0s autopkgtest [17:17:04]: starting date and time: 2024-03-16 17:17:04+0000 0s autopkgtest [17:17:04]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:17:04]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lyd7m5ij/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade mapdamage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-8.secgroup --name adt-noble-arm64-mapdamage-20240316-171703-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 120s autopkgtest [17:19:04]: testbed dpkg architecture: arm64 120s autopkgtest [17:19:04]: testbed apt version: 2.7.12 120s autopkgtest [17:19:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 121s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 122s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 122s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 122s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 123s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 123s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 123s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 123s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 123s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 123s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 123s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 123s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 123s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 124s Fetched 9063 kB in 3s (3353 kB/s) 125s Reading package lists... 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 129s The following packages will be REMOVED: 129s libglib2.0-0 libssl3 129s The following NEW packages will be installed: 129s libglib2.0-0t64 libssl3t64 xdg-user-dirs 129s The following packages have been kept back: 129s curl 129s The following packages will be upgraded: 129s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 129s ubuntu-minimal ubuntu-standard 129s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 129s Need to get 4613 kB of archives. 129s After this operation, 211 kB of additional disk space will be used. 129s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 129s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 130s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 130s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 130s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 130s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 130s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 130s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 130s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 130s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 130s Fetched 4613 kB in 1s (6303 kB/s) 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 130s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 130s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 131s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 131s udisks2 depends on libglib2.0-0 (>= 2.77.0). 131s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 131s python3-gi depends on libglib2.0-0 (>= 2.77.0). 131s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 131s netplan.io depends on libglib2.0-0 (>= 2.70.0). 131s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 131s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 131s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 131s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 131s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 131s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 131s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 131s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 131s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 131s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 131s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 131s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 131s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 131s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 131s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 131s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 131s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 131s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 131s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 131s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 131s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 131s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 131s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 131s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 131s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 131s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 131s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 131s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 131s fwupd depends on libglib2.0-0 (>= 2.79.0). 131s bolt depends on libglib2.0-0 (>= 2.56.0). 131s 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 131s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 131s Selecting previously unselected package libglib2.0-0t64:arm64. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 131s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 131s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 131s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 131s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 131s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 131s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 131s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 131s wget depends on libssl3 (>= 3.0.0). 131s u-boot-tools depends on libssl3 (>= 3.0.0). 131s tnftp depends on libssl3 (>= 3.0.0). 131s tcpdump depends on libssl3 (>= 3.0.0). 131s systemd-resolved depends on libssl3 (>= 3.0.0). 131s systemd depends on libssl3 (>= 3.0.0). 131s sudo depends on libssl3 (>= 3.0.0). 131s sbsigntool depends on libssl3 (>= 3.0.0). 131s rsync depends on libssl3 (>= 3.0.0). 131s python3-cryptography depends on libssl3 (>= 3.0.0). 131s openssh-server depends on libssl3 (>= 3.0.10). 131s openssh-client depends on libssl3 (>= 3.0.10). 131s mtd-utils depends on libssl3 (>= 3.0.0). 131s mokutil depends on libssl3 (>= 3.0.0). 131s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 131s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 131s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 131s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 131s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 131s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 131s libnvme1 depends on libssl3 (>= 3.0.0). 131s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 131s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 131s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 131s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 131s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 131s kmod depends on libssl3 (>= 3.0.0). 131s dhcpcd-base depends on libssl3 (>= 3.0.0). 131s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 131s 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 131s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 131s Selecting previously unselected package libssl3t64:arm64. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 131s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 131s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 131s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 131s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 131s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 131s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 131s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 131s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 131s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 131s Unpacking ubuntu-minimal (1.536) over (1.535) ... 131s Selecting previously unselected package xdg-user-dirs. 131s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 131s Unpacking xdg-user-dirs (0.18-1) ... 132s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 132s Unpacking ubuntu-standard (1.536) over (1.535) ... 132s Setting up ubuntu-minimal (1.536) ... 132s Setting up xdg-user-dirs (0.18-1) ... 132s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 132s Setting up libtirpc-common (1.3.4+ds-1.1) ... 132s Setting up ubuntu-standard (1.536) ... 132s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 132s No schema files found: doing nothing. 132s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 132s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 132s Setting up openssl (3.0.13-0ubuntu1) ... 132s Setting up readline-common (8.2-3.1) ... 132s Processing triggers for man-db (2.12.0-3) ... 133s Processing triggers for install-info (7.1-3) ... 133s Processing triggers for libc-bin (2.39-0ubuntu2) ... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 136s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 136s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 136s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 136s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 138s Reading package lists... 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Calculating upgrade... 140s The following packages have been kept back: 140s curl 140s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 143s autopkgtest [17:19:27]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 144s autopkgtest [17:19:28]: @@@@@@@@@@@@@@@@@@@@ apt-source mapdamage 145s Get:1 http://ftpmaster.internal/ubuntu noble/universe mapdamage 2.2.1+dfsg-3 (dsc) [2232 B] 145s Get:2 http://ftpmaster.internal/ubuntu noble/universe mapdamage 2.2.1+dfsg-3 (tar) [36.2 kB] 145s Get:3 http://ftpmaster.internal/ubuntu noble/universe mapdamage 2.2.1+dfsg-3 (diff) [7764 B] 146s gpgv: Signature made Thu Nov 24 11:25:05 2022 UTC 146s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 146s gpgv: issuer "tille@debian.org" 146s gpgv: Can't check signature: No public key 146s dpkg-source: warning: cannot verify inline signature for ./mapdamage_2.2.1+dfsg-3.dsc: no acceptable signature found 146s autopkgtest [17:19:30]: testing package mapdamage version 2.2.1+dfsg-3 146s autopkgtest [17:19:30]: build not needed 146s autopkgtest [17:19:30]: test run-unit-test: preparing testbed 147s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Starting pkgProblemResolver with broken count: 0 148s Starting 2 pkgProblemResolver with broken count: 0 148s Done 149s The following additional packages will be installed: 149s cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu curl fontconfig 149s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc gcc-13 149s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 149s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu libasan8 libatomic1 149s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 149s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 149s libgfortran5 libgomp1 libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 149s libharfbuzz0b libhts3 libhtscodecs2 libhwasan0 libice6 libisl23 libitm1 149s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 liblsan0 libmpc3 149s libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 149s libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 149s libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpsl5t64 149s libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 149s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 149s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 149s linux-libc-dev littler mapdamage python3-pysam r-base-core r-cran-cli 149s r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver r-cran-foreach 149s r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-inline 149s r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 149s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 149s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 149s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 149s r-cran-rlang r-cran-runit r-cran-scales r-cran-tibble r-cran-utf8 149s r-cran-vctrs r-cran-viridislite r-cran-withr rpcsvc-proto seqtk unzip 149s x11-common xdg-utils zip 149s Suggested packages: 149s cpp-doc gcc-13-locales cpp-13-doc gcc-multilib manpages-dev autoconf 149s automake libtool flex bison gdb gcc-doc gcc-13-doc gdb-aarch64-linux-gnu 149s gfortran-doc gfortran-13-doc libcoarrays-dev glibc-doc gsl-ref-psdoc 149s | gsl-doc-pdf | gsl-doc-info | gsl-ref-html tcl8.6 tk8.6 elpa-ess r-doc-info 149s | r-doc-pdf r-mathlib r-base-html r-cran-kernsmooth r-cran-kernlab 149s r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr 149s r-cran-png r-cran-jpeg r-cran-knitr r-cran-rmarkdown r-cran-viridis 149s r-cran-covr r-cran-magick r-cran-sf r-cran-getopt r-cran-bit64 r-cran-dbi 149s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-stringi 149s r-cran-survival r-cran-units r-cran-vdiffr r-cran-testthat r-cran-bench 149s r-cran-blob r-cran-brio r-cran-callr r-cran-crayon r-cran-evaluate 149s r-cran-here r-cran-hms r-cran-htmltools r-cran-pkgbuild r-cran-pkgload 149s r-cran-purrr r-cran-tidyr 149s Recommended packages: 149s manpages manpages-dev libc-devtools r-recommended r-base-dev r-doc-html 149s r-cran-callr r-cran-covr r-cran-crayon r-cran-digest r-cran-htmltools 149s r-cran-htmlwidgets r-cran-knitr r-cran-mockery r-cran-processx r-cran-ps 149s r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-testthat 149s r-cran-whoami r-cran-unitizer r-cran-interp r-cran-dplyr r-cran-hexbin 149s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 149s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 149s r-cran-vdiffr r-cran-xml2 r-cran-dbi r-cran-rsqlite r-cran-waldo 149s r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-fs r-cran-usethis 149s r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-stringi r-cran-data.table 149s r-cran-mockr r-cran-formattable r-cran-generics r-cran-pkgdown 149s r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 149s x11-utils x11-xserver-utils 149s The following packages will be REMOVED: 149s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 149s The following NEW packages will be installed: 149s autopkgtest-satdep cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 149s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc gcc-13 149s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 149s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu libasan8 libatomic1 149s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 149s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 149s libgfortran5 libgomp1 libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 149s libharfbuzz0b libhts3 libhtscodecs2 libhwasan0 libice6 libisl23 libitm1 149s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 liblsan0 libmpc3 149s libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 149s libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 149s libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpsl5t64 149s libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 149s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 149s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 149s linux-libc-dev littler mapdamage python3-pysam r-base-core r-cran-cli 149s r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver r-cran-foreach 149s r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-inline 149s r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 149s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 149s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 149s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 149s r-cran-rlang r-cran-runit r-cran-scales r-cran-tibble r-cran-utf8 149s r-cran-vctrs r-cran-viridislite r-cran-withr rpcsvc-proto seqtk unzip 149s x11-common xdg-utils zip 149s The following packages will be upgraded: 149s curl 149s 1 upgraded, 132 newly installed, 5 to remove and 0 not upgraded. 149s Need to get 145 MB/145 MB of archives. 149s After this operation, 443 MB of additional disk space will be used. 149s Get:1 /tmp/autopkgtest.9a0gDn/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B] 149s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 149s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 149s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 150s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 150s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 150s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 150s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 150s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 150s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 150s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 150s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 150s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 150s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 150s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 150s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 150s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 150s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 150s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 150s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 150s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 150s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 150s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 150s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 150s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 150s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 150s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 150s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 150s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 151s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 151s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 151s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 151s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 151s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 151s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 151s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 151s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 151s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 151s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 151s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 151s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 151s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 151s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 151s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 151s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 151s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 151s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 151s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 151s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 151s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 151s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 151s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 151s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 151s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 151s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libgslcblas0 arm64 2.7.1+dfsg-6ubuntu1 [72.5 kB] 151s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl27 arm64 2.7.1+dfsg-6ubuntu1 [912 kB] 151s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl-dev arm64 2.7.1+dfsg-6ubuntu1 [1185 kB] 151s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 151s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 151s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 151s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 151s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 151s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 151s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 151s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0-pthread arm64 0.3.26+ds-1 [5464 kB] 152s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 152s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 152s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0 arm64 0.3.26+ds-1 [6170 B] 152s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-pthread-dev arm64 0.3.26+ds-1 [3790 kB] 152s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-dev arm64 0.3.26+ds-1 [19.6 kB] 152s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 152s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 152s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 152s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 152s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 152s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 152s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 152s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 152s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 152s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 152s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 152s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 152s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 152s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 152s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 152s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 152s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 152s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 152s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 152s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 152s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 153s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 153s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 153s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 153s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 153s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 153s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gam arm64 1.22-3-1 [407 kB] 153s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 153s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 153s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 153s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 153s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 153s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 153s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 153s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 153s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 153s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 154s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 154s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 154s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 154s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 154s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 154s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 154s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 154s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 154s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 154s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 154s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 154s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 154s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 154s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 154s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 154s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 154s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 154s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 154s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-inline all 0.3.19-2 [129 kB] 154s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 seqtk arm64 1.4-2 [34.5 kB] 154s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB] 154s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 154s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 154s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppgsl arm64 0.3.13-1 [198 kB] 154s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 mapdamage all 2.2.1+dfsg-3 [43.1 kB] 154s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 156s Preconfiguring packages ... 156s Fetched 145 MB in 5s (26.9 MB/s) 156s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 156s wget depends on libpsl5 (>= 0.16.0). 156s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 156s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 156s 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 156s Removing libpsl5:arm64 (0.21.2-1build1) ... 157s Selecting previously unselected package libpsl5t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 157s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 157s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 157s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 157s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 157s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 157s Selecting previously unselected package libcurl4t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 157s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 157s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 157s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 157s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 157s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 157s Removing libpng16-16:arm64 (1.6.43-1) ... 157s Selecting previously unselected package libpng16-16t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 157s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 157s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 157s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 157s parted depends on libreadline8 (>= 6.0). 157s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 157s gpgsm depends on libreadline8 (>= 6.0). 157s gpgconf depends on libreadline8 (>= 6.0). 157s gpg depends on libreadline8 (>= 6.0). 157s gawk depends on libreadline8 (>= 6.0). 157s fdisk depends on libreadline8 (>= 6.0). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 157s Removing libreadline8:arm64 (8.2-3) ... 157s Selecting previously unselected package libreadline8t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 158s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 158s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 158s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 158s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 158s lsof depends on libtirpc3 (>= 1.0.2). 158s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 158s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 158s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 158s iproute2 depends on libtirpc3 (>= 1.0.2). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 158s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 158s Selecting previously unselected package libtirpc3t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 158s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 158s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 158s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 158s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 158s Selecting previously unselected package libisl23:arm64. 158s Preparing to unpack .../001-libisl23_0.26-3_arm64.deb ... 158s Unpacking libisl23:arm64 (0.26-3) ... 158s Selecting previously unselected package libmpc3:arm64. 158s Preparing to unpack .../002-libmpc3_1.3.1-1_arm64.deb ... 158s Unpacking libmpc3:arm64 (1.3.1-1) ... 158s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 158s Preparing to unpack .../003-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 158s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 158s Selecting previously unselected package cpp-13. 158s Preparing to unpack .../004-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 158s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 158s Selecting previously unselected package cpp-aarch64-linux-gnu. 158s Preparing to unpack .../005-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 158s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 158s Selecting previously unselected package cpp. 159s Preparing to unpack .../006-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 159s Unpacking cpp (4:13.2.0-7ubuntu1) ... 159s Selecting previously unselected package fonts-dejavu-mono. 159s Preparing to unpack .../007-fonts-dejavu-mono_2.37-8_all.deb ... 159s Unpacking fonts-dejavu-mono (2.37-8) ... 159s Selecting previously unselected package fonts-dejavu-core. 159s Preparing to unpack .../008-fonts-dejavu-core_2.37-8_all.deb ... 159s Unpacking fonts-dejavu-core (2.37-8) ... 159s Selecting previously unselected package fontconfig-config. 159s Preparing to unpack .../009-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 159s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 159s Selecting previously unselected package libfontconfig1:arm64. 159s Preparing to unpack .../010-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 159s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 159s Selecting previously unselected package fontconfig. 159s Preparing to unpack .../011-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 159s Unpacking fontconfig (2.15.0-1ubuntu1) ... 159s Selecting previously unselected package libcc1-0:arm64. 159s Preparing to unpack .../012-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libgomp1:arm64. 159s Preparing to unpack .../013-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libitm1:arm64. 159s Preparing to unpack .../014-libitm1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libatomic1:arm64. 159s Preparing to unpack .../015-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libasan8:arm64. 160s Preparing to unpack .../016-libasan8_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package liblsan0:arm64. 160s Preparing to unpack .../017-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package libtsan2:arm64. 160s Preparing to unpack .../018-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package libubsan1:arm64. 160s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package libhwasan0:arm64. 160s Preparing to unpack .../020-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package libgcc-13-dev:arm64. 160s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 160s Preparing to unpack .../022-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package gcc-13. 161s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package gcc-aarch64-linux-gnu. 161s Preparing to unpack .../024-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package gcc. 161s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking gcc (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package libgfortran5:arm64. 161s Preparing to unpack .../026-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 161s Selecting previously unselected package libgfortran-13-dev:arm64. 161s Preparing to unpack .../027-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package libc-dev-bin. 161s Preparing to unpack .../028-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 161s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 161s Selecting previously unselected package linux-libc-dev:arm64. 161s Preparing to unpack .../029-linux-libc-dev_6.8.0-11.11_arm64.deb ... 161s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 161s Selecting previously unselected package libcrypt-dev:arm64. 162s Preparing to unpack .../030-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 162s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 162s Selecting previously unselected package libtirpc-dev:arm64. 162s Preparing to unpack .../031-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 162s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 162s Selecting previously unselected package libnsl-dev:arm64. 162s Preparing to unpack .../032-libnsl-dev_1.3.0-3_arm64.deb ... 162s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 162s Selecting previously unselected package rpcsvc-proto. 162s Preparing to unpack .../033-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 162s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 162s Selecting previously unselected package libc6-dev:arm64. 162s Preparing to unpack .../034-libc6-dev_2.39-0ubuntu2_arm64.deb ... 162s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 162s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 162s Preparing to unpack .../035-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package gfortran-13. 162s Preparing to unpack .../036-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package gfortran-aarch64-linux-gnu. 162s Preparing to unpack .../037-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 162s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 162s Selecting previously unselected package gfortran. 162s Preparing to unpack .../038-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 162s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 162s Selecting previously unselected package libblas3:arm64. 162s Preparing to unpack .../039-libblas3_3.12.0-3_arm64.deb ... 162s Unpacking libblas3:arm64 (3.12.0-3) ... 162s Selecting previously unselected package libpixman-1-0:arm64. 163s Preparing to unpack .../040-libpixman-1-0_0.42.2-1_arm64.deb ... 163s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 163s Selecting previously unselected package libxcb-render0:arm64. 163s Preparing to unpack .../041-libxcb-render0_1.15-1_arm64.deb ... 163s Unpacking libxcb-render0:arm64 (1.15-1) ... 163s Selecting previously unselected package libxcb-shm0:arm64. 163s Preparing to unpack .../042-libxcb-shm0_1.15-1_arm64.deb ... 163s Unpacking libxcb-shm0:arm64 (1.15-1) ... 163s Selecting previously unselected package libxrender1:arm64. 163s Preparing to unpack .../043-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 163s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 163s Selecting previously unselected package libcairo2:arm64. 163s Preparing to unpack .../044-libcairo2_1.18.0-1_arm64.deb ... 163s Unpacking libcairo2:arm64 (1.18.0-1) ... 163s Selecting previously unselected package libdatrie1:arm64. 163s Preparing to unpack .../045-libdatrie1_0.2.13-3_arm64.deb ... 163s Unpacking libdatrie1:arm64 (0.2.13-3) ... 163s Selecting previously unselected package libdeflate0:arm64. 163s Preparing to unpack .../046-libdeflate0_1.19-1_arm64.deb ... 163s Unpacking libdeflate0:arm64 (1.19-1) ... 163s Selecting previously unselected package libgraphite2-3:arm64. 163s Preparing to unpack .../047-libgraphite2-3_1.3.14-2_arm64.deb ... 163s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 163s Selecting previously unselected package libgslcblas0:arm64. 163s Preparing to unpack .../048-libgslcblas0_2.7.1+dfsg-6ubuntu1_arm64.deb ... 163s Unpacking libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 163s Selecting previously unselected package libgsl27:arm64. 163s Preparing to unpack .../049-libgsl27_2.7.1+dfsg-6ubuntu1_arm64.deb ... 163s Unpacking libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 163s Selecting previously unselected package libgsl-dev. 163s Preparing to unpack .../050-libgsl-dev_2.7.1+dfsg-6ubuntu1_arm64.deb ... 163s Unpacking libgsl-dev (2.7.1+dfsg-6ubuntu1) ... 163s Selecting previously unselected package libharfbuzz0b:arm64. 163s Preparing to unpack .../051-libharfbuzz0b_8.3.0-2_arm64.deb ... 163s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 163s Selecting previously unselected package libhtscodecs2:arm64. 163s Preparing to unpack .../052-libhtscodecs2_1.6.0-1_arm64.deb ... 163s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 163s Selecting previously unselected package libhts3:arm64. 163s Preparing to unpack .../053-libhts3_1.18+ds-1_arm64.deb ... 163s Unpacking libhts3:arm64 (1.18+ds-1) ... 163s Selecting previously unselected package x11-common. 163s Preparing to unpack .../054-x11-common_1%3a7.7+23ubuntu2_all.deb ... 163s Unpacking x11-common (1:7.7+23ubuntu2) ... 163s Selecting previously unselected package libice6:arm64. 163s Preparing to unpack .../055-libice6_2%3a1.0.10-1build2_arm64.deb ... 163s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 163s Selecting previously unselected package libjpeg-turbo8:arm64. 163s Preparing to unpack .../056-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 163s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 163s Selecting previously unselected package libjpeg8:arm64. 163s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_arm64.deb ... 163s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 163s Selecting previously unselected package libopenblas0-pthread:arm64. 163s Preparing to unpack .../058-libopenblas0-pthread_0.3.26+ds-1_arm64.deb ... 163s Unpacking libopenblas0-pthread:arm64 (0.3.26+ds-1) ... 164s Selecting previously unselected package liblapack3:arm64. 164s Preparing to unpack .../059-liblapack3_3.12.0-3_arm64.deb ... 164s Unpacking liblapack3:arm64 (3.12.0-3) ... 164s Selecting previously unselected package liblerc4:arm64. 164s Preparing to unpack .../060-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 164s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 164s Selecting previously unselected package libopenblas0:arm64. 164s Preparing to unpack .../061-libopenblas0_0.3.26+ds-1_arm64.deb ... 164s Unpacking libopenblas0:arm64 (0.3.26+ds-1) ... 164s Selecting previously unselected package libopenblas-pthread-dev:arm64. 164s Preparing to unpack .../062-libopenblas-pthread-dev_0.3.26+ds-1_arm64.deb ... 164s Unpacking libopenblas-pthread-dev:arm64 (0.3.26+ds-1) ... 164s Selecting previously unselected package libopenblas-dev:arm64. 164s Preparing to unpack .../063-libopenblas-dev_0.3.26+ds-1_arm64.deb ... 164s Unpacking libopenblas-dev:arm64 (0.3.26+ds-1) ... 164s Selecting previously unselected package libthai-data. 164s Preparing to unpack .../064-libthai-data_0.1.29-2_all.deb ... 164s Unpacking libthai-data (0.1.29-2) ... 164s Selecting previously unselected package libthai0:arm64. 164s Preparing to unpack .../065-libthai0_0.1.29-2_arm64.deb ... 164s Unpacking libthai0:arm64 (0.1.29-2) ... 164s Selecting previously unselected package libpango-1.0-0:arm64. 164s Preparing to unpack .../066-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 164s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 164s Selecting previously unselected package libpangoft2-1.0-0:arm64. 164s Preparing to unpack .../067-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 164s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 164s Selecting previously unselected package libpangocairo-1.0-0:arm64. 164s Preparing to unpack .../068-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 164s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 164s Selecting previously unselected package libpaper1:arm64. 164s Preparing to unpack .../069-libpaper1_1.1.29_arm64.deb ... 164s Unpacking libpaper1:arm64 (1.1.29) ... 164s Selecting previously unselected package libpaper-utils. 165s Preparing to unpack .../070-libpaper-utils_1.1.29_arm64.deb ... 165s Unpacking libpaper-utils (1.1.29) ... 165s Selecting previously unselected package libsharpyuv0:arm64. 165s Preparing to unpack .../071-libsharpyuv0_1.3.2-0.4_arm64.deb ... 165s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 165s Selecting previously unselected package libsm6:arm64. 165s Preparing to unpack .../072-libsm6_2%3a1.2.3-1build2_arm64.deb ... 165s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 165s Selecting previously unselected package libtcl8.6:arm64. 165s Preparing to unpack .../073-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 165s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 165s Selecting previously unselected package libjbig0:arm64. 165s Preparing to unpack .../074-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 165s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 165s Selecting previously unselected package libwebp7:arm64. 165s Preparing to unpack .../075-libwebp7_1.3.2-0.4_arm64.deb ... 165s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 165s Selecting previously unselected package libtiff6:arm64. 165s Preparing to unpack .../076-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 165s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 165s Selecting previously unselected package libxft2:arm64. 165s Preparing to unpack .../077-libxft2_2.3.6-1_arm64.deb ... 165s Unpacking libxft2:arm64 (2.3.6-1) ... 165s Selecting previously unselected package libxss1:arm64. 165s Preparing to unpack .../078-libxss1_1%3a1.2.3-1build2_arm64.deb ... 165s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 165s Selecting previously unselected package libtk8.6:arm64. 165s Preparing to unpack .../079-libtk8.6_8.6.13-2_arm64.deb ... 165s Unpacking libtk8.6:arm64 (8.6.13-2) ... 166s Selecting previously unselected package libxt6t64:arm64. 166s Preparing to unpack .../080-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 166s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 166s Selecting previously unselected package zip. 166s Preparing to unpack .../081-zip_3.0-13_arm64.deb ... 166s Unpacking zip (3.0-13) ... 166s Selecting previously unselected package unzip. 166s Preparing to unpack .../082-unzip_6.0-28ubuntu3_arm64.deb ... 166s Unpacking unzip (6.0-28ubuntu3) ... 166s Selecting previously unselected package xdg-utils. 166s Preparing to unpack .../083-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 166s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 166s Selecting previously unselected package r-base-core. 166s Preparing to unpack .../084-r-base-core_4.3.3-2build1_arm64.deb ... 166s Unpacking r-base-core (4.3.3-2build1) ... 166s Selecting previously unselected package r-cran-littler. 166s Preparing to unpack .../085-r-cran-littler_0.3.19-1_arm64.deb ... 166s Unpacking r-cran-littler (0.3.19-1) ... 166s Selecting previously unselected package littler. 166s Preparing to unpack .../086-littler_0.3.19-1_all.deb ... 166s Unpacking littler (0.3.19-1) ... 166s Selecting previously unselected package r-cran-codetools. 166s Preparing to unpack .../087-r-cran-codetools_0.2-19-1_all.deb ... 166s Unpacking r-cran-codetools (0.2-19-1) ... 166s Selecting previously unselected package r-cran-iterators. 166s Preparing to unpack .../088-r-cran-iterators_1.0.14-1_all.deb ... 166s Unpacking r-cran-iterators (1.0.14-1) ... 167s Selecting previously unselected package r-cran-foreach. 167s Preparing to unpack .../089-r-cran-foreach_1.5.2-1_all.deb ... 167s Unpacking r-cran-foreach (1.5.2-1) ... 167s Selecting previously unselected package r-cran-gam. 167s Preparing to unpack .../090-r-cran-gam_1.22-3-1_arm64.deb ... 167s Unpacking r-cran-gam (1.22-3-1) ... 167s Selecting previously unselected package r-cran-cli. 167s Preparing to unpack .../091-r-cran-cli_3.6.2-1_arm64.deb ... 167s Unpacking r-cran-cli (3.6.2-1) ... 167s Selecting previously unselected package r-cran-glue. 167s Preparing to unpack .../092-r-cran-glue_1.7.0-1_arm64.deb ... 167s Unpacking r-cran-glue (1.7.0-1) ... 167s Selecting previously unselected package r-cran-rlang. 167s Preparing to unpack .../093-r-cran-rlang_1.1.3-1_arm64.deb ... 167s Unpacking r-cran-rlang (1.1.3-1) ... 168s Selecting previously unselected package r-cran-lifecycle. 168s Preparing to unpack .../094-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 168s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 168s Selecting previously unselected package r-cran-gtable. 168s Preparing to unpack .../095-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 168s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 168s Selecting previously unselected package r-cran-isoband. 168s Preparing to unpack .../096-r-cran-isoband_0.2.7-1_arm64.deb ... 168s Unpacking r-cran-isoband (0.2.7-1) ... 168s Selecting previously unselected package r-cran-mass. 168s Preparing to unpack .../097-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 168s Unpacking r-cran-mass (7.3-60.0.1-1) ... 168s Selecting previously unselected package r-cran-lattice. 168s Preparing to unpack .../098-r-cran-lattice_0.22-5-1_arm64.deb ... 168s Unpacking r-cran-lattice (0.22-5-1) ... 168s Selecting previously unselected package r-cran-nlme. 168s Preparing to unpack .../099-r-cran-nlme_3.1.164-1_arm64.deb ... 168s Unpacking r-cran-nlme (3.1.164-1) ... 168s Selecting previously unselected package r-cran-matrix. 168s Preparing to unpack .../100-r-cran-matrix_1.6-5-1_arm64.deb ... 168s Unpacking r-cran-matrix (1.6-5-1) ... 168s Selecting previously unselected package r-cran-mgcv. 168s Preparing to unpack .../101-r-cran-mgcv_1.9-1-1_arm64.deb ... 168s Unpacking r-cran-mgcv (1.9-1-1) ... 168s Selecting previously unselected package r-cran-farver. 168s Preparing to unpack .../102-r-cran-farver_2.1.1-1_arm64.deb ... 168s Unpacking r-cran-farver (2.1.1-1) ... 168s Selecting previously unselected package r-cran-labeling. 168s Preparing to unpack .../103-r-cran-labeling_0.4.3-1_all.deb ... 168s Unpacking r-cran-labeling (0.4.3-1) ... 168s Selecting previously unselected package r-cran-colorspace. 168s Preparing to unpack .../104-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 168s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 168s Selecting previously unselected package r-cran-munsell. 168s Preparing to unpack .../105-r-cran-munsell_0.5.0-2build1_all.deb ... 168s Unpacking r-cran-munsell (0.5.0-2build1) ... 168s Selecting previously unselected package r-cran-r6. 168s Preparing to unpack .../106-r-cran-r6_2.5.1-1_all.deb ... 168s Unpacking r-cran-r6 (2.5.1-1) ... 168s Selecting previously unselected package r-cran-rcolorbrewer. 168s Preparing to unpack .../107-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 168s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 168s Selecting previously unselected package r-cran-viridislite. 168s Preparing to unpack .../108-r-cran-viridislite_0.4.2-2_all.deb ... 168s Unpacking r-cran-viridislite (0.4.2-2) ... 168s Selecting previously unselected package r-cran-scales. 168s Preparing to unpack .../109-r-cran-scales_1.3.0-1_all.deb ... 168s Unpacking r-cran-scales (1.3.0-1) ... 168s Selecting previously unselected package r-cran-fansi. 168s Preparing to unpack .../110-r-cran-fansi_1.0.5-1_arm64.deb ... 168s Unpacking r-cran-fansi (1.0.5-1) ... 168s Selecting previously unselected package r-cran-magrittr. 168s Preparing to unpack .../111-r-cran-magrittr_2.0.3-1_arm64.deb ... 168s Unpacking r-cran-magrittr (2.0.3-1) ... 168s Selecting previously unselected package r-cran-utf8. 168s Preparing to unpack .../112-r-cran-utf8_1.2.4-1_arm64.deb ... 168s Unpacking r-cran-utf8 (1.2.4-1) ... 168s Selecting previously unselected package r-cran-vctrs. 168s Preparing to unpack .../113-r-cran-vctrs_0.6.5-1_arm64.deb ... 168s Unpacking r-cran-vctrs (0.6.5-1) ... 168s Selecting previously unselected package r-cran-pillar. 169s Preparing to unpack .../114-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 169s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 169s Selecting previously unselected package r-cran-pkgconfig. 169s Preparing to unpack .../115-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 169s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 169s Selecting previously unselected package r-cran-tibble. 169s Preparing to unpack .../116-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 169s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 169s Selecting previously unselected package r-cran-withr. 169s Preparing to unpack .../117-r-cran-withr_2.5.0-1_all.deb ... 169s Unpacking r-cran-withr (2.5.0-1) ... 169s Selecting previously unselected package r-cran-ggplot2. 169s Preparing to unpack .../118-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 169s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 169s Selecting previously unselected package r-cran-inline. 169s Preparing to unpack .../119-r-cran-inline_0.3.19-2_all.deb ... 169s Unpacking r-cran-inline (0.3.19-2) ... 169s Selecting previously unselected package seqtk. 169s Preparing to unpack .../120-seqtk_1.4-2_arm64.deb ... 169s Unpacking seqtk (1.4-2) ... 169s Selecting previously unselected package python3-pysam. 169s Preparing to unpack .../121-python3-pysam_0.22.0+ds-1_arm64.deb ... 169s Unpacking python3-pysam (0.22.0+ds-1) ... 169s Selecting previously unselected package r-cran-pkgkitten. 169s Preparing to unpack .../122-r-cran-pkgkitten_0.2.3-1_all.deb ... 169s Unpacking r-cran-pkgkitten (0.2.3-1) ... 169s Selecting previously unselected package r-cran-rcpp. 170s Preparing to unpack .../123-r-cran-rcpp_1.0.12-1_arm64.deb ... 170s Unpacking r-cran-rcpp (1.0.12-1) ... 170s Selecting previously unselected package r-cran-rcppgsl. 170s Preparing to unpack .../124-r-cran-rcppgsl_0.3.13-1_arm64.deb ... 170s Unpacking r-cran-rcppgsl (0.3.13-1) ... 170s Selecting previously unselected package mapdamage. 170s Preparing to unpack .../125-mapdamage_2.2.1+dfsg-3_all.deb ... 170s Unpacking mapdamage (2.2.1+dfsg-3) ... 170s Selecting previously unselected package r-cran-runit. 170s Preparing to unpack .../126-r-cran-runit_0.4.32-3_all.deb ... 170s Unpacking r-cran-runit (0.4.32-3) ... 170s Selecting previously unselected package autopkgtest-satdep. 170s Preparing to unpack .../127-1-autopkgtest-satdep.deb ... 170s Unpacking autopkgtest-satdep (0) ... 170s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 170s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 170s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 170s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 170s Setting up libpaper1:arm64 (1.1.29) ... 171s 171s Creating config file /etc/papersize with new version 171s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 171s Setting up seqtk (1.4-2) ... 171s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 171s Setting up libdatrie1:arm64 (0.2.13-3) ... 171s Setting up libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 171s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 171s Setting up libxcb-render0:arm64 (1.15-1) ... 171s Setting up unzip (6.0-28ubuntu3) ... 171s Setting up x11-common (1:7.7+23ubuntu2) ... 171s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 171s Setting up libdeflate0:arm64 (1.19-1) ... 171s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 171s Setting up libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 171s Setting up libxcb-shm0:arm64 (1.15-1) ... 171s Setting up libpaper-utils (1.1.29) ... 171s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 171s Setting up zip (3.0-13) ... 171s Setting up libblas3:arm64 (3.12.0-3) ... 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 171s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 171s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 171s Setting up fonts-dejavu-mono (2.37-8) ... 171s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 171s Setting up libmpc3:arm64 (1.3.1-1) ... 171s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 171s Setting up fonts-dejavu-core (2.37-8) ... 171s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 171s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libwebp7:arm64 (1.3.2-0.4) ... 171s Setting up libreadline8t64:arm64 (8.2-3.1) ... 171s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libnsl-dev:arm64 (1.3.0-3) ... 171s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 171s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 171s Setting up libthai-data (0.1.29-2) ... 171s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 171s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libisl23:arm64 (0.26-3) ... 171s Setting up libc-dev-bin (2.39-0ubuntu2) ... 171s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 171s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 171s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 171s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 171s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 171s Setting up libice6:arm64 (2:1.0.10-1build2) ... 171s Setting up liblapack3:arm64 (3.12.0-3) ... 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 171s Setting up libhts3:arm64 (1.18+ds-1) ... 171s Setting up libgsl-dev (2.7.1+dfsg-6ubuntu1) ... 171s Setting up libopenblas0-pthread:arm64 (0.3.26+ds-1) ... 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode 171s Setting up python3-pysam (0.22.0+ds-1) ... 172s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 172s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 172s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 173s Setting up libthai0:arm64 (0.1.29-2) ... 173s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 173s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 173s Setting up libopenblas0:arm64 (0.3.26+ds-1) ... 173s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 173s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 173s Setting up curl (8.5.0-2ubuntu7) ... 173s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 173s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 173s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 173s Setting up libopenblas-pthread-dev:arm64 (0.3.26+ds-1) ... 173s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 173s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 173s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode 173s Setting up fontconfig (2.15.0-1ubuntu1) ... 175s Regenerating fonts cache... done. 175s Setting up libxft2:arm64 (2.3.6-1) ... 175s Setting up cpp-13 (13.2.0-17ubuntu2) ... 175s Setting up libtk8.6:arm64 (8.6.13-2) ... 175s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 175s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up libcairo2:arm64 (1.18.0-1) ... 175s Setting up libopenblas-dev:arm64 (0.3.26+ds-1) ... 175s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 175s Setting up gcc-13 (13.2.0-17ubuntu2) ... 175s Setting up cpp (4:13.2.0-7ubuntu1) ... 175s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 175s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 175s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up gcc (4:13.2.0-7ubuntu1) ... 175s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 175s Setting up r-base-core (4.3.3-2build1) ... 175s 175s Creating config file /etc/R/Renviron with new version 175s Setting up r-cran-labeling (0.4.3-1) ... 175s Setting up r-cran-lattice (0.22-5-1) ... 175s Setting up r-cran-nlme (3.1.164-1) ... 175s Setting up r-cran-farver (2.1.1-1) ... 175s Setting up r-cran-viridislite (0.4.2-2) ... 175s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up r-cran-r6 (2.5.1-1) ... 175s Setting up r-cran-pkgkitten (0.2.3-1) ... 175s Setting up r-cran-magrittr (2.0.3-1) ... 175s Setting up r-cran-littler (0.3.19-1) ... 175s Setting up r-cran-rcpp (1.0.12-1) ... 175s Setting up r-cran-codetools (0.2-19-1) ... 175s Setting up r-cran-inline (0.3.19-2) ... 175s Setting up r-cran-rlang (1.1.3-1) ... 175s Setting up littler (0.3.19-1) ... 175s Setting up r-cran-withr (2.5.0-1) ... 175s Setting up r-cran-iterators (1.0.14-1) ... 175s Setting up r-cran-foreach (1.5.2-1) ... 175s Setting up r-cran-fansi (1.0.5-1) ... 175s Setting up r-cran-mass (7.3-60.0.1-1) ... 175s Setting up r-cran-glue (1.7.0-1) ... 175s Setting up r-cran-gam (1.22-3-1) ... 175s Setting up r-cran-cli (3.6.2-1) ... 175s Setting up gfortran (4:13.2.0-7ubuntu1) ... 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 175s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 175s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 175s Setting up r-cran-utf8 (1.2.4-1) ... 175s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 175s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 175s Setting up r-cran-isoband (0.2.7-1) ... 175s Setting up r-cran-runit (0.4.32-3) ... 175s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 175s Setting up r-cran-matrix (1.6-5-1) ... 175s Setting up r-cran-mgcv (1.9-1-1) ... 175s Setting up r-cran-rcppgsl (0.3.13-1) ... 175s Setting up r-cran-vctrs (0.6.5-1) ... 175s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 175s Setting up r-cran-munsell (0.5.0-2build1) ... 175s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 175s Setting up r-cran-scales (1.3.0-1) ... 175s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 175s Setting up mapdamage (2.2.1+dfsg-3) ... 175s Setting up autopkgtest-satdep (0) ... 175s Processing triggers for man-db (2.12.0-3) ... 176s Processing triggers for install-info (7.1-3) ... 176s Processing triggers for libc-bin (2.39-0ubuntu2) ... 184s (Reading database ... 83763 files and directories currently installed.) 184s Removing autopkgtest-satdep (0) ... 185s autopkgtest [17:20:09]: test run-unit-test: [----------------------- 188s Started with the command: /usr/bin/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats 188s Error in (yaxis.at == 2) && (yaxis.at == ylabels.at) : 188s 'length = 2' in coercion to 'logical(1)' 188s Calls: plot.base.composition -> plot.axis 188s 3: (function (e) 188s { 188s traceback(2) 188s quit(status = 1) 188s })() 188s 2: plot.axis(2) 188s 1: plot.base.composition(com, "A", "blue", OPT.AROUND, xlabels = FALSE, 188s ylabels.at = c(2, 4)) 189s additional tests/results/Length_plot.pdf generated 189s Successful run 189s Reading from 'tests/test.bam' 189s Writing results to 'tests/results/' 189s Error: plotting with R failed 189s Error: Required table has not been created ('5pCtoT_freq.txt'), bayesian computation cannot be performed 189s .. 189s ---------------------------------------------------------------------- 189s Ran 2 tests in 3.721s 189s 189s OK 190s autopkgtest [17:20:14]: test run-unit-test: -----------------------] 190s autopkgtest [17:20:14]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 190s run-unit-test PASS 190s autopkgtest [17:20:14]: test run-r-packages-check: preparing testbed 303s autopkgtest [17:22:07]: testbed dpkg architecture: arm64 303s autopkgtest [17:22:07]: testbed apt version: 2.7.12 303s autopkgtest [17:22:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 304s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 304s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 304s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 304s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 304s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 304s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 304s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 304s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 304s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 304s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 304s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 304s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 304s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 306s Fetched 9063 kB in 2s (5197 kB/s) 306s Reading package lists... 309s Reading package lists... 309s Building dependency tree... 309s Reading state information... 310s Calculating upgrade... 310s The following packages will be REMOVED: 310s libglib2.0-0 libssl3 310s The following NEW packages will be installed: 310s libglib2.0-0t64 libssl3t64 xdg-user-dirs 310s The following packages have been kept back: 310s curl 310s The following packages will be upgraded: 310s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 310s ubuntu-minimal ubuntu-standard 311s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 311s Need to get 4613 kB of archives. 311s After this operation, 211 kB of additional disk space will be used. 311s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 311s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 311s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 311s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 311s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 311s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 311s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 311s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 311s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 311s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 312s Fetched 4613 kB in 1s (6669 kB/s) 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 312s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 312s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 312s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 312s udisks2 depends on libglib2.0-0 (>= 2.77.0). 312s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 312s python3-gi depends on libglib2.0-0 (>= 2.77.0). 312s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 312s netplan.io depends on libglib2.0-0 (>= 2.70.0). 312s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 312s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 312s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 312s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 312s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 312s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 312s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 312s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 312s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 312s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 312s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 312s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 312s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 312s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 312s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 312s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 312s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 312s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 312s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 312s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 312s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 312s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 312s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 312s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 312s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 312s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 312s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 312s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 312s fwupd depends on libglib2.0-0 (>= 2.79.0). 312s bolt depends on libglib2.0-0 (>= 2.56.0). 312s 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 312s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 312s Selecting previously unselected package libglib2.0-0t64:arm64. 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 312s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 312s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 312s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 312s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 313s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 313s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 313s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 313s wget depends on libssl3 (>= 3.0.0). 313s u-boot-tools depends on libssl3 (>= 3.0.0). 313s tnftp depends on libssl3 (>= 3.0.0). 313s tcpdump depends on libssl3 (>= 3.0.0). 313s systemd-resolved depends on libssl3 (>= 3.0.0). 313s systemd depends on libssl3 (>= 3.0.0). 313s sudo depends on libssl3 (>= 3.0.0). 313s sbsigntool depends on libssl3 (>= 3.0.0). 313s rsync depends on libssl3 (>= 3.0.0). 313s python3-cryptography depends on libssl3 (>= 3.0.0). 313s openssh-server depends on libssl3 (>= 3.0.10). 313s openssh-client depends on libssl3 (>= 3.0.10). 313s mtd-utils depends on libssl3 (>= 3.0.0). 313s mokutil depends on libssl3 (>= 3.0.0). 313s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 313s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 313s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 313s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 313s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 313s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 313s libnvme1 depends on libssl3 (>= 3.0.0). 313s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 313s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 313s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 313s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 313s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 313s kmod depends on libssl3 (>= 3.0.0). 313s dhcpcd-base depends on libssl3 (>= 3.0.0). 313s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 313s 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 313s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 313s Selecting previously unselected package libssl3t64:arm64. 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 313s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 313s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 313s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 313s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 313s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 313s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 313s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 313s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 313s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 313s Unpacking ubuntu-minimal (1.536) over (1.535) ... 313s Selecting previously unselected package xdg-user-dirs. 313s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 313s Unpacking xdg-user-dirs (0.18-1) ... 313s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 313s Unpacking ubuntu-standard (1.536) over (1.535) ... 313s Setting up ubuntu-minimal (1.536) ... 313s Setting up xdg-user-dirs (0.18-1) ... 313s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 313s Setting up libtirpc-common (1.3.4+ds-1.1) ... 313s Setting up ubuntu-standard (1.536) ... 313s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 313s No schema files found: doing nothing. 313s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 313s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 313s Setting up openssl (3.0.13-0ubuntu1) ... 313s Setting up readline-common (8.2-3.1) ... 313s Processing triggers for man-db (2.12.0-3) ... 314s Processing triggers for install-info (7.1-3) ... 314s Processing triggers for libc-bin (2.39-0ubuntu2) ... 314s Reading package lists... 315s Building dependency tree... 315s Reading state information... 315s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 316s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 316s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 316s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 316s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 317s Reading package lists... 318s Reading package lists... 318s Building dependency tree... 318s Reading state information... 318s Calculating upgrade... 319s The following packages have been kept back: 319s curl 319s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 320s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 323s Reading package lists... 324s Building dependency tree... 324s Reading state information... 324s Starting pkgProblemResolver with broken count: 0 324s Starting 2 pkgProblemResolver with broken count: 0 324s Done 325s The following additional packages will be installed: 325s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 325s libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 325s libgfortran5 libgomp1 libgraphite2-3 libgsl-dev libgsl27 libgslcblas0 325s libharfbuzz0b libhts3 libhtscodecs2 libice6 libjbig0 libjpeg-turbo8 libjpeg8 325s liblapack3 liblerc4 libopenblas-dev libopenblas-pthread-dev libopenblas0 325s libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 325s libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpsl5t64 325s libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 325s libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 325s libxrender1 libxss1 libxt6t64 littler mapdamage python3-pysam r-base-core 325s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver 325s r-cran-foreach r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable 325s r-cran-inline r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 325s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 325s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 325s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 325s r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs 325s r-cran-viridislite r-cran-withr seqtk unzip x11-common xdg-utils zip 325s Suggested packages: 325s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html tcl8.6 tk8.6 325s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-kernsmooth 325s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs 325s r-cran-dplyr r-cran-png r-cran-jpeg r-cran-knitr r-cran-rmarkdown 325s r-cran-viridis r-cran-covr r-cran-magick r-cran-sf r-cran-getopt 325s r-cran-bit64 r-cran-dbi r-cran-formattable r-cran-nanotime 325s r-cran-palmerpenguins r-cran-stringi r-cran-survival r-cran-units 325s r-cran-vdiffr r-cran-testthat r-cran-bench r-cran-blob r-cran-brio 325s r-cran-callr r-cran-crayon r-cran-evaluate r-cran-here r-cran-hms 325s r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr 325s Recommended packages: 325s r-recommended r-base-dev r-doc-html r-cran-callr r-cran-covr r-cran-crayon 325s r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-knitr 325s r-cran-mockery r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 325s r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-unitizer 325s r-cran-interp r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj 325s r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg 325s r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-dbi 325s r-cran-rsqlite r-cran-waldo r-cran-lintr r-cran-tidyverse r-cran-lubridate 325s r-cran-fs r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms 325s r-cran-stringi r-cran-data.table r-cran-mockr r-cran-formattable 325s r-cran-generics r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl 325s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 325s The following packages will be REMOVED: 325s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 325s The following NEW packages will be installed: 325s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 325s fonts-dejavu-mono libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 325s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libgsl-dev libgsl27 325s libgslcblas0 libharfbuzz0b libhts3 libhtscodecs2 libice6 libjbig0 325s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libopenblas-dev 325s libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpango-1.0-0 325s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 325s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 325s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 325s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler mapdamage 325s python3-pysam r-base-core r-cran-cli r-cran-codetools r-cran-colorspace 325s r-cran-fansi r-cran-farver r-cran-foreach r-cran-gam r-cran-ggplot2 325s r-cran-glue r-cran-gtable r-cran-inline r-cran-isoband r-cran-iterators 325s r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler 325s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell 325s r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-r6 325s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl r-cran-rlang r-cran-scales 325s r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr seqtk 325s unzip x11-common xdg-utils zip 325s The following packages will be upgraded: 325s curl 325s 1 upgraded, 100 newly installed, 5 to remove and 0 not upgraded. 325s Need to get 85.9 MB/85.9 MB of archives. 325s After this operation, 241 MB of additional disk space will be used. 325s Get:1 /tmp/autopkgtest.9a0gDn/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 325s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 325s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 326s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 326s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 326s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 326s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 326s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 326s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 326s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 326s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 326s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 326s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 326s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 326s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 326s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 326s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 326s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 326s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 326s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 326s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 326s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 326s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 326s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 libgslcblas0 arm64 2.7.1+dfsg-6ubuntu1 [72.5 kB] 326s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl27 arm64 2.7.1+dfsg-6ubuntu1 [912 kB] 326s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl-dev arm64 2.7.1+dfsg-6ubuntu1 [1185 kB] 327s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 327s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 327s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 327s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 327s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 327s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 327s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 327s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0-pthread arm64 0.3.26+ds-1 [5464 kB] 327s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 327s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 327s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas0 arm64 0.3.26+ds-1 [6170 B] 327s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-pthread-dev arm64 0.3.26+ds-1 [3790 kB] 328s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenblas-dev arm64 0.3.26+ds-1 [19.6 kB] 328s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 328s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 328s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 328s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 328s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 328s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 328s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 328s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 328s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 328s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 328s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 328s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 328s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 328s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 328s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 328s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 328s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 328s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 328s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 328s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 328s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 329s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 329s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 329s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 329s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 329s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 329s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gam arm64 1.22-3-1 [407 kB] 329s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 329s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 329s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 329s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 329s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 329s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 329s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 329s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 329s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 329s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 329s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 329s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 330s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 330s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 330s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 330s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 330s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 330s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 330s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 330s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 330s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 330s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 330s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 330s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 330s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 330s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 330s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 330s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 330s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-inline all 0.3.19-2 [129 kB] 330s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 seqtk arm64 1.4-2 [34.5 kB] 330s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB] 330s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 330s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 330s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppgsl arm64 0.3.13-1 [198 kB] 330s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 mapdamage all 2.2.1+dfsg-3 [43.1 kB] 331s Preconfiguring packages ... 332s Fetched 85.9 MB in 5s (16.7 MB/s) 332s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 332s wget depends on libpsl5 (>= 0.16.0). 332s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 332s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 332s 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 332s Removing libpsl5:arm64 (0.21.2-1build1) ... 332s Selecting previously unselected package libpsl5t64:arm64. 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 332s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 332s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 332s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 332s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 332s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 332s Selecting previously unselected package libcurl4t64:arm64. 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 332s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 332s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 332s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 332s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 332s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 332s 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 332s Removing libpng16-16:arm64 (1.6.43-1) ... 332s Selecting previously unselected package libpng16-16t64:arm64. 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 332s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 332s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 333s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 333s parted depends on libreadline8 (>= 6.0). 333s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 333s gpgsm depends on libreadline8 (>= 6.0). 333s gpgconf depends on libreadline8 (>= 6.0). 333s gpg depends on libreadline8 (>= 6.0). 333s gawk depends on libreadline8 (>= 6.0). 333s fdisk depends on libreadline8 (>= 6.0). 333s 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 333s Removing libreadline8:arm64 (8.2-3) ... 333s Selecting previously unselected package libreadline8t64:arm64. 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 333s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 333s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 333s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 333s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 333s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 333s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 333s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 333s lsof depends on libtirpc3 (>= 1.0.2). 333s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 333s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 333s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 333s iproute2 depends on libtirpc3 (>= 1.0.2). 333s 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 333s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 333s Selecting previously unselected package libtirpc3t64:arm64. 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 333s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 333s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 333s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 333s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 333s Selecting previously unselected package fonts-dejavu-mono. 333s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 333s Unpacking fonts-dejavu-mono (2.37-8) ... 333s Selecting previously unselected package fonts-dejavu-core. 333s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 333s Unpacking fonts-dejavu-core (2.37-8) ... 333s Selecting previously unselected package fontconfig-config. 333s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 334s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 334s Selecting previously unselected package libfontconfig1:arm64. 334s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 334s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 334s Selecting previously unselected package fontconfig. 334s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 334s Unpacking fontconfig (2.15.0-1ubuntu1) ... 334s Selecting previously unselected package libblas3:arm64. 334s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 334s Unpacking libblas3:arm64 (3.12.0-3) ... 334s Selecting previously unselected package libpixman-1-0:arm64. 334s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_arm64.deb ... 334s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 334s Selecting previously unselected package libxcb-render0:arm64. 334s Preparing to unpack .../08-libxcb-render0_1.15-1_arm64.deb ... 334s Unpacking libxcb-render0:arm64 (1.15-1) ... 334s Selecting previously unselected package libxcb-shm0:arm64. 335s Preparing to unpack .../09-libxcb-shm0_1.15-1_arm64.deb ... 335s Unpacking libxcb-shm0:arm64 (1.15-1) ... 335s Selecting previously unselected package libxrender1:arm64. 335s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 335s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 335s Selecting previously unselected package libcairo2:arm64. 335s Preparing to unpack .../11-libcairo2_1.18.0-1_arm64.deb ... 335s Unpacking libcairo2:arm64 (1.18.0-1) ... 335s Selecting previously unselected package libdatrie1:arm64. 335s Preparing to unpack .../12-libdatrie1_0.2.13-3_arm64.deb ... 335s Unpacking libdatrie1:arm64 (0.2.13-3) ... 335s Selecting previously unselected package libdeflate0:arm64. 335s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 335s Unpacking libdeflate0:arm64 (1.19-1) ... 335s Selecting previously unselected package libgfortran5:arm64. 335s Preparing to unpack .../14-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 335s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 335s Selecting previously unselected package libgomp1:arm64. 335s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 335s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 335s Selecting previously unselected package libgraphite2-3:arm64. 335s Preparing to unpack .../16-libgraphite2-3_1.3.14-2_arm64.deb ... 335s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 335s Selecting previously unselected package libgslcblas0:arm64. 335s Preparing to unpack .../17-libgslcblas0_2.7.1+dfsg-6ubuntu1_arm64.deb ... 335s Unpacking libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 335s Selecting previously unselected package libgsl27:arm64. 335s Preparing to unpack .../18-libgsl27_2.7.1+dfsg-6ubuntu1_arm64.deb ... 335s Unpacking libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 336s Selecting previously unselected package libgsl-dev. 336s Preparing to unpack .../19-libgsl-dev_2.7.1+dfsg-6ubuntu1_arm64.deb ... 336s Unpacking libgsl-dev (2.7.1+dfsg-6ubuntu1) ... 336s Selecting previously unselected package libharfbuzz0b:arm64. 336s Preparing to unpack .../20-libharfbuzz0b_8.3.0-2_arm64.deb ... 336s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 336s Selecting previously unselected package libhtscodecs2:arm64. 336s Preparing to unpack .../21-libhtscodecs2_1.6.0-1_arm64.deb ... 336s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 336s Selecting previously unselected package libhts3:arm64. 337s Preparing to unpack .../22-libhts3_1.18+ds-1_arm64.deb ... 337s Unpacking libhts3:arm64 (1.18+ds-1) ... 337s Selecting previously unselected package x11-common. 337s Preparing to unpack .../23-x11-common_1%3a7.7+23ubuntu2_all.deb ... 337s Unpacking x11-common (1:7.7+23ubuntu2) ... 337s Selecting previously unselected package libice6:arm64. 337s Preparing to unpack .../24-libice6_2%3a1.0.10-1build2_arm64.deb ... 337s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 337s Selecting previously unselected package libjpeg-turbo8:arm64. 337s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 337s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 337s Selecting previously unselected package libjpeg8:arm64. 337s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_arm64.deb ... 337s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 337s Selecting previously unselected package libopenblas0-pthread:arm64. 338s Preparing to unpack .../27-libopenblas0-pthread_0.3.26+ds-1_arm64.deb ... 338s Unpacking libopenblas0-pthread:arm64 (0.3.26+ds-1) ... 338s Selecting previously unselected package liblapack3:arm64. 338s Preparing to unpack .../28-liblapack3_3.12.0-3_arm64.deb ... 338s Unpacking liblapack3:arm64 (3.12.0-3) ... 338s Selecting previously unselected package liblerc4:arm64. 338s Preparing to unpack .../29-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 338s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 338s Selecting previously unselected package libopenblas0:arm64. 338s Preparing to unpack .../30-libopenblas0_0.3.26+ds-1_arm64.deb ... 338s Unpacking libopenblas0:arm64 (0.3.26+ds-1) ... 338s Selecting previously unselected package libopenblas-pthread-dev:arm64. 338s Preparing to unpack .../31-libopenblas-pthread-dev_0.3.26+ds-1_arm64.deb ... 338s Unpacking libopenblas-pthread-dev:arm64 (0.3.26+ds-1) ... 338s Selecting previously unselected package libopenblas-dev:arm64. 338s Preparing to unpack .../32-libopenblas-dev_0.3.26+ds-1_arm64.deb ... 338s Unpacking libopenblas-dev:arm64 (0.3.26+ds-1) ... 338s Selecting previously unselected package libthai-data. 338s Preparing to unpack .../33-libthai-data_0.1.29-2_all.deb ... 338s Unpacking libthai-data (0.1.29-2) ... 339s Selecting previously unselected package libthai0:arm64. 339s Preparing to unpack .../34-libthai0_0.1.29-2_arm64.deb ... 339s Unpacking libthai0:arm64 (0.1.29-2) ... 339s Selecting previously unselected package libpango-1.0-0:arm64. 339s Preparing to unpack .../35-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 339s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 339s Selecting previously unselected package libpangoft2-1.0-0:arm64. 339s Preparing to unpack .../36-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 339s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 339s Selecting previously unselected package libpangocairo-1.0-0:arm64. 339s Preparing to unpack .../37-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 339s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 339s Selecting previously unselected package libpaper1:arm64. 339s Preparing to unpack .../38-libpaper1_1.1.29_arm64.deb ... 339s Unpacking libpaper1:arm64 (1.1.29) ... 339s Selecting previously unselected package libpaper-utils. 339s Preparing to unpack .../39-libpaper-utils_1.1.29_arm64.deb ... 339s Unpacking libpaper-utils (1.1.29) ... 339s Selecting previously unselected package libsharpyuv0:arm64. 339s Preparing to unpack .../40-libsharpyuv0_1.3.2-0.4_arm64.deb ... 339s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 339s Selecting previously unselected package libsm6:arm64. 339s Preparing to unpack .../41-libsm6_2%3a1.2.3-1build2_arm64.deb ... 339s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 339s Selecting previously unselected package libtcl8.6:arm64. 339s Preparing to unpack .../42-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 339s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 339s Selecting previously unselected package libjbig0:arm64. 339s Preparing to unpack .../43-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 339s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 339s Selecting previously unselected package libwebp7:arm64. 339s Preparing to unpack .../44-libwebp7_1.3.2-0.4_arm64.deb ... 339s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 339s Selecting previously unselected package libtiff6:arm64. 339s Preparing to unpack .../45-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 339s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 339s Selecting previously unselected package libxft2:arm64. 339s Preparing to unpack .../46-libxft2_2.3.6-1_arm64.deb ... 339s Unpacking libxft2:arm64 (2.3.6-1) ... 339s Selecting previously unselected package libxss1:arm64. 339s Preparing to unpack .../47-libxss1_1%3a1.2.3-1build2_arm64.deb ... 339s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 339s Selecting previously unselected package libtk8.6:arm64. 339s Preparing to unpack .../48-libtk8.6_8.6.13-2_arm64.deb ... 339s Unpacking libtk8.6:arm64 (8.6.13-2) ... 339s Selecting previously unselected package libxt6t64:arm64. 339s Preparing to unpack .../49-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 339s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 339s Selecting previously unselected package zip. 339s Preparing to unpack .../50-zip_3.0-13_arm64.deb ... 339s Unpacking zip (3.0-13) ... 339s Selecting previously unselected package unzip. 339s Preparing to unpack .../51-unzip_6.0-28ubuntu3_arm64.deb ... 339s Unpacking unzip (6.0-28ubuntu3) ... 339s Selecting previously unselected package xdg-utils. 339s Preparing to unpack .../52-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 339s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 339s Selecting previously unselected package r-base-core. 339s Preparing to unpack .../53-r-base-core_4.3.3-2build1_arm64.deb ... 339s Unpacking r-base-core (4.3.3-2build1) ... 340s Selecting previously unselected package r-cran-littler. 340s Preparing to unpack .../54-r-cran-littler_0.3.19-1_arm64.deb ... 340s Unpacking r-cran-littler (0.3.19-1) ... 340s Selecting previously unselected package littler. 340s Preparing to unpack .../55-littler_0.3.19-1_all.deb ... 340s Unpacking littler (0.3.19-1) ... 340s Selecting previously unselected package r-cran-codetools. 340s Preparing to unpack .../56-r-cran-codetools_0.2-19-1_all.deb ... 340s Unpacking r-cran-codetools (0.2-19-1) ... 340s Selecting previously unselected package r-cran-iterators. 340s Preparing to unpack .../57-r-cran-iterators_1.0.14-1_all.deb ... 340s Unpacking r-cran-iterators (1.0.14-1) ... 340s Selecting previously unselected package r-cran-foreach. 340s Preparing to unpack .../58-r-cran-foreach_1.5.2-1_all.deb ... 340s Unpacking r-cran-foreach (1.5.2-1) ... 340s Selecting previously unselected package r-cran-gam. 340s Preparing to unpack .../59-r-cran-gam_1.22-3-1_arm64.deb ... 340s Unpacking r-cran-gam (1.22-3-1) ... 340s Selecting previously unselected package r-cran-cli. 340s Preparing to unpack .../60-r-cran-cli_3.6.2-1_arm64.deb ... 340s Unpacking r-cran-cli (3.6.2-1) ... 340s Selecting previously unselected package r-cran-glue. 340s Preparing to unpack .../61-r-cran-glue_1.7.0-1_arm64.deb ... 340s Unpacking r-cran-glue (1.7.0-1) ... 340s Selecting previously unselected package r-cran-rlang. 340s Preparing to unpack .../62-r-cran-rlang_1.1.3-1_arm64.deb ... 340s Unpacking r-cran-rlang (1.1.3-1) ... 340s Selecting previously unselected package r-cran-lifecycle. 340s Preparing to unpack .../63-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 340s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 340s Selecting previously unselected package r-cran-gtable. 340s Preparing to unpack .../64-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 340s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 340s Selecting previously unselected package r-cran-isoband. 341s Preparing to unpack .../65-r-cran-isoband_0.2.7-1_arm64.deb ... 341s Unpacking r-cran-isoband (0.2.7-1) ... 341s Selecting previously unselected package r-cran-mass. 341s Preparing to unpack .../66-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 341s Unpacking r-cran-mass (7.3-60.0.1-1) ... 341s Selecting previously unselected package r-cran-lattice. 341s Preparing to unpack .../67-r-cran-lattice_0.22-5-1_arm64.deb ... 341s Unpacking r-cran-lattice (0.22-5-1) ... 341s Selecting previously unselected package r-cran-nlme. 341s Preparing to unpack .../68-r-cran-nlme_3.1.164-1_arm64.deb ... 341s Unpacking r-cran-nlme (3.1.164-1) ... 341s Selecting previously unselected package r-cran-matrix. 341s Preparing to unpack .../69-r-cran-matrix_1.6-5-1_arm64.deb ... 341s Unpacking r-cran-matrix (1.6-5-1) ... 341s Selecting previously unselected package r-cran-mgcv. 341s Preparing to unpack .../70-r-cran-mgcv_1.9-1-1_arm64.deb ... 341s Unpacking r-cran-mgcv (1.9-1-1) ... 341s Selecting previously unselected package r-cran-farver. 341s Preparing to unpack .../71-r-cran-farver_2.1.1-1_arm64.deb ... 341s Unpacking r-cran-farver (2.1.1-1) ... 341s Selecting previously unselected package r-cran-labeling. 341s Preparing to unpack .../72-r-cran-labeling_0.4.3-1_all.deb ... 341s Unpacking r-cran-labeling (0.4.3-1) ... 341s Selecting previously unselected package r-cran-colorspace. 341s Preparing to unpack .../73-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 341s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 341s Selecting previously unselected package r-cran-munsell. 341s Preparing to unpack .../74-r-cran-munsell_0.5.0-2build1_all.deb ... 341s Unpacking r-cran-munsell (0.5.0-2build1) ... 341s Selecting previously unselected package r-cran-r6. 341s Preparing to unpack .../75-r-cran-r6_2.5.1-1_all.deb ... 341s Unpacking r-cran-r6 (2.5.1-1) ... 341s Selecting previously unselected package r-cran-rcolorbrewer. 341s Preparing to unpack .../76-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 341s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 342s Selecting previously unselected package r-cran-viridislite. 342s Preparing to unpack .../77-r-cran-viridislite_0.4.2-2_all.deb ... 342s Unpacking r-cran-viridislite (0.4.2-2) ... 342s Selecting previously unselected package r-cran-scales. 342s Preparing to unpack .../78-r-cran-scales_1.3.0-1_all.deb ... 342s Unpacking r-cran-scales (1.3.0-1) ... 342s Selecting previously unselected package r-cran-fansi. 342s Preparing to unpack .../79-r-cran-fansi_1.0.5-1_arm64.deb ... 342s Unpacking r-cran-fansi (1.0.5-1) ... 342s Selecting previously unselected package r-cran-magrittr. 342s Preparing to unpack .../80-r-cran-magrittr_2.0.3-1_arm64.deb ... 342s Unpacking r-cran-magrittr (2.0.3-1) ... 342s Selecting previously unselected package r-cran-utf8. 342s Preparing to unpack .../81-r-cran-utf8_1.2.4-1_arm64.deb ... 342s Unpacking r-cran-utf8 (1.2.4-1) ... 343s Selecting previously unselected package r-cran-vctrs. 343s Preparing to unpack .../82-r-cran-vctrs_0.6.5-1_arm64.deb ... 343s Unpacking r-cran-vctrs (0.6.5-1) ... 343s Selecting previously unselected package r-cran-pillar. 343s Preparing to unpack .../83-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 343s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 343s Selecting previously unselected package r-cran-pkgconfig. 343s Preparing to unpack .../84-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 343s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 343s Selecting previously unselected package r-cran-tibble. 343s Preparing to unpack .../85-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 343s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 343s Selecting previously unselected package r-cran-withr. 343s Preparing to unpack .../86-r-cran-withr_2.5.0-1_all.deb ... 343s Unpacking r-cran-withr (2.5.0-1) ... 343s Selecting previously unselected package r-cran-ggplot2. 343s Preparing to unpack .../87-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 343s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 343s Selecting previously unselected package r-cran-inline. 343s Preparing to unpack .../88-r-cran-inline_0.3.19-2_all.deb ... 343s Unpacking r-cran-inline (0.3.19-2) ... 343s Selecting previously unselected package seqtk. 343s Preparing to unpack .../89-seqtk_1.4-2_arm64.deb ... 343s Unpacking seqtk (1.4-2) ... 343s Selecting previously unselected package python3-pysam. 344s Preparing to unpack .../90-python3-pysam_0.22.0+ds-1_arm64.deb ... 344s Unpacking python3-pysam (0.22.0+ds-1) ... 344s Selecting previously unselected package r-cran-pkgkitten. 344s Preparing to unpack .../91-r-cran-pkgkitten_0.2.3-1_all.deb ... 344s Unpacking r-cran-pkgkitten (0.2.3-1) ... 344s Selecting previously unselected package r-cran-rcpp. 344s Preparing to unpack .../92-r-cran-rcpp_1.0.12-1_arm64.deb ... 344s Unpacking r-cran-rcpp (1.0.12-1) ... 344s Selecting previously unselected package r-cran-rcppgsl. 344s Preparing to unpack .../93-r-cran-rcppgsl_0.3.13-1_arm64.deb ... 344s Unpacking r-cran-rcppgsl (0.3.13-1) ... 344s Selecting previously unselected package mapdamage. 344s Preparing to unpack .../94-mapdamage_2.2.1+dfsg-3_all.deb ... 344s Unpacking mapdamage (2.2.1+dfsg-3) ... 344s Selecting previously unselected package autopkgtest-satdep. 345s Preparing to unpack .../95-2-autopkgtest-satdep.deb ... 345s Unpacking autopkgtest-satdep (0) ... 345s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 345s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 345s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 345s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 345s Setting up libpaper1:arm64 (1.1.29) ... 346s 346s Creating config file /etc/papersize with new version 346s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 346s Setting up seqtk (1.4-2) ... 346s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 346s Setting up libdatrie1:arm64 (0.2.13-3) ... 346s Setting up libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 346s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 346s Setting up libxcb-render0:arm64 (1.15-1) ... 346s Setting up unzip (6.0-28ubuntu3) ... 346s Setting up x11-common (1:7.7+23ubuntu2) ... 346s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 346s Setting up libdeflate0:arm64 (1.19-1) ... 346s Setting up libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 347s Setting up libxcb-shm0:arm64 (1.15-1) ... 347s Setting up libpaper-utils (1.1.29) ... 347s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 347s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 347s Setting up zip (3.0-13) ... 347s Setting up libblas3:arm64 (3.12.0-3) ... 347s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 347s Setting up fonts-dejavu-mono (2.37-8) ... 347s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 347s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 347s Setting up fonts-dejavu-core (2.37-8) ... 347s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 347s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 347s Setting up libwebp7:arm64 (1.3.2-0.4) ... 347s Setting up libreadline8t64:arm64 (8.2-3.1) ... 347s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 347s Setting up libthai-data (0.1.29-2) ... 347s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 347s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 347s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 347s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 347s Setting up libice6:arm64 (2:1.0.10-1build2) ... 347s Setting up liblapack3:arm64 (3.12.0-3) ... 347s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 347s Setting up libhts3:arm64 (1.18+ds-1) ... 347s Setting up libgsl-dev (2.7.1+dfsg-6ubuntu1) ... 347s Setting up libopenblas0-pthread:arm64 (0.3.26+ds-1) ... 347s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 347s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 347s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode 347s Setting up python3-pysam (0.22.0+ds-1) ... 347s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 347s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 347s Setting up libthai0:arm64 (0.1.29-2) ... 347s Setting up libopenblas0:arm64 (0.3.26+ds-1) ... 347s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 347s Setting up curl (8.5.0-2ubuntu7) ... 347s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 347s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 347s Setting up libopenblas-pthread-dev:arm64 (0.3.26+ds-1) ... 347s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 347s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 347s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode 347s Setting up fontconfig (2.15.0-1ubuntu1) ... 349s Regenerating fonts cache... done. 349s Setting up libxft2:arm64 (2.3.6-1) ... 349s Setting up libtk8.6:arm64 (8.6.13-2) ... 349s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 349s Setting up libcairo2:arm64 (1.18.0-1) ... 349s Setting up libopenblas-dev:arm64 (0.3.26+ds-1) ... 349s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 349s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 349s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 349s Setting up r-base-core (4.3.3-2build1) ... 350s 350s Creating config file /etc/R/Renviron with new version 350s Setting up r-cran-labeling (0.4.3-1) ... 350s Setting up r-cran-lattice (0.22-5-1) ... 350s Setting up r-cran-nlme (3.1.164-1) ... 350s Setting up r-cran-farver (2.1.1-1) ... 350s Setting up r-cran-viridislite (0.4.2-2) ... 350s Setting up r-cran-r6 (2.5.1-1) ... 350s Setting up r-cran-pkgkitten (0.2.3-1) ... 350s Setting up r-cran-magrittr (2.0.3-1) ... 350s Setting up r-cran-littler (0.3.19-1) ... 350s Setting up r-cran-rcpp (1.0.12-1) ... 350s Setting up r-cran-codetools (0.2-19-1) ... 350s Setting up r-cran-inline (0.3.19-2) ... 350s Setting up r-cran-rlang (1.1.3-1) ... 350s Setting up littler (0.3.19-1) ... 350s Setting up r-cran-withr (2.5.0-1) ... 350s Setting up r-cran-iterators (1.0.14-1) ... 350s Setting up r-cran-foreach (1.5.2-1) ... 350s Setting up r-cran-fansi (1.0.5-1) ... 350s Setting up r-cran-mass (7.3-60.0.1-1) ... 350s Setting up r-cran-glue (1.7.0-1) ... 350s Setting up r-cran-gam (1.22-3-1) ... 350s Setting up r-cran-cli (3.6.2-1) ... 350s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 350s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 350s Setting up r-cran-utf8 (1.2.4-1) ... 350s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 350s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 350s Setting up r-cran-isoband (0.2.7-1) ... 350s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 350s Setting up r-cran-matrix (1.6-5-1) ... 350s Setting up r-cran-mgcv (1.9-1-1) ... 350s Setting up r-cran-rcppgsl (0.3.13-1) ... 350s Setting up r-cran-vctrs (0.6.5-1) ... 350s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 350s Setting up r-cran-munsell (0.5.0-2build1) ... 350s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 350s Setting up r-cran-scales (1.3.0-1) ... 350s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 350s Setting up mapdamage (2.2.1+dfsg-3) ... 350s Setting up autopkgtest-satdep (0) ... 350s Processing triggers for man-db (2.12.0-3) ... 350s Processing triggers for install-info (7.1-3) ... 351s Processing triggers for libc-bin (2.39-0ubuntu2) ... 358s (Reading database ... 81736 files and directories currently installed.) 358s Removing autopkgtest-satdep (0) ... 359s autopkgtest [17:23:03]: test run-r-packages-check: [----------------------- 365s All R packages are present 370s autopkgtest [17:23:14]: test run-r-packages-check: -----------------------] 372s autopkgtest [17:23:16]: test run-r-packages-check: - - - - - - - - - - results - - - - - - - - - - 372s run-r-packages-check PASS 373s autopkgtest [17:23:17]: @@@@@@@@@@@@@@@@@@@@ summary 373s run-unit-test PASS 373s run-r-packages-check PASS 384s Creating nova instance adt-noble-arm64-mapdamage-20240316-171703-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)... 384s Creating nova instance adt-noble-arm64-mapdamage-20240316-171703-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...