0s autopkgtest [17:30:39]: starting date and time: 2024-03-24 17:30:39+0000 0s autopkgtest [17:30:39]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [17:30:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u05bqdk2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade mapdamage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-45.secgroup --name adt-noble-arm64-mapdamage-20240324-165511-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 93s autopkgtest [17:32:12]: testbed dpkg architecture: arm64 93s autopkgtest [17:32:12]: testbed apt version: 2.7.12 93s autopkgtest [17:32:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 95s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 95s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 95s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 95s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 95s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 95s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 95s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 95s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 97s Fetched 9850 kB in 2s (5646 kB/s) 98s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Calculating upgrade... 101s The following packages will be REMOVED: 101s libssl3 101s The following NEW packages will be installed: 101s libssl3t64 101s The following packages have been kept back: 101s curl 101s The following packages will be upgraded: 101s openssl 102s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 102s Need to get 2777 kB of archives. 102s After this operation, 139 kB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 103s Fetched 2777 kB in 1s (3165 kB/s) 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 103s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 103s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 103s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 103s wget depends on libssl3 (>= 3.0.0). 103s u-boot-tools depends on libssl3 (>= 3.0.0). 103s tnftp depends on libssl3 (>= 3.0.0). 103s tcpdump depends on libssl3 (>= 3.0.0). 103s systemd-resolved depends on libssl3 (>= 3.0.0). 103s systemd depends on libssl3 (>= 3.0.0). 103s sudo depends on libssl3 (>= 3.0.0). 103s sbsigntool depends on libssl3 (>= 3.0.0). 103s rsync depends on libssl3 (>= 3.0.0). 103s python3-cryptography depends on libssl3 (>= 3.0.0). 103s openssh-server depends on libssl3 (>= 3.0.10). 103s openssh-client depends on libssl3 (>= 3.0.10). 103s mtd-utils depends on libssl3 (>= 3.0.0). 103s mokutil depends on libssl3 (>= 3.0.0). 103s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 103s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 103s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 103s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 103s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 103s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 103s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 103s libnvme1 depends on libssl3 (>= 3.0.0). 103s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 103s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 103s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 103s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 103s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 103s kmod depends on libssl3 (>= 3.0.0). 103s dhcpcd-base depends on libssl3 (>= 3.0.0). 103s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 103s 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 103s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 103s Selecting previously unselected package libssl3t64:arm64. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 103s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 103s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 103s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 103s Setting up openssl (3.0.13-0ubuntu2) ... 103s Processing triggers for man-db (2.12.0-3) ... 104s Processing triggers for libc-bin (2.39-0ubuntu6) ... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 105s sh: Attempting to set up Debian/Ubuntu apt sources automatically 105s sh: Distribution appears to be Ubuntu 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s eatmydata is already the newest version (131-1). 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s dbus is already the newest version (1.14.10-4ubuntu1). 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s rng-tools-debian is already the newest version (2.4). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s The following packages will be REMOVED: 110s cloud-init* python3-configobj* python3-debconf* 110s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 110s After this operation, 3256 kB disk space will be freed. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 110s Removing cloud-init (24.1.2-0ubuntu1) ... 110s Removing python3-configobj (5.0.8-3) ... 111s Removing python3-debconf (1.5.86) ... 111s Processing triggers for man-db (2.12.0-3) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 111s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 111s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 111s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 112s invoke-rc.d: policy-rc.d denied execution of try-restart. 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s linux-generic is already the newest version (6.8.0-11.11+1). 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 115s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s Calculating upgrade... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s autopkgtest [17:32:36]: rebooting testbed after setup commands that affected boot 263s autopkgtest [17:35:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 266s autopkgtest [17:35:05]: @@@@@@@@@@@@@@@@@@@@ apt-source mapdamage 267s Get:1 http://ftpmaster.internal/ubuntu noble/universe mapdamage 2.2.1+dfsg-3 (dsc) [2232 B] 267s Get:2 http://ftpmaster.internal/ubuntu noble/universe mapdamage 2.2.1+dfsg-3 (tar) [36.2 kB] 267s Get:3 http://ftpmaster.internal/ubuntu noble/universe mapdamage 2.2.1+dfsg-3 (diff) [7764 B] 267s gpgv: Signature made Thu Nov 24 11:25:05 2022 UTC 267s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 267s gpgv: issuer "tille@debian.org" 267s gpgv: Can't check signature: No public key 267s dpkg-source: warning: cannot verify inline signature for ./mapdamage_2.2.1+dfsg-3.dsc: no acceptable signature found 267s autopkgtest [17:35:06]: testing package mapdamage version 2.2.1+dfsg-3 268s autopkgtest [17:35:07]: build not needed 268s autopkgtest [17:35:07]: test run-unit-test: preparing testbed 274s Reading package lists... 274s Building dependency tree... 274s Reading state information... 275s Starting pkgProblemResolver with broken count: 0 275s Starting 2 pkgProblemResolver with broken count: 0 275s Done 275s The following additional packages will be installed: 275s cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu fontconfig 275s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc gcc-13 275s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 275s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu libasan8 libatomic1 275s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 275s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 275s libgomp1 libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b 275s libhts3 libhtscodecs2 libhwasan0 libice6 libisl23 libitm1 libjbig0 275s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 liblsan0 libmpc3 libopenblas-dev 275s libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpango-1.0-0 275s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 275s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 275s libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 275s libxss1 libxt6 linux-libc-dev littler mapdamage python3-pysam r-base-core 275s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver 275s r-cran-foreach r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable 275s r-cran-inline r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 275s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 275s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 275s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 275s r-cran-rlang r-cran-runit r-cran-scales r-cran-tibble r-cran-utf8 275s r-cran-vctrs r-cran-viridislite r-cran-withr rpcsvc-proto seqtk unzip 275s x11-common xdg-utils zip 275s Suggested packages: 275s cpp-doc gcc-13-locales cpp-13-doc gcc-multilib manpages-dev autoconf 275s automake libtool flex bison gdb gcc-doc gcc-13-doc gdb-aarch64-linux-gnu 275s gfortran-doc gfortran-13-doc libcoarrays-dev glibc-doc gsl-ref-psdoc 275s | gsl-doc-pdf | gsl-doc-info | gsl-ref-html tcl8.6 tk8.6 elpa-ess r-doc-info 275s | r-doc-pdf r-mathlib r-base-html r-cran-kernsmooth r-cran-kernlab 275s r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr 275s r-cran-png r-cran-jpeg r-cran-knitr r-cran-rmarkdown r-cran-viridis 275s r-cran-covr r-cran-magick r-cran-sf r-cran-getopt r-cran-bit64 r-cran-dbi 275s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-stringi 275s r-cran-survival r-cran-units r-cran-vdiffr r-cran-testthat r-cran-bench 275s r-cran-blob r-cran-brio r-cran-callr r-cran-crayon r-cran-evaluate 275s r-cran-here r-cran-hms r-cran-htmltools r-cran-pkgbuild r-cran-pkgload 275s r-cran-purrr r-cran-tidyr 275s Recommended packages: 275s manpages manpages-dev libc-devtools r-recommended r-base-dev r-doc-html 275s r-cran-callr r-cran-covr r-cran-crayon r-cran-digest r-cran-htmltools 275s r-cran-htmlwidgets r-cran-knitr r-cran-mockery r-cran-processx r-cran-ps 275s r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-testthat 275s r-cran-whoami r-cran-unitizer r-cran-interp r-cran-dplyr r-cran-hexbin 275s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 275s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 275s r-cran-vdiffr r-cran-xml2 r-cran-dbi r-cran-rsqlite r-cran-waldo 275s r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-fs r-cran-usethis 275s r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-stringi r-cran-data.table 275s r-cran-mockr r-cran-formattable r-cran-generics r-cran-pkgdown 275s r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 275s x11-utils x11-xserver-utils 275s The following NEW packages will be installed: 275s autopkgtest-satdep cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 275s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc gcc-13 275s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 275s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu libasan8 libatomic1 275s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 275s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 275s libgomp1 libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b 275s libhts3 libhtscodecs2 libhwasan0 libice6 libisl23 libitm1 libjbig0 275s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 liblsan0 libmpc3 libopenblas-dev 275s libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpango-1.0-0 275s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 275s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 275s libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 275s libxss1 libxt6 linux-libc-dev littler mapdamage python3-pysam r-base-core 275s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver 275s r-cran-foreach r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable 275s r-cran-inline r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 275s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 275s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 275s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 275s r-cran-rlang r-cran-runit r-cran-scales r-cran-tibble r-cran-utf8 275s r-cran-vctrs r-cran-viridislite r-cran-withr rpcsvc-proto seqtk unzip 275s x11-common xdg-utils zip 275s 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. 275s Need to get 144 MB/144 MB of archives. 275s After this operation, 442 MB of additional disk space will be used. 275s Get:1 /tmp/autopkgtest.O9lLM4/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 276s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 276s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 276s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 278s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 278s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 278s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 278s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 278s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 279s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 279s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 279s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 279s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 279s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 279s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 279s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 279s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 279s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 279s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 279s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 279s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 279s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 279s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 280s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 280s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 280s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 280s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 280s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 280s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB] 280s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 280s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 280s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 280s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB] 281s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 281s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 281s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 281s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 281s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 281s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 281s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 281s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 281s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 281s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 281s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 281s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 281s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 281s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 libgslcblas0 arm64 2.7.1+dfsg-6ubuntu1 [72.5 kB] 281s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl27 arm64 2.7.1+dfsg-6ubuntu1 [912 kB] 281s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl-dev arm64 2.7.1+dfsg-6ubuntu1 [1185 kB] 281s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 281s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 281s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 281s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 281s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 281s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 281s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 281s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0-pthread arm64 0.3.26+ds-1 [5464 kB] 282s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 282s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 282s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0 arm64 0.3.26+ds-1 [6170 B] 282s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-pthread-dev arm64 0.3.26+ds-1 [3790 kB] 282s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-dev arm64 0.3.26+ds-1 [19.6 kB] 282s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 282s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 282s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 282s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 282s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 282s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 282s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 282s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 282s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 282s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 282s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 282s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 282s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 282s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 282s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 282s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 282s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 282s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 282s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 282s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 282s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 284s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 284s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 284s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 284s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 284s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 284s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gam arm64 1.22-3-1 [407 kB] 284s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 284s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 284s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 284s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 284s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 284s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 284s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 284s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 284s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 284s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 285s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 285s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 285s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 285s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 285s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 286s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 286s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 286s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 286s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 286s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 286s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 286s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 286s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 286s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 286s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 286s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 286s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 286s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 286s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-inline all 0.3.19-2 [129 kB] 286s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 seqtk arm64 1.4-2 [34.5 kB] 286s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB] 286s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 286s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 286s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppgsl arm64 0.3.13-1 [198 kB] 286s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 mapdamage all 2.2.1+dfsg-3 [43.1 kB] 286s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 287s Preconfiguring packages ... 287s Fetched 144 MB in 11s (13.2 MB/s) 287s Selecting previously unselected package libisl23:arm64. 287s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 287s Preparing to unpack .../000-libisl23_0.26-3_arm64.deb ... 287s Unpacking libisl23:arm64 (0.26-3) ... 287s Selecting previously unselected package libmpc3:arm64. 287s Preparing to unpack .../001-libmpc3_1.3.1-1_arm64.deb ... 287s Unpacking libmpc3:arm64 (1.3.1-1) ... 287s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 287s Preparing to unpack .../002-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 287s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 287s Selecting previously unselected package cpp-13. 287s Preparing to unpack .../003-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 287s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 287s Selecting previously unselected package cpp-aarch64-linux-gnu. 287s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 287s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 287s Selecting previously unselected package cpp. 287s Preparing to unpack .../005-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 287s Unpacking cpp (4:13.2.0-7ubuntu1) ... 287s Selecting previously unselected package fonts-dejavu-mono. 287s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ... 287s Unpacking fonts-dejavu-mono (2.37-8) ... 287s Selecting previously unselected package fonts-dejavu-core. 287s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ... 287s Unpacking fonts-dejavu-core (2.37-8) ... 287s Selecting previously unselected package fontconfig-config. 287s Preparing to unpack .../008-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 287s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 287s Selecting previously unselected package libfontconfig1:arm64. 287s Preparing to unpack .../009-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 287s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 287s Selecting previously unselected package fontconfig. 287s Preparing to unpack .../010-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 287s Unpacking fontconfig (2.15.0-1ubuntu1) ... 287s Selecting previously unselected package libcc1-0:arm64. 287s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 287s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 287s Selecting previously unselected package libgomp1:arm64. 287s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 287s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 288s Selecting previously unselected package libitm1:arm64. 288s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_arm64.deb ... 288s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 288s Selecting previously unselected package libatomic1:arm64. 288s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 288s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 288s Selecting previously unselected package libasan8:arm64. 288s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_arm64.deb ... 288s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 288s Selecting previously unselected package liblsan0:arm64. 288s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 288s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 288s Selecting previously unselected package libtsan2:arm64. 288s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 288s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 288s Selecting previously unselected package libubsan1:arm64. 288s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 288s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 288s Selecting previously unselected package libhwasan0:arm64. 288s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 288s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 288s Selecting previously unselected package libgcc-13-dev:arm64. 288s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 288s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 288s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 288s Preparing to unpack .../021-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 288s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 288s Selecting previously unselected package gcc-13. 288s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 288s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 288s Selecting previously unselected package gcc-aarch64-linux-gnu. 289s Preparing to unpack .../023-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 289s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 289s Selecting previously unselected package gcc. 289s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 289s Unpacking gcc (4:13.2.0-7ubuntu1) ... 289s Selecting previously unselected package libgfortran5:arm64. 289s Preparing to unpack .../025-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 289s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 289s Selecting previously unselected package libgfortran-13-dev:arm64. 289s Preparing to unpack .../026-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 289s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 289s Selecting previously unselected package libc-dev-bin. 289s Preparing to unpack .../027-libc-dev-bin_2.39-0ubuntu6_arm64.deb ... 289s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 289s Selecting previously unselected package linux-libc-dev:arm64. 289s Preparing to unpack .../028-linux-libc-dev_6.8.0-11.11_arm64.deb ... 289s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 289s Selecting previously unselected package libcrypt-dev:arm64. 289s Preparing to unpack .../029-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 289s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 289s Selecting previously unselected package rpcsvc-proto. 289s Preparing to unpack .../030-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 289s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 289s Selecting previously unselected package libc6-dev:arm64. 289s Preparing to unpack .../031-libc6-dev_2.39-0ubuntu6_arm64.deb ... 289s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ... 289s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 289s Preparing to unpack .../032-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 289s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 289s Selecting previously unselected package gfortran-13. 289s Preparing to unpack .../033-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 289s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 289s Selecting previously unselected package gfortran-aarch64-linux-gnu. 289s Preparing to unpack .../034-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 289s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 289s Selecting previously unselected package gfortran. 289s Preparing to unpack .../035-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 289s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 289s Selecting previously unselected package libblas3:arm64. 289s Preparing to unpack .../036-libblas3_3.12.0-3_arm64.deb ... 289s Unpacking libblas3:arm64 (3.12.0-3) ... 289s Selecting previously unselected package libpixman-1-0:arm64. 289s Preparing to unpack .../037-libpixman-1-0_0.42.2-1_arm64.deb ... 289s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 289s Selecting previously unselected package libxcb-render0:arm64. 289s Preparing to unpack .../038-libxcb-render0_1.15-1_arm64.deb ... 289s Unpacking libxcb-render0:arm64 (1.15-1) ... 289s Selecting previously unselected package libxcb-shm0:arm64. 289s Preparing to unpack .../039-libxcb-shm0_1.15-1_arm64.deb ... 289s Unpacking libxcb-shm0:arm64 (1.15-1) ... 289s Selecting previously unselected package libxrender1:arm64. 289s Preparing to unpack .../040-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 289s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 289s Selecting previously unselected package libcairo2:arm64. 289s Preparing to unpack .../041-libcairo2_1.18.0-1_arm64.deb ... 289s Unpacking libcairo2:arm64 (1.18.0-1) ... 289s Selecting previously unselected package libdatrie1:arm64. 289s Preparing to unpack .../042-libdatrie1_0.2.13-3_arm64.deb ... 289s Unpacking libdatrie1:arm64 (0.2.13-3) ... 289s Selecting previously unselected package libdeflate0:arm64. 289s Preparing to unpack .../043-libdeflate0_1.19-1_arm64.deb ... 289s Unpacking libdeflate0:arm64 (1.19-1) ... 289s Selecting previously unselected package libgraphite2-3:arm64. 289s Preparing to unpack .../044-libgraphite2-3_1.3.14-2_arm64.deb ... 289s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 289s Selecting previously unselected package libgslcblas0:arm64. 289s Preparing to unpack .../045-libgslcblas0_2.7.1+dfsg-6ubuntu1_arm64.deb ... 289s Unpacking libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 289s Selecting previously unselected package libgsl27:arm64. 290s Preparing to unpack .../046-libgsl27_2.7.1+dfsg-6ubuntu1_arm64.deb ... 290s Unpacking libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 290s Selecting previously unselected package libgsl-dev. 290s Preparing to unpack .../047-libgsl-dev_2.7.1+dfsg-6ubuntu1_arm64.deb ... 290s Unpacking libgsl-dev (2.7.1+dfsg-6ubuntu1) ... 290s Selecting previously unselected package libharfbuzz0b:arm64. 290s Preparing to unpack .../048-libharfbuzz0b_8.3.0-2_arm64.deb ... 290s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 290s Selecting previously unselected package libhtscodecs2:arm64. 290s Preparing to unpack .../049-libhtscodecs2_1.6.0-1_arm64.deb ... 290s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 290s Selecting previously unselected package libhts3:arm64. 290s Preparing to unpack .../050-libhts3_1.18+ds-1_arm64.deb ... 290s Unpacking libhts3:arm64 (1.18+ds-1) ... 290s Selecting previously unselected package x11-common. 290s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu2_all.deb ... 290s Unpacking x11-common (1:7.7+23ubuntu2) ... 290s Selecting previously unselected package libice6:arm64. 290s Preparing to unpack .../052-libice6_2%3a1.0.10-1build2_arm64.deb ... 290s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 290s Selecting previously unselected package libjpeg-turbo8:arm64. 290s Preparing to unpack .../053-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 290s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 290s Selecting previously unselected package libjpeg8:arm64. 290s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_arm64.deb ... 290s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 290s Selecting previously unselected package libopenblas0-pthread:arm64. 290s Preparing to unpack .../055-libopenblas0-pthread_0.3.26+ds-1_arm64.deb ... 290s Unpacking libopenblas0-pthread:arm64 (0.3.26+ds-1) ... 290s Selecting previously unselected package liblapack3:arm64. 290s Preparing to unpack .../056-liblapack3_3.12.0-3_arm64.deb ... 290s Unpacking liblapack3:arm64 (3.12.0-3) ... 290s Selecting previously unselected package liblerc4:arm64. 290s Preparing to unpack .../057-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 290s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 290s Selecting previously unselected package libopenblas0:arm64. 290s Preparing to unpack .../058-libopenblas0_0.3.26+ds-1_arm64.deb ... 290s Unpacking libopenblas0:arm64 (0.3.26+ds-1) ... 290s Selecting previously unselected package libopenblas-pthread-dev:arm64. 290s Preparing to unpack .../059-libopenblas-pthread-dev_0.3.26+ds-1_arm64.deb ... 290s Unpacking libopenblas-pthread-dev:arm64 (0.3.26+ds-1) ... 290s Selecting previously unselected package libopenblas-dev:arm64. 290s Preparing to unpack .../060-libopenblas-dev_0.3.26+ds-1_arm64.deb ... 290s Unpacking libopenblas-dev:arm64 (0.3.26+ds-1) ... 290s Selecting previously unselected package libthai-data. 290s Preparing to unpack .../061-libthai-data_0.1.29-2_all.deb ... 290s Unpacking libthai-data (0.1.29-2) ... 290s Selecting previously unselected package libthai0:arm64. 290s Preparing to unpack .../062-libthai0_0.1.29-2_arm64.deb ... 290s Unpacking libthai0:arm64 (0.1.29-2) ... 290s Selecting previously unselected package libpango-1.0-0:arm64. 290s Preparing to unpack .../063-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 290s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 290s Selecting previously unselected package libpangoft2-1.0-0:arm64. 290s Preparing to unpack .../064-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 290s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 290s Selecting previously unselected package libpangocairo-1.0-0:arm64. 290s Preparing to unpack .../065-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 290s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 290s Selecting previously unselected package libpaper1:arm64. 290s Preparing to unpack .../066-libpaper1_1.1.29_arm64.deb ... 290s Unpacking libpaper1:arm64 (1.1.29) ... 290s Selecting previously unselected package libpaper-utils. 290s Preparing to unpack .../067-libpaper-utils_1.1.29_arm64.deb ... 290s Unpacking libpaper-utils (1.1.29) ... 290s Selecting previously unselected package libsharpyuv0:arm64. 290s Preparing to unpack .../068-libsharpyuv0_1.3.2-0.4_arm64.deb ... 290s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 291s Selecting previously unselected package libsm6:arm64. 291s Preparing to unpack .../069-libsm6_2%3a1.2.3-1build2_arm64.deb ... 291s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 291s Selecting previously unselected package libtcl8.6:arm64. 291s Preparing to unpack .../070-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 291s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 291s Selecting previously unselected package libjbig0:arm64. 291s Preparing to unpack .../071-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 291s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 291s Selecting previously unselected package libwebp7:arm64. 291s Preparing to unpack .../072-libwebp7_1.3.2-0.4_arm64.deb ... 291s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 291s Selecting previously unselected package libtiff6:arm64. 291s Preparing to unpack .../073-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 291s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 291s Selecting previously unselected package libxft2:arm64. 291s Preparing to unpack .../074-libxft2_2.3.6-1_arm64.deb ... 291s Unpacking libxft2:arm64 (2.3.6-1) ... 291s Selecting previously unselected package libxss1:arm64. 291s Preparing to unpack .../075-libxss1_1%3a1.2.3-1build2_arm64.deb ... 291s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 291s Selecting previously unselected package libtk8.6:arm64. 291s Preparing to unpack .../076-libtk8.6_8.6.14-1_arm64.deb ... 291s Unpacking libtk8.6:arm64 (8.6.14-1) ... 291s Selecting previously unselected package libxt6:arm64. 291s Preparing to unpack .../077-libxt6_1%3a1.2.1-1.1_arm64.deb ... 291s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 291s Selecting previously unselected package zip. 291s Preparing to unpack .../078-zip_3.0-13_arm64.deb ... 291s Unpacking zip (3.0-13) ... 291s Selecting previously unselected package unzip. 291s Preparing to unpack .../079-unzip_6.0-28ubuntu3_arm64.deb ... 291s Unpacking unzip (6.0-28ubuntu3) ... 291s Selecting previously unselected package xdg-utils. 291s Preparing to unpack .../080-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 291s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 291s Selecting previously unselected package r-base-core. 291s Preparing to unpack .../081-r-base-core_4.3.2-1build1_arm64.deb ... 291s Unpacking r-base-core (4.3.2-1build1) ... 291s Selecting previously unselected package r-cran-littler. 291s Preparing to unpack .../082-r-cran-littler_0.3.19-1_arm64.deb ... 291s Unpacking r-cran-littler (0.3.19-1) ... 291s Selecting previously unselected package littler. 291s Preparing to unpack .../083-littler_0.3.19-1_all.deb ... 291s Unpacking littler (0.3.19-1) ... 291s Selecting previously unselected package r-cran-codetools. 291s Preparing to unpack .../084-r-cran-codetools_0.2-19-1_all.deb ... 291s Unpacking r-cran-codetools (0.2-19-1) ... 291s Selecting previously unselected package r-cran-iterators. 291s Preparing to unpack .../085-r-cran-iterators_1.0.14-1_all.deb ... 291s Unpacking r-cran-iterators (1.0.14-1) ... 291s Selecting previously unselected package r-cran-foreach. 291s Preparing to unpack .../086-r-cran-foreach_1.5.2-1_all.deb ... 291s Unpacking r-cran-foreach (1.5.2-1) ... 291s Selecting previously unselected package r-cran-gam. 291s Preparing to unpack .../087-r-cran-gam_1.22-3-1_arm64.deb ... 291s Unpacking r-cran-gam (1.22-3-1) ... 291s Selecting previously unselected package r-cran-cli. 291s Preparing to unpack .../088-r-cran-cli_3.6.2-1_arm64.deb ... 291s Unpacking r-cran-cli (3.6.2-1) ... 291s Selecting previously unselected package r-cran-glue. 291s Preparing to unpack .../089-r-cran-glue_1.7.0-1_arm64.deb ... 291s Unpacking r-cran-glue (1.7.0-1) ... 291s Selecting previously unselected package r-cran-rlang. 291s Preparing to unpack .../090-r-cran-rlang_1.1.3-1_arm64.deb ... 291s Unpacking r-cran-rlang (1.1.3-1) ... 292s Selecting previously unselected package r-cran-lifecycle. 292s Preparing to unpack .../091-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 292s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 292s Selecting previously unselected package r-cran-gtable. 292s Preparing to unpack .../092-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 292s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 292s Selecting previously unselected package r-cran-isoband. 292s Preparing to unpack .../093-r-cran-isoband_0.2.7-1_arm64.deb ... 292s Unpacking r-cran-isoband (0.2.7-1) ... 292s Selecting previously unselected package r-cran-mass. 292s Preparing to unpack .../094-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 292s Unpacking r-cran-mass (7.3-60.0.1-1) ... 292s Selecting previously unselected package r-cran-lattice. 292s Preparing to unpack .../095-r-cran-lattice_0.22-5-1_arm64.deb ... 292s Unpacking r-cran-lattice (0.22-5-1) ... 292s Selecting previously unselected package r-cran-nlme. 292s Preparing to unpack .../096-r-cran-nlme_3.1.164-1_arm64.deb ... 292s Unpacking r-cran-nlme (3.1.164-1) ... 292s Selecting previously unselected package r-cran-matrix. 292s Preparing to unpack .../097-r-cran-matrix_1.6-5-1_arm64.deb ... 292s Unpacking r-cran-matrix (1.6-5-1) ... 292s Selecting previously unselected package r-cran-mgcv. 292s Preparing to unpack .../098-r-cran-mgcv_1.9-1-1_arm64.deb ... 292s Unpacking r-cran-mgcv (1.9-1-1) ... 292s Selecting previously unselected package r-cran-farver. 292s Preparing to unpack .../099-r-cran-farver_2.1.1-1_arm64.deb ... 292s Unpacking r-cran-farver (2.1.1-1) ... 292s Selecting previously unselected package r-cran-labeling. 292s Preparing to unpack .../100-r-cran-labeling_0.4.3-1_all.deb ... 292s Unpacking r-cran-labeling (0.4.3-1) ... 292s Selecting previously unselected package r-cran-colorspace. 292s Preparing to unpack .../101-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 292s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 292s Selecting previously unselected package r-cran-munsell. 292s Preparing to unpack .../102-r-cran-munsell_0.5.0-2build1_all.deb ... 292s Unpacking r-cran-munsell (0.5.0-2build1) ... 292s Selecting previously unselected package r-cran-r6. 292s Preparing to unpack .../103-r-cran-r6_2.5.1-1_all.deb ... 292s Unpacking r-cran-r6 (2.5.1-1) ... 292s Selecting previously unselected package r-cran-rcolorbrewer. 292s Preparing to unpack .../104-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 292s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 292s Selecting previously unselected package r-cran-viridislite. 292s Preparing to unpack .../105-r-cran-viridislite_0.4.2-2_all.deb ... 292s Unpacking r-cran-viridislite (0.4.2-2) ... 292s Selecting previously unselected package r-cran-scales. 292s Preparing to unpack .../106-r-cran-scales_1.3.0-1_all.deb ... 292s Unpacking r-cran-scales (1.3.0-1) ... 292s Selecting previously unselected package r-cran-fansi. 292s Preparing to unpack .../107-r-cran-fansi_1.0.5-1_arm64.deb ... 292s Unpacking r-cran-fansi (1.0.5-1) ... 292s Selecting previously unselected package r-cran-magrittr. 292s Preparing to unpack .../108-r-cran-magrittr_2.0.3-1_arm64.deb ... 292s Unpacking r-cran-magrittr (2.0.3-1) ... 292s Selecting previously unselected package r-cran-utf8. 292s Preparing to unpack .../109-r-cran-utf8_1.2.4-1_arm64.deb ... 292s Unpacking r-cran-utf8 (1.2.4-1) ... 292s Selecting previously unselected package r-cran-vctrs. 292s Preparing to unpack .../110-r-cran-vctrs_0.6.5-1_arm64.deb ... 292s Unpacking r-cran-vctrs (0.6.5-1) ... 292s Selecting previously unselected package r-cran-pillar. 292s Preparing to unpack .../111-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 292s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 292s Selecting previously unselected package r-cran-pkgconfig. 292s Preparing to unpack .../112-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 292s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 292s Selecting previously unselected package r-cran-tibble. 292s Preparing to unpack .../113-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 292s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 292s Selecting previously unselected package r-cran-withr. 292s Preparing to unpack .../114-r-cran-withr_2.5.0-1_all.deb ... 292s Unpacking r-cran-withr (2.5.0-1) ... 292s Selecting previously unselected package r-cran-ggplot2. 292s Preparing to unpack .../115-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 292s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 292s Selecting previously unselected package r-cran-inline. 292s Preparing to unpack .../116-r-cran-inline_0.3.19-2_all.deb ... 292s Unpacking r-cran-inline (0.3.19-2) ... 292s Selecting previously unselected package seqtk. 292s Preparing to unpack .../117-seqtk_1.4-2_arm64.deb ... 292s Unpacking seqtk (1.4-2) ... 292s Selecting previously unselected package python3-pysam. 292s Preparing to unpack .../118-python3-pysam_0.22.0+ds-1_arm64.deb ... 292s Unpacking python3-pysam (0.22.0+ds-1) ... 293s Selecting previously unselected package r-cran-pkgkitten. 293s Preparing to unpack .../119-r-cran-pkgkitten_0.2.3-1_all.deb ... 293s Unpacking r-cran-pkgkitten (0.2.3-1) ... 293s Selecting previously unselected package r-cran-rcpp. 293s Preparing to unpack .../120-r-cran-rcpp_1.0.12-1_arm64.deb ... 293s Unpacking r-cran-rcpp (1.0.12-1) ... 293s Selecting previously unselected package r-cran-rcppgsl. 293s Preparing to unpack .../121-r-cran-rcppgsl_0.3.13-1_arm64.deb ... 293s Unpacking r-cran-rcppgsl (0.3.13-1) ... 293s Selecting previously unselected package mapdamage. 293s Preparing to unpack .../122-mapdamage_2.2.1+dfsg-3_all.deb ... 293s Unpacking mapdamage (2.2.1+dfsg-3) ... 293s Selecting previously unselected package r-cran-runit. 293s Preparing to unpack .../123-r-cran-runit_0.4.33-1_all.deb ... 293s Unpacking r-cran-runit (0.4.33-1) ... 293s Selecting previously unselected package autopkgtest-satdep. 293s Preparing to unpack .../124-1-autopkgtest-satdep.deb ... 293s Unpacking autopkgtest-satdep (0) ... 293s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 293s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 293s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 293s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 293s Setting up libpaper1:arm64 (1.1.29) ... 293s 293s Creating config file /etc/papersize with new version 293s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 293s Setting up seqtk (1.4-2) ... 293s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 293s Setting up libdatrie1:arm64 (0.2.13-3) ... 293s Setting up libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 293s Setting up libxcb-render0:arm64 (1.15-1) ... 293s Setting up unzip (6.0-28ubuntu3) ... 293s Setting up x11-common (1:7.7+23ubuntu2) ... 294s Setting up libdeflate0:arm64 (1.19-1) ... 294s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 294s Setting up libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 294s Setting up libxcb-shm0:arm64 (1.15-1) ... 294s Setting up libpaper-utils (1.1.29) ... 294s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 294s Setting up zip (3.0-13) ... 294s Setting up libblas3:arm64 (3.12.0-3) ... 294s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 294s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 294s Setting up fonts-dejavu-mono (2.37-8) ... 294s Setting up libmpc3:arm64 (1.3.1-1) ... 294s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 294s Setting up fonts-dejavu-core (2.37-8) ... 294s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 294s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libwebp7:arm64 (1.3.2-0.4) ... 294s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 294s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 294s Setting up libthai-data (0.1.29-2) ... 294s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 294s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libisl23:arm64 (0.26-3) ... 294s Setting up libc-dev-bin (2.39-0ubuntu6) ... 294s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 294s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 294s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 294s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 294s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 294s Setting up libice6:arm64 (2:1.0.10-1build2) ... 294s Setting up liblapack3:arm64 (3.12.0-3) ... 294s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 294s Setting up libhts3:arm64 (1.18+ds-1) ... 294s Setting up libgsl-dev (2.7.1+dfsg-6ubuntu1) ... 294s Setting up libopenblas0-pthread:arm64 (0.3.26+ds-1) ... 294s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 294s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 294s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode 294s Setting up python3-pysam (0.22.0+ds-1) ... 294s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 294s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 294s Setting up libthai0:arm64 (0.1.29-2) ... 294s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 294s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 294s Setting up libopenblas0:arm64 (0.3.26+ds-1) ... 294s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 294s Setting up libc6-dev:arm64 (2.39-0ubuntu6) ... 294s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 294s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 294s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 294s Setting up libopenblas-pthread-dev:arm64 (0.3.26+ds-1) ... 294s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 294s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 294s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode 294s Setting up fontconfig (2.15.0-1ubuntu1) ... 296s Regenerating fonts cache... done. 296s Setting up libxft2:arm64 (2.3.6-1) ... 296s Setting up cpp-13 (13.2.0-17ubuntu2) ... 296s Setting up libtk8.6:arm64 (8.6.14-1) ... 296s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 296s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 296s Setting up libcairo2:arm64 (1.18.0-1) ... 296s Setting up libopenblas-dev:arm64 (0.3.26+ds-1) ... 296s Setting up gcc-13 (13.2.0-17ubuntu2) ... 296s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 296s Setting up cpp (4:13.2.0-7ubuntu1) ... 296s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 296s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 296s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 296s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 296s Setting up gcc (4:13.2.0-7ubuntu1) ... 296s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 296s Setting up r-base-core (4.3.2-1build1) ... 296s 296s Creating config file /etc/R/Renviron with new version 296s Setting up r-cran-labeling (0.4.3-1) ... 296s Setting up r-cran-lattice (0.22-5-1) ... 296s Setting up r-cran-nlme (3.1.164-1) ... 296s Setting up r-cran-farver (2.1.1-1) ... 296s Setting up r-cran-viridislite (0.4.2-2) ... 296s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 296s Setting up r-cran-r6 (2.5.1-1) ... 296s Setting up r-cran-pkgkitten (0.2.3-1) ... 296s Setting up r-cran-magrittr (2.0.3-1) ... 296s Setting up r-cran-littler (0.3.19-1) ... 296s Setting up r-cran-rcpp (1.0.12-1) ... 296s Setting up r-cran-codetools (0.2-19-1) ... 296s Setting up r-cran-inline (0.3.19-2) ... 296s Setting up r-cran-rlang (1.1.3-1) ... 296s Setting up littler (0.3.19-1) ... 296s Setting up r-cran-withr (2.5.0-1) ... 296s Setting up r-cran-iterators (1.0.14-1) ... 296s Setting up r-cran-foreach (1.5.2-1) ... 296s Setting up r-cran-fansi (1.0.5-1) ... 296s Setting up r-cran-mass (7.3-60.0.1-1) ... 296s Setting up r-cran-glue (1.7.0-1) ... 296s Setting up r-cran-gam (1.22-3-1) ... 296s Setting up r-cran-cli (3.6.2-1) ... 296s Setting up gfortran (4:13.2.0-7ubuntu1) ... 296s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 296s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 296s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 296s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 296s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 296s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 296s Setting up r-cran-utf8 (1.2.4-1) ... 296s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 296s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 296s Setting up r-cran-isoband (0.2.7-1) ... 296s Setting up r-cran-runit (0.4.33-1) ... 296s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 296s Setting up r-cran-matrix (1.6-5-1) ... 296s Setting up r-cran-mgcv (1.9-1-1) ... 296s Setting up r-cran-rcppgsl (0.3.13-1) ... 296s Setting up r-cran-vctrs (0.6.5-1) ... 296s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 296s Setting up r-cran-munsell (0.5.0-2build1) ... 296s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 296s Setting up r-cran-scales (1.3.0-1) ... 296s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 296s Setting up mapdamage (2.2.1+dfsg-3) ... 296s Setting up autopkgtest-satdep (0) ... 296s Processing triggers for man-db (2.12.0-3) ... 297s Processing triggers for install-info (7.1-3) ... 297s Processing triggers for libc-bin (2.39-0ubuntu6) ... 304s (Reading database ... 84340 files and directories currently installed.) 304s Removing autopkgtest-satdep (0) ... 305s autopkgtest [17:35:44]: test run-unit-test: [----------------------- 307s Started with the command: /usr/bin/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats 307s Error in (yaxis.at == 2) && (yaxis.at == ylabels.at) : 307s 'length = 2' in coercion to 'logical(1)' 307s Calls: plot.base.composition -> plot.axis 307s 3: (function (e) 307s { 307s traceback(2) 307s quit(status = 1) 307s })() 307s 2: plot.axis(2) 307s 1: plot.base.composition(com, "A", "blue", OPT.AROUND, xlabels = FALSE, 307s ylabels.at = c(2, 4)) 307s additional tests/results/Length_plot.pdf generated 307s Successful run 307s Reading from 'tests/test.bam' 307s Writing results to 'tests/results/' 307s Error: plotting with R failed 307s Error: Required table has not been created ('5pCtoT_freq.txt'), bayesian computation cannot be performed 307s .. 307s ---------------------------------------------------------------------- 307s Ran 2 tests in 2.354s 307s 307s OK 308s autopkgtest [17:35:47]: test run-unit-test: -----------------------] 308s run-unit-test PASS 308s autopkgtest [17:35:47]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 308s autopkgtest [17:35:47]: test run-r-packages-check: preparing testbed 439s autopkgtest [17:37:58]: testbed dpkg architecture: arm64 440s autopkgtest [17:37:59]: testbed apt version: 2.7.12 440s autopkgtest [17:37:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 441s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 441s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 441s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 442s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 442s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 442s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 442s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 442s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 442s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 442s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 442s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 442s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 442s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 448s Fetched 9850 kB in 3s (3300 kB/s) 448s Reading package lists... 452s Reading package lists... 453s Building dependency tree... 453s Reading state information... 454s Calculating upgrade... 455s The following packages will be REMOVED: 455s libssl3 455s The following NEW packages will be installed: 455s libssl3t64 455s The following packages have been kept back: 455s curl 455s The following packages will be upgraded: 455s openssl 455s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 455s Need to get 2777 kB of archives. 455s After this operation, 139 kB of additional disk space will be used. 455s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 455s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 456s Fetched 2777 kB in 1s (3927 kB/s) 456s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 457s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 457s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 457s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 457s wget depends on libssl3 (>= 3.0.0). 457s u-boot-tools depends on libssl3 (>= 3.0.0). 457s tnftp depends on libssl3 (>= 3.0.0). 457s tcpdump depends on libssl3 (>= 3.0.0). 457s systemd-resolved depends on libssl3 (>= 3.0.0). 457s systemd depends on libssl3 (>= 3.0.0). 457s sudo depends on libssl3 (>= 3.0.0). 457s sbsigntool depends on libssl3 (>= 3.0.0). 457s rsync depends on libssl3 (>= 3.0.0). 457s python3-cryptography depends on libssl3 (>= 3.0.0). 457s openssh-server depends on libssl3 (>= 3.0.10). 457s openssh-client depends on libssl3 (>= 3.0.10). 457s mtd-utils depends on libssl3 (>= 3.0.0). 457s mokutil depends on libssl3 (>= 3.0.0). 457s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 457s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 457s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 457s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 457s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 457s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 457s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 457s libnvme1 depends on libssl3 (>= 3.0.0). 457s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 457s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 457s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 457s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 457s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 457s kmod depends on libssl3 (>= 3.0.0). 457s dhcpcd-base depends on libssl3 (>= 3.0.0). 457s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 457s 457s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 457s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 457s Selecting previously unselected package libssl3t64:arm64. 457s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 457s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 457s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 457s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 457s Setting up openssl (3.0.13-0ubuntu2) ... 457s Processing triggers for man-db (2.12.0-3) ... 458s Processing triggers for libc-bin (2.39-0ubuntu6) ... 458s Reading package lists... 459s Building dependency tree... 459s Reading state information... 460s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 462s sh: Attempting to set up Debian/Ubuntu apt sources automatically 462s Reading package lists...sh: Distribution appears to be Ubuntu 464s 465s Building dependency tree... 465s Reading state information... 467s eatmydata is already the newest version (131-1). 467s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 467s Reading package lists... 467s Building dependency tree... 467s Reading state information... 468s dbus is already the newest version (1.14.10-4ubuntu1). 468s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 468s Reading package lists... 468s Building dependency tree... 468s Reading state information... 470s rng-tools-debian is already the newest version (2.4). 470s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 470s Reading package lists... 470s Building dependency tree... 470s Reading state information... 471s The following packages will be REMOVED: 471s cloud-init* python3-configobj* python3-debconf* 472s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 472s After this operation, 3256 kB disk space will be freed. 472s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 472s Removing cloud-init (24.1.2-0ubuntu1) ... 474s Removing python3-configobj (5.0.8-3) ... 474s Removing python3-debconf (1.5.86) ... 474s Processing triggers for man-db (2.12.0-3) ... 474s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 475s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 476s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 476s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 476s invoke-rc.d: policy-rc.d denied execution of try-restart. 476s Reading package lists... 477s Building dependency tree... 477s Reading state information... 478s linux-generic is already the newest version (6.8.0-11.11+1). 478s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 479s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 479s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 479s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 485s Reading package lists... 485s Reading package lists... 485s Building dependency tree... 485s Reading state information... 486s Calculating upgrade... 487s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 487s Reading package lists... 488s Building dependency tree... 488s Reading state information... 489s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 492s autopkgtest [17:38:48]: rebooting testbed after setup commands that affected boot 650s Reading package lists... 651s Building dependency tree... 651s Reading state information... 651s Starting pkgProblemResolver with broken count: 0 651s Starting 2 pkgProblemResolver with broken count: 0 651s Done 653s The following additional packages will be installed: 653s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 653s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 653s libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b libhts3 653s libhtscodecs2 libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 653s libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread 653s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 653s libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 653s libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 653s libxss1 libxt6 littler mapdamage python3-pysam r-base-core r-cran-cli 653s r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver r-cran-foreach 653s r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-inline 653s r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 653s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 653s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 653s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 653s r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs 653s r-cran-viridislite r-cran-withr seqtk unzip x11-common xdg-utils zip 653s Suggested packages: 653s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html tcl8.6 tk8.6 653s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-kernsmooth 653s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs 653s r-cran-dplyr r-cran-png r-cran-jpeg r-cran-knitr r-cran-rmarkdown 653s r-cran-viridis r-cran-covr r-cran-magick r-cran-sf r-cran-getopt 653s r-cran-bit64 r-cran-dbi r-cran-formattable r-cran-nanotime 653s r-cran-palmerpenguins r-cran-stringi r-cran-survival r-cran-units 653s r-cran-vdiffr r-cran-testthat r-cran-bench r-cran-blob r-cran-brio 653s r-cran-callr r-cran-crayon r-cran-evaluate r-cran-here r-cran-hms 653s r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr 653s Recommended packages: 653s r-recommended r-base-dev r-doc-html r-cran-callr r-cran-covr r-cran-crayon 653s r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-knitr 653s r-cran-mockery r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 653s r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-unitizer 653s r-cran-interp r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj 653s r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg 653s r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-dbi 653s r-cran-rsqlite r-cran-waldo r-cran-lintr r-cran-tidyverse r-cran-lubridate 653s r-cran-fs r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms 653s r-cran-stringi r-cran-data.table r-cran-mockr r-cran-formattable 653s r-cran-generics r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl 653s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 653s The following NEW packages will be installed: 653s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 653s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 653s libgfortran5 libgomp1 libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 653s libharfbuzz0b libhts3 libhtscodecs2 libice6 libjbig0 libjpeg-turbo8 libjpeg8 653s liblapack3 liblerc4 libopenblas-dev libopenblas-pthread-dev libopenblas0 653s libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 653s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 653s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 653s libxft2 libxrender1 libxss1 libxt6 littler mapdamage python3-pysam 653s r-base-core r-cran-cli r-cran-codetools r-cran-colorspace r-cran-fansi 653s r-cran-farver r-cran-foreach r-cran-gam r-cran-ggplot2 r-cran-glue 653s r-cran-gtable r-cran-inline r-cran-isoband r-cran-iterators r-cran-labeling 653s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 653s r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar 653s r-cran-pkgconfig r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 653s r-cran-rcppgsl r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 653s r-cran-vctrs r-cran-viridislite r-cran-withr seqtk unzip x11-common 653s xdg-utils zip 653s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 653s Need to get 84.9 MB/84.9 MB of archives. 653s After this operation, 241 MB of additional disk space will be used. 653s Get:1 /tmp/autopkgtest.O9lLM4/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 653s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 657s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 657s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 657s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 657s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 657s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 657s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 657s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 657s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 657s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 657s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 657s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 657s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 657s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 657s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 657s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 657s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libgslcblas0 arm64 2.7.1+dfsg-6ubuntu1 [72.5 kB] 657s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl27 arm64 2.7.1+dfsg-6ubuntu1 [912 kB] 657s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl-dev arm64 2.7.1+dfsg-6ubuntu1 [1185 kB] 657s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 657s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 657s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 657s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 657s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 657s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 657s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 657s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0-pthread arm64 0.3.26+ds-1 [5464 kB] 657s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 657s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 657s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0 arm64 0.3.26+ds-1 [6170 B] 657s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-pthread-dev arm64 0.3.26+ds-1 [3790 kB] 657s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-dev arm64 0.3.26+ds-1 [19.6 kB] 657s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 657s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 657s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 657s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 657s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 657s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 657s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 657s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 657s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 657s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 657s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 657s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 657s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 657s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 657s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 657s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 657s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 657s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 657s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 657s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 657s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 657s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 657s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 657s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 657s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 657s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 657s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gam arm64 1.22-3-1 [407 kB] 657s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 657s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 657s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 657s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 657s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 657s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 657s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 657s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 657s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 657s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 657s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 657s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 657s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 657s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 657s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 657s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 657s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 657s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 657s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 657s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 657s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 657s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 657s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 657s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 657s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 657s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 657s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 657s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 657s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-inline all 0.3.19-2 [129 kB] 657s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 seqtk arm64 1.4-2 [34.5 kB] 657s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB] 658s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 658s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 658s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppgsl arm64 0.3.13-1 [198 kB] 658s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 mapdamage all 2.2.1+dfsg-3 [43.1 kB] 660s Preconfiguring packages ... 660s Fetched 84.9 MB in 5s (17.3 MB/s) 660s Selecting previously unselected package fonts-dejavu-mono. 660s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 660s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 660s Unpacking fonts-dejavu-mono (2.37-8) ... 660s Selecting previously unselected package fonts-dejavu-core. 660s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 660s Unpacking fonts-dejavu-core (2.37-8) ... 660s Selecting previously unselected package fontconfig-config. 660s Preparing to unpack .../02-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 660s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 660s Selecting previously unselected package libfontconfig1:arm64. 660s Preparing to unpack .../03-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 660s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 660s Selecting previously unselected package fontconfig. 660s Preparing to unpack .../04-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 660s Unpacking fontconfig (2.15.0-1ubuntu1) ... 660s Selecting previously unselected package libblas3:arm64. 660s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 660s Unpacking libblas3:arm64 (3.12.0-3) ... 660s Selecting previously unselected package libpixman-1-0:arm64. 660s Preparing to unpack .../06-libpixman-1-0_0.42.2-1_arm64.deb ... 660s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 660s Selecting previously unselected package libxcb-render0:arm64. 660s Preparing to unpack .../07-libxcb-render0_1.15-1_arm64.deb ... 660s Unpacking libxcb-render0:arm64 (1.15-1) ... 660s Selecting previously unselected package libxcb-shm0:arm64. 660s Preparing to unpack .../08-libxcb-shm0_1.15-1_arm64.deb ... 660s Unpacking libxcb-shm0:arm64 (1.15-1) ... 660s Selecting previously unselected package libxrender1:arm64. 660s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 660s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 660s Selecting previously unselected package libcairo2:arm64. 660s Preparing to unpack .../10-libcairo2_1.18.0-1_arm64.deb ... 660s Unpacking libcairo2:arm64 (1.18.0-1) ... 660s Selecting previously unselected package libdatrie1:arm64. 660s Preparing to unpack .../11-libdatrie1_0.2.13-3_arm64.deb ... 660s Unpacking libdatrie1:arm64 (0.2.13-3) ... 660s Selecting previously unselected package libdeflate0:arm64. 660s Preparing to unpack .../12-libdeflate0_1.19-1_arm64.deb ... 660s Unpacking libdeflate0:arm64 (1.19-1) ... 660s Selecting previously unselected package libgfortran5:arm64. 660s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 660s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 660s Selecting previously unselected package libgomp1:arm64. 660s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 660s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 660s Selecting previously unselected package libgraphite2-3:arm64. 660s Preparing to unpack .../15-libgraphite2-3_1.3.14-2_arm64.deb ... 660s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 660s Selecting previously unselected package libgslcblas0:arm64. 660s Preparing to unpack .../16-libgslcblas0_2.7.1+dfsg-6ubuntu1_arm64.deb ... 660s Unpacking libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 660s Selecting previously unselected package libgsl27:arm64. 660s Preparing to unpack .../17-libgsl27_2.7.1+dfsg-6ubuntu1_arm64.deb ... 660s Unpacking libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 660s Selecting previously unselected package libgsl-dev. 660s Preparing to unpack .../18-libgsl-dev_2.7.1+dfsg-6ubuntu1_arm64.deb ... 660s Unpacking libgsl-dev (2.7.1+dfsg-6ubuntu1) ... 660s Selecting previously unselected package libharfbuzz0b:arm64. 660s Preparing to unpack .../19-libharfbuzz0b_8.3.0-2_arm64.deb ... 660s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 660s Selecting previously unselected package libhtscodecs2:arm64. 660s Preparing to unpack .../20-libhtscodecs2_1.6.0-1_arm64.deb ... 660s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 661s Selecting previously unselected package libhts3:arm64. 661s Preparing to unpack .../21-libhts3_1.18+ds-1_arm64.deb ... 661s Unpacking libhts3:arm64 (1.18+ds-1) ... 661s Selecting previously unselected package x11-common. 661s Preparing to unpack .../22-x11-common_1%3a7.7+23ubuntu2_all.deb ... 661s Unpacking x11-common (1:7.7+23ubuntu2) ... 661s Selecting previously unselected package libice6:arm64. 661s Preparing to unpack .../23-libice6_2%3a1.0.10-1build2_arm64.deb ... 661s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 661s Selecting previously unselected package libjpeg-turbo8:arm64. 661s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 661s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 661s Selecting previously unselected package libjpeg8:arm64. 661s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 661s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 661s Selecting previously unselected package libopenblas0-pthread:arm64. 661s Preparing to unpack .../26-libopenblas0-pthread_0.3.26+ds-1_arm64.deb ... 661s Unpacking libopenblas0-pthread:arm64 (0.3.26+ds-1) ... 661s Selecting previously unselected package liblapack3:arm64. 661s Preparing to unpack .../27-liblapack3_3.12.0-3_arm64.deb ... 661s Unpacking liblapack3:arm64 (3.12.0-3) ... 661s Selecting previously unselected package liblerc4:arm64. 661s Preparing to unpack .../28-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 661s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 661s Selecting previously unselected package libopenblas0:arm64. 661s Preparing to unpack .../29-libopenblas0_0.3.26+ds-1_arm64.deb ... 661s Unpacking libopenblas0:arm64 (0.3.26+ds-1) ... 661s Selecting previously unselected package libopenblas-pthread-dev:arm64. 661s Preparing to unpack .../30-libopenblas-pthread-dev_0.3.26+ds-1_arm64.deb ... 661s Unpacking libopenblas-pthread-dev:arm64 (0.3.26+ds-1) ... 662s Selecting previously unselected package libopenblas-dev:arm64. 662s Preparing to unpack .../31-libopenblas-dev_0.3.26+ds-1_arm64.deb ... 662s Unpacking libopenblas-dev:arm64 (0.3.26+ds-1) ... 662s Selecting previously unselected package libthai-data. 662s Preparing to unpack .../32-libthai-data_0.1.29-2_all.deb ... 662s Unpacking libthai-data (0.1.29-2) ... 662s Selecting previously unselected package libthai0:arm64. 662s Preparing to unpack .../33-libthai0_0.1.29-2_arm64.deb ... 662s Unpacking libthai0:arm64 (0.1.29-2) ... 662s Selecting previously unselected package libpango-1.0-0:arm64. 662s Preparing to unpack .../34-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 662s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 662s Selecting previously unselected package libpangoft2-1.0-0:arm64. 662s Preparing to unpack .../35-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 662s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 662s Selecting previously unselected package libpangocairo-1.0-0:arm64. 662s Preparing to unpack .../36-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 662s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 662s Selecting previously unselected package libpaper1:arm64. 662s Preparing to unpack .../37-libpaper1_1.1.29_arm64.deb ... 662s Unpacking libpaper1:arm64 (1.1.29) ... 662s Selecting previously unselected package libpaper-utils. 662s Preparing to unpack .../38-libpaper-utils_1.1.29_arm64.deb ... 662s Unpacking libpaper-utils (1.1.29) ... 662s Selecting previously unselected package libsharpyuv0:arm64. 662s Preparing to unpack .../39-libsharpyuv0_1.3.2-0.4_arm64.deb ... 662s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 662s Selecting previously unselected package libsm6:arm64. 662s Preparing to unpack .../40-libsm6_2%3a1.2.3-1build2_arm64.deb ... 662s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 662s Selecting previously unselected package libtcl8.6:arm64. 662s Preparing to unpack .../41-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 662s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 662s Selecting previously unselected package libjbig0:arm64. 662s Preparing to unpack .../42-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 662s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 662s Selecting previously unselected package libwebp7:arm64. 662s Preparing to unpack .../43-libwebp7_1.3.2-0.4_arm64.deb ... 662s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 662s Selecting previously unselected package libtiff6:arm64. 662s Preparing to unpack .../44-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 662s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 662s Selecting previously unselected package libxft2:arm64. 662s Preparing to unpack .../45-libxft2_2.3.6-1_arm64.deb ... 662s Unpacking libxft2:arm64 (2.3.6-1) ... 662s Selecting previously unselected package libxss1:arm64. 663s Preparing to unpack .../46-libxss1_1%3a1.2.3-1build2_arm64.deb ... 663s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 663s Selecting previously unselected package libtk8.6:arm64. 663s Preparing to unpack .../47-libtk8.6_8.6.14-1_arm64.deb ... 663s Unpacking libtk8.6:arm64 (8.6.14-1) ... 663s Selecting previously unselected package libxt6:arm64. 663s Preparing to unpack .../48-libxt6_1%3a1.2.1-1.1_arm64.deb ... 663s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 663s Selecting previously unselected package zip. 663s Preparing to unpack .../49-zip_3.0-13_arm64.deb ... 663s Unpacking zip (3.0-13) ... 663s Selecting previously unselected package unzip. 663s Preparing to unpack .../50-unzip_6.0-28ubuntu3_arm64.deb ... 663s Unpacking unzip (6.0-28ubuntu3) ... 663s Selecting previously unselected package xdg-utils. 663s Preparing to unpack .../51-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 663s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 663s Selecting previously unselected package r-base-core. 663s Preparing to unpack .../52-r-base-core_4.3.2-1build1_arm64.deb ... 663s Unpacking r-base-core (4.3.2-1build1) ... 668s Selecting previously unselected package r-cran-littler. 668s Preparing to unpack .../53-r-cran-littler_0.3.19-1_arm64.deb ... 668s Unpacking r-cran-littler (0.3.19-1) ... 668s Selecting previously unselected package littler. 668s Preparing to unpack .../54-littler_0.3.19-1_all.deb ... 668s Unpacking littler (0.3.19-1) ... 668s Selecting previously unselected package r-cran-codetools. 668s Preparing to unpack .../55-r-cran-codetools_0.2-19-1_all.deb ... 668s Unpacking r-cran-codetools (0.2-19-1) ... 668s Selecting previously unselected package r-cran-iterators. 668s Preparing to unpack .../56-r-cran-iterators_1.0.14-1_all.deb ... 668s Unpacking r-cran-iterators (1.0.14-1) ... 668s Selecting previously unselected package r-cran-foreach. 668s Preparing to unpack .../57-r-cran-foreach_1.5.2-1_all.deb ... 668s Unpacking r-cran-foreach (1.5.2-1) ... 668s Selecting previously unselected package r-cran-gam. 668s Preparing to unpack .../58-r-cran-gam_1.22-3-1_arm64.deb ... 668s Unpacking r-cran-gam (1.22-3-1) ... 668s Selecting previously unselected package r-cran-cli. 668s Preparing to unpack .../59-r-cran-cli_3.6.2-1_arm64.deb ... 668s Unpacking r-cran-cli (3.6.2-1) ... 668s Selecting previously unselected package r-cran-glue. 668s Preparing to unpack .../60-r-cran-glue_1.7.0-1_arm64.deb ... 668s Unpacking r-cran-glue (1.7.0-1) ... 668s Selecting previously unselected package r-cran-rlang. 668s Preparing to unpack .../61-r-cran-rlang_1.1.3-1_arm64.deb ... 668s Unpacking r-cran-rlang (1.1.3-1) ... 668s Selecting previously unselected package r-cran-lifecycle. 668s Preparing to unpack .../62-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 668s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 668s Selecting previously unselected package r-cran-gtable. 668s Preparing to unpack .../63-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 668s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 668s Selecting previously unselected package r-cran-isoband. 668s Preparing to unpack .../64-r-cran-isoband_0.2.7-1_arm64.deb ... 668s Unpacking r-cran-isoband (0.2.7-1) ... 668s Selecting previously unselected package r-cran-mass. 668s Preparing to unpack .../65-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 668s Unpacking r-cran-mass (7.3-60.0.1-1) ... 668s Selecting previously unselected package r-cran-lattice. 668s Preparing to unpack .../66-r-cran-lattice_0.22-5-1_arm64.deb ... 668s Unpacking r-cran-lattice (0.22-5-1) ... 668s Selecting previously unselected package r-cran-nlme. 668s Preparing to unpack .../67-r-cran-nlme_3.1.164-1_arm64.deb ... 668s Unpacking r-cran-nlme (3.1.164-1) ... 668s Selecting previously unselected package r-cran-matrix. 668s Preparing to unpack .../68-r-cran-matrix_1.6-5-1_arm64.deb ... 668s Unpacking r-cran-matrix (1.6-5-1) ... 668s Selecting previously unselected package r-cran-mgcv. 668s Preparing to unpack .../69-r-cran-mgcv_1.9-1-1_arm64.deb ... 668s Unpacking r-cran-mgcv (1.9-1-1) ... 668s Selecting previously unselected package r-cran-farver. 668s Preparing to unpack .../70-r-cran-farver_2.1.1-1_arm64.deb ... 668s Unpacking r-cran-farver (2.1.1-1) ... 668s Selecting previously unselected package r-cran-labeling. 668s Preparing to unpack .../71-r-cran-labeling_0.4.3-1_all.deb ... 668s Unpacking r-cran-labeling (0.4.3-1) ... 668s Selecting previously unselected package r-cran-colorspace. 668s Preparing to unpack .../72-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 668s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 668s Selecting previously unselected package r-cran-munsell. 668s Preparing to unpack .../73-r-cran-munsell_0.5.0-2build1_all.deb ... 668s Unpacking r-cran-munsell (0.5.0-2build1) ... 668s Selecting previously unselected package r-cran-r6. 668s Preparing to unpack .../74-r-cran-r6_2.5.1-1_all.deb ... 668s Unpacking r-cran-r6 (2.5.1-1) ... 668s Selecting previously unselected package r-cran-rcolorbrewer. 668s Preparing to unpack .../75-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 668s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 668s Selecting previously unselected package r-cran-viridislite. 668s Preparing to unpack .../76-r-cran-viridislite_0.4.2-2_all.deb ... 668s Unpacking r-cran-viridislite (0.4.2-2) ... 668s Selecting previously unselected package r-cran-scales. 668s Preparing to unpack .../77-r-cran-scales_1.3.0-1_all.deb ... 668s Unpacking r-cran-scales (1.3.0-1) ... 668s Selecting previously unselected package r-cran-fansi. 668s Preparing to unpack .../78-r-cran-fansi_1.0.5-1_arm64.deb ... 668s Unpacking r-cran-fansi (1.0.5-1) ... 668s Selecting previously unselected package r-cran-magrittr. 668s Preparing to unpack .../79-r-cran-magrittr_2.0.3-1_arm64.deb ... 668s Unpacking r-cran-magrittr (2.0.3-1) ... 668s Selecting previously unselected package r-cran-utf8. 668s Preparing to unpack .../80-r-cran-utf8_1.2.4-1_arm64.deb ... 668s Unpacking r-cran-utf8 (1.2.4-1) ... 668s Selecting previously unselected package r-cran-vctrs. 668s Preparing to unpack .../81-r-cran-vctrs_0.6.5-1_arm64.deb ... 668s Unpacking r-cran-vctrs (0.6.5-1) ... 668s Selecting previously unselected package r-cran-pillar. 668s Preparing to unpack .../82-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 668s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 668s Selecting previously unselected package r-cran-pkgconfig. 668s Preparing to unpack .../83-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 668s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 668s Selecting previously unselected package r-cran-tibble. 668s Preparing to unpack .../84-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 668s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 668s Selecting previously unselected package r-cran-withr. 668s Preparing to unpack .../85-r-cran-withr_2.5.0-1_all.deb ... 668s Unpacking r-cran-withr (2.5.0-1) ... 668s Selecting previously unselected package r-cran-ggplot2. 668s Preparing to unpack .../86-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 668s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 668s Selecting previously unselected package r-cran-inline. 668s Preparing to unpack .../87-r-cran-inline_0.3.19-2_all.deb ... 668s Unpacking r-cran-inline (0.3.19-2) ... 668s Selecting previously unselected package seqtk. 668s Preparing to unpack .../88-seqtk_1.4-2_arm64.deb ... 668s Unpacking seqtk (1.4-2) ... 668s Selecting previously unselected package python3-pysam. 668s Preparing to unpack .../89-python3-pysam_0.22.0+ds-1_arm64.deb ... 668s Unpacking python3-pysam (0.22.0+ds-1) ... 668s Selecting previously unselected package r-cran-pkgkitten. 668s Preparing to unpack .../90-r-cran-pkgkitten_0.2.3-1_all.deb ... 668s Unpacking r-cran-pkgkitten (0.2.3-1) ... 668s Selecting previously unselected package r-cran-rcpp. 668s Preparing to unpack .../91-r-cran-rcpp_1.0.12-1_arm64.deb ... 668s Unpacking r-cran-rcpp (1.0.12-1) ... 668s Selecting previously unselected package r-cran-rcppgsl. 668s Preparing to unpack .../92-r-cran-rcppgsl_0.3.13-1_arm64.deb ... 668s Unpacking r-cran-rcppgsl (0.3.13-1) ... 668s Selecting previously unselected package mapdamage. 668s Preparing to unpack .../93-mapdamage_2.2.1+dfsg-3_all.deb ... 668s Unpacking mapdamage (2.2.1+dfsg-3) ... 668s Selecting previously unselected package autopkgtest-satdep. 668s Preparing to unpack .../94-2-autopkgtest-satdep.deb ... 668s Unpacking autopkgtest-satdep (0) ... 668s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 668s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 668s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 668s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 668s Setting up libpaper1:arm64 (1.1.29) ... 668s 668s Creating config file /etc/papersize with new version 668s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 668s Setting up seqtk (1.4-2) ... 668s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 668s Setting up libdatrie1:arm64 (0.2.13-3) ... 668s Setting up libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 668s Setting up libxcb-render0:arm64 (1.15-1) ... 668s Setting up unzip (6.0-28ubuntu3) ... 668s Setting up x11-common (1:7.7+23ubuntu2) ... 670s Setting up libdeflate0:arm64 (1.19-1) ... 670s Setting up libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 670s Setting up libxcb-shm0:arm64 (1.15-1) ... 670s Setting up libpaper-utils (1.1.29) ... 670s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 670s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 670s Setting up zip (3.0-13) ... 670s Setting up libblas3:arm64 (3.12.0-3) ... 670s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 670s Setting up fonts-dejavu-mono (2.37-8) ... 670s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 670s Setting up fonts-dejavu-core (2.37-8) ... 670s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 670s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 670s Setting up libwebp7:arm64 (1.3.2-0.4) ... 670s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 670s Setting up libthai-data (0.1.29-2) ... 670s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 670s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 670s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 670s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 670s Setting up libice6:arm64 (2:1.0.10-1build2) ... 670s Setting up liblapack3:arm64 (3.12.0-3) ... 670s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 670s Setting up libhts3:arm64 (1.18+ds-1) ... 670s Setting up libgsl-dev (2.7.1+dfsg-6ubuntu1) ... 670s Setting up libopenblas0-pthread:arm64 (0.3.26+ds-1) ... 670s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 670s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 670s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode 670s Setting up python3-pysam (0.22.0+ds-1) ... 670s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 670s Setting up libthai0:arm64 (0.1.29-2) ... 670s Setting up libopenblas0:arm64 (0.3.26+ds-1) ... 670s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 670s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 670s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 670s Setting up libopenblas-pthread-dev:arm64 (0.3.26+ds-1) ... 670s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 670s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 670s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode 670s Setting up fontconfig (2.15.0-1ubuntu1) ... 672s Regenerating fonts cache... done. 672s Setting up libxft2:arm64 (2.3.6-1) ... 672s Setting up libtk8.6:arm64 (8.6.14-1) ... 672s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 672s Setting up libcairo2:arm64 (1.18.0-1) ... 672s Setting up libopenblas-dev:arm64 (0.3.26+ds-1) ... 672s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 672s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 672s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 672s Setting up r-base-core (4.3.2-1build1) ... 676s 676s Creating config file /etc/R/Renviron with new version 676s Setting up r-cran-labeling (0.4.3-1) ... 676s Setting up r-cran-lattice (0.22-5-1) ... 676s Setting up r-cran-nlme (3.1.164-1) ... 676s Setting up r-cran-farver (2.1.1-1) ... 676s Setting up r-cran-viridislite (0.4.2-2) ... 676s Setting up r-cran-r6 (2.5.1-1) ... 676s Setting up r-cran-pkgkitten (0.2.3-1) ... 676s Setting up r-cran-magrittr (2.0.3-1) ... 676s Setting up r-cran-littler (0.3.19-1) ... 676s Setting up r-cran-rcpp (1.0.12-1) ... 676s Setting up r-cran-codetools (0.2-19-1) ... 676s Setting up r-cran-inline (0.3.19-2) ... 676s Setting up r-cran-rlang (1.1.3-1) ... 676s Setting up littler (0.3.19-1) ... 676s Setting up r-cran-withr (2.5.0-1) ... 676s Setting up r-cran-iterators (1.0.14-1) ... 676s Setting up r-cran-foreach (1.5.2-1) ... 676s Setting up r-cran-fansi (1.0.5-1) ... 676s Setting up r-cran-mass (7.3-60.0.1-1) ... 676s Setting up r-cran-glue (1.7.0-1) ... 676s Setting up r-cran-gam (1.22-3-1) ... 676s Setting up r-cran-cli (3.6.2-1) ... 676s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 676s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 676s Setting up r-cran-utf8 (1.2.4-1) ... 676s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 676s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 676s Setting up r-cran-isoband (0.2.7-1) ... 676s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 676s Setting up r-cran-matrix (1.6-5-1) ... 676s Setting up r-cran-mgcv (1.9-1-1) ... 676s Setting up r-cran-rcppgsl (0.3.13-1) ... 676s Setting up r-cran-vctrs (0.6.5-1) ... 676s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 676s Setting up r-cran-munsell (0.5.0-2build1) ... 676s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 676s Setting up r-cran-scales (1.3.0-1) ... 676s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 676s Setting up mapdamage (2.2.1+dfsg-3) ... 676s Setting up autopkgtest-satdep (0) ... 676s Processing triggers for man-db (2.12.0-3) ... 676s Processing triggers for install-info (7.1-3) ... 676s Processing triggers for libc-bin (2.39-0ubuntu6) ... 686s (Reading database ... 82414 files and directories currently installed.) 686s Removing autopkgtest-satdep (0) ... 688s autopkgtest [17:42:07]: test run-r-packages-check: [----------------------- 694s All R packages are present 694s autopkgtest [17:42:12]: test run-r-packages-check: -----------------------] 694s autopkgtest [17:42:13]: test run-r-packages-check: - - - - - - - - - - results - - - - - - - - - - 694s run-r-packages-check PASS 695s autopkgtest [17:42:14]: @@@@@@@@@@@@@@@@@@@@ summary 695s run-unit-test PASS 695s run-r-packages-check PASS 708s Creating nova instance adt-noble-arm64-mapdamage-20240324-165511-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)... 708s Creating nova instance adt-noble-arm64-mapdamage-20240324-165511-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)...