0s autopkgtest [17:16:47]: starting date and time: 2024-03-16 17:16:47+0000 0s autopkgtest [17:16:47]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:16:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kxsyfa25/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade libvcflib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-7.secgroup --name adt-noble-arm64-libvcflib-20240316-171647-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 143s autopkgtest [17:19:10]: testbed dpkg architecture: arm64 144s autopkgtest [17:19:11]: testbed apt version: 2.7.12 144s autopkgtest [17:19:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 145s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 146s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 146s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 146s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 146s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 146s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 146s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 146s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 146s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 147s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 147s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 147s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 147s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 156s Fetched 9063 kB in 5s (1985 kB/s) 157s Reading package lists... 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 165s Calculating upgrade... 166s The following packages will be REMOVED: 166s libglib2.0-0 libssl3 166s The following NEW packages will be installed: 166s libglib2.0-0t64 libssl3t64 xdg-user-dirs 166s The following packages have been kept back: 166s curl 166s The following packages will be upgraded: 166s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 166s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 166s Need to get 4592 kB of archives. 166s After this operation, 211 kB of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 166s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 167s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 167s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 167s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 167s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 167s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 167s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 168s Fetched 4592 kB in 1s (4654 kB/s) 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 168s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 168s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 168s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 168s udisks2 depends on libglib2.0-0 (>= 2.77.0). 168s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 168s python3-gi depends on libglib2.0-0 (>= 2.77.0). 168s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 168s netplan.io depends on libglib2.0-0 (>= 2.70.0). 168s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 169s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 169s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 169s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 169s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 169s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 169s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 169s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 169s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 169s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 169s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 169s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 169s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 169s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 169s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 169s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 169s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 169s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 169s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 169s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 169s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 169s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 169s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 169s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 169s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 169s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 169s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 169s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 169s fwupd depends on libglib2.0-0 (>= 2.79.0). 169s bolt depends on libglib2.0-0 (>= 2.56.0). 169s 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 169s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 169s Selecting previously unselected package libglib2.0-0t64:arm64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 169s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 169s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 169s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 169s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 169s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 169s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 170s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 170s wget depends on libssl3 (>= 3.0.0). 170s u-boot-tools depends on libssl3 (>= 3.0.0). 170s tnftp depends on libssl3 (>= 3.0.0). 170s tcpdump depends on libssl3 (>= 3.0.0). 170s systemd-resolved depends on libssl3 (>= 3.0.0). 170s systemd depends on libssl3 (>= 3.0.0). 170s sudo depends on libssl3 (>= 3.0.0). 170s sbsigntool depends on libssl3 (>= 3.0.0). 170s rsync depends on libssl3 (>= 3.0.0). 170s python3-cryptography depends on libssl3 (>= 3.0.0). 170s openssh-server depends on libssl3 (>= 3.0.10). 170s openssh-client depends on libssl3 (>= 3.0.10). 170s mtd-utils depends on libssl3 (>= 3.0.0). 170s mokutil depends on libssl3 (>= 3.0.0). 170s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 170s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 170s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 170s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 170s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 170s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 170s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 170s libnvme1 depends on libssl3 (>= 3.0.0). 170s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 170s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 170s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 170s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 170s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 170s kmod depends on libssl3 (>= 3.0.0). 170s dhcpcd-base depends on libssl3 (>= 3.0.0). 170s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 170s 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 170s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 170s Selecting previously unselected package libssl3t64:arm64. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 170s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 170s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 170s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 170s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 170s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 170s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 170s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 170s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 170s Selecting previously unselected package xdg-user-dirs. 171s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 171s Unpacking xdg-user-dirs (0.18-1) ... 171s Setting up xdg-user-dirs (0.18-1) ... 171s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 171s Setting up libtirpc-common (1.3.4+ds-1.1) ... 171s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 171s No schema files found: doing nothing. 171s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 171s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 171s Setting up openssl (3.0.13-0ubuntu1) ... 171s Setting up readline-common (8.2-3.1) ... 171s Processing triggers for man-db (2.12.0-3) ... 172s Processing triggers for install-info (7.1-3) ... 172s Processing triggers for libc-bin (2.39-0ubuntu2) ... 173s Reading package lists... 174s Building dependency tree... 174s Reading state information... 175s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 176s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 176s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 176s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 176s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 182s Reading package lists... 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 184s Calculating upgrade... 185s The following packages have been kept back: 185s curl 185s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 185s Reading package lists... 186s Building dependency tree... 186s Reading state information... 188s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 191s autopkgtest [17:19:58]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 191s autopkgtest [17:19:58]: @@@@@@@@@@@@@@@@@@@@ apt-source libvcflib 198s Get:1 http://ftpmaster.internal/ubuntu noble/universe libvcflib 1.0.9+dfsg1-3 (dsc) [2652 B] 198s Get:2 http://ftpmaster.internal/ubuntu noble/universe libvcflib 1.0.9+dfsg1-3 (tar) [9044 kB] 198s Get:3 http://ftpmaster.internal/ubuntu noble/universe libvcflib 1.0.9+dfsg1-3 (diff) [74.3 kB] 198s gpgv: Signature made Sun Dec 3 12:37:29 2023 UTC 198s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 198s gpgv: issuer "tille@debian.org" 198s gpgv: Can't check signature: No public key 198s dpkg-source: warning: cannot verify inline signature for ./libvcflib_1.0.9+dfsg1-3.dsc: no acceptable signature found 201s autopkgtest [17:20:08]: testing package libvcflib version 1.0.9+dfsg1-3 201s autopkgtest [17:20:08]: build not needed 206s autopkgtest [17:20:13]: test command1: preparing testbed 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 210s Starting pkgProblemResolver with broken count: 0 211s Starting 2 pkgProblemResolver with broken count: 0 211s Done 212s The following additional packages will be installed: 212s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 212s libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libdisorder0 212s libfastahack0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 212s libharfbuzz0b libhts3 libhtscodecs2 libice6 libjbig0 libjpeg-turbo8 libjpeg8 212s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 212s libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpsl5t64 212s libreadline8t64 libsharpyuv0 libsm6 libsmithwaterman0 libtabixpp0 libtcl8.6 212s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libvcflib-tools 212s libvcflib2 libwebp7 libwfa2-0 libxcb-render0 libxcb-shm0 libxft2 libxrender1 212s libxss1 libxt6t64 littler r-base-core r-cran-cli r-cran-colorspace 212s r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gridbase 212s r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle 212s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv 212s r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 212s r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang 212s r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite 212s r-cran-withr unzip x11-common xdg-utils zip 212s Suggested packages: 212s tcl8.6 tk8.6 r-cran-pracma elpa-ess r-doc-info | r-doc-pdf r-mathlib 212s r-base-html r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 212s r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-png r-cran-jpeg r-cran-knitr 212s r-cran-rmarkdown r-cran-viridis r-cran-covr r-cran-magick r-cran-sf 212s r-cran-getopt r-cran-bit64 r-cran-dbi r-cran-formattable r-cran-nanotime 212s r-cran-palmerpenguins r-cran-stringi r-cran-survival r-cran-units 212s r-cran-vdiffr r-cran-testthat r-cran-inline r-cran-bench r-cran-blob 212s r-cran-brio r-cran-callr r-cran-crayon r-cran-evaluate r-cran-here 212s r-cran-hms r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-purrr 212s r-cran-tidyr 212s Recommended packages: 212s r-recommended r-base-dev r-doc-html r-cran-callr r-cran-covr r-cran-crayon 212s r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-knitr 212s r-cran-mockery r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 212s r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-unitizer r-cran-dplyr 212s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 212s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 212s r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-dbi r-cran-rsqlite 212s r-cran-waldo r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-abind 212s r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools r-cran-fs 212s r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-stringi 212s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-generics 212s r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl 212s libx11-protocol-perl x11-utils x11-xserver-utils 213s The following packages will be REMOVED: 213s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 213s The following NEW packages will be installed: 213s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 213s fonts-dejavu-mono libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 213s libdisorder0 libfastahack0 libfontconfig1 libgfortran5 libgomp1 213s libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libjbig0 213s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 213s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 213s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 213s libsmithwaterman0 libtabixpp0 libtcl8.6 libthai-data libthai0 libtiff6 213s libtirpc3t64 libtk8.6 libvcflib-tools libvcflib2 libwebp7 libwfa2-0 213s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 213s r-base-core r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver 213s r-cran-ggplot2 r-cran-glue r-cran-gridbase r-cran-gtable r-cran-isoband 213s r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler 213s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell 213s r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr 213s r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-scales 213s r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr unzip 213s x11-common xdg-utils zip 213s The following packages will be upgraded: 213s curl 213s 1 upgraded, 93 newly installed, 5 to remove and 0 not upgraded. 213s Need to get 70.7 MB/70.7 MB of archives. 213s After this operation, 141 MB of additional disk space will be used. 213s Get:1 /tmp/autopkgtest.mCKL6P/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 213s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 213s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 213s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 213s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 213s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 214s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 214s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 214s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 214s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 214s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 214s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 214s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 214s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 214s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 214s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 214s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 214s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 214s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 214s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 214s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4 [4578 B] 214s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastahack0 arm64 1.0.0+dfsg-11 [26.8 kB] 214s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 214s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 214s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 214s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 214s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 214s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 214s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 214s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 214s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 214s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 214s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 214s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 215s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 215s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 215s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 215s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 215s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 215s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 215s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 215s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 215s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 215s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12 [35.9 kB] 215s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 libtabixpp0 arm64 1.1.2-2 [9636 B] 215s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 215s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 215s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 215s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 215s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 215s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 215s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 215s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libwfa2-0 arm64 2.3.3-2 [59.1 kB] 215s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 libvcflib2 arm64 1.0.9+dfsg1-3 [183 kB] 215s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 215s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 215s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 215s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 215s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 216s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 216s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 216s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 216s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 216s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 216s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 216s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 216s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 217s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 217s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 217s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 217s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 217s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 217s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 217s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 217s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 217s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 217s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 217s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 217s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 217s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 217s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 217s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 217s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 217s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 217s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 217s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 217s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 217s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 217s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 217s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 217s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 217s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 218s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridbase all 0.4-7-5build1 [163 kB] 218s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libvcflib-tools arm64 1.0.9+dfsg1-3 [647 kB] 219s Preconfiguring packages ... 219s Fetched 70.7 MB in 5s (14.8 MB/s) 219s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 219s wget depends on libpsl5 (>= 0.16.0). 219s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 219s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 219s 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 220s Removing libpsl5:arm64 (0.21.2-1build1) ... 220s Selecting previously unselected package libpsl5t64:arm64. 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75861 files and directories currently installed.) 220s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 220s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 220s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 220s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 220s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 220s Selecting previously unselected package libcurl4t64:arm64. 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 220s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 220s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 220s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 220s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 220s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 220s 221s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 221s Removing libpng16-16:arm64 (1.6.43-1) ... 221s Selecting previously unselected package libpng16-16t64:arm64. 221s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 221s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 221s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 221s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 221s parted depends on libreadline8 (>= 6.0). 221s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 221s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 221s gpgsm depends on libreadline8 (>= 6.0). 221s gpgconf depends on libreadline8 (>= 6.0). 221s gpg depends on libreadline8 (>= 6.0). 221s gawk depends on libreadline8 (>= 6.0). 221s fdisk depends on libreadline8 (>= 6.0). 221s 221s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 221s Removing libreadline8:arm64 (8.2-3) ... 221s Selecting previously unselected package libreadline8t64:arm64. 221s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75857 files and directories currently installed.) 221s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 221s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 221s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 221s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 221s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 221s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 222s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 222s lsof depends on libtirpc3 (>= 1.0.2). 222s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 222s libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 222s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 222s iproute2 depends on libtirpc3 (>= 1.0.2). 222s 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75877 files and directories currently installed.) 222s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 222s Selecting previously unselected package libtirpc3t64:arm64. 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75871 files and directories currently installed.) 222s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 222s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 222s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 222s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 222s Selecting previously unselected package fonts-dejavu-mono. 222s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 222s Unpacking fonts-dejavu-mono (2.37-8) ... 222s Selecting previously unselected package fonts-dejavu-core. 222s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 222s Unpacking fonts-dejavu-core (2.37-8) ... 223s Selecting previously unselected package fontconfig-config. 223s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 223s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 223s Selecting previously unselected package libfontconfig1:arm64. 223s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 223s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 223s Selecting previously unselected package fontconfig. 223s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 223s Unpacking fontconfig (2.15.0-1ubuntu1) ... 223s Selecting previously unselected package libblas3:arm64. 223s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 224s Unpacking libblas3:arm64 (3.12.0-3) ... 224s Selecting previously unselected package libpixman-1-0:arm64. 224s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_arm64.deb ... 224s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 224s Selecting previously unselected package libxcb-render0:arm64. 224s Preparing to unpack .../08-libxcb-render0_1.15-1_arm64.deb ... 224s Unpacking libxcb-render0:arm64 (1.15-1) ... 224s Selecting previously unselected package libxcb-shm0:arm64. 224s Preparing to unpack .../09-libxcb-shm0_1.15-1_arm64.deb ... 224s Unpacking libxcb-shm0:arm64 (1.15-1) ... 224s Selecting previously unselected package libxrender1:arm64. 224s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 224s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 224s Selecting previously unselected package libcairo2:arm64. 224s Preparing to unpack .../11-libcairo2_1.18.0-1_arm64.deb ... 224s Unpacking libcairo2:arm64 (1.18.0-1) ... 224s Selecting previously unselected package libdatrie1:arm64. 224s Preparing to unpack .../12-libdatrie1_0.2.13-3_arm64.deb ... 224s Unpacking libdatrie1:arm64 (0.2.13-3) ... 224s Selecting previously unselected package libdeflate0:arm64. 224s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 224s Unpacking libdeflate0:arm64 (1.19-1) ... 224s Selecting previously unselected package libdisorder0:arm64. 224s Preparing to unpack .../14-libdisorder0_0.0.2+git20130809.8062ee1-4_arm64.deb ... 224s Unpacking libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4) ... 224s Selecting previously unselected package libfastahack0:arm64. 224s Preparing to unpack .../15-libfastahack0_1.0.0+dfsg-11_arm64.deb ... 224s Unpacking libfastahack0:arm64 (1.0.0+dfsg-11) ... 224s Selecting previously unselected package libgfortran5:arm64. 225s Preparing to unpack .../16-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 225s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libgomp1:arm64. 225s Preparing to unpack .../17-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 225s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libgraphite2-3:arm64. 225s Preparing to unpack .../18-libgraphite2-3_1.3.14-2_arm64.deb ... 225s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 225s Selecting previously unselected package libharfbuzz0b:arm64. 225s Preparing to unpack .../19-libharfbuzz0b_8.3.0-2_arm64.deb ... 225s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 225s Selecting previously unselected package libhtscodecs2:arm64. 225s Preparing to unpack .../20-libhtscodecs2_1.6.0-1_arm64.deb ... 225s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 225s Selecting previously unselected package libhts3:arm64. 225s Preparing to unpack .../21-libhts3_1.18+ds-1_arm64.deb ... 225s Unpacking libhts3:arm64 (1.18+ds-1) ... 225s Selecting previously unselected package x11-common. 225s Preparing to unpack .../22-x11-common_1%3a7.7+23ubuntu2_all.deb ... 225s Unpacking x11-common (1:7.7+23ubuntu2) ... 225s Selecting previously unselected package libice6:arm64. 225s Preparing to unpack .../23-libice6_2%3a1.0.10-1build2_arm64.deb ... 225s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 225s Selecting previously unselected package libjpeg-turbo8:arm64. 225s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 225s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 226s Selecting previously unselected package libjpeg8:arm64. 226s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 226s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 226s Selecting previously unselected package liblapack3:arm64. 226s Preparing to unpack .../26-liblapack3_3.12.0-3_arm64.deb ... 226s Unpacking liblapack3:arm64 (3.12.0-3) ... 226s Selecting previously unselected package liblerc4:arm64. 226s Preparing to unpack .../27-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 226s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 226s Selecting previously unselected package libthai-data. 226s Preparing to unpack .../28-libthai-data_0.1.29-2_all.deb ... 226s Unpacking libthai-data (0.1.29-2) ... 226s Selecting previously unselected package libthai0:arm64. 226s Preparing to unpack .../29-libthai0_0.1.29-2_arm64.deb ... 226s Unpacking libthai0:arm64 (0.1.29-2) ... 226s Selecting previously unselected package libpango-1.0-0:arm64. 226s Preparing to unpack .../30-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 226s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 226s Selecting previously unselected package libpangoft2-1.0-0:arm64. 226s Preparing to unpack .../31-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 226s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 226s Selecting previously unselected package libpangocairo-1.0-0:arm64. 226s Preparing to unpack .../32-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 226s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 226s Selecting previously unselected package libpaper1:arm64. 226s Preparing to unpack .../33-libpaper1_1.1.29_arm64.deb ... 226s Unpacking libpaper1:arm64 (1.1.29) ... 227s Selecting previously unselected package libpaper-utils. 227s Preparing to unpack .../34-libpaper-utils_1.1.29_arm64.deb ... 227s Unpacking libpaper-utils (1.1.29) ... 227s Selecting previously unselected package libsharpyuv0:arm64. 227s Preparing to unpack .../35-libsharpyuv0_1.3.2-0.4_arm64.deb ... 227s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 227s Selecting previously unselected package libsm6:arm64. 227s Preparing to unpack .../36-libsm6_2%3a1.2.3-1build2_arm64.deb ... 227s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 227s Selecting previously unselected package libsmithwaterman0:arm64. 227s Preparing to unpack .../37-libsmithwaterman0_0.0+git20160702.2610e25-12_arm64.deb ... 227s Unpacking libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12) ... 227s Selecting previously unselected package libtabixpp0:arm64. 227s Preparing to unpack .../38-libtabixpp0_1.1.2-2_arm64.deb ... 227s Unpacking libtabixpp0:arm64 (1.1.2-2) ... 227s Selecting previously unselected package libtcl8.6:arm64. 227s Preparing to unpack .../39-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 227s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 227s Selecting previously unselected package libjbig0:arm64. 227s Preparing to unpack .../40-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 227s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 227s Selecting previously unselected package libwebp7:arm64. 227s Preparing to unpack .../41-libwebp7_1.3.2-0.4_arm64.deb ... 227s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 228s Selecting previously unselected package libtiff6:arm64. 228s Preparing to unpack .../42-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 228s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 228s Selecting previously unselected package libxft2:arm64. 228s Preparing to unpack .../43-libxft2_2.3.6-1_arm64.deb ... 228s Unpacking libxft2:arm64 (2.3.6-1) ... 228s Selecting previously unselected package libxss1:arm64. 228s Preparing to unpack .../44-libxss1_1%3a1.2.3-1build2_arm64.deb ... 228s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 228s Selecting previously unselected package libtk8.6:arm64. 228s Preparing to unpack .../45-libtk8.6_8.6.13-2_arm64.deb ... 228s Unpacking libtk8.6:arm64 (8.6.13-2) ... 228s Selecting previously unselected package libwfa2-0:arm64. 228s Preparing to unpack .../46-libwfa2-0_2.3.3-2_arm64.deb ... 228s Unpacking libwfa2-0:arm64 (2.3.3-2) ... 228s Selecting previously unselected package libvcflib2:arm64. 228s Preparing to unpack .../47-libvcflib2_1.0.9+dfsg1-3_arm64.deb ... 228s Unpacking libvcflib2:arm64 (1.0.9+dfsg1-3) ... 228s Selecting previously unselected package zip. 228s Preparing to unpack .../48-zip_3.0-13_arm64.deb ... 228s Unpacking zip (3.0-13) ... 228s Selecting previously unselected package unzip. 228s Preparing to unpack .../49-unzip_6.0-28ubuntu3_arm64.deb ... 228s Unpacking unzip (6.0-28ubuntu3) ... 229s Selecting previously unselected package xdg-utils. 229s Preparing to unpack .../50-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 229s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 229s Selecting previously unselected package libxt6t64:arm64. 229s Preparing to unpack .../51-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 229s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 229s Selecting previously unselected package r-base-core. 229s Preparing to unpack .../52-r-base-core_4.3.3-2build1_arm64.deb ... 229s Unpacking r-base-core (4.3.3-2build1) ... 231s Selecting previously unselected package r-cran-littler. 231s Preparing to unpack .../53-r-cran-littler_0.3.19-1_arm64.deb ... 231s Unpacking r-cran-littler (0.3.19-1) ... 231s Selecting previously unselected package littler. 231s Preparing to unpack .../54-littler_0.3.19-1_all.deb ... 231s Unpacking littler (0.3.19-1) ... 231s Selecting previously unselected package r-cran-pkgkitten. 231s Preparing to unpack .../55-r-cran-pkgkitten_0.2.3-1_all.deb ... 231s Unpacking r-cran-pkgkitten (0.2.3-1) ... 231s Selecting previously unselected package r-cran-rcpp. 231s Preparing to unpack .../56-r-cran-rcpp_1.0.12-1_arm64.deb ... 231s Unpacking r-cran-rcpp (1.0.12-1) ... 232s Selecting previously unselected package r-cran-plyr. 232s Preparing to unpack .../57-r-cran-plyr_1.8.9-1_arm64.deb ... 232s Unpacking r-cran-plyr (1.8.9-1) ... 232s Selecting previously unselected package r-cran-cli. 232s Preparing to unpack .../58-r-cran-cli_3.6.2-1_arm64.deb ... 232s Unpacking r-cran-cli (3.6.2-1) ... 232s Selecting previously unselected package r-cran-glue. 232s Preparing to unpack .../59-r-cran-glue_1.7.0-1_arm64.deb ... 232s Unpacking r-cran-glue (1.7.0-1) ... 232s Selecting previously unselected package r-cran-rlang. 232s Preparing to unpack .../60-r-cran-rlang_1.1.3-1_arm64.deb ... 232s Unpacking r-cran-rlang (1.1.3-1) ... 232s Selecting previously unselected package r-cran-lifecycle. 232s Preparing to unpack .../61-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 232s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 232s Selecting previously unselected package r-cran-gtable. 232s Preparing to unpack .../62-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 232s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 233s Selecting previously unselected package r-cran-isoband. 233s Preparing to unpack .../63-r-cran-isoband_0.2.7-1_arm64.deb ... 233s Unpacking r-cran-isoband (0.2.7-1) ... 233s Selecting previously unselected package r-cran-mass. 233s Preparing to unpack .../64-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 233s Unpacking r-cran-mass (7.3-60.0.1-1) ... 233s Selecting previously unselected package r-cran-lattice. 233s Preparing to unpack .../65-r-cran-lattice_0.22-5-1_arm64.deb ... 233s Unpacking r-cran-lattice (0.22-5-1) ... 233s Selecting previously unselected package r-cran-nlme. 233s Preparing to unpack .../66-r-cran-nlme_3.1.164-1_arm64.deb ... 233s Unpacking r-cran-nlme (3.1.164-1) ... 233s Selecting previously unselected package r-cran-matrix. 233s Preparing to unpack .../67-r-cran-matrix_1.6-5-1_arm64.deb ... 233s Unpacking r-cran-matrix (1.6-5-1) ... 234s Selecting previously unselected package r-cran-mgcv. 234s Preparing to unpack .../68-r-cran-mgcv_1.9-1-1_arm64.deb ... 234s Unpacking r-cran-mgcv (1.9-1-1) ... 234s Selecting previously unselected package r-cran-farver. 234s Preparing to unpack .../69-r-cran-farver_2.1.1-1_arm64.deb ... 234s Unpacking r-cran-farver (2.1.1-1) ... 234s Selecting previously unselected package r-cran-labeling. 234s Preparing to unpack .../70-r-cran-labeling_0.4.3-1_all.deb ... 234s Unpacking r-cran-labeling (0.4.3-1) ... 234s Selecting previously unselected package r-cran-colorspace. 234s Preparing to unpack .../71-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 234s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 234s Selecting previously unselected package r-cran-munsell. 234s Preparing to unpack .../72-r-cran-munsell_0.5.0-2build1_all.deb ... 234s Unpacking r-cran-munsell (0.5.0-2build1) ... 235s Selecting previously unselected package r-cran-r6. 235s Preparing to unpack .../73-r-cran-r6_2.5.1-1_all.deb ... 235s Unpacking r-cran-r6 (2.5.1-1) ... 235s Selecting previously unselected package r-cran-rcolorbrewer. 235s Preparing to unpack .../74-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 235s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 235s Selecting previously unselected package r-cran-viridislite. 235s Preparing to unpack .../75-r-cran-viridislite_0.4.2-2_all.deb ... 235s Unpacking r-cran-viridislite (0.4.2-2) ... 235s Selecting previously unselected package r-cran-scales. 235s Preparing to unpack .../76-r-cran-scales_1.3.0-1_all.deb ... 235s Unpacking r-cran-scales (1.3.0-1) ... 235s Selecting previously unselected package r-cran-fansi. 235s Preparing to unpack .../77-r-cran-fansi_1.0.5-1_arm64.deb ... 235s Unpacking r-cran-fansi (1.0.5-1) ... 235s Selecting previously unselected package r-cran-magrittr. 235s Preparing to unpack .../78-r-cran-magrittr_2.0.3-1_arm64.deb ... 235s Unpacking r-cran-magrittr (2.0.3-1) ... 235s Selecting previously unselected package r-cran-utf8. 235s Preparing to unpack .../79-r-cran-utf8_1.2.4-1_arm64.deb ... 235s Unpacking r-cran-utf8 (1.2.4-1) ... 236s Selecting previously unselected package r-cran-vctrs. 236s Preparing to unpack .../80-r-cran-vctrs_0.6.5-1_arm64.deb ... 236s Unpacking r-cran-vctrs (0.6.5-1) ... 236s Selecting previously unselected package r-cran-pillar. 236s Preparing to unpack .../81-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 236s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 236s Selecting previously unselected package r-cran-pkgconfig. 236s Preparing to unpack .../82-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 236s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 236s Selecting previously unselected package r-cran-tibble. 236s Preparing to unpack .../83-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 236s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 237s Selecting previously unselected package r-cran-withr. 237s Preparing to unpack .../84-r-cran-withr_2.5.0-1_all.deb ... 237s Unpacking r-cran-withr (2.5.0-1) ... 237s Selecting previously unselected package r-cran-ggplot2. 237s Preparing to unpack .../85-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 237s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 237s Selecting previously unselected package r-cran-gridbase. 237s Preparing to unpack .../86-r-cran-gridbase_0.4-7-5build1_all.deb ... 237s Unpacking r-cran-gridbase (0.4-7-5build1) ... 237s Selecting previously unselected package libvcflib-tools. 237s Preparing to unpack .../87-libvcflib-tools_1.0.9+dfsg1-3_arm64.deb ... 237s Unpacking libvcflib-tools (1.0.9+dfsg1-3) ... 238s Selecting previously unselected package autopkgtest-satdep. 238s Preparing to unpack .../88-1-autopkgtest-satdep.deb ... 238s Unpacking autopkgtest-satdep (0) ... 238s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 238s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 238s Setting up libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4) ... 238s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 238s Setting up libwfa2-0:arm64 (2.3.3-2) ... 238s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 238s Setting up libpaper1:arm64 (1.1.29) ... 239s 239s Creating config file /etc/papersize with new version 239s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 239s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 239s Setting up libdatrie1:arm64 (0.2.13-3) ... 239s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 239s Setting up libxcb-render0:arm64 (1.15-1) ... 239s Setting up unzip (6.0-28ubuntu3) ... 239s Setting up x11-common (1:7.7+23ubuntu2) ... 241s Setting up libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12) ... 241s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 241s Setting up libdeflate0:arm64 (1.19-1) ... 241s Setting up libxcb-shm0:arm64 (1.15-1) ... 241s Setting up libpaper-utils (1.1.29) ... 241s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 241s Setting up libfastahack0:arm64 (1.0.0+dfsg-11) ... 241s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 241s Setting up zip (3.0-13) ... 241s Setting up libblas3:arm64 (3.12.0-3) ... 241s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 241s Setting up fonts-dejavu-mono (2.37-8) ... 241s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 241s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 241s Setting up fonts-dejavu-core (2.37-8) ... 241s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 241s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 241s Setting up libwebp7:arm64 (1.3.2-0.4) ... 241s Setting up libreadline8t64:arm64 (8.2-3.1) ... 241s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 241s Setting up libthai-data (0.1.29-2) ... 241s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 241s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 241s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 241s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 241s Setting up libice6:arm64 (2:1.0.10-1build2) ... 241s Setting up liblapack3:arm64 (3.12.0-3) ... 241s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 241s Setting up libhts3:arm64 (1.18+ds-1) ... 241s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 241s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 241s Setting up libthai0:arm64 (0.1.29-2) ... 241s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 241s Setting up libtabixpp0:arm64 (1.1.2-2) ... 241s Setting up curl (8.5.0-2ubuntu7) ... 241s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 241s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 241s Setting up fontconfig (2.15.0-1ubuntu1) ... 244s Regenerating fonts cache... done. 244s Setting up libxft2:arm64 (2.3.6-1) ... 244s Setting up libtk8.6:arm64 (8.6.13-2) ... 244s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 244s Setting up libcairo2:arm64 (1.18.0-1) ... 244s Setting up libvcflib2:arm64 (1.0.9+dfsg1-3) ... 244s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 244s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 244s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 244s Setting up r-base-core (4.3.3-2build1) ... 244s 244s Creating config file /etc/R/Renviron with new version 245s Setting up r-cran-labeling (0.4.3-1) ... 245s Setting up r-cran-lattice (0.22-5-1) ... 245s Setting up r-cran-nlme (3.1.164-1) ... 245s Setting up r-cran-farver (2.1.1-1) ... 245s Setting up r-cran-viridislite (0.4.2-2) ... 245s Setting up r-cran-r6 (2.5.1-1) ... 245s Setting up r-cran-pkgkitten (0.2.3-1) ... 245s Setting up r-cran-magrittr (2.0.3-1) ... 245s Setting up r-cran-littler (0.3.19-1) ... 245s Setting up r-cran-rcpp (1.0.12-1) ... 245s Setting up r-cran-rlang (1.1.3-1) ... 245s Setting up r-cran-gridbase (0.4-7-5build1) ... 245s Setting up littler (0.3.19-1) ... 245s Setting up r-cran-withr (2.5.0-1) ... 245s Setting up r-cran-fansi (1.0.5-1) ... 245s Setting up r-cran-mass (7.3-60.0.1-1) ... 245s Setting up r-cran-glue (1.7.0-1) ... 245s Setting up r-cran-cli (3.6.2-1) ... 245s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 245s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 245s Setting up r-cran-utf8 (1.2.4-1) ... 245s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 245s Setting up r-cran-plyr (1.8.9-1) ... 245s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 245s Setting up r-cran-isoband (0.2.7-1) ... 245s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 245s Setting up r-cran-matrix (1.6-5-1) ... 245s Setting up r-cran-mgcv (1.9-1-1) ... 245s Setting up r-cran-vctrs (0.6.5-1) ... 245s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 245s Setting up r-cran-munsell (0.5.0-2build1) ... 245s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 245s Setting up r-cran-scales (1.3.0-1) ... 245s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 245s Setting up libvcflib-tools (1.0.9+dfsg1-3) ... 245s Setting up autopkgtest-satdep (0) ... 245s Processing triggers for man-db (2.12.0-3) ... 246s Processing triggers for install-info (7.1-3) ... 247s Processing triggers for libc-bin (2.39-0ubuntu2) ... 263s (Reading database ... 82173 files and directories currently installed.) 263s Removing autopkgtest-satdep (0) ... 264s autopkgtest [17:21:11]: test command1: vcffilter -f 'AC > 10' samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz | wc -l | grep 1471 264s autopkgtest [17:21:11]: test command1: [----------------------- 286s 1471 287s autopkgtest [17:21:34]: test command1: -----------------------] 287s command1 PASS 287s autopkgtest [17:21:34]: test command1: - - - - - - - - - - results - - - - - - - - - - 288s autopkgtest [17:21:35]: test command2: preparing testbed 290s Reading package lists... 291s Building dependency tree... 291s Reading state information... 292s Starting pkgProblemResolver with broken count: 0 292s Starting 2 pkgProblemResolver with broken count: 0 292s Done 294s The following NEW packages will be installed: 294s autopkgtest-satdep 294s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 294s Need to get 0 B/708 B of archives. 294s After this operation, 0 B of additional disk space will be used. 294s Get:1 /tmp/autopkgtest.mCKL6P/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 295s Selecting previously unselected package autopkgtest-satdep. 296s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82173 files and directories currently installed.) 296s Preparing to unpack .../2-autopkgtest-satdep.deb ... 296s Unpacking autopkgtest-satdep (0) ... 296s Setting up autopkgtest-satdep (0) ... 302s (Reading database ... 82173 files and directories currently installed.) 302s Removing autopkgtest-satdep (0) ... 303s autopkgtest [17:21:50]: test command2: vcffilter -f 'AC > 100' samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz | wc -l | grep 748 303s autopkgtest [17:21:50]: test command2: [----------------------- 322s 748 323s autopkgtest [17:22:10]: test command2: -----------------------] 323s autopkgtest [17:22:10]: test command2: - - - - - - - - - - results - - - - - - - - - - 323s command2 PASS 324s autopkgtest [17:22:11]: @@@@@@@@@@@@@@@@@@@@ summary 324s command1 PASS 324s command2 PASS 335s Creating nova instance adt-noble-arm64-libvcflib-20240316-171647-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...