0s autopkgtest [17:23:41]: starting date and time: 2024-03-24 17:23:41+0000 0s autopkgtest [17:23:41]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [17:23:41]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qrn40nyw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade libgff --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-10.secgroup --name adt-noble-arm64-libgff-20240324-165439-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 108s autopkgtest [17:25:29]: testbed dpkg architecture: arm64 108s autopkgtest [17:25:29]: testbed apt version: 2.7.12 108s autopkgtest [17:25:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 109s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 110s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 111s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 111s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 111s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 112s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 112s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 112s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 118s Fetched 9850 kB in 4s (2579 kB/s) 118s Reading package lists... 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s Calculating upgrade... 125s The following packages will be REMOVED: 125s libssl3 125s The following NEW packages will be installed: 125s libssl3t64 125s The following packages have been kept back: 125s curl 125s The following packages will be upgraded: 125s openssl 125s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 125s Need to get 2777 kB of archives. 125s After this operation, 139 kB of additional disk space will be used. 125s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 126s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 127s Fetched 2777 kB in 1s (2127 kB/s) 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 128s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 128s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 128s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 128s wget depends on libssl3 (>= 3.0.0). 128s u-boot-tools depends on libssl3 (>= 3.0.0). 128s tnftp depends on libssl3 (>= 3.0.0). 128s tcpdump depends on libssl3 (>= 3.0.0). 128s systemd-resolved depends on libssl3 (>= 3.0.0). 128s systemd depends on libssl3 (>= 3.0.0). 128s sudo depends on libssl3 (>= 3.0.0). 128s sbsigntool depends on libssl3 (>= 3.0.0). 128s rsync depends on libssl3 (>= 3.0.0). 128s python3-cryptography depends on libssl3 (>= 3.0.0). 128s openssh-server depends on libssl3 (>= 3.0.10). 128s openssh-client depends on libssl3 (>= 3.0.10). 128s mtd-utils depends on libssl3 (>= 3.0.0). 128s mokutil depends on libssl3 (>= 3.0.0). 128s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 128s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 128s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 128s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 128s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 128s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 128s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 128s libnvme1 depends on libssl3 (>= 3.0.0). 128s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 128s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 128s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 128s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 128s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 128s kmod depends on libssl3 (>= 3.0.0). 128s dhcpcd-base depends on libssl3 (>= 3.0.0). 128s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 128s 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 128s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 128s Selecting previously unselected package libssl3t64:arm64. 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 128s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 128s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 128s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 128s Setting up openssl (3.0.13-0ubuntu2) ... 128s Processing triggers for man-db (2.12.0-3) ... 129s Processing triggers for libc-bin (2.39-0ubuntu6) ... 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 132s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 133s sh: Attempting to set up Debian/Ubuntu apt sources automatically 133s sh: Distribution appears to be Ubuntu 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 137s eatmydata is already the newest version (131-1). 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s dbus is already the newest version (1.14.10-4ubuntu1). 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s rng-tools-debian is already the newest version (2.4). 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s The following packages will be REMOVED: 142s cloud-init* python3-configobj* python3-debconf* 143s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 143s After this operation, 3256 kB disk space will be freed. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 143s Removing cloud-init (24.1.2-0ubuntu1) ... 144s Removing python3-configobj (5.0.8-3) ... 144s Removing python3-debconf (1.5.86) ... 145s Processing triggers for man-db (2.12.0-3) ... 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 145s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 147s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 147s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 147s invoke-rc.d: policy-rc.d denied execution of try-restart. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 149s linux-generic is already the newest version (6.8.0-11.11+1). 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 149s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 149s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 156s Reading package lists... 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s Calculating upgrade... 158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s autopkgtest [17:26:21]: rebooting testbed after setup commands that affected boot 318s autopkgtest [17:28:59]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 321s autopkgtest [17:29:02]: @@@@@@@@@@@@@@@@@@@@ apt-source libgff 323s Get:1 http://ftpmaster.internal/ubuntu noble/universe libgff 2.0.0-3 (dsc) [2028 B] 323s Get:2 http://ftpmaster.internal/ubuntu noble/universe libgff 2.0.0-3 (tar) [102 kB] 323s Get:3 http://ftpmaster.internal/ubuntu noble/universe libgff 2.0.0-3 (diff) [4272 B] 323s gpgv: Signature made Fri Jan 21 15:37:39 2022 UTC 323s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 323s gpgv: issuer "tille@debian.org" 323s gpgv: Can't check signature: No public key 323s dpkg-source: warning: cannot verify inline signature for ./libgff_2.0.0-3.dsc: no acceptable signature found 323s autopkgtest [17:29:04]: testing package libgff version 2.0.0-3 324s autopkgtest [17:29:05]: build not needed 325s autopkgtest [17:29:06]: test run-unit-test: preparing testbed 338s Reading package lists... 338s Building dependency tree... 338s Reading state information... 339s Starting pkgProblemResolver with broken count: 0 339s Starting 2 pkgProblemResolver with broken count: 0 339s Done 340s The following additional packages will be installed: 340s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 340s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 340s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libatomic1 340s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev libgff-dev 340s libgomp1 libhwasan0 libisl23 libitm1 liblsan0 libmpc3 libstdc++-13-dev 340s libtsan2 libubsan1 linux-libc-dev python-pysam-tests rpcsvc-proto 340s Suggested packages: 340s cpp-doc gcc-13-locales cpp-13-doc gcc-13-doc gcc-multilib manpages-dev 340s autoconf automake libtool flex bison gdb gcc-doc gdb-aarch64-linux-gnu 340s glibc-doc libstdc++-13-doc 340s Recommended packages: 340s manpages manpages-dev libc-devtools 340s The following NEW packages will be installed: 340s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 340s cpp-aarch64-linux-gnu g++ g++-13 g++-13-aarch64-linux-gnu 340s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 340s gcc-aarch64-linux-gnu libasan8 libatomic1 libc-dev-bin libc6-dev libcc1-0 340s libcrypt-dev libgcc-13-dev libgff-dev libgomp1 libhwasan0 libisl23 libitm1 340s liblsan0 libmpc3 libstdc++-13-dev libtsan2 libubsan1 linux-libc-dev 340s python-pysam-tests rpcsvc-proto 340s 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. 340s Need to get 63.0 MB/63.0 MB of archives. 340s After this operation, 223 MB of additional disk space will be used. 340s Get:1 /tmp/autopkgtest.8ClzBS/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 340s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB] 341s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 341s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 341s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 341s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB] 341s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 341s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 341s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 343s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 343s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 343s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 343s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 343s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 343s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 343s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 343s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 343s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 343s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 343s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 343s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 343s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 343s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 344s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 344s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 344s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 344s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 344s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 345s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 345s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 345s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 345s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 345s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libgff-dev arm64 2.0.0-3 [166 kB] 345s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 python-pysam-tests all 0.22.0+ds-1 [1430 kB] 345s Fetched 63.0 MB in 4s (14.4 MB/s) 346s Selecting previously unselected package libc-dev-bin. 346s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 346s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu6_arm64.deb ... 346s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 346s Selecting previously unselected package linux-libc-dev:arm64. 346s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 346s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 346s Selecting previously unselected package libcrypt-dev:arm64. 346s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 346s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 346s Selecting previously unselected package rpcsvc-proto. 346s Preparing to unpack .../03-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 346s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 346s Selecting previously unselected package libc6-dev:arm64. 346s Preparing to unpack .../04-libc6-dev_2.39-0ubuntu6_arm64.deb ... 346s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ... 347s Selecting previously unselected package libisl23:arm64. 347s Preparing to unpack .../05-libisl23_0.26-3_arm64.deb ... 347s Unpacking libisl23:arm64 (0.26-3) ... 347s Selecting previously unselected package libmpc3:arm64. 347s Preparing to unpack .../06-libmpc3_1.3.1-1_arm64.deb ... 347s Unpacking libmpc3:arm64 (1.3.1-1) ... 347s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 347s Preparing to unpack .../07-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 347s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 347s Selecting previously unselected package cpp-13. 347s Preparing to unpack .../08-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 347s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 347s Selecting previously unselected package cpp-aarch64-linux-gnu. 347s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 347s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 347s Selecting previously unselected package cpp. 347s Preparing to unpack .../10-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 347s Unpacking cpp (4:13.2.0-7ubuntu1) ... 347s Selecting previously unselected package libcc1-0:arm64. 347s Preparing to unpack .../11-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 347s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 347s Selecting previously unselected package libgomp1:arm64. 347s Preparing to unpack .../12-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 347s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libitm1:arm64. 348s Preparing to unpack .../13-libitm1_14-20240303-1ubuntu1_arm64.deb ... 348s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libatomic1:arm64. 348s Preparing to unpack .../14-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 348s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libasan8:arm64. 348s Preparing to unpack .../15-libasan8_14-20240303-1ubuntu1_arm64.deb ... 348s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package liblsan0:arm64. 348s Preparing to unpack .../16-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 348s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libtsan2:arm64. 348s Preparing to unpack .../17-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 348s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libubsan1:arm64. 348s Preparing to unpack .../18-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 348s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libhwasan0:arm64. 348s Preparing to unpack .../19-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 348s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 348s Selecting previously unselected package libgcc-13-dev:arm64. 348s Preparing to unpack .../20-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 348s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 348s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 348s Preparing to unpack .../21-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 348s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 349s Selecting previously unselected package gcc-13. 349s Preparing to unpack .../22-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 349s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 349s Selecting previously unselected package gcc-aarch64-linux-gnu. 349s 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Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 351s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 351s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 351s Setting up libgff-dev (2.0.0-3) ... 351s Setting up libmpc3:arm64 (1.3.1-1) ... 351s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 351s Setting up python-pysam-tests (0.22.0+ds-1) ... 351s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 351s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 351s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 351s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 351s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 351s Setting up libisl23:arm64 (0.26-3) ... 351s Setting up libc-dev-bin (2.39-0ubuntu6) ... 351s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 351s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 351s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 351s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 351s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 351s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 351s Setting up libc6-dev:arm64 (2.39-0ubuntu6) ... 351s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 351s Setting up cpp-13 (13.2.0-17ubuntu2) ... 351s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 351s Setting up gcc-13 (13.2.0-17ubuntu2) ... 351s Setting up cpp (4:13.2.0-7ubuntu1) ... 351s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 351s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 351s Setting up g++-13 (13.2.0-17ubuntu2) ... 351s Setting up gcc (4:13.2.0-7ubuntu1) ... 351s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 351s Setting up g++ (4:13.2.0-7ubuntu1) ... 351s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 351s Setting up build-essential (12.10ubuntu1) ... 351s Setting up autopkgtest-satdep (0) ... 351s Processing triggers for man-db (2.12.0-3) ... 352s Processing triggers for libc-bin (2.39-0ubuntu6) ... 357s (Reading database ... 78409 files and directories currently installed.) 357s Removing autopkgtest-satdep (0) ... 358s autopkgtest [17:29:39]: test run-unit-test: [----------------------- 358s Compiling ... 359s TestGFFParse.cpp: In function ‘int main(int, char**)’: 359s TestGFFParse.cpp:25:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 359s 25 | for (size_t j=0; j < f->attrs->Count(); ++j) { 359s | ~~^~~~~~~~~~~~~~~~~~~ 360s ------------------------------ 360s 360s Test 1 360s ENST00000431238 ENSG00000228572 gene_name NCRNA00108 transcript_name NCRNA00108-001 360s ENST00000399012 ENSG00000182378 gene_name PLCXD1 transcript_name PLCXD1-001 protein_id ENSP00000381976 360s had count of 2 360s PASS 360s ------------------------------- 360s Test 2 360s had count of NM_018390.2 NC_000024.9:PLCXD1 gbkey mRNA product "phosphatidylinositol-specific phospholipase C, X domain containing 1" note "Derived by automated computational analysis using gene prediction method: BestRefseq." insd_transcript_id NM_018390.2 db_xref GeneID:55344 protein_id NP_060860.1 360s NM_012227.1 NC_000024.9:GTPBP6 gbkey mRNA product "GTP binding protein 6 (putative)" note "Derived by automated computational analysis using gene prediction method: BestRefseq." exception "unclassified transcription discrepancy" insd_transcript_id NM_012227.1 db_xref GeneID:8225 protein_id NP_036359.1 360s NR_027232.1 NC_000024.9:NCRNA00107 gbkey misc_RNA product "non-protein coding RNA 107, transcript variant 1" note "Derived by automated computational analysis using gene prediction method: BestRefseq." db_xref GeneID:283981 360s NR_027231.1 NC_000024.9:NCRNA00107 gbkey misc_RNA product "non-protein coding RNA 107, transcript variant 2" note "Derived by automated computational analysis using gene prediction method: BestRefseq." db_xref GeneID:283981 360s NM_013239.3 NC_000024.9:PPP2R3B gbkey mRNA partial product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1" note "Derived by automated computational analysis using gene prediction method: BestRefseq." insd_transcript_id NM_013239.3 db_xref GeneID:28227 360s NM_199326.1 NC_000024.9:PPP2R3B gbkey mRNA partial product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 2" note "Derived by automated computational analysis using gene prediction method: BestRefseq." insd_transcript_id NM_199326.1 db_xref GeneID:28227 360s PASS 360s ------------------------------- 360s 6 360s autopkgtest [17:29:41]: test run-unit-test: -----------------------] 361s autopkgtest [17:29:42]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 361s run-unit-test PASS 361s autopkgtest [17:29:42]: @@@@@@@@@@@@@@@@@@@@ summary 361s run-unit-test PASS 376s Creating nova instance adt-noble-arm64-libgff-20240324-165439-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)...