7.12
100s autopkgtest [16:57:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup
101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB]
103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB]
103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB]
103s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB]
103s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
103s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB]
103s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
103s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB]
103s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
103s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB]
103s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
109s Fetched 9850 kB in 3s (3283 kB/s)
110s Reading package lists...
114s Reading package lists...
115s Building dependency tree...
115s Reading state information...
116s Calculating upgrade...
117s The following packages will be REMOVED:
117s   libssl3
117s The following NEW packages will be installed:
117s   libssl3t64
117s The following packages have been kept back:
117s   curl
117s The following packages will be upgraded:
117s   openssl
117s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
117s Need to get 2777 kB of archives.
117s After this operation, 139 kB of additional disk space will be used.
117s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB]
118s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB]
119s Fetched 2777 kB in 1s (2155 kB/s)
119s (Reading database ... 
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(Reading database ... 75911 files and directories currently installed.)
119s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ...
119s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
119s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
119s  wget depends on libssl3 (>= 3.0.0).
119s  u-boot-tools depends on libssl3 (>= 3.0.0).
119s  tnftp depends on libssl3 (>= 3.0.0).
119s  tcpdump depends on libssl3 (>= 3.0.0).
119s  systemd-resolved depends on libssl3 (>= 3.0.0).
120s  systemd depends on libssl3 (>= 3.0.0).
120s  sudo depends on libssl3 (>= 3.0.0).
120s  sbsigntool depends on libssl3 (>= 3.0.0).
120s  rsync depends on libssl3 (>= 3.0.0).
120s  python3-cryptography depends on libssl3 (>= 3.0.0).
120s  openssh-server depends on libssl3 (>= 3.0.10).
120s  openssh-client depends on libssl3 (>= 3.0.10).
120s  mtd-utils depends on libssl3 (>= 3.0.0).
120s  mokutil depends on libssl3 (>= 3.0.0).
120s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
120s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
120s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
120s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
120s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
120s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
120s  libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0).
120s  libnvme1 depends on libssl3 (>= 3.0.0).
120s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
120s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
120s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
120s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
120s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
120s  kmod depends on libssl3 (>= 3.0.0).
120s  dhcpcd-base depends on libssl3 (>= 3.0.0).
120s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
120s 
120s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75911 files and directories currently installed.)
120s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
120s Selecting previously unselected package libssl3t64:arm64.
120s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75900 files and directories currently installed.)
120s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ...
120s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ...
120s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ...
120s Setting up openssl (3.0.13-0ubuntu2) ...
120s Processing triggers for man-db (2.12.0-3) ...
121s Processing triggers for libc-bin (2.39-0ubuntu6) ...
121s Reading package lists...
122s Building dependency tree...
122s Reading state information...
123s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
124s sh: Attempting to set up Debian/Ubuntu apt sources automatically
124s sh: Distribution appears to be Ubuntu
126s Reading package lists...
126s Building dependency tree...
126s Reading state information...
128s eatmydata is already the newest version (131-1).
128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
130s dbus is already the newest version (1.14.10-4ubuntu1).
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
132s rng-tools-debian is already the newest version (2.4).
132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
132s Reading package lists...
132s Building dependency tree...
132s Reading state information...
133s The following packages will be REMOVED:
133s   cloud-init* python3-configobj* python3-debconf*
134s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
134s After this operation, 3256 kB disk space will be freed.
134s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75913 files and directories currently installed.)
134s Removing cloud-init (24.1.2-0ubuntu1) ...
135s Removing python3-configobj (5.0.8-3) ...
136s Removing python3-debconf (1.5.86) ...
136s Processing triggers for man-db (2.12.0-3) ...
136s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75524 files and directories currently installed.)
136s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
138s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
138s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
138s invoke-rc.d: policy-rc.d denied execution of try-restart.
138s Reading package lists...
139s Building dependency tree...
139s Reading state information...
140s linux-generic is already the newest version (6.8.0-11.11+1).
140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
141s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
141s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
141s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
147s Reading package lists...
147s Reading package lists...
147s Building dependency tree...
147s Reading state information...
148s Calculating upgrade...
150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
150s Reading package lists...
150s Building dependency tree...
150s Reading state information...
151s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
151s autopkgtest [16:58:25]: rebooting testbed after setup commands that affected boot
314s autopkgtest [17:01:08]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
317s autopkgtest [17:01:11]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller
321s Get:1 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B]
321s Get:2 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB]
321s Get:3 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B]
322s gpgv: Signature made Wed Apr 27 22:26:52 2022 UTC
322s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
322s gpgv:                issuer "emollier@debian.org"
322s gpgv: Can't check signature: No public key
322s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found
322s autopkgtest [17:01:16]: testing package mcaller version 1.0.3+git20210624.b415090-3
323s autopkgtest [17:01:17]: build not needed
324s autopkgtest [17:01:18]: test run-unit-test: preparing testbed
329s Reading package lists...
330s Building dependency tree...
330s Reading state information...
331s Starting pkgProblemResolver with broken count: 0
331s Starting 2 pkgProblemResolver with broken count: 0
331s Done
332s The following additional packages will be installed:
332s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono
332s   fonts-lyx fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0
332s   libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3
332s   libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhts3 libhtscodecs2
332s   libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui
332s   liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpixman-1-0
332s   libqhull-r8.0 libraqm0 libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6
332s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2
332s   libxrender1 libxslt1.1 libxss1 mcaller python-matplotlib-data
332s   python3-appdirs python3-biopython python3-brotli python3-cairo
332s   python3-contourpy python3-cycler python3-dateutil python3-decorator
332s   python3-fonttools python3-freetype python3-fs python3-h5py
332s   python3-h5py-serial python3-joblib python3-kiwisolver python3-lxml
332s   python3-lz4 python3-matplotlib python3-mpmath python3-numpy
332s   python3-packaging python3-pandas python3-pandas-lib python3-pil
332s   python3-pil.imagetk python3-pysam python3-reportlab python3-rlpycairo
332s   python3-scipy python3-seaborn python3-sklearn python3-sklearn-lib
332s   python3-sympy python3-threadpoolctl python3-tk python3-ufolib2
332s   python3-unicodedata2 sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib
332s   x11-common xfonts-encodings xfonts-utils xml-core
332s Suggested packages:
332s   blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre
332s   libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 graphmap bwa clustalo
332s   clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank
332s   probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml
332s   samtools t-coffee wise python-cycler-doc python-h5py-doc python-lxml-doc
332s   cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
332s   inkscape ipython3 librsvg2-common python3-cairocffi python3-gi-cairo
332s   python3-gobject python3-pyqt5 python3-sip python3-tornado
332s   texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc
332s   gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels
332s   python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc
332s   rl-accel rl-renderpm python-scipy-doc python3-dap python-sklearn-doc
332s   texlive-fonts-extra python-sympy-doc tix python3-tk-dbg sgml-base-doc
332s   debhelper
332s Recommended packages:
332s   javascript-common nanopolish | poretools python-biopython-doc ncbi-blast+
332s   python3-pytest python3-simplejson python3-psutil python3-bs4
332s   python3-cssselect python3-html5lib python3-bottleneck python3-numexpr
332s   python3-odf python3-openpyxl python3-tables python3-olefile g++
332s   | c++-compiler python3-patsy isympy-common
332s The following NEW packages will be installed:
332s   autopkgtest-satdep blt fontconfig-config fonts-dejavu-core
332s   fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 libaec0
332s   libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5
332s   libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhts3
332s   libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery
332s   libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1
332s   libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0 libsz2
332s   libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3
332s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 mcaller
332s   python-matplotlib-data python3-appdirs python3-biopython python3-brotli
332s   python3-cairo python3-contourpy python3-cycler python3-dateutil
332s   python3-decorator python3-fonttools python3-freetype python3-fs python3-h5py
332s   python3-h5py-serial python3-joblib python3-kiwisolver python3-lxml
332s   python3-lz4 python3-matplotlib python3-mpmath python3-numpy
332s   python3-packaging python3-pandas python3-pandas-lib python3-pil
332s   python3-pil.imagetk python3-pysam python3-reportlab python3-rlpycairo
332s   python3-scipy python3-seaborn python3-sklearn python3-sklearn-lib
332s   python3-sympy python3-threadpoolctl python3-tk python3-ufolib2
332s   python3-unicodedata2 sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib
332s   x11-common xfonts-encodings xfonts-utils xml-core
332s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
332s Need to get 107 MB/107 MB of archives.
332s After this operation, 511 MB of additional disk space will be used.
332s Get:1 /tmp/autopkgtest.tj658c/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B]
333s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB]
333s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
333s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
333s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
333s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.8-1 [13.9 kB]
333s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
333s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
333s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-utils arm64 1:7.7+6build2 [93.6 kB]
334s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB]
335s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
335s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
335s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
335s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
335s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
335s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB]
335s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [618 kB]
335s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 blt arm64 2.5.3+dfsg-7 [4826 B]
335s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-extra all 2.37-8 [1947 kB]
335s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lyx all 2.4.0~RC3-1 [170 kB]
335s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB]
335s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
335s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
335s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
335s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
335s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
335s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
336s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
336s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
336s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
336s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
336s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B]
336s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB]
336s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB]
336s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB]
336s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB]
336s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB]
336s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
336s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
336s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
336s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
336s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
336s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB]
336s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB]
336s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
336s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
336s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB]
336s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB]
336s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
336s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
336s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
336s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
336s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB]
336s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB]
336s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.39-0exp1 [166 kB]
336s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-joblib all 1.3.2-1 [207 kB]
336s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB]
336s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
336s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB]
337s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
337s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn-lib arm64 1.4.1.post1+dfsg-1 [6663 kB]
337s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB]
337s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py-serial arm64 3.10.0-1ubuntu1 [1462 kB]
337s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-h5py all 3.10.0-1ubuntu1 [7970 B]
337s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tk arm64 3.11.5-1 [112 kB]
337s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pil.imagetk arm64 10.2.0-1 [9708 B]
337s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB]
337s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB]
337s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2 [153 kB]
337s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB]
337s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B]
337s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-1 [683 kB]
338s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB]
338s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB]
338s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.81+dfsg-3 [1664 kB]
338s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB]
338s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB]
338s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-contourpy arm64 1.0.7-1build2 [244 kB]
338s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cycler all 0.11.0-2 [8202 B]
338s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-brotli arm64 1.1.0-2 [345 kB]
338s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
338s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mpmath all 1.2.1-3 [421 kB]
338s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sympy all 1.12-7 [3966 kB]
338s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB]
338s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fs all 2.4.16-3 [91.1 kB]
338s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.1.0-1 [2042 kB]
338s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build2 [28.4 kB]
338s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1 [362 kB]
338s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 unicode-data all 15.1.0-1 [8878 kB]
338s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fonttools arm64 4.46.0-1 [1625 kB]
338s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-kiwisolver arm64 1.4.4-2 [48.5 kB]
338s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB]
338s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib arm64 3.6.3-1ubuntu3 [7291 kB]
338s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB]
339s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
339s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-seaborn all 0.13.2-2 [225 kB]
339s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB]
339s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 mcaller all 1.0.3+git20210624.b415090-3 [19.3 kB]
340s Fetched 107 MB in 6s (16.9 MB/s)
340s Selecting previously unselected package sgml-base.
340s (Reading database ... 
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340s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
340s Unpacking sgml-base (1.31) ...
340s Selecting previously unselected package libtcl8.6:arm64.
340s Preparing to unpack .../01-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
340s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
341s Selecting previously unselected package fonts-dejavu-mono.
341s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ...
341s Unpacking fonts-dejavu-mono (2.37-8) ...
341s Selecting previously unselected package fonts-dejavu-core.
341s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ...
341s Unpacking fonts-dejavu-core (2.37-8) ...
341s Selecting previously unselected package libfontenc1:arm64.
341s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1_arm64.deb ...
341s Unpacking libfontenc1:arm64 (1:1.1.8-1) ...
341s Selecting previously unselected package x11-common.
341s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu2_all.deb ...
341s Unpacking x11-common (1:7.7+23ubuntu2) ...
341s Selecting previously unselected package xfonts-encodings.
341s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
341s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
341s Selecting previously unselected package xfonts-utils.
341s Preparing to unpack .../07-xfonts-utils_1%3a7.7+6build2_arm64.deb ...
341s Unpacking xfonts-utils (1:7.7+6build2) ...
341s Selecting previously unselected package fonts-urw-base35.
341s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ...
341s Unpacking fonts-urw-base35 (20200910-8) ...
341s Selecting previously unselected package fontconfig-config.
341s Preparing to unpack .../09-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
342s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
342s Selecting previously unselected package libfontconfig1:arm64.
342s Preparing to unpack .../10-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
342s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
342s Selecting previously unselected package libxrender1:arm64.
342s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
342s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
342s Selecting previously unselected package libxft2:arm64.
342s Preparing to unpack .../12-libxft2_2.3.6-1_arm64.deb ...
342s Unpacking libxft2:arm64 (2.3.6-1) ...
342s Selecting previously unselected package libxss1:arm64.
342s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build2_arm64.deb ...
342s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
342s Selecting previously unselected package libtk8.6:arm64.
342s Preparing to unpack .../14-libtk8.6_8.6.14-1_arm64.deb ...
342s Unpacking libtk8.6:arm64 (8.6.14-1) ...
342s Selecting previously unselected package tk8.6-blt2.5.
342s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7_arm64.deb ...
342s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ...
342s Selecting previously unselected package blt.
342s Preparing to unpack .../16-blt_2.5.3+dfsg-7_arm64.deb ...
342s Unpacking blt (2.5.3+dfsg-7) ...
342s Selecting previously unselected package fonts-dejavu-extra.
342s Preparing to unpack .../17-fonts-dejavu-extra_2.37-8_all.deb ...
342s Unpacking fonts-dejavu-extra (2.37-8) ...
342s Selecting previously unselected package fonts-lyx.
342s Preparing to unpack .../18-fonts-lyx_2.4.0~RC3-1_all.deb ...
342s Unpacking fonts-lyx (2.4.0~RC3-1) ...
342s Selecting previously unselected package libaec0:arm64.
342s Preparing to unpack .../19-libaec0_1.1.2-1_arm64.deb ...
342s Unpacking libaec0:arm64 (1.1.2-1) ...
342s Selecting previously unselected package libblas3:arm64.
342s Preparing to unpack .../20-libblas3_3.12.0-3_arm64.deb ...
342s Unpacking libblas3:arm64 (3.12.0-3) ...
343s Selecting previously unselected package libpixman-1-0:arm64.
343s Preparing to unpack .../21-libpixman-1-0_0.42.2-1_arm64.deb ...
343s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
343s Selecting previously unselected package libxcb-render0:arm64.
343s Preparing to unpack .../22-libxcb-render0_1.15-1_arm64.deb ...
343s Unpacking libxcb-render0:arm64 (1.15-1) ...
343s Selecting previously unselected package libxcb-shm0:arm64.
343s Preparing to unpack .../23-libxcb-shm0_1.15-1_arm64.deb ...
343s Unpacking libxcb-shm0:arm64 (1.15-1) ...
343s Selecting previously unselected package libcairo2:arm64.
343s Preparing to unpack .../24-libcairo2_1.18.0-1_arm64.deb ...
343s Unpacking libcairo2:arm64 (1.18.0-1) ...
343s Selecting previously unselected package libdeflate0:arm64.
343s Preparing to unpack .../25-libdeflate0_1.19-1_arm64.deb ...
343s Unpacking libdeflate0:arm64 (1.19-1) ...
343s Selecting previously unselected package libgfortran5:arm64.
343s Preparing to unpack .../26-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
343s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
343s Selecting previously unselected package libgomp1:arm64.
343s Preparing to unpack .../27-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
343s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
343s Selecting previously unselected package libgraphite2-3:arm64.
343s Preparing to unpack .../28-libgraphite2-3_1.3.14-2_arm64.deb ...
343s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
343s Selecting previously unselected package libharfbuzz0b:arm64.
343s Preparing to unpack .../29-libharfbuzz0b_8.3.0-2_arm64.deb ...
343s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
343s Selecting previously unselected package libsz2:arm64.
343s Preparing to unpack .../30-libsz2_1.1.2-1_arm64.deb ...
343s Unpacking libsz2:arm64 (1.1.2-1) ...
343s Selecting previously unselected package libhdf5-103-1:arm64.
343s Preparing to unpack .../31-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ...
343s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ...
343s Selecting previously unselected package libhdf5-hl-100:arm64.
343s Preparing to unpack .../32-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ...
343s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ...
343s Selecting previously unselected package libhtscodecs2:arm64.
343s Preparing to unpack .../33-libhtscodecs2_1.6.0-1_arm64.deb ...
343s Unpacking libhtscodecs2:arm64 (1.6.0-1) ...
343s Selecting previously unselected package libhts3:arm64.
343s Preparing to unpack .../34-libhts3_1.18+ds-1_arm64.deb ...
343s Unpacking libhts3:arm64 (1.18+ds-1) ...
343s Selecting previously unselected package libimagequant0:arm64.
343s Preparing to unpack .../35-libimagequant0_2.18.0-1_arm64.deb ...
343s Unpacking libimagequant0:arm64 (2.18.0-1) ...
343s Selecting previously unselected package libjpeg-turbo8:arm64.
344s Preparing to unpack .../36-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
344s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
344s Selecting previously unselected package libjpeg8:arm64.
344s Preparing to unpack .../37-libjpeg8_8c-2ubuntu11_arm64.deb ...
344s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
344s Selecting previously unselected package libjs-jquery.
344s Preparing to unpack .../38-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
344s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
344s Selecting previously unselected package libjs-jquery-ui.
344s Preparing to unpack .../39-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
344s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
344s Selecting previously unselected package liblapack3:arm64.
344s Preparing to unpack .../40-liblapack3_3.12.0-3_arm64.deb ...
344s Unpacking liblapack3:arm64 (3.12.0-3) ...
344s Selecting previously unselected package liblbfgsb0:arm64.
344s Preparing to unpack .../41-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ...
344s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ...
344s Selecting previously unselected package liblcms2-2:arm64.
344s Preparing to unpack .../42-liblcms2-2_2.14-2_arm64.deb ...
344s Unpacking liblcms2-2:arm64 (2.14-2) ...
344s Selecting previously unselected package liblerc4:arm64.
344s Preparing to unpack .../43-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
344s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
344s Selecting previously unselected package liblzf1:arm64.
344s Preparing to unpack .../44-liblzf1_3.6-4_arm64.deb ...
344s Unpacking liblzf1:arm64 (3.6-4) ...
344s Selecting previously unselected package libqhull-r8.0:arm64.
344s Preparing to unpack .../45-libqhull-r8.0_2020.2-6_arm64.deb ...
344s Unpacking libqhull-r8.0:arm64 (2020.2-6) ...
344s Selecting previously unselected package libraqm0:arm64.
344s Preparing to unpack .../46-libraqm0_0.10.1-1_arm64.deb ...
344s Unpacking libraqm0:arm64 (0.10.1-1) ...
344s Selecting previously unselected package libsharpyuv0:arm64.
344s Preparing to unpack .../47-libsharpyuv0_1.3.2-0.4_arm64.deb ...
344s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
344s Selecting previously unselected package libjbig0:arm64.
344s Preparing to unpack .../48-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
344s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
344s Selecting previously unselected package libwebp7:arm64.
344s Preparing to unpack .../49-libwebp7_1.3.2-0.4_arm64.deb ...
344s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
345s Selecting previously unselected package libtiff6:arm64.
345s Preparing to unpack .../50-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
345s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
345s Selecting previously unselected package libwebpdemux2:arm64.
345s Preparing to unpack .../51-libwebpdemux2_1.3.2-0.4_arm64.deb ...
345s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ...
345s Selecting previously unselected package libwebpmux3:arm64.
345s Preparing to unpack .../52-libwebpmux3_1.3.2-0.4_arm64.deb ...
345s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ...
345s Selecting previously unselected package libxslt1.1:arm64.
345s Preparing to unpack .../53-libxslt1.1_1.1.39-0exp1_arm64.deb ...
345s Unpacking libxslt1.1:arm64 (1.1.39-0exp1) ...
345s Selecting previously unselected package python3-joblib.
345s Preparing to unpack .../54-python3-joblib_1.3.2-1_all.deb ...
345s Unpacking python3-joblib (1.3.2-1) ...
345s Selecting previously unselected package python3-numpy.
345s Preparing to unpack .../55-python3-numpy_1%3a1.24.2-2_arm64.deb ...
345s Unpacking python3-numpy (1:1.24.2-2) ...
345s Selecting previously unselected package python3-decorator.
345s Preparing to unpack .../56-python3-decorator_5.1.1-5_all.deb ...
345s Unpacking python3-decorator (5.1.1-5) ...
346s Selecting previously unselected package python3-scipy.
346s Preparing to unpack .../57-python3-scipy_1.11.4-6_arm64.deb ...
346s Unpacking python3-scipy (1.11.4-6) ...
347s Selecting previously unselected package python3-threadpoolctl.
347s Preparing to unpack .../58-python3-threadpoolctl_3.1.0-1_all.deb ...
347s Unpacking python3-threadpoolctl (3.1.0-1) ...
347s Selecting previously unselected package python3-sklearn-lib:arm64.
347s Preparing to unpack .../59-python3-sklearn-lib_1.4.1.post1+dfsg-1_arm64.deb ...
347s Unpacking python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ...
348s Selecting previously unselected package python3-sklearn.
348s Preparing to unpack .../60-python3-sklearn_1.4.1.post1+dfsg-1_all.deb ...
348s Unpacking python3-sklearn (1.4.1.post1+dfsg-1) ...
348s Selecting previously unselected package python3-h5py-serial.
348s Preparing to unpack .../61-python3-h5py-serial_3.10.0-1ubuntu1_arm64.deb ...
348s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ...
348s Selecting previously unselected package python3-h5py.
348s Preparing to unpack .../62-python3-h5py_3.10.0-1ubuntu1_all.deb ...
348s Unpacking python3-h5py (3.10.0-1ubuntu1) ...
348s Selecting previously unselected package python3-tk:arm64.
348s Preparing to unpack .../63-python3-tk_3.11.5-1_arm64.deb ...
348s Unpacking python3-tk:arm64 (3.11.5-1) ...
348s Selecting previously unselected package python3-pil.imagetk:arm64.
348s Preparing to unpack .../64-python3-pil.imagetk_10.2.0-1_arm64.deb ...
348s Unpacking python3-pil.imagetk:arm64 (10.2.0-1) ...
348s Selecting previously unselected package libopenjp2-7:arm64.
348s Preparing to unpack .../65-libopenjp2-7_2.5.0-2_arm64.deb ...
348s Unpacking libopenjp2-7:arm64 (2.5.0-2) ...
348s Selecting previously unselected package python3-pil:arm64.
349s Preparing to unpack .../66-python3-pil_10.2.0-1_arm64.deb ...
349s Unpacking python3-pil:arm64 (10.2.0-1) ...
349s Selecting previously unselected package python3-cairo.
349s Preparing to unpack .../67-python3-cairo_1.25.1-2_arm64.deb ...
349s Unpacking python3-cairo (1.25.1-2) ...
349s Selecting previously unselected package python3-freetype.
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349s Unpacking python3-freetype (2.4.0-1) ...
349s Selecting previously unselected package python3-rlpycairo.
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349s Unpacking python3-rlpycairo (0.3.0-3) ...
349s Selecting previously unselected package python3-reportlab.
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349s Selecting previously unselected package xml-core.
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349s Selecting previously unselected package w3c-sgml-lib.
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349s Unpacking w3c-sgml-lib (1.3-3) ...
349s Selecting previously unselected package python3-biopython.
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350s Selecting previously unselected package python-matplotlib-data.
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350s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ...
350s Selecting previously unselected package python3-dateutil.
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350s Unpacking python3-dateutil (2.8.2-3) ...
350s Selecting previously unselected package python3-contourpy.
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350s Unpacking python3-contourpy (1.0.7-1build2) ...
350s Selecting previously unselected package python3-cycler.
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350s Unpacking python3-cycler (0.11.0-2) ...
350s Selecting previously unselected package python3-brotli.
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350s Unpacking python3-brotli (1.1.0-2) ...
350s Selecting previously unselected package python3-ufolib2.
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350s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
350s Selecting previously unselected package python3-mpmath.
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351s Selecting previously unselected package python3-appdirs.
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351s Selecting previously unselected package python3-lxml:arm64.
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355s Setting up libhtscodecs2:arm64 (1.6.0-1) ...
355s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
355s Setting up liblcms2-2:arm64 (2.14-2) ...
355s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
355s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
355s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
355s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
355s Setting up python3-joblib (1.3.2-1) ...
356s Setting up python3-lz4 (4.0.2+dfsg-1build2) ...
356s Setting up libxcb-render0:arm64 (1.15-1) ...
357s Setting up python3-unicodedata2 (15.1.0+ds-1) ...
357s Setting up fonts-lyx (2.4.0~RC3-1) ...
357s Setting up python3-threadpoolctl (3.1.0-1) ...
357s Setting up x11-common (1:7.7+23ubuntu2) ...
358s Setting up libdeflate0:arm64 (1.19-1) ...
358s Setting up libqhull-r8.0:arm64 (2020.2-6) ...
358s Setting up libxcb-shm0:arm64 (1.15-1) ...
358s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
358s Setting up python3-freetype (2.4.0-1) ...
359s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
359s Setting up libaec0:arm64 (1.1.2-1) ...
359s Setting up unicode-data (15.1.0-1) ...
359s Setting up python3-decorator (5.1.1-5) ...
359s Setting up libfontenc1:arm64 (1:1.1.8-1) ...
359s Setting up libblas3:arm64 (3.12.0-3) ...
359s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
359s Setting up python3-packaging (23.2-1) ...
360s Setting up python3-brotli (1.1.0-2) ...
360s Setting up liblzf1:arm64 (3.6-4) ...
360s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
360s Setting up python3-cycler (0.11.0-2) ...
360s Setting up libimagequant0:arm64 (2.18.0-1) ...
361s Setting up fonts-dejavu-mono (2.37-8) ...
361s Setting up python3-kiwisolver (1.4.4-2) ...
361s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
361s Setting up fonts-dejavu-core (2.37-8) ...
361s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
361s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
361s Setting up libwebp7:arm64 (1.3.2-0.4) ...
361s Setting up fonts-dejavu-extra (2.37-8) ...
361s Setting up libxslt1.1:arm64 (1.1.39-0exp1) ...
361s Setting up libopenjp2-7:arm64 (2.5.0-2) ...
361s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
361s Setting up python3-dateutil (2.8.2-3) ...
361s Setting up sgml-base (1.31) ...
361s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
361s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
362s Setting up python3-mpmath (1.2.1-3) ...
363s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ...
363s Setting up libwebpmux3:arm64 (1.3.2-0.4) ...
363s Setting up python3-appdirs (1.4.4-4) ...
363s Setting up libsz2:arm64 (1.1.2-1) ...
363s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
363s Setting up python3-sympy (1.12-7) ...
378s Setting up liblapack3:arm64 (3.12.0-3) ...
378s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
378s Setting up libhts3:arm64 (1.18+ds-1) ...
378s Setting up python3-pysam (0.22.0+ds-1) ...
378s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
378s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ...
378s Setting up xfonts-utils (1:7.7+6build2) ...
378s Setting up python3-fs (2.4.16-3) ...
379s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
379s Setting up libraqm0:arm64 (0.10.1-1) ...
379s Setting up python3-numpy (1:1.24.2-2) ...
384s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ...
384s Setting up python3-lxml:arm64 (5.1.0-1) ...
384s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
384s Setting up xml-core (0.19) ...
385s Setting up python3-contourpy (1.0.7-1build2) ...
385s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
385s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ...
385s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ...
385s Setting up libxft2:arm64 (2.3.6-1) ...
385s Setting up python3-scipy (1.11.4-6) ...
393s Setting up libtk8.6:arm64 (8.6.14-1) ...
393s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ...
393s Setting up python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ...
393s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ...
394s Setting up fonts-urw-base35 (20200910-8) ...
394s Setting up libcairo2:arm64 (1.18.0-1) ...
394s Setting up python3-pil:arm64 (10.2.0-1) ...
395s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
407s Setting up python3-h5py (3.10.0-1ubuntu1) ...
407s Setting up python3-sklearn (1.4.1.post1+dfsg-1) ...
412s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ...
412s Setting up python3-cairo (1.25.1-2) ...
412s Setting up blt (2.5.3+dfsg-7) ...
412s Setting up python3-tk:arm64 (3.11.5-1) ...
413s Setting up python3-pil.imagetk:arm64 (10.2.0-1) ...
413s Setting up python3-rlpycairo (0.3.0-3) ...
413s Setting up python3-reportlab (4.1.0-1) ...
415s Setting up python3-fonttools (4.46.0-1) ...
417s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
418s Setting up python3-matplotlib (3.6.3-1ubuntu3) ...
422s Setting up python3-seaborn (0.13.2-2) ...
422s Processing triggers for man-db (2.12.0-3) ...
424s Processing triggers for libc-bin (2.39-0ubuntu6) ...
424s Processing triggers for sgml-base (1.31) ...
424s Setting up w3c-sgml-lib (1.3-3) ...
497s Setting up python3-biopython (1.81+dfsg-3) ...
500s Setting up mcaller (1.0.3+git20210624.b415090-3) ...
500s Setting up autopkgtest-satdep (0) ...
507s (Reading database ... 87782 files and directories currently installed.)
507s Removing autopkgtest-satdep (0) ...
508s autopkgtest [17:04:22]: test run-unit-test: [-----------------------
511s testdata/
511s 1 contigs
511s 1 threads
511s thread finished processing...:
511s 35 observations
511s 35 positions
511s 0 regions with multiple methylated bases
511s 0 observations with skips included
511s 8 observations with too many skips
511s Finished extracting signals
513s testdata/
513s 1 contigs
513s 1 threads
513s thread finished processing...:
513s 9 observations
513s 9 positions
513s 0 regions with multiple methylated bases
513s 0 observations with skips included
513s 2 observations with too many skips
513s Finished extracting signals
515s testdata/
515s 1 contigs
515s 4 threads
517s thread finished processing...:
517s 9 observations
517s 9 positions
517s 0 regions with multiple methylated bases
517s 0 observations with skips included
517s 4 observations with too many skips
518s thread finished processing...:
518s 28 observations
518s 28 positions
518s 0 regions with multiple methylated bases
518s 0 observations with skips included
518s 6 observations with too many skips
518s Error: could not find sequence for reference contig li
518s thread finished processing...:
518s 16 observations
518s 16 positions
518s 0 regions with multiple methylated bases
518s 0 observations with skips included
518s 6 observations with too many skips
518s thread finished processing...:
518s 44 observations
518s 44 positions
518s 1 regions with multiple methylated bases
518s 0 observations with skips included
518s 10 observations with too many skips
519s Finished extracting signals
519s Merging files...
519s Training...
519s ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A']
519s [[-0.18999999999999992, -1.6799999999999997, -2.3, 0.56, -1.41, 1.48, 7.055265349382997], [-1.1300000000000001, -1.67, -1.1, -0.5774999999999999, 0.42, 1.0225, 7.055265349382997], [0.0050000000000000044, -0.29500000000000004, -0.54, 3.96, 1.47, 0.06499999999999995, 7.055265349382997], [3.255, 3.925, 0.03999999999999998, -0.15599999999999997, -1.01, 1.3533333333333333, 7.055265349382997], [-0.07999999999999996, -1.3666666666666665, 0.84, -0.5449999999999999, -3.22, -1.53, 7.055265349382997], [-1.74, -2.56, -2.0774999999999997, 1.84, -0.09999999999999998, -0.3, 7.055265349382997], [1.92, 2.75, 1.59, 1.6433333333333333, 1.59, 1.27, 7.055265349382997], [-1.44, -5.03, 1.4449999999999998, 0.4000000000000001, -0.588, -0.55, 7.055265349382997], [-1.4433333333333334, -0.020000000000000018, -0.0366666666666667, -0.5499999999999999, 0.64, -2.71, 7.055265349382997], [-1.23, -1.635, -0.24, 1.1033333333333333, -2.215, -2.93, 7.055265349382997]]
519s ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AAATGMGATTT', 'AGTAGMTTGAT', 'ACTTAMCCGGT']
519s NN general model scores: 0.875,0.5,0.5,1.0,0.5
519s Cross validation accuracy: 0.68 (+/- 0.44)
519s Finished training
520s PASS
520s autopkgtest [17:04:34]: test run-unit-test: -----------------------]
520s autopkgtest [17:04:34]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
520s run-unit-test        PASS
521s autopkgtest [17:04:35]: @@@@@@@@@@@@@@@@@@@@ summary
521s run-unit-test        PASS
534s Creating nova instance adt-noble-arm64-mcaller-20240324-165554-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)...