0s autopkgtest [13:27:01]: starting date and time: 2024-03-17 13:27:01+0000 0s autopkgtest [13:27:01]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:27:01]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bf_estrm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libsbml,src:booth,src:cmake,src:cod-tools,src:cyrus-imapd,src:db5.3,src:feature-check,src:gdbm,src:gearmand,src:gromacs,src:inn2,src:konclude,src:libdbd-mariadb-perl,src:libdbd-mysql-perl,src:libwebsockets,src:lighttpd,src:mmdebstrap,src:netatalk,src:openbsd-inetd,src:openssl,src:perl,src:postgresql-16,src:puppet-lint,src:puppet-module-puppetlabs-stdlib,src:python3.12,src:readline,src:spiped,src:systemd,src:zile --apt-upgrade libsbml --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=libsbml/5.20.2+dfsg-2.1build3 booth/1.1-1ubuntu3 cmake/3.28.3-1build5 cod-tools/3.8.1+dfsg-1build2 cyrus-imapd/3.8.1-3build2 db5.3/5.3.28+dfsg2-5build1 feature-check/2.1.0-2 gdbm/1.23-5.1 gearmand/1.1.20+ds-1.2 gromacs/2023.3-1ubuntu2 inn2/2.7.2~20240212-1build2 konclude/0.7.0+1138+git20220514~dfsg-1build1 libdbd-mariadb-perl/1.22-1build3 libdbd-mysql-perl/4.052-1ubuntu2 libwebsockets/4.3.3-1.1build1 lighttpd/1.4.74-1ubuntu2 mmdebstrap/1.4.3-6 netatalk/3.1.18~ds-1build2 openbsd-inetd/0.20221205-3build1 openssl/3.0.13-0ubuntu1 perl/5.38.2-3.2 postgresql-16/16.2-1ubuntu2 puppet-lint/4.2.4-2 puppet-module-puppetlabs-stdlib/9.4.1-1 python3.12/3.12.2-4build2 readline/8.2-3.1 spiped/1.6.2-3build1 systemd/255.4-1ubuntu5 zile/2.6.2-2build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-18.secgroup --name adt-noble-arm64-libsbml-20240317-132701-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 68s autopkgtest [13:28:09]: testbed dpkg architecture: arm64 69s autopkgtest [13:28:10]: testbed apt version: 2.7.12 69s autopkgtest [13:28:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 69s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 69s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3716 kB] 71s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [526 kB] 71s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 71s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 71s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [679 kB] 71s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 71s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 71s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 71s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4044 kB] 71s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 71s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.4 kB] 71s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 73s Fetched 9241 kB in 3s (3100 kB/s) 73s Reading package lists... 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Calculating upgrade... 79s The following packages will be REMOVED: 79s libdb5.3 libgdbm-compat4 libgdbm6 libperl5.38 libreadline8 libssl3 79s The following NEW packages will be installed: 79s libdb5.3t64 libgdbm-compat4t64 libgdbm6t64 libperl5.38t64 libreadline8t64 79s libssl3t64 79s The following packages will be upgraded: 79s libnss-systemd libpam-systemd libpython3.12-minimal libpython3.12-stdlib 79s libsystemd-shared libsystemd0 libudev1 openssl perl perl-base 79s perl-modules-5.38 python3.12 python3.12-minimal readline-common systemd 79s systemd-dev systemd-resolved systemd-sysv systemd-timesyncd udev 79s 20 upgraded, 6 newly installed, 6 to remove and 0 not upgraded. 79s Need to get 28.0 MB of archives. 79s After this operation, 236 kB of additional disk space will be used. 79s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 79s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd0 arm64 255.4-1ubuntu5 [424 kB] 79s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-dev all 255.4-1ubuntu5 [103 kB] 79s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libudev1 arm64 255.4-1ubuntu5 [173 kB] 79s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 80s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd arm64 255.4-1ubuntu5 [3403 kB] 80s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 udev arm64 255.4-1ubuntu5 [1852 kB] 80s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-sysv arm64 255.4-1ubuntu5 [11.9 kB] 80s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnss-systemd arm64 255.4-1ubuntu5 [154 kB] 80s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam-systemd arm64 255.4-1ubuntu5 [232 kB] 80s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-timesyncd arm64 255.4-1ubuntu5 [34.8 kB] 80s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd-shared arm64 255.4-1ubuntu5 [2016 kB] 80s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-resolved arm64 255.4-1ubuntu5 [291 kB] 80s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.12 arm64 3.12.2-4build2 [645 kB] 80s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.12-minimal arm64 3.12.2-4build2 [2189 kB] 80s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12-minimal arm64 3.12.2-4build2 [829 kB] 80s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 80s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12-stdlib arm64 3.12.2-4build2 [2002 kB] 80s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-5build1 [719 kB] 80s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm6t64 arm64 1.23-5.1 [34.3 kB] 80s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm-compat4t64 arm64 1.23-5.1 [6576 B] 80s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libperl5.38t64 arm64 5.38.2-3.2 [4771 kB] 80s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl arm64 5.38.2-3.2 [231 kB] 80s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-base arm64 5.38.2-3.2 [1777 kB] 80s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 80s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 81s Fetched 28.0 MB in 2s (17.2 MB/s) 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 81s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 81s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 82s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_arm64.deb ... 82s Unpacking libsystemd0:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 82s Setting up libsystemd0:arm64 (255.4-1ubuntu5) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 82s Preparing to unpack .../systemd-dev_255.4-1ubuntu5_all.deb ... 82s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 82s Preparing to unpack .../libudev1_255.4-1ubuntu5_arm64.deb ... 82s Unpacking libudev1:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 82s Setting up libudev1:arm64 (255.4-1ubuntu5) ... 82s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 82s wget depends on libssl3 (>= 3.0.0). 82s u-boot-tools depends on libssl3 (>= 3.0.0). 82s tnftp depends on libssl3 (>= 3.0.0). 82s tcpdump depends on libssl3 (>= 3.0.0). 82s systemd-resolved depends on libssl3 (>= 3.0.0). 82s systemd depends on libssl3 (>= 3.0.0). 82s sudo depends on libssl3 (>= 3.0.0). 82s sbsigntool depends on libssl3 (>= 3.0.0). 82s rsync depends on libssl3 (>= 3.0.0). 82s python3-cryptography depends on libssl3 (>= 3.0.0). 82s openssh-server depends on libssl3 (>= 3.0.10). 82s openssh-client depends on libssl3 (>= 3.0.10). 82s mtd-utils depends on libssl3 (>= 3.0.0). 82s mokutil depends on libssl3 (>= 3.0.0). 82s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 82s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 82s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 82s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 82s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 82s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 82s libnvme1 depends on libssl3 (>= 3.0.0). 82s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 82s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 82s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 82s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 82s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 82s kmod depends on libssl3 (>= 3.0.0). 82s dhcpcd-base depends on libssl3 (>= 3.0.0). 82s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 82s 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 82s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 82s Selecting previously unselected package libssl3t64:arm64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 82s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 82s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 82s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 82s Preparing to unpack .../systemd_255.4-1ubuntu5_arm64.deb ... 82s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 82s Preparing to unpack .../udev_255.4-1ubuntu5_arm64.deb ... 82s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 83s Preparing to unpack .../libsystemd-shared_255.4-1ubuntu5_arm64.deb ... 83s Unpacking libsystemd-shared:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 83s Setting up libsystemd-shared:arm64 (255.4-1ubuntu5) ... 83s Setting up systemd-dev (255.4-1ubuntu5) ... 83s Setting up systemd (255.4-1ubuntu5) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 84s Preparing to unpack .../0-systemd-sysv_255.4-1ubuntu5_arm64.deb ... 84s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 84s Preparing to unpack .../1-libnss-systemd_255.4-1ubuntu5_arm64.deb ... 84s Unpacking libnss-systemd:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 84s Preparing to unpack .../2-libpam-systemd_255.4-1ubuntu5_arm64.deb ... 84s Unpacking libpam-systemd:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 84s Preparing to unpack .../3-systemd-timesyncd_255.4-1ubuntu5_arm64.deb ... 84s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 84s Preparing to unpack .../4-systemd-resolved_255.4-1ubuntu5_arm64.deb ... 84s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 84s Preparing to unpack .../5-python3.12_3.12.2-4build2_arm64.deb ... 84s Unpacking python3.12 (3.12.2-4build2) over (3.12.2-1) ... 84s Preparing to unpack .../6-python3.12-minimal_3.12.2-4build2_arm64.deb ... 84s Unpacking python3.12-minimal (3.12.2-4build2) over (3.12.2-1) ... 84s Preparing to unpack .../7-libpython3.12-minimal_3.12.2-4build2_arm64.deb ... 84s Unpacking libpython3.12-minimal:arm64 (3.12.2-4build2) over (3.12.2-1) ... 84s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 84s parted depends on libreadline8 (>= 6.0). 84s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 84s gpgsm depends on libreadline8 (>= 6.0). 84s gpgconf depends on libreadline8 (>= 6.0). 84s gpg depends on libreadline8 (>= 6.0). 84s gawk depends on libreadline8 (>= 6.0). 84s fdisk depends on libreadline8 (>= 6.0). 84s 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 84s Removing libreadline8:arm64 (8.2-3) ... 84s Selecting previously unselected package libreadline8t64:arm64. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74748 files and directories currently installed.) 85s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 85s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 85s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 85s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 85s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 85s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 85s Preparing to unpack .../libpython3.12-stdlib_3.12.2-4build2_arm64.deb ... 85s Unpacking libpython3.12-stdlib:arm64 (3.12.2-4build2) over (3.12.2-1) ... 85s dpkg: libperl5.38:arm64: dependency problems, but removing anyway as you requested: 85s perl depends on libperl5.38 (= 5.38.2-3). 85s 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 85s Removing libperl5.38:arm64 (5.38.2-3) ... 85s dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: 85s libsasl2-modules-db:arm64 depends on libdb5.3. 85s libpam-modules:arm64 depends on libdb5.3. 85s iproute2 depends on libdb5.3. 85s apt-utils depends on libdb5.3. 85s 85s Removing libdb5.3:arm64 (5.3.28+dfsg2-4) ... 85s Selecting previously unselected package libdb5.3t64:arm64. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74231 files and directories currently installed.) 85s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5build1_arm64.deb ... 85s Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-5build1) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74237 files and directories currently installed.) 85s Removing libgdbm-compat4:arm64 (1.23-5) ... 85s dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested: 85s python3-gdbm:arm64 depends on libgdbm6 (>= 1.16). 85s man-db depends on libgdbm6 (>= 1.16). 85s 85s Removing libgdbm6:arm64 (1.23-5) ... 85s Selecting previously unselected package libgdbm6t64:arm64. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74227 files and directories currently installed.) 85s Preparing to unpack .../libgdbm6t64_1.23-5.1_arm64.deb ... 85s Unpacking libgdbm6t64:arm64 (1.23-5.1) ... 85s Selecting previously unselected package libgdbm-compat4t64:arm64. 85s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_arm64.deb ... 85s Unpacking libgdbm-compat4t64:arm64 (1.23-5.1) ... 85s Selecting previously unselected package libperl5.38t64:arm64. 85s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_arm64.deb ... 85s Unpacking libperl5.38t64:arm64 (5.38.2-3.2) ... 85s Preparing to unpack .../perl_5.38.2-3.2_arm64.deb ... 86s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ... 86s Preparing to unpack .../perl-base_5.38.2-3.2_arm64.deb ... 86s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 86s Setting up perl-base (5.38.2-3.2) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74768 files and directories currently installed.) 86s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 86s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 86s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 86s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 86s Setting up systemd-sysv (255.4-1ubuntu5) ... 86s Setting up libgdbm6t64:arm64 (1.23-5.1) ... 86s Setting up libgdbm-compat4t64:arm64 (1.23-5.1) ... 86s Setting up libpython3.12-minimal:arm64 (3.12.2-4build2) ... 86s Setting up libnss-systemd:arm64 (255.4-1ubuntu5) ... 86s Setting up perl-modules-5.38 (5.38.2-3.2) ... 86s Setting up systemd-timesyncd (255.4-1ubuntu5) ... 87s Setting up udev (255.4-1ubuntu5) ... 88s Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-5build1) ... 88s Setting up libpam-systemd:arm64 (255.4-1ubuntu5) ... 88s Setting up libperl5.38t64:arm64 (5.38.2-3.2) ... 88s Setting up openssl (3.0.13-0ubuntu1) ... 88s Setting up readline-common (8.2-3.1) ... 88s Setting up systemd-resolved (255.4-1ubuntu5) ... 89s Setting up python3.12-minimal (3.12.2-4build2) ... 90s Setting up perl (5.38.2-3.2) ... 90s Setting up libreadline8t64:arm64 (8.2-3.1) ... 90s Setting up libpython3.12-stdlib:arm64 (3.12.2-4build2) ... 90s Setting up python3.12 (3.12.2-4build2) ... 92s Processing triggers for systemd (255.4-1ubuntu5) ... 92s Processing triggers for man-db (2.12.0-3) ... 93s Processing triggers for dbus (1.14.10-4ubuntu1) ... 93s Processing triggers for install-info (7.1-3) ... 93s Processing triggers for initramfs-tools (0.142ubuntu20) ... 93s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 93s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 111s System running in EFI mode, skipping. 111s Processing triggers for libc-bin (2.39-0ubuntu2) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 114s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 115s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 116s Reading package lists... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s Calculating upgrade... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [13:28:59]: rebooting testbed after setup commands that affected boot 306s autopkgtest [13:32:07]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 309s autopkgtest [13:32:10]: @@@@@@@@@@@@@@@@@@@@ apt-source libsbml 319s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe libsbml 5.20.2+dfsg-2.1build3 (dsc) [3915 B] 319s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe libsbml 5.20.2+dfsg-2.1build3 (tar) [15.8 MB] 319s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe libsbml 5.20.2+dfsg-2.1build3 (diff) [24.2 kB] 319s gpgv: Signature made Sat Mar 16 22:17:30 2024 UTC 319s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 319s gpgv: Can't check signature: No public key 319s dpkg-source: warning: cannot verify inline signature for ./libsbml_5.20.2+dfsg-2.1build3.dsc: no acceptable signature found 320s autopkgtest [13:32:21]: testing package libsbml version 5.20.2+dfsg-2.1build3 321s autopkgtest [13:32:22]: build not needed 324s autopkgtest [13:32:25]: test autodep8-python3: preparing testbed 328s Reading package lists... 328s Building dependency tree... 328s Reading state information... 328s Starting pkgProblemResolver with broken count: 0 329s Starting 2 pkgProblemResolver with broken count: 0 329s Done 329s The following additional packages will be installed: 329s libpython3.11-minimal libpython3.11-stdlib libpython3.12t64 python3-all 329s python3-distutils python3-lib2to3 python3-sbml5 python3.11 329s python3.11-minimal swig 329s Suggested packages: 329s python3.11-venv python3.11-doc binfmt-support swig-doc swig-examples 329s The following NEW packages will be installed: 329s autopkgtest-satdep libpython3.11-minimal libpython3.11-stdlib 329s libpython3.12t64 python3-all python3-distutils python3-lib2to3 python3-sbml5 329s python3.11 python3.11-minimal swig 329s 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. 329s Need to get 12.7 MB/12.7 MB of archives. 329s After this operation, 64.9 MB of additional disk space will be used. 329s Get:1 /tmp/autopkgtest.GSoLNb/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 329s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 330s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 330s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 330s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 330s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12t64 arm64 3.12.2-4build2 [2279 kB] 330s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] 330s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] 330s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 330s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 swig arm64 4.2.0-2ubuntu1 [1152 kB] 330s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-sbml5 arm64 5.20.2+dfsg-2.1build3 [3538 kB] 331s Fetched 12.7 MB in 1s (10.9 MB/s) 331s Selecting previously unselected package libpython3.11-minimal:arm64. 331s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74768 files and directories currently installed.) 331s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ... 331s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 331s Selecting previously unselected package python3.11-minimal. 331s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ... 331s Unpacking python3.11-minimal (3.11.8-1) ... 331s Selecting previously unselected package libpython3.11-stdlib:arm64. 331s Preparing to unpack .../02-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 331s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 331s Selecting previously unselected package python3.11. 331s Preparing to unpack .../03-python3.11_3.11.8-1_arm64.deb ... 331s Unpacking python3.11 (3.11.8-1) ... 331s Selecting previously unselected package libpython3.12t64:arm64. 331s Preparing to unpack .../04-libpython3.12t64_3.12.2-4build2_arm64.deb ... 331s Unpacking libpython3.12t64:arm64 (3.12.2-4build2) ... 332s Selecting previously unselected package python3-lib2to3. 332s Preparing to unpack .../05-python3-lib2to3_3.11.5-1_all.deb ... 332s Unpacking python3-lib2to3 (3.11.5-1) ... 332s Selecting previously unselected package python3-distutils. 332s Preparing to unpack .../06-python3-distutils_3.11.5-1_all.deb ... 332s Unpacking python3-distutils (3.11.5-1) ... 332s Selecting previously unselected package python3-all. 332s Preparing to unpack .../07-python3-all_3.12.1-0ubuntu2_arm64.deb ... 332s Unpacking python3-all (3.12.1-0ubuntu2) ... 332s Selecting previously unselected package swig. 332s Preparing to unpack .../08-swig_4.2.0-2ubuntu1_arm64.deb ... 332s Unpacking swig (4.2.0-2ubuntu1) ... 332s Selecting previously unselected package python3-sbml5. 332s Preparing to unpack .../09-python3-sbml5_5.20.2+dfsg-2.1build3_arm64.deb ... 332s Unpacking python3-sbml5 (5.20.2+dfsg-2.1build3) ... 332s Selecting previously unselected package autopkgtest-satdep. 332s Preparing to unpack .../10-1-autopkgtest-satdep.deb ... 332s Unpacking autopkgtest-satdep (0) ... 332s Setting up swig (4.2.0-2ubuntu1) ... 332s Setting up libpython3.12t64:arm64 (3.12.2-4build2) ... 332s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 332s Setting up python3-lib2to3 (3.11.5-1) ... 333s Setting up python3-distutils (3.11.5-1) ... 333s python3.12: can't get files for byte-compilation 333s Setting up python3.11-minimal (3.11.8-1) ... 334s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 334s Setting up python3-all (3.12.1-0ubuntu2) ... 334s Setting up python3.11 (3.11.8-1) ... 334s Setting up python3-sbml5 (5.20.2+dfsg-2.1build3) ... 335s Setting up autopkgtest-satdep (0) ... 335s Processing triggers for systemd (255.4-1ubuntu5) ... 335s Processing triggers for man-db (2.12.0-3) ... 336s Processing triggers for libc-bin (2.39-0ubuntu2) ... 339s (Reading database ... 76545 files and directories currently installed.) 339s Removing autopkgtest-satdep (0) ... 339s autopkgtest [13:32:40]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import libsbml; print(libsbml)" ; done 339s autopkgtest [13:32:40]: test autodep8-python3: [----------------------- 340s autopkgtest [13:32:41]: test autodep8-python3: -----------------------] 341s autopkgtest [13:32:42]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 341s autodep8-python3 PASS (superficial) 341s autopkgtest [13:32:42]: @@@@@@@@@@@@@@@@@@@@ summary 341s autodep8-python3 PASS (superficial) 345s Creating nova instance adt-noble-arm64-libsbml-20240317-132701-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240317.img (UUID e1706a76-a641-4f6f-90fe-65f00771b7d2)...