0s autopkgtest [08:07:37]: starting date and time: 2024-03-25 08:07:37+0000 0s autopkgtest [08:07:37]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [08:07:37]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ci8nwmdw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:curl,src:gnutls28,src:libpsl,src:nettle,src:openssl,src:orthanc-python --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu8 gnutls28/3.8.3-1.1ubuntu2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-30.secgroup --name adt-noble-arm64-lammps-20240325-080737-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 94s autopkgtest [08:09:11]: testbed dpkg architecture: arm64 94s autopkgtest [08:09:11]: testbed apt version: 2.7.12 94s autopkgtest [08:09:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 96s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 97s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 97s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.8 kB] 97s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3987 kB] 98s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 98s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 98s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 98s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 98s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4363 kB] 98s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 98s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [71.0 kB] 98s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 103s Fetched 9851 kB in 4s (2567 kB/s) 104s Reading package lists... 108s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s Calculating upgrade... 110s The following packages will be REMOVED: 110s libssl3 110s The following NEW packages will be installed: 110s libssl3t64 110s The following packages have been kept back: 110s curl 110s The following packages will be upgraded: 110s openssl 111s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 111s Need to get 2777 kB of archives. 111s After this operation, 139 kB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 112s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 115s Fetched 2777 kB in 3s (944 kB/s) 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 115s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 115s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 115s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 115s wget depends on libssl3 (>= 3.0.0). 115s u-boot-tools depends on libssl3 (>= 3.0.0). 115s tnftp depends on libssl3 (>= 3.0.0). 115s tcpdump depends on libssl3 (>= 3.0.0). 115s systemd-resolved depends on libssl3 (>= 3.0.0). 115s systemd depends on libssl3 (>= 3.0.0). 115s sudo depends on libssl3 (>= 3.0.0). 115s sbsigntool depends on libssl3 (>= 3.0.0). 115s rsync depends on libssl3 (>= 3.0.0). 115s python3-cryptography depends on libssl3 (>= 3.0.0). 115s openssh-server depends on libssl3 (>= 3.0.10). 115s openssh-client depends on libssl3 (>= 3.0.10). 115s mtd-utils depends on libssl3 (>= 3.0.0). 115s mokutil depends on libssl3 (>= 3.0.0). 115s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 115s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 115s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 115s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 115s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 115s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 115s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 115s libnvme1 depends on libssl3 (>= 3.0.0). 115s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 115s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 115s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 115s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 115s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 115s kmod depends on libssl3 (>= 3.0.0). 115s dhcpcd-base depends on libssl3 (>= 3.0.0). 115s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 115s 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 115s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 115s Selecting previously unselected package libssl3t64:arm64. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 115s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 115s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 115s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 115s Setting up openssl (3.0.13-0ubuntu2) ... 115s Processing triggers for man-db (2.12.0-3) ... 116s Processing triggers for libc-bin (2.39-0ubuntu6) ... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 119s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 120s sh: Attempting to set up Debian/Ubuntu apt sources automatically 120s sh: Distribution appears to be Ubuntu 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 124s eatmydata is already the newest version (131-1). 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s dbus is already the newest version (1.14.10-4ubuntu1). 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s rng-tools-debian is already the newest version (2.4). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 129s The following packages will be REMOVED: 129s cloud-init* python3-configobj* python3-debconf* 129s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 129s After this operation, 3256 kB disk space will be freed. 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 129s Removing cloud-init (24.1.2-0ubuntu1) ... 131s Removing python3-configobj (5.0.8-3) ... 131s Removing python3-debconf (1.5.86) ... 131s Processing triggers for man-db (2.12.0-3) ... 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 132s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 133s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 133s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 133s invoke-rc.d: policy-rc.d denied execution of try-restart. 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s linux-generic is already the newest version (6.8.0-11.11+1). 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 136s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 136s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 141s Reading package lists... 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s Calculating upgrade... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s autopkgtest [08:10:02]: rebooting testbed after setup commands that affected boot 302s autopkgtest [08:12:39]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 305s autopkgtest [08:12:42]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 319s Get:1 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (dsc) [3139 B] 319s Get:2 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (tar) [153 MB] 319s Get:3 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (diff) [16.8 kB] 320s gpgv: Signature made Sun Feb 18 15:30:49 2024 UTC 320s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 320s gpgv: issuer "dparsons@debian.org" 320s gpgv: Can't check signature: No public key 320s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.dsc: no acceptable signature found 340s autopkgtest [08:13:17]: testing package lammps version 20240207+dfsg-1 341s autopkgtest [08:13:18]: build not needed 365s autopkgtest [08:13:42]: test crack: preparing testbed 366s Reading package lists... 367s Building dependency tree... 367s Reading state information... 368s Starting pkgProblemResolver with broken count: 0 368s Starting 2 pkgProblemResolver with broken count: 0 368s Done 369s The following additional packages will be installed: 369s cpp-12 fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-12 369s gcc-12-base gfortran-12 lammps lammps-data libaec0 libamd-comgr2 369s libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 369s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 369s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7 libfabric1 369s libfftw3-double3 libfontconfig1 libgcc-12-dev libgfortran-12-dev 369s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 369s libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 369s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins libhwloc15 369s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 369s liblammps0 liblapack3 liblerc4 libllvm17 liblsan0 libmpc3 libmunge2 369s libnetcdf19 libogg0 libopengl0 libopenmpi3 libpciaccess0 libpixman-1-0 369s libpmix2 libpnetcdf0d libproj25 libpython3.12 librdmacm1t64 libsharpyuv0 369s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 369s libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 libvtk9.1 libvulkan1 libwebp7 369s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 369s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 369s libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 369s linux-libc-dev mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 369s proj-data rpcsvc-proto x11-common 369s Suggested packages: 369s gcc-12-locales cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev 369s openkim-models glibc-doc manpages-dev libfftw3-bin libfftw3-dev glew-utils 369s proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples opencl-icd gfortran 369s | fortran-compiler 369s Recommended packages: 369s lammps-doc manpages manpages-dev libc-devtools libgl1-amber-dri 369s mesa-vulkan-drivers | vulkan-icd 369s The following NEW packages will be installed: 369s autopkgtest-satdep cpp-12 fontconfig-config fonts-dejavu-core 369s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 369s libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin 369s libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 369s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7 369s libfabric1 libfftw3-double3 libfontconfig1 libgcc-12-dev libgfortran-12-dev 369s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 369s libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 369s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins libhwloc15 369s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 369s liblammps0 liblapack3 liblerc4 libllvm17 liblsan0 libmpc3 libmunge2 369s libnetcdf19 libogg0 libopengl0 libopenmpi3 libpciaccess0 libpixman-1-0 369s libpmix2 libpnetcdf0d libproj25 libpython3.12 librdmacm1t64 libsharpyuv0 369s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 369s libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 libvtk9.1 libvulkan1 libwebp7 369s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 369s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 369s libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 369s linux-libc-dev mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 369s proj-data rpcsvc-proto x11-common 369s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 369s Need to get 173 MB/173 MB of archives. 369s After this operation, 717 MB of additional disk space will be used. 369s Get:1 /tmp/autopkgtest.yOdUk2/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 369s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12-base arm64 12.3.0-15ubuntu1 [45.5 kB] 369s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 370s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 370s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 cpp-12 arm64 12.3.0-15ubuntu1 [9585 kB] 370s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 370s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 370s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 370s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 370s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 370s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 370s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 370s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 370s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 370s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 370s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 370s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 370s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libgcc-12-dev arm64 12.3.0-15ubuntu1 [1157 kB] 370s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12 arm64 12.3.0-15ubuntu1 [19.1 MB] 371s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 371s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libgfortran-12-dev arm64 12.3.0-15ubuntu1 [471 kB] 371s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB] 371s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 371s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 371s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 371s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB] 371s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 gfortran-12 arm64 12.3.0-15ubuntu1 [10.1 MB] 371s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 lammps-data all 20240207+dfsg-1 [9700 kB] 371s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 371s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 372s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 372s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 372s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 372s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 372s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 372s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 372s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 372s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 372s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 372s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 372s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 372s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 372s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 372s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 373s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 373s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 373s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 373s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 373s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3build1 [541 kB] 373s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB] 373s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 373s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 373s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 373s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 373s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 373s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 373s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 373s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 373s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 373s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 373s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 373s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 373s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 373s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 373s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 373s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 373s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 373s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 373s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2 [41.5 kB] 373s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4 [200 kB] 373s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 373s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 373s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 373s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 373s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 373s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 373s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 373s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libkim-api2 arm64 2.3.0-1 [554 kB] 373s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 373s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 373s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 373s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 373s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 373s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 373s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 373s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB] 373s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 373s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB] 373s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libpnetcdf0d arm64 1.12.3-2 [842 kB] 373s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 373s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 373s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libogg0 arm64 1.3.5-3 [22.1 kB] 373s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 373s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 373s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 373s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 373s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 373s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 373s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 373s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 373s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbmalloc2 arm64 2021.11.0-2ubuntu2 [43.8 kB] 373s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbbind-2-5 arm64 2021.11.0-2ubuntu2 [16.4 kB] 374s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbb12 arm64 2021.11.0-2ubuntu2 [79.9 kB] 374s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 374s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libtheora0 arm64 1.1.1+dfsg.1-16.1 [221 kB] 374s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 374s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 374s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 374s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 374s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libvtk9.1 arm64 9.1.0+really9.1.0+dfsg2-7build1 [19.2 MB] 375s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 liblammps0 arm64 20240207+dfsg-1 [6751 kB] 375s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB] 375s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB] 375s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 375s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 lammps arm64 20240207+dfsg-1 [14.9 kB] 376s Fetched 173 MB in 6s (28.6 MB/s) 376s Selecting previously unselected package gcc-12-base:arm64. 376s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 376s Preparing to unpack .../000-gcc-12-base_12.3.0-15ubuntu1_arm64.deb ... 376s Unpacking gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 376s Selecting previously unselected package libisl23:arm64. 376s Preparing to unpack .../001-libisl23_0.26-3_arm64.deb ... 376s Unpacking libisl23:arm64 (0.26-3) ... 376s Selecting previously unselected package libmpc3:arm64. 376s Preparing to unpack .../002-libmpc3_1.3.1-1_arm64.deb ... 376s Unpacking libmpc3:arm64 (1.3.1-1) ... 377s Selecting previously unselected package cpp-12. 377s Preparing to unpack .../003-cpp-12_12.3.0-15ubuntu1_arm64.deb ... 377s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 377s Selecting previously unselected package fonts-dejavu-mono. 377s Preparing to unpack .../004-fonts-dejavu-mono_2.37-8_all.deb ... 377s Unpacking fonts-dejavu-mono (2.37-8) ... 377s Selecting previously unselected package fonts-dejavu-core. 377s Preparing to unpack .../005-fonts-dejavu-core_2.37-8_all.deb ... 377s Unpacking fonts-dejavu-core (2.37-8) ... 377s Selecting previously unselected package fontconfig-config. 377s Preparing to unpack .../006-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 378s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 378s Selecting previously unselected package libcc1-0:arm64. 378s Preparing to unpack .../007-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libgomp1:arm64. 378s Preparing to unpack .../008-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libitm1:arm64. 378s Preparing to unpack .../009-libitm1_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libatomic1:arm64. 378s Preparing to unpack .../010-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libasan8:arm64. 378s Preparing to unpack .../011-libasan8_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package liblsan0:arm64. 378s Preparing to unpack .../012-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libtsan2:arm64. 378s Preparing to unpack .../013-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 378s Selecting previously unselected package libubsan1:arm64. 378s Preparing to unpack .../014-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 378s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 379s Selecting previously unselected package libhwasan0:arm64. 379s Preparing to unpack .../015-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 379s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 379s Selecting previously unselected package libgcc-12-dev:arm64. 379s Preparing to unpack .../016-libgcc-12-dev_12.3.0-15ubuntu1_arm64.deb ... 379s Unpacking libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 379s Selecting previously unselected package gcc-12. 379s Preparing to unpack .../017-gcc-12_12.3.0-15ubuntu1_arm64.deb ... 379s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 380s Selecting previously unselected package libgfortran5:arm64. 380s Preparing to unpack .../018-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 380s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 380s Selecting previously unselected package libgfortran-12-dev:arm64. 380s Preparing to unpack .../019-libgfortran-12-dev_12.3.0-15ubuntu1_arm64.deb ... 380s Unpacking libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 380s Selecting previously unselected package libc-dev-bin. 380s Preparing to unpack .../020-libc-dev-bin_2.39-0ubuntu6_arm64.deb ... 380s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 380s Selecting previously unselected package linux-libc-dev:arm64. 380s Preparing to unpack .../021-linux-libc-dev_6.8.0-11.11_arm64.deb ... 380s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 380s Selecting previously unselected package libcrypt-dev:arm64. 380s Preparing to unpack .../022-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 380s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 381s Selecting previously unselected package rpcsvc-proto. 381s Preparing to unpack .../023-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 381s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 381s Selecting previously unselected package libc6-dev:arm64. 381s Preparing to unpack .../024-libc6-dev_2.39-0ubuntu6_arm64.deb ... 381s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ... 381s Selecting previously unselected package gfortran-12. 381s Preparing to unpack .../025-gfortran-12_12.3.0-15ubuntu1_arm64.deb ... 381s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 381s Selecting previously unselected package lammps-data. 381s Preparing to unpack .../026-lammps-data_20240207+dfsg-1_all.deb ... 381s Unpacking lammps-data (20240207+dfsg-1) ... 382s Selecting previously unselected package libaec0:arm64. 382s Preparing to unpack .../027-libaec0_1.1.2-1_arm64.deb ... 382s Unpacking libaec0:arm64 (1.1.2-1) ... 382s Selecting previously unselected package libllvm17:arm64. 382s Preparing to unpack .../028-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 382s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 384s Selecting previously unselected package libamd-comgr2:arm64. 384s Preparing to unpack .../029-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 384s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 385s Selecting previously unselected package libdrm-amdgpu1:arm64. 385s Preparing to unpack .../030-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 385s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 385s Selecting previously unselected package libhsakmt1:arm64. 385s Preparing to unpack .../031-libhsakmt1_5.7.0-1_arm64.deb ... 385s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 385s Selecting previously unselected package libhsa-runtime64-1. 385s Preparing to unpack .../032-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 385s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 385s Selecting previously unselected package libamdhip64-5. 385s Preparing to unpack .../033-libamdhip64-5_5.2.3-12_arm64.deb ... 385s Unpacking libamdhip64-5 (5.2.3-12) ... 385s Selecting previously unselected package libblas3:arm64. 385s Preparing to unpack .../034-libblas3_3.12.0-3_arm64.deb ... 385s Unpacking libblas3:arm64 (3.12.0-3) ... 385s Selecting previously unselected package libfontconfig1:arm64. 385s Preparing to unpack .../035-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 385s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 385s Selecting previously unselected package libpixman-1-0:arm64. 385s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 385s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 385s Selecting previously unselected package libxcb-render0:arm64. 385s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 385s Unpacking libxcb-render0:arm64 (1.15-1) ... 385s Selecting previously unselected package libxcb-shm0:arm64. 385s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 385s Unpacking libxcb-shm0:arm64 (1.15-1) ... 385s Selecting previously unselected package libxrender1:arm64. 385s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 385s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 385s Selecting previously unselected package libcairo2:arm64. 386s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 386s Unpacking libcairo2:arm64 (1.18.0-1) ... 386s Selecting previously unselected package libdeflate0:arm64. 386s Preparing to unpack .../041-libdeflate0_1.19-1_arm64.deb ... 386s Unpacking libdeflate0:arm64 (1.19-1) ... 386s Selecting previously unselected package libdouble-conversion3:arm64. 386s Preparing to unpack .../042-libdouble-conversion3_3.3.0-1_arm64.deb ... 386s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 386s Selecting previously unselected package libdrm-nouveau2:arm64. 386s Preparing to unpack .../043-libdrm-nouveau2_2.4.120-2_arm64.deb ... 386s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 386s Selecting previously unselected package libdrm-radeon1:arm64. 386s Preparing to unpack .../044-libdrm-radeon1_2.4.120-2_arm64.deb ... 386s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 386s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 386s Preparing to unpack .../045-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 386s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 386s Selecting previously unselected package librdmacm1t64:arm64. 386s Preparing to unpack .../046-librdmacm1t64_50.0-2_arm64.deb ... 386s Unpacking librdmacm1t64:arm64 (50.0-2) ... 386s Selecting previously unselected package libfabric1:arm64. 386s Preparing to unpack .../047-libfabric1_1.17.0-3build1_arm64.deb ... 386s Unpacking libfabric1:arm64 (1.17.0-3build1) ... 386s Selecting previously unselected package libfftw3-double3:arm64. 386s Preparing to unpack .../048-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ... 386s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 386s Selecting previously unselected package libvulkan1:arm64. 386s Preparing to unpack .../049-libvulkan1_1.3.275.0-1_arm64.deb ... 386s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 386s Selecting previously unselected package libglapi-mesa:arm64. 386s Preparing to unpack .../050-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 386s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 386s Selecting previously unselected package libxcb-dri3-0:arm64. 386s Preparing to unpack .../051-libxcb-dri3-0_1.15-1_arm64.deb ... 386s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 386s Selecting previously unselected package libgl1-mesa-dri:arm64. 386s Preparing to unpack .../052-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 386s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 387s Selecting previously unselected package libglvnd0:arm64. 387s Preparing to unpack .../053-libglvnd0_1.7.0-1_arm64.deb ... 387s Unpacking libglvnd0:arm64 (1.7.0-1) ... 387s Selecting previously unselected package libx11-xcb1:arm64. 387s Preparing to unpack .../054-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 387s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 387s Selecting previously unselected package libxcb-dri2-0:arm64. 387s Preparing to unpack .../055-libxcb-dri2-0_1.15-1_arm64.deb ... 387s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 387s Selecting previously unselected package libxcb-glx0:arm64. 387s Preparing to unpack .../056-libxcb-glx0_1.15-1_arm64.deb ... 387s Unpacking libxcb-glx0:arm64 (1.15-1) ... 387s Selecting previously unselected package libxcb-present0:arm64. 387s Preparing to unpack .../057-libxcb-present0_1.15-1_arm64.deb ... 387s Unpacking libxcb-present0:arm64 (1.15-1) ... 387s Selecting previously unselected package libxcb-randr0:arm64. 387s Preparing to unpack .../058-libxcb-randr0_1.15-1_arm64.deb ... 387s Unpacking libxcb-randr0:arm64 (1.15-1) ... 387s Selecting previously unselected package libxcb-sync1:arm64. 387s Preparing to unpack .../059-libxcb-sync1_1.15-1_arm64.deb ... 387s Unpacking libxcb-sync1:arm64 (1.15-1) ... 387s Selecting previously unselected package libxcb-xfixes0:arm64. 387s Preparing to unpack .../060-libxcb-xfixes0_1.15-1_arm64.deb ... 387s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 387s Selecting previously unselected package libxfixes3:arm64. 387s Preparing to unpack .../061-libxfixes3_1%3a6.0.0-2_arm64.deb ... 387s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 387s Selecting previously unselected package libxshmfence1:arm64. 387s Preparing to unpack .../062-libxshmfence1_1.3-1build4_arm64.deb ... 387s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 388s Selecting previously unselected package libxxf86vm1:arm64. 388s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 388s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 388s Selecting previously unselected package libglx-mesa0:arm64. 388s Preparing to unpack .../064-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 388s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 388s Selecting previously unselected package libglx0:arm64. 388s Preparing to unpack .../065-libglx0_1.7.0-1_arm64.deb ... 388s Unpacking libglx0:arm64 (1.7.0-1) ... 388s Selecting previously unselected package libgl1:arm64. 388s Preparing to unpack .../066-libgl1_1.7.0-1_arm64.deb ... 388s Unpacking libgl1:arm64 (1.7.0-1) ... 388s Selecting previously unselected package libgl2ps1.4. 388s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2_arm64.deb ... 388s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 388s Selecting previously unselected package libglew2.2:arm64. 388s Preparing to unpack .../068-libglew2.2_2.2.0-4_arm64.deb ... 388s Unpacking libglew2.2:arm64 (2.2.0-4) ... 388s Selecting previously unselected package libsz2:arm64. 388s Preparing to unpack .../069-libsz2_1.1.2-1_arm64.deb ... 388s Unpacking libsz2:arm64 (1.1.2-1) ... 388s Selecting previously unselected package libhdf5-103-1:arm64. 388s Preparing to unpack .../070-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 388s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 388s Selecting previously unselected package libhdf5-hl-100:arm64. 388s Preparing to unpack .../071-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 388s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 388s Selecting previously unselected package libhwloc15:arm64. 388s Preparing to unpack .../072-libhwloc15_2.10.0-1_arm64.deb ... 388s Unpacking libhwloc15:arm64 (2.10.0-1) ... 388s Selecting previously unselected package libjpeg-turbo8:arm64. 388s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 388s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 388s Selecting previously unselected package libjpeg8:arm64. 388s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 388s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 388s Selecting previously unselected package libjsoncpp25:arm64. 388s Preparing to unpack .../075-libjsoncpp25_1.9.5-6_arm64.deb ... 388s Unpacking libjsoncpp25:arm64 (1.9.5-6) ... 388s Selecting previously unselected package libkim-api2:arm64. 389s Preparing to unpack .../076-libkim-api2_2.3.0-1_arm64.deb ... 389s Unpacking libkim-api2:arm64 (2.3.0-1) ... 389s Selecting previously unselected package liblapack3:arm64. 389s Preparing to unpack .../077-liblapack3_3.12.0-3_arm64.deb ... 389s Unpacking liblapack3:arm64 (3.12.0-3) ... 389s Selecting previously unselected package libnetcdf19:arm64. 389s Preparing to unpack .../078-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 389s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 389s Selecting previously unselected package libmunge2:arm64. 389s Preparing to unpack .../079-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 389s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 389s Selecting previously unselected package libpciaccess0:arm64. 389s Preparing to unpack .../080-libpciaccess0_0.17-3_arm64.deb ... 389s Unpacking libpciaccess0:arm64 (0.17-3) ... 389s Selecting previously unselected package libxnvctrl0:arm64. 389s Preparing to unpack .../081-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 389s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 389s Selecting previously unselected package ocl-icd-libopencl1:arm64. 389s Preparing to unpack .../082-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 389s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 389s Selecting previously unselected package libhwloc-plugins:arm64. 389s Preparing to unpack .../083-libhwloc-plugins_2.10.0-1_arm64.deb ... 389s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 389s Selecting previously unselected package libpmix2:arm64. 389s Preparing to unpack .../084-libpmix2_5.0.1-4_arm64.deb ... 389s Unpacking libpmix2:arm64 (5.0.1-4) ... 389s Selecting previously unselected package libucx0:arm64. 389s Preparing to unpack .../085-libucx0_1.16.0+ds-4_arm64.deb ... 389s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 389s Selecting previously unselected package libopenmpi3:arm64. 390s Preparing to unpack .../086-libopenmpi3_4.1.6-5ubuntu1_arm64.deb ... 390s Unpacking libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 390s Selecting previously unselected package libpnetcdf0d:arm64. 390s Preparing to unpack .../087-libpnetcdf0d_1.12.3-2_arm64.deb ... 390s Unpacking libpnetcdf0d:arm64 (1.12.3-2) ... 390s Selecting previously unselected package libpython3.12:arm64. 390s Preparing to unpack .../088-libpython3.12_3.12.2-1_arm64.deb ... 390s Unpacking libpython3.12:arm64 (3.12.2-1) ... 390s Selecting previously unselected package libvoro++1. 390s Preparing to unpack .../089-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 390s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 390s Selecting previously unselected package libogg0:arm64. 390s Preparing to unpack .../090-libogg0_1.3.5-3_arm64.deb ... 390s Unpacking libogg0:arm64 (1.3.5-3) ... 390s Selecting previously unselected package libopengl0:arm64. 390s Preparing to unpack .../091-libopengl0_1.7.0-1_arm64.deb ... 390s Unpacking libopengl0:arm64 (1.7.0-1) ... 390s Selecting previously unselected package proj-data. 390s Preparing to unpack .../092-proj-data_9.3.1-1_all.deb ... 390s Unpacking proj-data (9.3.1-1) ... 391s Selecting previously unselected package libjbig0:arm64. 391s Preparing to unpack .../093-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 391s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 391s Selecting previously unselected package liblerc4:arm64. 391s Preparing to unpack .../094-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 391s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 391s Selecting previously unselected package libsharpyuv0:arm64. 391s Preparing to unpack .../095-libsharpyuv0_1.3.2-0.4_arm64.deb ... 391s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 391s Selecting previously unselected package libwebp7:arm64. 391s Preparing to unpack .../096-libwebp7_1.3.2-0.4_arm64.deb ... 391s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 391s Selecting previously unselected package libtiff6:arm64. 391s Preparing to unpack .../097-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 391s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 391s Selecting previously unselected package libproj25:arm64. 391s Preparing to unpack .../098-libproj25_9.3.1-1_arm64.deb ... 391s Unpacking libproj25:arm64 (9.3.1-1) ... 391s Selecting previously unselected package libtbbmalloc2:arm64. 391s Preparing to unpack .../099-libtbbmalloc2_2021.11.0-2ubuntu2_arm64.deb ... 391s Unpacking libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ... 391s Selecting previously unselected package libtbbbind-2-5:arm64. 391s Preparing to unpack .../100-libtbbbind-2-5_2021.11.0-2ubuntu2_arm64.deb ... 391s Unpacking libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 391s Selecting previously unselected package libtbb12:arm64. 391s Preparing to unpack .../101-libtbb12_2021.11.0-2ubuntu2_arm64.deb ... 391s Unpacking libtbb12:arm64 (2021.11.0-2ubuntu2) ... 391s Selecting previously unselected package libtcl8.6:arm64. 391s Preparing to unpack .../102-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 391s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 392s Selecting previously unselected package libtheora0:arm64. 392s Preparing to unpack .../103-libtheora0_1.1.1+dfsg.1-16.1_arm64.deb ... 392s Unpacking libtheora0:arm64 (1.1.1+dfsg.1-16.1) ... 392s Selecting previously unselected package libxft2:arm64. 392s Preparing to unpack .../104-libxft2_2.3.6-1_arm64.deb ... 392s Unpacking libxft2:arm64 (2.3.6-1) ... 392s Selecting previously unselected package x11-common. 392s Preparing to unpack .../105-x11-common_1%3a7.7+23ubuntu2_all.deb ... 392s Unpacking x11-common (1:7.7+23ubuntu2) ... 392s Selecting previously unselected package libxss1:arm64. 392s Preparing to unpack .../106-libxss1_1%3a1.2.3-1build2_arm64.deb ... 392s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 392s Selecting previously unselected package libtk8.6:arm64. 392s Preparing to unpack .../107-libtk8.6_8.6.14-1_arm64.deb ... 392s Unpacking libtk8.6:arm64 (8.6.14-1) ... 392s Selecting previously unselected package libvtk9.1:arm64. 392s Preparing to unpack .../108-libvtk9.1_9.1.0+really9.1.0+dfsg2-7build1_arm64.deb ... 392s Unpacking libvtk9.1:arm64 (9.1.0+really9.1.0+dfsg2-7build1) ... 393s Selecting previously unselected package liblammps0:arm64. 393s Preparing to unpack .../109-liblammps0_20240207+dfsg-1_arm64.deb ... 393s Unpacking liblammps0:arm64 (20240207+dfsg-1) ... 394s Selecting previously unselected package openmpi-common. 394s Preparing to unpack .../110-openmpi-common_4.1.6-5ubuntu1_all.deb ... 394s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 394s Selecting previously unselected package openmpi-bin. 394s Preparing to unpack .../111-openmpi-bin_4.1.6-5ubuntu1_arm64.deb ... 394s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 394s Selecting previously unselected package mpi-default-bin. 394s Preparing to unpack .../112-mpi-default-bin_1.15_arm64.deb ... 394s Unpacking mpi-default-bin (1.15) ... 394s Selecting previously unselected package lammps. 394s Preparing to unpack .../113-lammps_20240207+dfsg-1_arm64.deb ... 394s Unpacking lammps (20240207+dfsg-1) ... 394s Selecting previously unselected package autopkgtest-satdep. 394s Preparing to unpack .../114-1-autopkgtest-satdep.deb ... 394s Unpacking autopkgtest-satdep (0) ... 394s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 394s Setting up libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ... 394s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 394s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 394s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 394s Setting up libpciaccess0:arm64 (0.17-3) ... 394s Setting up libdouble-conversion3:arm64 (3.3.0-1) ... 394s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 394s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 394s Setting up libogg0:arm64 (1.3.5-3) ... 394s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 394s Setting up proj-data (9.3.1-1) ... 394s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 394s Setting up lammps-data (20240207+dfsg-1) ... 394s Setting up libxcb-render0:arm64 (1.15-1) ... 394s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 394s Setting up libglvnd0:arm64 (1.7.0-1) ... 394s Setting up libxcb-glx0:arm64 (1.15-1) ... 394s Setting up x11-common (1:7.7+23ubuntu2) ... 395s Setting up libdeflate0:arm64 (1.19-1) ... 395s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 395s Setting up libxcb-shm0:arm64 (1.15-1) ... 395s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 395s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 395s Setting up libaec0:arm64 (1.1.2-1) ... 395s Setting up libopengl0:arm64 (1.7.0-1) ... 395s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 395s Setting up gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 395s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 395s Setting up libxcb-present0:arm64 (1.15-1) ... 395s Setting up libblas3:arm64 (3.12.0-3) ... 395s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 395s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 395s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 395s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 395s Setting up libxcb-sync1:arm64 (1.15-1) ... 395s Setting up fonts-dejavu-mono (2.37-8) ... 395s Setting up libhwloc15:arm64 (2.10.0-1) ... 395s Setting up libmpc3:arm64 (1.3.1-1) ... 395s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 395s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 395s Setting up libjsoncpp25:arm64 (1.9.5-6) ... 395s Setting up fonts-dejavu-core (2.37-8) ... 395s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 395s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 395s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 395s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 395s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 395s Setting up libwebp7:arm64 (1.3.2-0.4) ... 395s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 395s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 395s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 395s Setting up libxshmfence1:arm64 (1.3-1build4) ... 395s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 395s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 395s Setting up libxcb-randr0:arm64 (1.15-1) ... 395s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 395s Setting up openmpi-common (4.1.6-5ubuntu1) ... 395s Setting up librdmacm1t64:arm64 (50.0-2) ... 395s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 395s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 395s Setting up libisl23:arm64 (0.26-3) ... 395s Setting up libc-dev-bin (2.39-0ubuntu6) ... 395s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 395s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 395s Setting up libpython3.12:arm64 (3.12.2-1) ... 395s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 395s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 395s Setting up libsz2:arm64 (1.1.2-1) ... 395s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 395s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 395s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 396s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 396s Setting up libfabric1:arm64 (1.17.0-3build1) ... 396s Setting up liblapack3:arm64 (3.12.0-3) ... 396s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 396s Setting up cpp-12 (12.3.0-15ubuntu1) ... 396s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 396s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 396s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 396s Setting up libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 396s Setting up libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 396s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 396s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 396s Setting up libc6-dev:arm64 (2.39-0ubuntu6) ... 396s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 396s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 396s Setting up libhsakmt1:arm64 (5.7.0-1) ... 396s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 396s Setting up libxft2:arm64 (2.3.6-1) ... 396s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 396s Setting up libglx0:arm64 (1.7.0-1) ... 396s Setting up libproj25:arm64 (9.3.1-1) ... 396s Setting up libpmix2:arm64 (5.0.1-4) ... 396s Setting up libtk8.6:arm64 (8.6.14-1) ... 396s Setting up libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 396s Setting up libtbb12:arm64 (2021.11.0-2ubuntu2) ... 396s Setting up libcairo2:arm64 (1.18.0-1) ... 396s Setting up libgl1:arm64 (1.7.0-1) ... 396s Setting up gcc-12 (12.3.0-15ubuntu1) ... 396s Setting up libglew2.2:arm64 (2.2.0-4) ... 396s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 396s Setting up libhsa-runtime64-1 (5.7.1-1) ... 396s Setting up libtheora0:arm64 (1.1.1+dfsg.1-16.1) ... 396s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 396s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 396s Setting up libamdhip64-5 (5.2.3-12) ... 396s Setting up libucx0:arm64 (1.16.0+ds-4) ... 396s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 396s Setting up libkim-api2:arm64 (2.3.0-1) ... 396s Setting up libvtk9.1:arm64 (9.1.0+really9.1.0+dfsg2-7build1) ... 396s Setting up libpnetcdf0d:arm64 (1.12.3-2) ... 396s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 396s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 396s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 396s Setting up mpi-default-bin (1.15) ... 396s Setting up liblammps0:arm64 (20240207+dfsg-1) ... 396s Setting up lammps (20240207+dfsg-1) ... 396s Setting up autopkgtest-satdep (0) ... 396s Processing triggers for man-db (2.12.0-3) ... 397s Processing triggers for libc-bin (2.39-0ubuntu6) ... 406s (Reading database ... 79527 files and directories currently installed.) 406s Removing autopkgtest-satdep (0) ... 407s autopkgtest [08:14:24]: test crack: [----------------------- 408s LAMMPS (7 Feb 2024 - Update 1) 408s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 408s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 408s using 1 OpenMP thread(s) per MPI task 408s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 408s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 408s 2 by 1 by 1 MPI processor grid 408s Created 8141 atoms 408s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 408s create_atoms CPU = 0.004 seconds 408s 302 atoms in group lower 408s 302 atoms in group upper 408s 604 atoms in group boundary 408s 7537 atoms in group mobile 408s 841 atoms in group leftupper 408s 841 atoms in group leftlower 408s Setting atom values ... 408s 841 settings made for type 408s Setting atom values ... 408s 841 settings made for type 408s Setting atom values ... 408s 302 settings made for type 408s Setting atom values ... 408s 302 settings made for type 408s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 408s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 408s Neighbor list info ... 408s update: every = 1 steps, delay = 5 steps, check = yes 408s max neighbors/atom: 2000, page size: 100000 408s master list distance cutoff = 2.8 408s ghost atom cutoff = 2.8 408s binsize = 1.4, bins = 80 56 1 408s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 408s (1) pair lj/cut, perpetual 408s attributes: half, newton on 408s pair build: half/bin/atomonly/newton 408s stencil: half/bin/2d 408s bin: standard 408s Setting up Verlet run ... 408s Unit style : lj 408s Current step : 0 408s Time step : 0.003 408s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 408s Step Temp E_pair E_mol TotEng Press Volume 408s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 408s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 409s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 410s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 411s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 411s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 412s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 412s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 413s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 414s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 414s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 415s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 415s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 416s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 417s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 417s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 418s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 419s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 419s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 420s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 421s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 421s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 422s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 423s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 423s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 424s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 424s Loop time of 16.1193 on 2 procs for 5000 steps with 8141 atoms 424s 424s Performance: 80400.619 tau/day, 310.188 timesteps/s, 2.525 Matom-step/s 424s 47.4% CPU use with 2 MPI tasks x 1 OpenMP threads 424s 424s MPI task timing breakdown: 424s Section | min time | avg time | max time |%varavg| %total 424s --------------------------------------------------------------- 424s Pair | 6.2581 | 6.3255 | 6.3929 | 2.7 | 39.24 424s Neigh | 0.26746 | 0.27179 | 0.27612 | 0.8 | 1.69 424s Comm | 7.3835 | 7.9805 | 8.5776 | 21.1 | 49.51 424s Output | 0.014291 | 0.014686 | 0.015081 | 0.3 | 0.09 424s Modify | 0.7779 | 0.78453 | 0.79116 | 0.7 | 4.87 424s Other | | 0.7423 | | | 4.60 424s 424s Nlocal: 4070.5 ave 4085 max 4056 min 424s Histogram: 1 0 0 0 0 0 0 0 0 1 424s Nghost: 207 ave 208 max 206 min 424s Histogram: 1 0 0 0 0 0 0 0 0 1 424s Neighs: 35700 ave 35927 max 35473 min 424s Histogram: 1 0 0 0 0 0 0 0 0 1 424s 424s Total # of neighbors = 71400 424s Ave neighs/atom = 8.7704213 424s Neighbor list builds = 106 424s Dangerous builds = 0 424s Total wall time: 0:00:16 424s LAMMPS (7 Feb 2024 - Update 1) 438s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 438s using 1 OpenMP thread(s) per MPI task 438s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 438s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 438s 1 by 1 by 1 MPI processor grid 438s Created 8141 atoms 438s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 438s create_atoms CPU = 0.004 seconds 438s 302 atoms in group lower 438s 302 atoms in group upper 438s 604 atoms in group boundary 438s 7537 atoms in group mobile 438s 841 atoms in group leftupper 438s 841 atoms in group leftlower 438s Setting atom values ... 438s 841 settings made for type 438s Setting atom values ... 438s 841 settings made for type 438s Setting atom values ... 438s 302 settings made for type 438s Setting atom values ... 438s 302 settings made for type 438s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 438s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 438s Neighbor list info ... 438s update: every = 1 steps, delay = 5 steps, check = yes 438s max neighbors/atom: 2000, page size: 100000 438s master list distance cutoff = 2.8 438s ghost atom cutoff = 2.8 438s binsize = 1.4, bins = 80 56 1 438s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 438s (1) pair lj/cut, perpetual 438s attributes: half, newton on 438s pair build: half/bin/atomonly/newton 438s stencil: half/bin/2d 438s bin: standard 438s Setting up Verlet run ... 438s Unit style : lj 438s Current step : 0 438s Time step : 0.003 438s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 438s Step Temp E_pair E_mol TotEng Press Volume 438s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 438s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 438s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 438s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 438s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 438s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 438s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 438s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 438s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 438s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 438s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 438s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 438s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 438s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 438s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 438s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 438s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 438s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 438s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 438s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 438s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 438s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 438s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 439s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 439s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 439s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 439s Loop time of 14.7356 on 1 procs for 5000 steps with 8141 atoms 439s 439s Performance: 87950.285 tau/day, 339.314 timesteps/s, 2.762 Matom-step/s 439s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 439s 439s MPI task timing breakdown: 439s Section | min time | avg time | max time |%varavg| %total 439s --------------------------------------------------------------- 439s Pair | 12.43 | 12.43 | 12.43 | 0.0 | 84.35 439s Neigh | 0.50003 | 0.50003 | 0.50003 | 0.0 | 3.39 439s Comm | 0.0098659 | 0.0098659 | 0.0098659 | 0.0 | 0.07 439s Output | 0.0035712 | 0.0035712 | 0.0035712 | 0.0 | 0.02 439s Modify | 1.4971 | 1.4971 | 1.4971 | 0.0 | 10.16 439s Other | | 0.295 | | | 2.00 439s 439s Nlocal: 8141 ave 8141 max 8141 min 439s Histogram: 1 0 0 0 0 0 0 0 0 0 439s Nghost: 0 ave 0 max 0 min 439s Histogram: 1 0 0 0 0 0 0 0 0 0 439s Neighs: 71389 ave 71389 max 71389 min 439s Histogram: 1 0 0 0 0 0 0 0 0 0 439s 439s Total # of neighbors = 71389 439s Ave neighs/atom = 8.7690701 439s Neighbor list builds = 100 439s Dangerous builds = 0 439s Total wall time: 0:00:14 439s run: OK 439s autopkgtest [08:14:56]: test crack: -----------------------] 440s crack PASS 440s autopkgtest [08:14:57]: test crack: - - - - - - - - - - results - - - - - - - - - - 440s autopkgtest [08:14:57]: test dipole: preparing testbed 443s Reading package lists... 443s Building dependency tree... 443s Reading state information... 444s Starting pkgProblemResolver with broken count: 0 444s Starting 2 pkgProblemResolver with broken count: 0 444s Done 446s The following NEW packages will be installed: 446s autopkgtest-satdep 446s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 446s Need to get 0 B/700 B of archives. 446s After this operation, 0 B of additional disk space will be used. 446s Get:1 /tmp/autopkgtest.yOdUk2/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 446s Selecting previously unselected package autopkgtest-satdep. 447s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79527 files and directories currently installed.) 447s Preparing to unpack .../2-autopkgtest-satdep.deb ... 447s Unpacking autopkgtest-satdep (0) ... 447s Setting up autopkgtest-satdep (0) ... 451s (Reading database ... 79527 files and directories currently installed.) 451s Removing autopkgtest-satdep (0) ... 452s autopkgtest [08:15:09]: test dipole: [----------------------- 453s LAMMPS (7 Feb 2024 - Update 1) 453s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 453s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 453s using 1 OpenMP thread(s) per MPI task 453s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 453s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 453s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 453s 2 by 1 by 1 MPI processor grid 453s Created 200 atoms 453s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 453s create_atoms CPU = 0.003 seconds 453s Setting atom values ... 453s 200 settings made for mass 453s Setting atom values ... 453s 200 settings made for dipole/random 453s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 453s Neighbor list info ... 453s update: every = 1 steps, delay = 0 steps, check = yes 453s max neighbors/atom: 2000, page size: 100000 453s master list distance cutoff = 2.8 453s ghost atom cutoff = 2.8 453s binsize = 1.4, bins = 13 13 2 453s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 453s (1) pair lj/cut/dipole/cut, perpetual 453s attributes: half, newton on 453s pair build: half/bin/atomonly/newton 453s stencil: half/bin/2d 453s bin: standard 453s Setting up Verlet run ... 453s Unit style : lj 453s Current step : 0 453s Time step : 0.005 453s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 453s Step Temp E_pair c_erot TotEng Press 453s 0 0 -2.0965715 0 -2.0965715 -2.4759659 453s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 453s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 453s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 453s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 453s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 453s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 454s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 454s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 454s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 454s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 454s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 454s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 455s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 455s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 455s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 455s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 455s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 455s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 455s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 456s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 456s Loop time of 3.044 on 2 procs for 10000 steps with 200 atoms 456s 456s Performance: 1419185.980 tau/day, 3285.153 timesteps/s, 657.031 katom-step/s 456s 38.9% CPU use with 2 MPI tasks x 1 OpenMP threads 456s 456s MPI task timing breakdown: 456s Section | min time | avg time | max time |%varavg| %total 456s --------------------------------------------------------------- 456s Pair | 0.61517 | 0.68583 | 0.75648 | 8.5 | 22.53 456s Neigh | 0.033699 | 0.036216 | 0.038733 | 1.3 | 1.19 456s Comm | 1.875 | 1.9513 | 2.0276 | 5.5 | 64.10 456s Output | 0.0036051 | 0.0038867 | 0.0041682 | 0.5 | 0.13 456s Modify | 0.113 | 0.11961 | 0.12623 | 1.9 | 3.93 456s Other | | 0.2471 | | | 8.12 456s 456s Nlocal: 100 ave 104 max 96 min 456s Histogram: 1 0 0 0 0 0 0 0 0 1 456s Nghost: 123.5 ave 124 max 123 min 456s Histogram: 1 0 0 0 0 0 0 0 0 1 456s Neighs: 820 ave 885 max 755 min 456s Histogram: 1 0 0 0 0 0 0 0 0 1 456s 456s Total # of neighbors = 1640 456s Ave neighs/atom = 8.2 456s Neighbor list builds = 697 456s Dangerous builds = 0 456s Total wall time: 0:00:03 456s LAMMPS (7 Feb 2024 - Update 1) 458s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 458s using 1 OpenMP thread(s) per MPI task 458s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 458s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 458s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 458s 1 by 1 by 1 MPI processor grid 458s Created 200 atoms 458s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 458s create_atoms CPU = 0.001 seconds 458s Setting atom values ... 458s 200 settings made for mass 458s Setting atom values ... 458s 200 settings made for dipole/random 458s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 458s Neighbor list info ... 458s update: every = 1 steps, delay = 0 steps, check = yes 458s max neighbors/atom: 2000, page size: 100000 458s master list distance cutoff = 2.8 458s ghost atom cutoff = 2.8 458s binsize = 1.4, bins = 13 13 2 458s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 458s (1) pair lj/cut/dipole/cut, perpetual 458s attributes: half, newton on 458s pair build: half/bin/atomonly/newton 458s stencil: half/bin/2d 458s bin: standard 458s Setting up Verlet run ... 458s Unit style : lj 458s Current step : 0 458s Time step : 0.005 458s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 458s Step Temp E_pair c_erot TotEng Press 458s 0 0 -2.0965715 0 -2.0965715 -2.4759659 458s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 458s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 458s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 458s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 458s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 458s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 458s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 458s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 458s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 458s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 458s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 458s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 458s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 458s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 458s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 458s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 458s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 458s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 458s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 458s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 458s Loop time of 1.6673 on 1 procs for 10000 steps with 200 atoms 458s 458s Performance: 2591020.306 tau/day, 5997.732 timesteps/s, 1.200 Matom-step/s 458s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 458s 458s MPI task timing breakdown: 458s Section | min time | avg time | max time |%varavg| %total 458s --------------------------------------------------------------- 458s Pair | 1.2892 | 1.2892 | 1.2892 | 0.0 | 77.32 458s Neigh | 0.065852 | 0.065852 | 0.065852 | 0.0 | 3.95 458s Comm | 0.067654 | 0.067654 | 0.067654 | 0.0 | 4.06 458s Output | 0.00068077 | 0.00068077 | 0.00068077 | 0.0 | 0.04 458s Modify | 0.21408 | 0.21408 | 0.21408 | 0.0 | 12.84 458s Other | | 0.02987 | | | 1.79 458s 458s Nlocal: 200 ave 200 max 200 min 458s Histogram: 1 0 0 0 0 0 0 0 0 0 458s Nghost: 155 ave 155 max 155 min 458s Histogram: 1 0 0 0 0 0 0 0 0 0 458s Neighs: 1664 ave 1664 max 1664 min 458s Histogram: 1 0 0 0 0 0 0 0 0 0 458s 458s Total # of neighbors = 1664 458s Ave neighs/atom = 8.32 458s Neighbor list builds = 697 458s Dangerous builds = 0 458s Total wall time: 0:00:01 458s run: OK 458s autopkgtest [08:15:15]: test dipole: -----------------------] 459s autopkgtest [08:15:16]: test dipole: - - - - - - - - - - results - - - - - - - - - - 459s dipole PASS 459s autopkgtest [08:15:16]: test ellipse: preparing testbed 463s Reading package lists... 464s Building dependency tree... 464s Reading state information... 464s Starting pkgProblemResolver with broken count: 0 464s Starting 2 pkgProblemResolver with broken count: 0 464s Done 466s The following NEW packages will be installed: 466s autopkgtest-satdep 466s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 466s Need to get 0 B/704 B of archives. 466s After this operation, 0 B of additional disk space will be used. 466s Get:1 /tmp/autopkgtest.yOdUk2/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 467s Selecting previously unselected package autopkgtest-satdep. 467s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79527 files and directories currently installed.) 467s Preparing to unpack .../3-autopkgtest-satdep.deb ... 467s Unpacking autopkgtest-satdep (0) ... 467s Setting up autopkgtest-satdep (0) ... 471s (Reading database ... 79527 files and directories currently installed.) 471s Removing autopkgtest-satdep (0) ... 472s autopkgtest [08:15:29]: test ellipse: [----------------------- 472s LAMMPS (7 Feb 2024 - Update 1) 472s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 472s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 472s using 1 OpenMP thread(s) per MPI task 472s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 472s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 472s 2 by 1 by 1 MPI processor grid 472s Created 400 atoms 472s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 472s create_atoms CPU = 0.003 seconds 472s Setting atom values ... 472s 29 settings made for type/fraction 473s Setting atom values ... 473s 371 settings made for mass 473s Setting atom values ... 473s 29 settings made for mass 473s Setting atom values ... 473s 371 settings made for shape 473s Setting atom values ... 473s 29 settings made for shape 473s Setting atom values ... 473s 400 settings made for quat/random 473s 371 atoms in group spheroid 473s 473s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 473s 473s Your simulation uses code contributions which should be cited: 473s - pair gayberne command: doi:10.1063/1.3058435 473s The log file lists these citations in BibTeX format. 473s 473s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 473s 473s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 473s Neighbor list info ... 473s update: every = 1 steps, delay = 0 steps, check = yes 473s max neighbors/atom: 2000, page size: 100000 473s master list distance cutoff = 4.8 473s ghost atom cutoff = 4.8 473s binsize = 2.4, bins = 59 59 3 473s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 473s (1) pair gayberne, perpetual 473s attributes: half, newton on 473s pair build: half/bin/atomonly/newton 473s stencil: half/bin/2d 473s bin: standard 473s Setting up Verlet run ... 473s Unit style : lj 473s Current step : 0 473s Time step : 0.002 473s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 473s Step c_rot E_pair TotEng Press Volume 473s 0 2.3158404 0 2.394 0.04788 20000 473s 100 1.7101139 0 1.7678302 0.034413192 20548.286 473s 200 2.3115592 0 2.3895743 0.04649702 20556.796 473s 300 1.831333 0 1.8931405 0.041256922 18354.646 473s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 473s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 473s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 473s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 473s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 473s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 473s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 473s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 474s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 474s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 474s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 474s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 474s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 474s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 474s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 475s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 475s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 475s Loop time of 2.15562 on 2 procs for 2000 steps with 400 atoms 475s 475s Performance: 160325.459 tau/day, 927.809 timesteps/s, 371.124 katom-step/s 475s 42.2% CPU use with 2 MPI tasks x 1 OpenMP threads 475s 475s MPI task timing breakdown: 475s Section | min time | avg time | max time |%varavg| %total 475s --------------------------------------------------------------- 475s Pair | 0.46422 | 0.52023 | 0.57624 | 7.8 | 24.13 475s Neigh | 0.02414 | 0.024535 | 0.024929 | 0.3 | 1.14 475s Comm | 0.92645 | 0.9827 | 1.0389 | 5.7 | 45.59 475s Output | 0.05788 | 0.05829 | 0.0587 | 0.2 | 2.70 475s Modify | 0.44724 | 0.44791 | 0.44859 | 0.1 | 20.78 475s Other | | 0.1219 | | | 5.66 475s 475s Nlocal: 200 ave 211 max 189 min 475s Histogram: 1 0 0 0 0 0 0 0 0 1 475s Nghost: 215 ave 217 max 213 min 475s Histogram: 1 0 0 0 0 0 0 0 0 1 475s Neighs: 1561 ave 1651 max 1471 min 475s Histogram: 1 0 0 0 0 0 0 0 0 1 475s 475s Total # of neighbors = 3122 475s Ave neighs/atom = 7.805 475s Neighbor list builds = 346 475s Dangerous builds = 0 475s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 475s Setting up Verlet run ... 475s Unit style : lj 475s Current step : 2000 475s Time step : 0.002 475s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 475s Step c_rot E_pair TotEng Press Volume 475s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 475s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 475s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 475s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 475s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 475s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 475s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 475s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 476s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 476s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 476s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 476s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 476s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 476s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 476s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 476s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 476s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 476s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 477s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 477s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 477s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 477s Loop time of 2.07108 on 2 procs for 2000 steps with 400 atoms 477s 477s Performance: 166869.702 tau/day, 965.681 timesteps/s, 386.272 katom-step/s 477s 44.8% CPU use with 2 MPI tasks x 1 OpenMP threads 477s 477s MPI task timing breakdown: 477s Section | min time | avg time | max time |%varavg| %total 477s --------------------------------------------------------------- 477s Pair | 0.67561 | 0.6767 | 0.67778 | 0.1 | 32.67 477s Neigh | 0.005692 | 0.0063784 | 0.0070648 | 0.9 | 0.31 477s Comm | 1.0815 | 1.0883 | 1.0951 | 0.7 | 52.55 477s Output | 0.061397 | 0.062276 | 0.063155 | 0.4 | 3.01 477s Modify | 0.11059 | 0.12189 | 0.1332 | 3.2 | 5.89 477s Other | | 0.1155 | | | 5.58 477s 477s Nlocal: 200 ave 227 max 173 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s Nghost: 211 ave 219 max 203 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s Neighs: 1650.5 ave 1950 max 1351 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s 477s Total # of neighbors = 3301 477s Ave neighs/atom = 8.2525 477s Neighbor list builds = 49 477s Dangerous builds = 0 477s Total wall time: 0:00:04 477s LAMMPS (7 Feb 2024 - Update 1) 479s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 479s using 1 OpenMP thread(s) per MPI task 479s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 479s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 479s 1 by 1 by 1 MPI processor grid 479s Created 400 atoms 479s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 479s create_atoms CPU = 0.001 seconds 479s Setting atom values ... 479s 29 settings made for type/fraction 479s Setting atom values ... 479s 371 settings made for mass 479s Setting atom values ... 479s 29 settings made for mass 479s Setting atom values ... 479s 371 settings made for shape 479s Setting atom values ... 479s 29 settings made for shape 479s Setting atom values ... 479s 400 settings made for quat/random 479s 371 atoms in group spheroid 479s 479s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 479s 479s Your simulation uses code contributions which should be cited: 479s - pair gayberne command: doi:10.1063/1.3058435 479s The log file lists these citations in BibTeX format. 479s 479s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 479s 479s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 479s Neighbor list info ... 479s update: every = 1 steps, delay = 0 steps, check = yes 479s max neighbors/atom: 2000, page size: 100000 479s master list distance cutoff = 4.8 479s ghost atom cutoff = 4.8 479s binsize = 2.4, bins = 59 59 3 479s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 479s (1) pair gayberne, perpetual 479s attributes: half, newton on 479s pair build: half/bin/atomonly/newton 479s stencil: half/bin/2d 479s bin: standard 479s Setting up Verlet run ... 479s Unit style : lj 479s Current step : 0 479s Time step : 0.002 479s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 479s Step c_rot E_pair TotEng Press Volume 479s 0 2.3158404 0 2.394 0.04788 20000 479s 100 1.7101139 0 1.7678302 0.034413192 20548.286 479s 200 2.3115592 0 2.3895743 0.04649702 20556.796 479s 300 1.831333 0 1.8931405 0.041256922 18354.646 479s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 479s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 479s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 479s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 479s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 479s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 479s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 479s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 479s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 479s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 479s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 479s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 479s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 479s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 479s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 479s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 479s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 479s Loop time of 1.51977 on 1 procs for 2000 steps with 400 atoms 479s 479s Performance: 227403.256 tau/day, 1315.991 timesteps/s, 526.396 katom-step/s 479s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 479s 479s MPI task timing breakdown: 479s Section | min time | avg time | max time |%varavg| %total 479s --------------------------------------------------------------- 479s Pair | 1.022 | 1.022 | 1.022 | 0.0 | 67.25 480s Neigh | 0.045307 | 0.045307 | 0.045307 | 0.0 | 2.98 480s Comm | 0.027526 | 0.027526 | 0.027526 | 0.0 | 1.81 480s Output | 0.038746 | 0.038746 | 0.038746 | 0.0 | 2.55 480s Modify | 0.37294 | 0.37294 | 0.37294 | 0.0 | 24.54 480s Other | | 0.0132 | | | 0.87 480s 480s Nlocal: 400 ave 400 max 400 min 480s Histogram: 1 0 0 0 0 0 0 0 0 0 480s Nghost: 276 ave 276 max 276 min 480s Histogram: 1 0 0 0 0 0 0 0 0 0 480s Neighs: 3122 ave 3122 max 3122 min 480s Histogram: 1 0 0 0 0 0 0 0 0 0 480s 480s Total # of neighbors = 3122 480s Ave neighs/atom = 7.805 480s Neighbor list builds = 346 480s Dangerous builds = 0 480s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 480s Setting up Verlet run ... 480s Unit style : lj 480s Current step : 2000 480s Time step : 0.002 480s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 480s Step c_rot E_pair TotEng Press Volume 480s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 480s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 480s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 480s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 480s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 480s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 480s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 480s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 480s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 480s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 480s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 480s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 480s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 480s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 480s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 480s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 480s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 480s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 480s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 480s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 480s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 480s Loop time of 1.635 on 1 procs for 2000 steps with 400 atoms 480s 480s Performance: 211375.682 tau/day, 1223.239 timesteps/s, 489.296 katom-step/s 480s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 480s 480s MPI task timing breakdown: 480s Section | min time | avg time | max time |%varavg| %total 480s --------------------------------------------------------------- 480s Pair | 1.3132 | 1.3132 | 1.3132 | 0.0 | 80.32 480s Neigh | 0.012387 | 0.012387 | 0.012387 | 0.0 | 0.76 480s Comm | 0.029409 | 0.029409 | 0.029409 | 0.0 | 1.80 480s Output | 0.038712 | 0.038712 | 0.038712 | 0.0 | 2.37 480s Modify | 0.23052 | 0.23052 | 0.23052 | 0.0 | 14.10 480s Other | | 0.01074 | | | 0.66 480s 480s Nlocal: 400 ave 400 max 400 min 480s Histogram: 1 0 0 0 0 0 0 0 0 0 480s Nghost: 284 ave 284 max 284 min 480s Histogram: 1 0 0 0 0 0 0 0 0 0 480s Neighs: 3287 ave 3287 max 3287 min 480s Histogram: 1 0 0 0 0 0 0 0 0 0 480s 480s Total # of neighbors = 3287 480s Ave neighs/atom = 8.2175 480s Neighbor list builds = 51 480s Dangerous builds = 0 480s Total wall time: 0:00:03 481s LAMMPS (7 Feb 2024 - Update 1) 481s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 481s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 481s using 1 OpenMP thread(s) per MPI task 481s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 481s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 481s 2 by 1 by 1 MPI processor grid 481s Created 400 atoms 481s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 481s create_atoms CPU = 0.003 seconds 481s Setting atom values ... 481s 29 settings made for type/fraction 481s Setting atom values ... 481s 371 settings made for mass 481s Setting atom values ... 481s 29 settings made for mass 481s Setting atom values ... 481s 371 settings made for shape 481s Setting atom values ... 481s 29 settings made for shape 481s Setting atom values ... 481s 400 settings made for quat/random 481s 371 atoms in group spheroid 481s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 481s Neighbor list info ... 481s update: every = 1 steps, delay = 0 steps, check = yes 481s max neighbors/atom: 2000, page size: 100000 481s master list distance cutoff = 4.8 481s ghost atom cutoff = 4.8 481s binsize = 2.4, bins = 59 59 3 481s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 481s (1) pair resquared, perpetual 481s attributes: half, newton on 481s pair build: half/bin/atomonly/newton 481s stencil: half/bin/2d 481s bin: standard 481s Setting up Verlet run ... 481s Unit style : lj 481s Current step : 0 481s Time step : 0.002 481s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 481s Step c_rot E_pair TotEng Press Volume 481s 0 2.3158404 0 2.394 0.04788 20000 481s 100 1.7101139 0 1.7678302 0.034413192 20548.286 481s 200 2.3115592 0 2.3895743 0.04649702 20556.796 481s 300 1.831333 0 1.8931405 0.041256922 18354.646 481s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 481s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 481s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 481s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 482s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 482s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 482s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 483s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 483s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 483s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 483s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 484s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 484s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 484s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 484s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 484s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 485s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 485s Loop time of 4.01457 on 2 procs for 2000 steps with 400 atoms 485s 485s Performance: 86086.465 tau/day, 498.186 timesteps/s, 199.274 katom-step/s 485s 45.6% CPU use with 2 MPI tasks x 1 OpenMP threads 485s 485s MPI task timing breakdown: 485s Section | min time | avg time | max time |%varavg| %total 485s --------------------------------------------------------------- 485s Pair | 1.4207 | 1.4564 | 1.4921 | 3.0 | 36.28 485s Neigh | 0.026284 | 0.026585 | 0.026886 | 0.2 | 0.66 485s Comm | 1.8498 | 1.8856 | 1.9215 | 2.6 | 46.97 485s Output | 0.058948 | 0.059397 | 0.059846 | 0.2 | 1.48 485s Modify | 0.45883 | 0.45977 | 0.4607 | 0.1 | 11.45 485s Other | | 0.1268 | | | 3.16 485s 485s Nlocal: 200 ave 210 max 190 min 485s Histogram: 1 0 0 0 0 0 0 0 0 1 485s Nghost: 164 ave 168 max 160 min 485s Histogram: 1 0 0 0 0 0 0 0 0 1 485s Neighs: 910 ave 958 max 862 min 485s Histogram: 1 0 0 0 0 0 0 0 0 1 485s 485s Total # of neighbors = 1820 485s Ave neighs/atom = 4.55 485s Neighbor list builds = 420 485s Dangerous builds = 0 485s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 485s Setting up Verlet run ... 485s Unit style : lj 485s Current step : 2000 485s Time step : 0.002 485s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 485s Step c_rot E_pair TotEng Press Volume 485s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 485s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 485s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 486s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 486s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 486s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 487s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 487s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 487s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 488s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 488s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 488s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 488s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 489s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 489s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 489s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 490s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 490s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 490s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 491s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 491s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 491s Loop time of 6.23848 on 2 procs for 2000 steps with 400 atoms 491s 491s Performance: 55398.078 tau/day, 320.591 timesteps/s, 128.236 katom-step/s 491s 46.3% CPU use with 2 MPI tasks x 1 OpenMP threads 491s 491s MPI task timing breakdown: 491s Section | min time | avg time | max time |%varavg| %total 491s --------------------------------------------------------------- 491s Pair | 2.5628 | 2.68 | 2.7971 | 7.2 | 42.96 491s Neigh | 0.0045614 | 0.0048425 | 0.0051236 | 0.4 | 0.08 491s Comm | 3.1217 | 3.2431 | 3.3644 | 6.7 | 51.98 491s Output | 0.060337 | 0.061433 | 0.062529 | 0.4 | 0.98 491s Modify | 0.12227 | 0.12739 | 0.13251 | 1.4 | 2.04 491s Other | | 0.1218 | | | 1.95 491s 491s Nlocal: 200 ave 212 max 188 min 491s Histogram: 1 0 0 0 0 0 0 0 0 1 491s Nghost: 171.5 ave 173 max 170 min 491s Histogram: 1 0 0 0 0 0 0 0 0 1 491s Neighs: 880.5 ave 946 max 815 min 491s Histogram: 1 0 0 0 0 0 0 0 0 1 491s 491s Total # of neighbors = 1761 491s Ave neighs/atom = 4.4025 491s Neighbor list builds = 49 491s Dangerous builds = 0 491s Total wall time: 0:00:10 491s LAMMPS (7 Feb 2024 - Update 1) 495s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 495s using 1 OpenMP thread(s) per MPI task 495s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 495s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 495s 1 by 1 by 1 MPI processor grid 495s Created 400 atoms 495s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 495s create_atoms CPU = 0.001 seconds 495s Setting atom values ... 495s 29 settings made for type/fraction 495s Setting atom values ... 495s 371 settings made for mass 495s Setting atom values ... 495s 29 settings made for mass 495s Setting atom values ... 495s 371 settings made for shape 495s Setting atom values ... 495s 29 settings made for shape 495s Setting atom values ... 495s 400 settings made for quat/random 495s 371 atoms in group spheroid 495s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 495s Neighbor list info ... 495s update: every = 1 steps, delay = 0 steps, check = yes 495s max neighbors/atom: 2000, page size: 100000 495s master list distance cutoff = 4.8 495s ghost atom cutoff = 4.8 495s binsize = 2.4, bins = 59 59 3 495s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 495s (1) pair resquared, perpetual 495s attributes: half, newton on 495s pair build: half/bin/atomonly/newton 495s stencil: half/bin/2d 495s bin: standard 495s Setting up Verlet run ... 495s Unit style : lj 495s Current step : 0 495s Time step : 0.002 495s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 495s Step c_rot E_pair TotEng Press Volume 495s 0 2.3158404 0 2.394 0.04788 20000 495s 100 1.7101139 0 1.7678302 0.034413192 20548.286 495s 200 2.3115592 0 2.3895743 0.04649702 20556.796 495s 300 1.831333 0 1.8931405 0.041256922 18354.646 495s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 495s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 495s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 495s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 495s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 495s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 495s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 495s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 495s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 495s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 495s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 495s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 495s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 495s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 495s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 495s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 495s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 495s Loop time of 3.37432 on 1 procs for 2000 steps with 400 atoms 495s 495s Performance: 102420.484 tau/day, 592.711 timesteps/s, 237.084 katom-step/s 495s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 495s 495s MPI task timing breakdown: 495s Section | min time | avg time | max time |%varavg| %total 495s --------------------------------------------------------------- 495s Pair | 2.8676 | 2.8676 | 2.8676 | 0.0 | 84.98 495s Neigh | 0.04809 | 0.04809 | 0.04809 | 0.0 | 1.43 495s Comm | 0.022651 | 0.022651 | 0.022651 | 0.0 | 0.67 495s Output | 0.038624 | 0.038624 | 0.038624 | 0.0 | 1.14 495s Modify | 0.38301 | 0.38301 | 0.38301 | 0.0 | 11.35 500s Other | | 0.01435 | | | 0.43 500s 500s Nlocal: 400 ave 400 max 400 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s Nghost: 206 ave 206 max 206 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s Neighs: 1820 ave 1820 max 1820 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s 500s Total # of neighbors = 1820 500s Ave neighs/atom = 4.55 500s Neighbor list builds = 420 500s Dangerous builds = 0 500s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 500s Setting up Verlet run ... 500s Unit style : lj 500s Current step : 2000 500s Time step : 0.002 500s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 500s Step c_rot E_pair TotEng Press Volume 500s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 500s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 500s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 500s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 500s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 500s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 500s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 500s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 500s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 500s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 500s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 500s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 500s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 500s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 500s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 500s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 500s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 500s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 500s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 500s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 500s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 500s Loop time of 5.5571 on 1 procs for 2000 steps with 400 atoms 500s 500s Performance: 62190.761 tau/day, 359.900 timesteps/s, 143.960 katom-step/s 500s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 500s 500s MPI task timing breakdown: 500s Section | min time | avg time | max time |%varavg| %total 500s --------------------------------------------------------------- 500s Pair | 5.2311 | 5.2311 | 5.2311 | 0.0 | 94.13 500s Neigh | 0.0088845 | 0.0088845 | 0.0088845 | 0.0 | 0.16 500s Comm | 0.0267 | 0.0267 | 0.0267 | 0.0 | 0.48 500s Output | 0.038701 | 0.038701 | 0.038701 | 0.0 | 0.70 500s Modify | 0.2399 | 0.2399 | 0.2399 | 0.0 | 4.32 500s Other | | 0.01185 | | | 0.21 500s 500s Nlocal: 400 ave 400 max 400 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s Nghost: 215 ave 215 max 215 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s Neighs: 1761 ave 1761 max 1761 min 500s Histogram: 1 0 0 0 0 0 0 0 0 0 500s 500s Total # of neighbors = 1761 500s Ave neighs/atom = 4.4025 500s Neighbor list builds = 49 500s Dangerous builds = 0 500s Total wall time: 0:00:08 500s run: OK 501s autopkgtest [08:15:58]: test ellipse: -----------------------] 501s autopkgtest [08:15:58]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 501s ellipse PASS 502s autopkgtest [08:15:59]: test flow: preparing testbed 503s Reading package lists... 504s Building dependency tree... 504s Reading state information... 505s Starting pkgProblemResolver with broken count: 0 505s Starting 2 pkgProblemResolver with broken count: 0 505s Done 506s The following NEW packages will be installed: 506s autopkgtest-satdep 506s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 506s Need to get 0 B/708 B of archives. 506s After this operation, 0 B of additional disk space will be used. 506s Get:1 /tmp/autopkgtest.yOdUk2/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 507s Selecting previously unselected package autopkgtest-satdep. 507s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79527 files and directories currently installed.) 507s Preparing to unpack .../4-autopkgtest-satdep.deb ... 507s Unpacking autopkgtest-satdep (0) ... 507s Setting up autopkgtest-satdep (0) ... 512s (Reading database ... 79527 files and directories currently installed.) 512s Removing autopkgtest-satdep (0) ... 512s autopkgtest [08:16:09]: test flow: [----------------------- 513s LAMMPS (7 Feb 2024 - Update 1) 513s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 513s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 513s using 1 OpenMP thread(s) per MPI task 513s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 513s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 513s 2 by 1 by 1 MPI processor grid 513s Created 420 atoms 513s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 513s create_atoms CPU = 0.002 seconds 513s 60 atoms in group lower 513s 60 atoms in group upper 513s 120 atoms in group boundary 513s 300 atoms in group flow 513s Setting atom values ... 513s 60 settings made for type 513s Setting atom values ... 513s 60 settings made for type 513s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 513s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 513s Neighbor list info ... 513s update: every = 1 steps, delay = 5 steps, check = yes 513s max neighbors/atom: 2000, page size: 100000 513s master list distance cutoff = 1.42246 513s ghost atom cutoff = 1.42246 513s binsize = 0.71123, bins = 37 32 1 513s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 513s (1) pair lj/cut, perpetual 513s attributes: half, newton on 513s pair build: half/bin/atomonly/newton 513s stencil: half/bin/2d 513s bin: standard 513s Setting up Verlet run ... 513s Unit style : lj 513s Current step : 0 513s Time step : 0.003 513s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 513s Step Temp E_pair E_mol TotEng Press Volume 513s 0 1 0 0 0.71190476 0.52314537 571.54286 513s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 513s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 513s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 513s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 513s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 514s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 514s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 514s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 514s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 514s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 514s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 514s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 514s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 514s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 514s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 514s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 514s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 514s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 514s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 515s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 515s Loop time of 1.4564 on 2 procs for 10000 steps with 420 atoms 515s 515s Performance: 1779734.224 tau/day, 6866.259 timesteps/s, 2.884 Matom-step/s 515s 30.2% CPU use with 2 MPI tasks x 1 OpenMP threads 515s 515s MPI task timing breakdown: 515s Section | min time | avg time | max time |%varavg| %total 515s --------------------------------------------------------------- 515s Pair | 0.11651 | 0.1166 | 0.11668 | 0.0 | 8.01 515s Neigh | 0.048493 | 0.048993 | 0.049494 | 0.2 | 3.36 515s Comm | 1.0204 | 1.0204 | 1.0204 | 0.0 | 70.06 515s Output | 0.0035778 | 0.0038079 | 0.0040379 | 0.4 | 0.26 515s Modify | 0.089649 | 0.090651 | 0.091653 | 0.3 | 6.22 515s Other | | 0.176 | | | 12.08 515s 515s Nlocal: 210 ave 214 max 206 min 515s Histogram: 1 0 0 0 0 0 0 0 0 1 515s Nghost: 51 ave 52 max 50 min 515s Histogram: 1 0 0 0 0 0 0 0 0 1 515s Neighs: 472 ave 494 max 450 min 515s Histogram: 1 0 0 0 0 0 0 0 0 1 515s 515s Total # of neighbors = 944 515s Ave neighs/atom = 2.247619 515s Neighbor list builds = 994 515s Dangerous builds = 0 515s Total wall time: 0:00:01 515s LAMMPS (7 Feb 2024 - Update 1) 515s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 515s using 1 OpenMP thread(s) per MPI task 515s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 515s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 515s 1 by 1 by 1 MPI processor grid 515s Created 420 atoms 515s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 515s create_atoms CPU = 0.001 seconds 515s 60 atoms in group lower 515s 60 atoms in group upper 515s 120 atoms in group boundary 515s 300 atoms in group flow 515s Setting atom values ... 515s 60 settings made for type 515s Setting atom values ... 515s 60 settings made for type 515s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 515s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 515s Neighbor list info ... 515s update: every = 1 steps, delay = 5 steps, check = yes 515s max neighbors/atom: 2000, page size: 100000 515s master list distance cutoff = 1.42246 515s ghost atom cutoff = 1.42246 515s binsize = 0.71123, bins = 37 32 1 515s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 515s (1) pair lj/cut, perpetual 515s attributes: half, newton on 515s pair build: half/bin/atomonly/newton 515s stencil: half/bin/2d 515s bin: standard 515s Setting up Verlet run ... 515s Unit style : lj 515s Current step : 0 515s Time step : 0.003 515s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 515s Step Temp E_pair E_mol TotEng Press Volume 515s 0 1 0 0 0.71190476 0.52314537 571.54286 515s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 515s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 515s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 515s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 515s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 515s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 515s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 515s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 515s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 515s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 515s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 515s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 515s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 515s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 515s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 515s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 515s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 515s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 515s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 515s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 515s Loop time of 0.507647 on 1 procs for 10000 steps with 420 atoms 515s 515s Performance: 5105913.649 tau/day, 19698.741 timesteps/s, 8.273 Matom-step/s 515s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 515s 515s MPI task timing breakdown: 515s Section | min time | avg time | max time |%varavg| %total 515s --------------------------------------------------------------- 515s Pair | 0.20569 | 0.20569 | 0.20569 | 0.0 | 40.52 515s Neigh | 0.086695 | 0.086695 | 0.086695 | 0.0 | 17.08 515s Comm | 0.013809 | 0.013809 | 0.013809 | 0.0 | 2.72 515s Output | 0.00071602 | 0.00071602 | 0.00071602 | 0.0 | 0.14 515s Modify | 0.15703 | 0.15703 | 0.15703 | 0.0 | 30.93 515s Other | | 0.04371 | | | 8.61 515s 515s Nlocal: 420 ave 420 max 420 min 515s Histogram: 1 0 0 0 0 0 0 0 0 0 515s Nghost: 50 ave 50 max 50 min 515s Histogram: 1 0 0 0 0 0 0 0 0 0 515s Neighs: 946 ave 946 max 946 min 515s Histogram: 1 0 0 0 0 0 0 0 0 0 515s 515s Total # of neighbors = 946 515s Ave neighs/atom = 2.252381 515s Neighbor list builds = 979 515s Dangerous builds = 0 515s Total wall time: 0:00:00 516s LAMMPS (7 Feb 2024 - Update 1) 516s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 516s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 516s using 1 OpenMP thread(s) per MPI task 516s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 516s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 516s 2 by 1 by 1 MPI processor grid 516s Created 420 atoms 516s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 516s create_atoms CPU = 0.002 seconds 516s 60 atoms in group lower 516s 60 atoms in group upper 516s 120 atoms in group boundary 516s 300 atoms in group flow 516s Setting atom values ... 516s 60 settings made for type 516s Setting atom values ... 516s 60 settings made for type 516s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 516s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 516s Neighbor list info ... 516s update: every = 1 steps, delay = 5 steps, check = yes 516s max neighbors/atom: 2000, page size: 100000 516s master list distance cutoff = 1.42246 516s ghost atom cutoff = 1.42246 516s binsize = 0.71123, bins = 37 32 1 516s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 516s (1) pair lj/cut, perpetual 516s attributes: half, newton on 516s pair build: half/bin/atomonly/newton 516s stencil: half/bin/2d 516s bin: standard 516s Setting up Verlet run ... 516s Unit style : lj 516s Current step : 0 516s Time step : 0.003 516s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 516s Step Temp E_pair E_mol TotEng Press Volume 516s 0 1 0 0 0.71190476 0.52314537 571.54286 516s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 516s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 516s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 516s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 516s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 516s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 516s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 516s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 517s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 517s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 517s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 517s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 517s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 517s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 517s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 517s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 517s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 517s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 517s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 517s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 517s Loop time of 1.65669 on 2 procs for 10000 steps with 420 atoms 517s 517s Performance: 1564564.758 tau/day, 6036.129 timesteps/s, 2.535 Matom-step/s 517s 31.8% CPU use with 2 MPI tasks x 1 OpenMP threads 517s 517s MPI task timing breakdown: 517s Section | min time | avg time | max time |%varavg| %total 517s --------------------------------------------------------------- 517s Pair | 0.13121 | 0.13142 | 0.13162 | 0.1 | 7.93 517s Neigh | 0.028103 | 0.028178 | 0.028253 | 0.0 | 1.70 517s Comm | 0.96412 | 0.96507 | 0.96601 | 0.1 | 58.25 517s Output | 0.0034624 | 0.0035423 | 0.0036222 | 0.1 | 0.21 517s Modify | 0.3322 | 0.33275 | 0.33331 | 0.1 | 20.09 517s Other | | 0.1957 | | | 11.81 517s 517s Nlocal: 210 ave 211 max 209 min 517s Histogram: 1 0 0 0 0 0 0 0 0 1 517s Nghost: 50 ave 51 max 49 min 517s Histogram: 1 0 0 0 0 0 0 0 0 1 517s Neighs: 563.5 ave 569 max 558 min 517s Histogram: 1 0 0 0 0 0 0 0 0 1 517s 517s Total # of neighbors = 1127 517s Ave neighs/atom = 2.6833333 517s Neighbor list builds = 560 517s Dangerous builds = 0 517s Total wall time: 0:00:01 518s LAMMPS (7 Feb 2024 - Update 1) 518s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 518s using 1 OpenMP thread(s) per MPI task 518s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 518s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 518s 1 by 1 by 1 MPI processor grid 518s Created 420 atoms 518s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 518s create_atoms CPU = 0.001 seconds 518s 60 atoms in group lower 518s 60 atoms in group upper 518s 120 atoms in group boundary 518s 300 atoms in group flow 518s Setting atom values ... 518s 60 settings made for type 518s Setting atom values ... 518s 60 settings made for type 518s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 518s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 518s Neighbor list info ... 518s update: every = 1 steps, delay = 5 steps, check = yes 518s max neighbors/atom: 2000, page size: 100000 518s master list distance cutoff = 1.42246 518s ghost atom cutoff = 1.42246 518s binsize = 0.71123, bins = 37 32 1 518s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 518s (1) pair lj/cut, perpetual 518s attributes: half, newton on 518s pair build: half/bin/atomonly/newton 518s stencil: half/bin/2d 518s bin: standard 518s Setting up Verlet run ... 518s Unit style : lj 518s Current step : 0 518s Time step : 0.003 518s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 518s Step Temp E_pair E_mol TotEng Press Volume 518s 0 1 0 0 0.71190476 0.52314537 571.54286 518s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 518s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 518s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 518s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 518s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 518s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 518s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 518s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 518s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 518s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 518s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 518s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 518s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 518s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 518s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 518s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 518s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 518s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 518s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 518s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 518s Loop time of 0.578988 on 1 procs for 10000 steps with 420 atoms 518s 518s Performance: 4476773.721 tau/day, 17271.504 timesteps/s, 7.254 Matom-step/s 518s 98.4% CPU use with 1 MPI tasks x 1 OpenMP threads 518s 518s MPI task timing breakdown: 518s Section | min time | avg time | max time |%varavg| %total 518s --------------------------------------------------------------- 518s Pair | 0.22502 | 0.22502 | 0.22502 | 0.0 | 38.86 518s Neigh | 0.051452 | 0.051452 | 0.051452 | 0.0 | 8.89 518s Comm | 0.012169 | 0.012169 | 0.012169 | 0.0 | 2.10 518s Output | 0.00074575 | 0.00074575 | 0.00074575 | 0.0 | 0.13 518s Modify | 0.25123 | 0.25123 | 0.25123 | 0.0 | 43.39 518s Other | | 0.03838 | | | 6.63 518s 518s Nlocal: 420 ave 420 max 420 min 518s Histogram: 1 0 0 0 0 0 0 0 0 0 518s Nghost: 51 ave 51 max 51 min 518s Histogram: 1 0 0 0 0 0 0 0 0 0 518s Neighs: 1150 ave 1150 max 1150 min 518s Histogram: 1 0 0 0 0 0 0 0 0 0 518s 518s Total # of neighbors = 1150 518s Ave neighs/atom = 2.7380952 518s Neighbor list builds = 563 518s Dangerous builds = 0 518s Total wall time: 0:00:00 518s run: OK 519s autopkgtest [08:16:16]: test flow: -----------------------] 519s autopkgtest [08:16:16]: test flow: - - - - - - - - - - results - - - - - - - - - - 519s flow PASS 520s autopkgtest [08:16:17]: test friction: preparing testbed 522s Reading package lists... 523s Building dependency tree... 523s Reading state information... 523s Starting pkgProblemResolver with broken count: 0 524s Starting 2 pkgProblemResolver with broken count: 0 524s Done 525s The following NEW packages will be installed: 525s autopkgtest-satdep 525s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 525s Need to get 0 B/704 B of archives. 525s After this operation, 0 B of additional disk space will be used. 525s Get:1 /tmp/autopkgtest.yOdUk2/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 526s Selecting previously unselected package autopkgtest-satdep. 526s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79527 files and directories currently installed.) 526s Preparing to unpack .../5-autopkgtest-satdep.deb ... 526s Unpacking autopkgtest-satdep (0) ... 526s Setting up autopkgtest-satdep (0) ... 530s (Reading database ... 79527 files and directories currently installed.) 530s Removing autopkgtest-satdep (0) ... 531s autopkgtest [08:16:28]: test friction: [----------------------- 532s LAMMPS (7 Feb 2024 - Update 1) 532s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 532s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 532s using 1 OpenMP thread(s) per MPI task 532s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 532s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 532s 2 by 1 by 1 MPI processor grid 532s Created 750 atoms 532s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 532s create_atoms CPU = 0.003 seconds 532s Created 750 atoms 532s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 532s create_atoms CPU = 0.001 seconds 532s Created 112 atoms 532s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 532s create_atoms CPU = 0.001 seconds 532s Created 112 atoms 532s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 532s create_atoms CPU = 0.001 seconds 532s 750 atoms in group lo 532s 862 atoms in group lo 532s 750 atoms in group hi 532s 862 atoms in group hi 532s 150 atoms in group lo-fixed 532s 150 atoms in group hi-fixed 532s 300 atoms in group boundary 532s 1424 atoms in group mobile 532s Setting atom values ... 532s 150 settings made for type 532s Setting atom values ... 532s 150 settings made for type 532s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 532s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 532s Neighbor list info ... 532s update: every = 1 steps, delay = 5 steps, check = yes 532s max neighbors/atom: 2000, page size: 100000 532s master list distance cutoff = 2.8 532s ghost atom cutoff = 2.8 532s binsize = 1.4, bins = 41 31 1 532s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 532s (1) pair lj/cut, perpetual 532s attributes: half, newton on 532s pair build: half/bin/atomonly/newton 532s stencil: half/bin/2d 532s bin: standard 532s Setting up Verlet run ... 532s Unit style : lj 532s Current step : 0 532s Time step : 0.0025 532s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 532s Step Temp E_pair E_mol TotEng Press Volume 532s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 533s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 533s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 534s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 535s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 536s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 537s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 537s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 538s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 539s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 540s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 541s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 542s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 542s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 543s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 544s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 545s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 546s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 546s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 547s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 548s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 548s Loop time of 16.0052 on 2 procs for 20000 steps with 1724 atoms 548s 548s Performance: 269912.874 tau/day, 1249.597 timesteps/s, 2.154 Matom-step/s 548s 42.9% CPU use with 2 MPI tasks x 1 OpenMP threads 548s 548s MPI task timing breakdown: 548s Section | min time | avg time | max time |%varavg| %total 548s --------------------------------------------------------------- 548s Pair | 4.7416 | 5.1022 | 5.4627 | 16.0 | 31.88 548s Neigh | 0.2707 | 0.29094 | 0.31118 | 3.8 | 1.82 548s Comm | 8.5661 | 8.9737 | 9.3813 | 13.6 | 56.07 548s Output | 0.0029408 | 0.0051915 | 0.0074422 | 3.1 | 0.03 548s Modify | 0.65331 | 0.69604 | 0.73877 | 5.1 | 4.35 548s Other | | 0.9371 | | | 5.86 548s 548s Nlocal: 862 ave 874 max 850 min 548s Histogram: 1 0 0 0 0 0 0 0 0 1 548s Nghost: 165.5 ave 166 max 165 min 548s Histogram: 1 0 0 0 0 0 0 0 0 1 548s Neighs: 7198 ave 7283 max 7113 min 548s Histogram: 1 0 0 0 0 0 0 0 0 1 548s 548s Total # of neighbors = 14396 548s Ave neighs/atom = 8.350348 548s Neighbor list builds = 720 548s Dangerous builds = 0 548s Total wall time: 0:00:16 548s LAMMPS (7 Feb 2024 - Update 1) 560s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 560s using 1 OpenMP thread(s) per MPI task 560s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 560s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 560s 1 by 1 by 1 MPI processor grid 560s Created 750 atoms 560s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 560s create_atoms CPU = 0.001 seconds 560s Created 750 atoms 560s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 560s create_atoms CPU = 0.001 seconds 560s Created 112 atoms 560s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 560s create_atoms CPU = 0.000 seconds 560s Created 112 atoms 560s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 560s create_atoms CPU = 0.000 seconds 560s 750 atoms in group lo 560s 862 atoms in group lo 560s 750 atoms in group hi 560s 862 atoms in group hi 560s 150 atoms in group lo-fixed 560s 150 atoms in group hi-fixed 560s 300 atoms in group boundary 560s 1424 atoms in group mobile 560s Setting atom values ... 560s 150 settings made for type 560s Setting atom values ... 560s 150 settings made for type 560s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 560s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 560s Neighbor list info ... 560s update: every = 1 steps, delay = 5 steps, check = yes 560s max neighbors/atom: 2000, page size: 100000 560s master list distance cutoff = 2.8 560s ghost atom cutoff = 2.8 560s binsize = 1.4, bins = 41 31 1 560s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 560s (1) pair lj/cut, perpetual 560s attributes: half, newton on 560s pair build: half/bin/atomonly/newton 560s stencil: half/bin/2d 560s bin: standard 560s Setting up Verlet run ... 560s Unit style : lj 560s Current step : 0 560s Time step : 0.0025 560s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 560s Step Temp E_pair E_mol TotEng Press Volume 560s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 560s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 560s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 560s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 560s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 560s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 560s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 560s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 560s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 560s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 560s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 560s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 560s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 560s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 560s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 560s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 560s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 560s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 560s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 561s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 561s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 561s Loop time of 12.3782 on 1 procs for 20000 steps with 1724 atoms 561s 561s Performance: 348999.756 tau/day, 1615.740 timesteps/s, 2.786 Matom-step/s 561s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 561s 561s MPI task timing breakdown: 561s Section | min time | avg time | max time |%varavg| %total 561s --------------------------------------------------------------- 561s Pair | 10.042 | 10.042 | 10.042 | 0.0 | 81.13 561s Neigh | 0.57057 | 0.57057 | 0.57057 | 0.0 | 4.61 561s Comm | 0.10038 | 0.10038 | 0.10038 | 0.0 | 0.81 561s Output | 0.0013542 | 0.0013542 | 0.0013542 | 0.0 | 0.01 561s Modify | 1.3567 | 1.3567 | 1.3567 | 0.0 | 10.96 561s Other | | 0.3074 | | | 2.48 561s 561s Nlocal: 1724 ave 1724 max 1724 min 561s Histogram: 1 0 0 0 0 0 0 0 0 0 561s Nghost: 145 ave 145 max 145 min 561s Histogram: 1 0 0 0 0 0 0 0 0 0 561s Neighs: 14397 ave 14397 max 14397 min 561s Histogram: 1 0 0 0 0 0 0 0 0 0 561s 561s Total # of neighbors = 14397 561s Ave neighs/atom = 8.3509281 561s Neighbor list builds = 723 561s Dangerous builds = 0 561s Total wall time: 0:00:12 561s run: OK 561s autopkgtest [08:16:58]: test friction: -----------------------] 562s autopkgtest [08:16:59]: test friction: - - - - - - - - - - results - - - - - - - - - - 562s friction PASS 562s autopkgtest [08:16:59]: test hugo: preparing testbed 564s Reading package lists... 564s Building dependency tree... 564s Reading state information... 565s Starting pkgProblemResolver with broken count: 0 565s Starting 2 pkgProblemResolver with broken count: 0 565s Done 567s The following NEW packages will be installed: 567s autopkgtest-satdep 567s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 567s Need to get 0 B/704 B of archives. 567s After this operation, 0 B of additional disk space will be used. 567s Get:1 /tmp/autopkgtest.yOdUk2/6-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 568s Selecting previously unselected package autopkgtest-satdep. 568s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79527 files and directories currently installed.) 568s Preparing to unpack .../6-autopkgtest-satdep.deb ... 568s Unpacking autopkgtest-satdep (0) ... 568s Setting up autopkgtest-satdep (0) ... 572s (Reading database ... 79527 files and directories currently installed.) 572s Removing autopkgtest-satdep (0) ... 573s autopkgtest [08:17:10]: test hugo: [----------------------- 574s LAMMPS (7 Feb 2024 - Update 1) 574s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 574s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 574s using 1 OpenMP thread(s) per MPI task 574s Lattice spacing in x,y,z = 1.4142135 2 2 574s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 574s 1 by 1 by 2 MPI processor grid 574s Created 1000 atoms 574s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 574s create_atoms CPU = 0.002 seconds 574s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 574s Neighbor list info ... 574s update: every = 1 steps, delay = 0 steps, check = yes 574s max neighbors/atom: 2000, page size: 100000 574s master list distance cutoff = 1.8475372 574s ghost atom cutoff = 1.8475372 574s binsize = 0.92376862, bins = 8 11 11 574s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 574s (1) pair lj/cubic, perpetual 574s attributes: half, newton on 574s pair build: half/bin/atomonly/newton 574s stencil: half/bin/3d 574s bin: standard 574s Setting up cg style minimization ... 574s Unit style : lj 574s Current step : 0 574s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 574s (src/min.cpp:219) 574s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 574s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 574s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 574s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 574s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 574s Loop time of 0.219091 on 2 procs for 134 steps with 1000 atoms 574s 574s 41.0% CPU use with 2 MPI tasks x 1 OpenMP threads 574s 574s Minimization stats: 574s Stopping criterion = force tolerance 574s Energy initial, next-to-last, final = 574s -6.29375358358574 -6.33442531515467 -6.33442531515467 574s Force two-norm initial, final = 3395.2895 5.526433e-10 574s Force max component initial, final = 1960.2713 3.2059964e-10 574s Final line search alpha, max atom move = 1 3.2059964e-10 574s Iterations, force evaluations = 134 137 574s 574s MPI task timing breakdown: 574s Section | min time | avg time | max time |%varavg| %total 574s --------------------------------------------------------------- 574s Pair | 0.058182 | 0.063035 | 0.067888 | 1.9 | 28.77 574s Neigh | 0.0008416 | 0.00089982 | 0.00095805 | 0.0 | 0.41 574s Comm | 0.10379 | 0.10846 | 0.11314 | 1.4 | 49.51 574s Output | 0.00019767 | 0.00020066 | 0.00020365 | 0.0 | 0.09 574s Modify | 0 | 0 | 0 | 0.0 | 0.00 574s Other | | 0.04649 | | | 21.22 574s 574s Nlocal: 500 ave 550 max 450 min 574s Histogram: 1 0 0 0 0 0 0 0 0 1 574s Nghost: 1214 ave 1264 max 1164 min 574s Histogram: 1 0 0 0 0 0 0 0 0 1 574s Neighs: 10500 ave 11550 max 9450 min 574s Histogram: 1 0 0 0 0 0 0 0 0 1 574s 574s Total # of neighbors = 21000 574s Ave neighs/atom = 21 574s Neighbor list builds = 1 574s Dangerous builds = 0 574s System init for write_restart ... 574s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 574s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 574s using 1 OpenMP thread(s) per MPI task 574s Reading restart file ... 574s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 574s restoring atom style atomic from restart 574s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 574s 1 by 1 by 2 MPI processor grid 574s restoring pair style lj/cubic from restart 574s 1000 atoms 574s read_restart CPU = 0.005 seconds 574s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 574s Neighbor list info ... 574s update: every = 1 steps, delay = 0 steps, check = yes 574s max neighbors/atom: 2000, page size: 100000 574s master list distance cutoff = 1.7475372 574s ghost atom cutoff = 1.7475372 574s binsize = 0.87376862, bins = 8 12 12 574s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 574s (1) pair lj/cubic, perpetual 574s attributes: half, newton on 574s pair build: half/bin/atomonly/newton 574s stencil: half/bin/3d 574s bin: standard 574s Setting up Verlet run ... 574s Unit style : lj 574s Current step : 0 574s Time step : 0.001 574s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 574s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 574s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 576s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 578s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 579s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 581s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 583s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 585s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 587s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 588s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 590s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 592s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 592s Loop time of 17.7682 on 2 procs for 10000 steps with 1000 atoms 592s 592s Performance: 48626.101 tau/day, 562.802 timesteps/s, 562.802 katom-step/s 592s 40.4% CPU use with 2 MPI tasks x 1 OpenMP threads 592s 592s MPI task timing breakdown: 592s Section | min time | avg time | max time |%varavg| %total 592s --------------------------------------------------------------- 592s Pair | 5.4609 | 5.4706 | 5.4804 | 0.4 | 30.79 592s Neigh | 0.18401 | 0.18755 | 0.1911 | 0.8 | 1.06 592s Comm | 8.8547 | 8.8566 | 8.8586 | 0.1 | 49.85 592s Output | 0.0043708 | 0.0044957 | 0.0046206 | 0.2 | 0.03 592s Modify | 2.7238 | 2.763 | 2.8022 | 2.4 | 15.55 592s Other | | 0.4859 | | | 2.73 592s 592s Nlocal: 500 ave 509 max 491 min 592s Histogram: 1 0 0 0 0 0 0 0 0 1 592s Nghost: 1346.5 ave 1369 max 1324 min 592s Histogram: 1 0 0 0 0 0 0 0 0 1 592s Neighs: 10311.5 ave 10391 max 10232 min 592s Histogram: 1 0 0 0 0 0 0 0 0 1 592s 592s Total # of neighbors = 20623 592s Ave neighs/atom = 20.623 592s Neighbor list builds = 205 592s Dangerous builds = 0 592s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 592s using 1 OpenMP thread(s) per MPI task 592s Reading restart file ... 592s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 592s restoring atom style atomic from restart 592s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 592s 1 by 1 by 2 MPI processor grid 592s restoring pair style lj/cubic from restart 592s 1000 atoms 592s read_restart CPU = 0.004 seconds 592s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 592s Neighbor list info ... 592s update: every = 1 steps, delay = 0 steps, check = yes 592s max neighbors/atom: 2000, page size: 100000 592s master list distance cutoff = 1.7475372 592s ghost atom cutoff = 1.7475372 592s binsize = 0.87376862, bins = 8 12 12 592s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 592s (1) pair lj/cubic, perpetual 592s attributes: half, newton on 592s pair build: half/bin/atomonly/newton 592s stencil: half/bin/3d 592s bin: standard 592s Setting up Verlet run ... 592s Unit style : lj 592s Current step : 0 592s Time step : 0.001 592s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 592s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 592s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 594s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 595s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 597s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 598s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 600s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 601s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 603s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 605s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 606s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 608s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 608s Loop time of 15.5714 on 2 procs for 10000 steps with 1000 atoms 608s 608s Performance: 55486.436 tau/day, 642.204 timesteps/s, 642.204 katom-step/s 608s 40.7% CPU use with 2 MPI tasks x 1 OpenMP threads 608s 608s MPI task timing breakdown: 608s Section | min time | avg time | max time |%varavg| %total 608s --------------------------------------------------------------- 608s Pair | 4.7133 | 4.7568 | 4.8002 | 2.0 | 30.55 608s Neigh | 0.0089277 | 0.0089444 | 0.0089611 | 0.0 | 0.06 608s Comm | 7.5778 | 7.6243 | 7.6707 | 1.7 | 48.96 608s Output | 0.0045901 | 0.0046203 | 0.0046505 | 0.0 | 0.03 608s Modify | 2.6906 | 2.713 | 2.7354 | 1.4 | 17.42 608s Other | | 0.4638 | | | 2.98 608s 608s Nlocal: 500 ave 508 max 492 min 608s Histogram: 1 0 0 0 0 0 0 0 0 1 608s Nghost: 1214 ave 1222 max 1206 min 608s Histogram: 1 0 0 0 0 0 0 0 0 1 608s Neighs: 10500 ave 10668 max 10332 min 608s Histogram: 1 0 0 0 0 0 0 0 0 1 608s 608s Total # of neighbors = 21000 608s Ave neighs/atom = 21 608s Neighbor list builds = 10 608s Dangerous builds = 0 608s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 608s using 1 OpenMP thread(s) per MPI task 608s Reading restart file ... 608s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 608s restoring atom style atomic from restart 608s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 608s 1 by 1 by 2 MPI processor grid 608s restoring pair style lj/cubic from restart 608s 1000 atoms 608s read_restart CPU = 0.004 seconds 608s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 608s Neighbor list info ... 608s update: every = 1 steps, delay = 0 steps, check = yes 608s max neighbors/atom: 2000, page size: 100000 608s master list distance cutoff = 1.7475372 608s ghost atom cutoff = 1.7475372 608s binsize = 0.87376862, bins = 8 12 12 608s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 608s (1) pair lj/cubic, perpetual 608s attributes: half, newton on 608s pair build: half/bin/atomonly/newton 608s stencil: half/bin/3d 608s bin: standard 608s Setting up Verlet run ... 608s Unit style : lj 608s Current step : 0 608s Time step : 0.001 608s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 608s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 608s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 609s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 611s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 612s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 614s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 615s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 617s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 619s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 620s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 622s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 623s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 623s Loop time of 15.7407 on 2 procs for 10000 steps with 1000 atoms 623s 623s Performance: 54889.627 tau/day, 635.297 timesteps/s, 635.297 katom-step/s 623s 40.6% CPU use with 2 MPI tasks x 1 OpenMP threads 623s 623s MPI task timing breakdown: 623s Section | min time | avg time | max time |%varavg| %total 623s --------------------------------------------------------------- 623s Pair | 4.7632 | 4.7724 | 4.7815 | 0.4 | 30.32 623s Neigh | 0.08436 | 0.084469 | 0.084579 | 0.0 | 0.54 623s Comm | 7.6735 | 7.687 | 7.7005 | 0.5 | 48.84 623s Output | 0.0037547 | 0.0042147 | 0.0046746 | 0.7 | 0.03 623s Modify | 2.704 | 2.7276 | 2.7513 | 1.4 | 17.33 623s Other | | 0.465 | | | 2.95 623s 623s Nlocal: 500 ave 510 max 490 min 623s Histogram: 1 0 0 0 0 0 0 0 0 1 623s Nghost: 1216.5 ave 1227 max 1206 min 623s Histogram: 1 0 0 0 0 0 0 0 0 1 623s Neighs: 10311 ave 10520 max 10102 min 623s Histogram: 1 0 0 0 0 0 0 0 0 1 623s 623s Total # of neighbors = 20622 623s Ave neighs/atom = 20.622 623s Neighbor list builds = 95 623s Dangerous builds = 0 623s Total wall time: 0:00:49 624s LAMMPS (7 Feb 2024 - Update 1) 624s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 624s using 1 OpenMP thread(s) per MPI task 624s Lattice spacing in x,y,z = 1.4142135 2 2 624s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 624s 1 by 1 by 1 MPI processor grid 624s Created 1000 atoms 624s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 624s create_atoms CPU = 0.001 seconds 624s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 624s Neighbor list info ... 624s update: every = 1 steps, delay = 0 steps, check = yes 624s max neighbors/atom: 2000, page size: 100000 624s master list distance cutoff = 1.8475372 624s ghost atom cutoff = 1.8475372 624s binsize = 0.92376862, bins = 8 11 11 624s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 624s (1) pair lj/cubic, perpetual 624s attributes: half, newton on 624s pair build: half/bin/atomonly/newton 624s stencil: half/bin/3d 624s bin: standard 624s Setting up cg style minimization ... 624s Unit style : lj 624s Current step : 0 624s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 624s (src/min.cpp:219) 624s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 624s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 624s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 624s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 624s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 624s Loop time of 0.149943 on 1 procs for 134 steps with 1000 atoms 624s 624s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 624s 624s Minimization stats: 624s Stopping criterion = force tolerance 624s Energy initial, next-to-last, final = 624s -6.29375358358556 -6.33442531515503 -6.33442531515503 624s Force two-norm initial, final = 3395.2895 5.6047601e-10 624s Force max component initial, final = 1960.2713 3.2666928e-10 624s Final line search alpha, max atom move = 1 3.2666928e-10 624s Iterations, force evaluations = 134 137 624s 624s MPI task timing breakdown: 624s Section | min time | avg time | max time |%varavg| %total 624s --------------------------------------------------------------- 624s Pair | 0.12336 | 0.12336 | 0.12336 | 0.0 | 82.27 624s Neigh | 0.0017659 | 0.0017659 | 0.0017659 | 0.0 | 1.18 624s Comm | 0.0038182 | 0.0038182 | 0.0038182 | 0.0 | 2.55 624s Output | 5.47e-05 | 5.47e-05 | 5.47e-05 | 0.0 | 0.04 624s Modify | 0 | 0 | 0 | 0.0 | 0.00 624s Other | | 0.02094 | | | 13.97 624s 624s Nlocal: 1000 ave 1000 max 1000 min 624s Histogram: 1 0 0 0 0 0 0 0 0 0 624s Nghost: 1724 ave 1724 max 1724 min 624s Histogram: 1 0 0 0 0 0 0 0 0 0 624s Neighs: 21000 ave 21000 max 21000 min 624s Histogram: 1 0 0 0 0 0 0 0 0 0 624s 624s Total # of neighbors = 21000 624s Ave neighs/atom = 21 624s Neighbor list builds = 1 624s Dangerous builds = 0 624s System init for write_restart ... 624s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 624s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 624s using 1 OpenMP thread(s) per MPI task 624s Reading restart file ... 624s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 624s restoring atom style atomic from restart 624s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 624s 1 by 1 by 1 MPI processor grid 624s restoring pair style lj/cubic from restart 624s 1000 atoms 624s read_restart CPU = 0.001 seconds 624s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 624s Neighbor list info ... 624s update: every = 1 steps, delay = 0 steps, check = yes 624s max neighbors/atom: 2000, page size: 100000 624s master list distance cutoff = 1.7475372 624s ghost atom cutoff = 1.7475372 624s binsize = 0.87376862, bins = 8 12 12 624s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 637s (1) pair lj/cubic, perpetual 637s attributes: half, newton on 637s pair build: half/bin/atomonly/newton 637s stencil: half/bin/3d 637s bin: standard 637s Setting up Verlet run ... 637s Unit style : lj 637s Current step : 0 637s Time step : 0.001 637s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 637s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 637s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 637s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 637s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 637s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 637s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 637s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 637s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 637s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 637s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 637s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 637s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 637s Loop time of 12.8305 on 1 procs for 10000 steps with 1000 atoms 637s 637s Performance: 67339.474 tau/day, 779.392 timesteps/s, 779.392 katom-step/s 637s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 637s 637s MPI task timing breakdown: 637s Section | min time | avg time | max time |%varavg| %total 637s --------------------------------------------------------------- 637s Pair | 10.738 | 10.738 | 10.738 | 0.0 | 83.69 637s Neigh | 0.32978 | 0.32978 | 0.32978 | 0.0 | 2.57 637s Comm | 0.29738 | 0.29738 | 0.29738 | 0.0 | 2.32 637s Output | 0.0011252 | 0.0011252 | 0.0011252 | 0.0 | 0.01 637s Modify | 1.3572 | 1.3572 | 1.3572 | 0.0 | 10.58 637s Other | | 0.1072 | | | 0.84 637s 637s Nlocal: 1000 ave 1000 max 1000 min 637s Histogram: 1 0 0 0 0 0 0 0 0 0 637s Nghost: 1886 ave 1886 max 1886 min 637s Histogram: 1 0 0 0 0 0 0 0 0 0 637s Neighs: 20874 ave 20874 max 20874 min 637s Histogram: 1 0 0 0 0 0 0 0 0 0 637s 637s Total # of neighbors = 20874 637s Ave neighs/atom = 20.874 637s Neighbor list builds = 188 637s Dangerous builds = 0 637s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 637s using 1 OpenMP thread(s) per MPI task 637s Reading restart file ... 637s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 637s restoring atom style atomic from restart 637s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 637s 1 by 1 by 1 MPI processor grid 637s restoring pair style lj/cubic from restart 637s 1000 atoms 637s read_restart CPU = 0.001 seconds 637s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 637s Neighbor list info ... 648s update: every = 1 steps, delay = 0 steps, check = yes 648s max neighbors/atom: 2000, page size: 100000 648s master list distance cutoff = 1.7475372 648s ghost atom cutoff = 1.7475372 648s binsize = 0.87376862, bins = 8 12 12 648s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 648s (1) pair lj/cubic, perpetual 648s attributes: half, newton on 648s pair build: half/bin/atomonly/newton 648s stencil: half/bin/3d 648s bin: standard 648s Setting up Verlet run ... 648s Unit style : lj 648s Current step : 0 648s Time step : 0.001 648s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 648s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 648s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 648s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 648s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 648s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 648s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 648s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 648s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 648s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 648s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 648s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 648s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 648s Loop time of 10.9191 on 1 procs for 10000 steps with 1000 atoms 648s 648s Performance: 79127.374 tau/day, 915.826 timesteps/s, 915.826 katom-step/s 648s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 648s 648s MPI task timing breakdown: 648s Section | min time | avg time | max time |%varavg| %total 648s --------------------------------------------------------------- 648s Pair | 9.1958 | 9.1958 | 9.1958 | 0.0 | 84.22 648s Neigh | 0.018734 | 0.018734 | 0.018734 | 0.0 | 0.17 648s Comm | 0.26187 | 0.26187 | 0.26187 | 0.0 | 2.40 648s Output | 0.0011442 | 0.0011442 | 0.0011442 | 0.0 | 0.01 648s Modify | 1.3415 | 1.3415 | 1.3415 | 0.0 | 12.29 648s Other | | 0.1 | | | 0.92 648s 648s Nlocal: 1000 ave 1000 max 1000 min 648s Histogram: 1 0 0 0 0 0 0 0 0 0 648s Nghost: 1724 ave 1724 max 1724 min 648s Histogram: 1 0 0 0 0 0 0 0 0 0 648s Neighs: 21000 ave 21000 max 21000 min 648s Histogram: 1 0 0 0 0 0 0 0 0 0 648s 648s Total # of neighbors = 21000 648s Ave neighs/atom = 21 648s Neighbor list builds = 11 648s Dangerous builds = 0 648s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 648s using 1 OpenMP thread(s) per MPI task 648s Reading restart file ... 648s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 648s restoring atom style atomic from restart 659s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 659s 1 by 1 by 1 MPI processor grid 659s restoring pair style lj/cubic from restart 659s 1000 atoms 659s read_restart CPU = 0.001 seconds 659s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 659s Neighbor list info ... 659s update: every = 1 steps, delay = 0 steps, check = yes 659s max neighbors/atom: 2000, page size: 100000 659s master list distance cutoff = 1.7475372 659s ghost atom cutoff = 1.7475372 659s binsize = 0.87376862, bins = 8 12 12 659s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 659s (1) pair lj/cubic, perpetual 659s attributes: half, newton on 659s pair build: half/bin/atomonly/newton 659s stencil: half/bin/3d 659s bin: standard 659s Setting up Verlet run ... 659s Unit style : lj 659s Current step : 0 659s Time step : 0.001 659s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 659s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 659s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 659s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 659s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 659s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 659s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 659s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 659s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 659s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 659s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 659s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 659s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 659s Loop time of 11.2379 on 1 procs for 10000 steps with 1000 atoms 659s 659s Performance: 76882.530 tau/day, 889.844 timesteps/s, 889.844 katom-step/s 659s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 659s 659s MPI task timing breakdown: 659s Section | min time | avg time | max time |%varavg| %total 659s --------------------------------------------------------------- 659s Pair | 9.3416 | 9.3416 | 9.3416 | 0.0 | 83.13 659s Neigh | 0.16398 | 0.16398 | 0.16398 | 0.0 | 1.46 659s Comm | 0.26809 | 0.26809 | 0.26809 | 0.0 | 2.39 659s Output | 0.0011113 | 0.0011113 | 0.0011113 | 0.0 | 0.01 659s Modify | 1.3603 | 1.3603 | 1.3603 | 0.0 | 12.10 659s Other | | 0.1028 | | | 0.92 659s 659s Nlocal: 1000 ave 1000 max 1000 min 659s Histogram: 1 0 0 0 0 0 0 0 0 0 659s Nghost: 1724 ave 1724 max 1724 min 659s Histogram: 1 0 0 0 0 0 0 0 0 0 659s Neighs: 20654 ave 20654 max 20654 min 659s Histogram: 1 0 0 0 0 0 0 0 0 0 659s 659s Total # of neighbors = 20654 659s Ave neighs/atom = 20.654 659s Neighbor list builds = 94 659s Dangerous builds = 0 659s Total wall time: 0:00:35 659s run: OK 659s autopkgtest [08:18:36]: test hugo: -----------------------] 661s autopkgtest [08:18:38]: test hugo: - - - - - - - - - - results - - - - - - - - - - 661s hugo PASS 662s autopkgtest [08:18:39]: test command1: preparing testbed 806s autopkgtest [08:21:03]: testbed dpkg architecture: arm64 806s autopkgtest [08:21:03]: testbed apt version: 2.7.12 806s autopkgtest [08:21:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 808s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 809s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.8 kB] 809s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 810s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3987 kB] 812s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 812s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 813s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 813s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 813s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 813s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4363 kB] 813s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 813s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [71.0 kB] 813s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 823s Fetched 9851 kB in 7s (1325 kB/s) 823s Reading package lists... 831s Reading package lists... 831s Building dependency tree... 831s Reading state information... 833s Calculating upgrade... 834s The following packages will be REMOVED: 834s libssl3 834s The following NEW packages will be installed: 834s libssl3t64 834s The following packages have been kept back: 834s curl 834s The following packages will be upgraded: 834s openssl 835s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 835s Need to get 2777 kB of archives. 835s After this operation, 139 kB of additional disk space will be used. 835s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 835s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 837s Fetched 2777 kB in 1s (3013 kB/s) 837s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 837s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 837s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 838s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 838s wget depends on libssl3 (>= 3.0.0). 838s u-boot-tools depends on libssl3 (>= 3.0.0). 838s tnftp depends on libssl3 (>= 3.0.0). 838s tcpdump depends on libssl3 (>= 3.0.0). 838s systemd-resolved depends on libssl3 (>= 3.0.0). 838s systemd depends on libssl3 (>= 3.0.0). 838s sudo depends on libssl3 (>= 3.0.0). 838s sbsigntool depends on libssl3 (>= 3.0.0). 838s rsync depends on libssl3 (>= 3.0.0). 838s python3-cryptography depends on libssl3 (>= 3.0.0). 838s openssh-server depends on libssl3 (>= 3.0.10). 838s openssh-client depends on libssl3 (>= 3.0.10). 838s mtd-utils depends on libssl3 (>= 3.0.0). 838s mokutil depends on libssl3 (>= 3.0.0). 838s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 838s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 838s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 838s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 838s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 838s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 838s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 838s libnvme1 depends on libssl3 (>= 3.0.0). 838s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 838s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 838s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 838s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 838s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 838s kmod depends on libssl3 (>= 3.0.0). 838s dhcpcd-base depends on libssl3 (>= 3.0.0). 838s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 838s 838s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 838s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 838s Selecting previously unselected package libssl3t64:arm64. 838s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 838s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 838s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 839s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 839s Setting up openssl (3.0.13-0ubuntu2) ... 839s Processing triggers for man-db (2.12.0-3) ... 840s Processing triggers for libc-bin (2.39-0ubuntu6) ... 842s Reading package lists... 843s Building dependency tree... 843s Reading state information... 844s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 846s sh: Attempting to set up Debian/Ubuntu apt sources automatically 846s sh: Distribution appears to be Ubuntu 850s Reading package lists... 851s Building dependency tree... 851s Reading state information... 853s eatmydata is already the newest version (131-1). 853s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 853s Reading package lists... 853s Building dependency tree... 853s Reading state information... 855s dbus is already the newest version (1.14.10-4ubuntu1). 855s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 855s Reading package lists... 856s Building dependency tree... 856s Reading state information... 858s rng-tools-debian is already the newest version (2.4). 858s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 858s Reading package lists... 859s Building dependency tree... 859s Reading state information... 860s The following packages will be REMOVED: 860s cloud-init* python3-configobj* python3-debconf* 862s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 862s After this operation, 3256 kB disk space will be freed. 862s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 862s Removing cloud-init (24.1.2-0ubuntu1) ... 864s Removing python3-configobj (5.0.8-3) ... 864s Removing python3-debconf (1.5.86) ... 865s Processing triggers for man-db (2.12.0-3) ... 866s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 866s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 868s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 868s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 868s invoke-rc.d: policy-rc.d denied execution of try-restart. 869s Reading package lists... 870s Building dependency tree... 870s Reading state information... 872s linux-generic is already the newest version (6.8.0-11.11+1). 872s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 872s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 872s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 872s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 883s Reading package lists... 883s Reading package lists... 884s Building dependency tree... 884s Reading state information... 885s Calculating upgrade... 887s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 887s Reading package lists... 887s Building dependency tree... 887s Reading state information... 889s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 890s autopkgtest [08:22:27]: rebooting testbed after setup commands that affected boot 1056s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1069s Reading package lists... 1070s Building dependency tree... 1070s Reading state information... 1071s Starting pkgProblemResolver with broken count: 0 1071s Starting 2 pkgProblemResolver with broken count: 0 1071s Done 1073s The following additional packages will be installed: 1073s autoconf automake autotools-dev cpp-12 fontconfig-config fonts-dejavu-core 1073s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 libamd-comgr2 1073s libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 1073s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 1073s libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7 libevent-dev 1073s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 1073s libfabric1 libfftw3-double3 libfontconfig1 libgcc-12-dev libgfortran-12-dev 1073s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 1073s libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 1073s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins 1073s libhwloc15 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 1073s libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 1073s liblammps0 liblapack3 liblerc4 libllvm17 liblsan0 libltdl-dev libltdl7 1073s libmpc3 libmunge2 libnetcdf19 libnl-3-dev libnl-route-3-dev libnuma-dev 1073s libogg0 libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpixman-1-0 1073s libpmix-dev libpmix2 libpnetcdf0d libproj25 libpython3.12 librdmacm1t64 1073s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 1073s libtheora0 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 libvtk9.1 1073s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 1073s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 1073s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 1073s libxss1 libxxf86vm1 linux-libc-dev m4 mpi-default-bin mpi-default-dev 1073s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 1073s rpcsvc-proto x11-common zlib1g-dev 1073s Suggested packages: 1073s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 1073s cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev glibc-doc manpages-dev 1073s libfftw3-bin libfftw3-dev glew-utils libjs-jquery-ui-docs libtool-doc 1073s openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples m4-doc opencl-icd 1073s gfortran | fortran-compiler 1073s Recommended packages: 1073s manpages manpages-dev libc-devtools libgl1-amber-dri javascript-common 1073s lammps-doc libtool libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd 1073s python3-mpi4py 1073s The following NEW packages will be installed: 1073s autoconf automake autopkgtest-satdep autotools-dev cpp-12 fontconfig-config 1073s fonts-dejavu-core fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 1073s libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin 1073s libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 1073s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7 libevent-dev 1073s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 1073s libfabric1 libfftw3-double3 libfontconfig1 libgcc-12-dev libgfortran-12-dev 1073s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 1073s libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 1073s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins 1073s libhwloc15 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 1073s libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 1073s liblammps0 liblapack3 liblerc4 libllvm17 liblsan0 libltdl-dev libltdl7 1073s libmpc3 libmunge2 libnetcdf19 libnl-3-dev libnl-route-3-dev libnuma-dev 1073s libogg0 libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpixman-1-0 1073s libpmix-dev libpmix2 libpnetcdf0d libproj25 libpython3.12 librdmacm1t64 1073s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 1073s libtheora0 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 libvtk9.1 1073s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 1073s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 1073s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 1073s libxss1 libxxf86vm1 linux-libc-dev m4 mpi-default-bin mpi-default-dev 1073s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 1073s rpcsvc-proto x11-common zlib1g-dev 1073s 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. 1073s Need to get 174 MB/174 MB of archives. 1073s After this operation, 702 MB of additional disk space will be used. 1073s Get:1 /tmp/autopkgtest.yOdUk2/7-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 1074s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB] 1074s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] 1074s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] 1074s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 1074s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12-base arm64 12.3.0-15ubuntu1 [45.5 kB] 1074s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 1074s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 1074s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 cpp-12 arm64 12.3.0-15ubuntu1 [9585 kB] 1075s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 1075s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 1075s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 1075s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 1075s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 1075s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 1076s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 1076s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 1076s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 1076s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 1076s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 1076s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 1076s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libgcc-12-dev arm64 12.3.0-15ubuntu1 [1157 kB] 1076s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12 arm64 12.3.0-15ubuntu1 [19.1 MB] 1077s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 1077s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libgfortran-12-dev arm64 12.3.0-15ubuntu1 [471 kB] 1077s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB] 1077s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 1077s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 1077s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 1077s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB] 1077s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 gfortran-12 arm64 12.3.0-15ubuntu1 [10.1 MB] 1078s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 1078s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 1080s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 1080s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 1080s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 1080s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 1080s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 1081s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 1083s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 1083s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 1083s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 1083s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 1083s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 1083s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 1083s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 1083s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 1083s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 1083s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 1083s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-2.1-7 arm64 2.1.12-stable-9 [138 kB] 1083s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-9 [61.3 kB] 1083s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 1083s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-9 [14.6 kB] 1083s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-dev arm64 2.1.12-stable-9 [282 kB] 1083s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 1083s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3build1 [541 kB] 1083s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB] 1083s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 1083s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 1083s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 1083s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 1083s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 1083s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 1083s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 1083s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 1083s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 1083s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 1083s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 1083s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 1083s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 1083s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 1083s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 1083s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 1083s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 1083s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 1083s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2 [41.5 kB] 1083s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4 [200 kB] 1083s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 1083s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 1083s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 1083s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 1083s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 1083s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 1083s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1083s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1083s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 1083s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libkim-api2 arm64 2.3.0-1 [554 kB] 1083s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 1083s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 1083s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 1083s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 1083s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 1083s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 1083s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 1083s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB] 1083s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 1083s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB] 1083s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libpnetcdf0d arm64 1.12.3-2 [842 kB] 1083s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 1083s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 1083s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libogg0 arm64 1.3.5-3 [22.1 kB] 1083s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 1083s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 1084s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 1084s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 1084s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 1084s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 1084s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 1084s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 1084s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbmalloc2 arm64 2021.11.0-2ubuntu2 [43.8 kB] 1084s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbbind-2-5 arm64 2021.11.0-2ubuntu2 [16.4 kB] 1084s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbb12 arm64 2021.11.0-2ubuntu2 [79.9 kB] 1084s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 1084s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libtheora0 arm64 1.1.1+dfsg.1-16.1 [221 kB] 1084s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 1084s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1084s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 1084s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 1084s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libvtk9.1 arm64 9.1.0+really9.1.0+dfsg2-7build1 [19.2 MB] 1085s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 liblammps0 arm64 20240207+dfsg-1 [6751 kB] 1086s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB] 1086s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-3-dev arm64 3.7.0-0.3 [105 kB] 1086s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-route-3-dev arm64 3.7.0-0.3 [225 kB] 1086s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libibverbs-dev arm64 50.0-2 [686 kB] 1086s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma-dev arm64 2.0.18-1 [39.5 kB] 1086s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 1086s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl-dev arm64 2.4.7-7 [170 kB] 1086s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-dev arm64 2.10.0-1 [259 kB] 1086s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 1086s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix-dev arm64 5.0.1-4 [4017 kB] 1086s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB] 1086s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi-dev arm64 4.1.6-5ubuntu1 [1713 kB] 1086s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-dev arm64 1.15 [3118 B] 1086s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 liblammps-dev arm64 20240207+dfsg-1 [112 kB] 1086s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 1086s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lammps arm64 20240207+dfsg-1 [70.4 kB] 1089s Fetched 174 MB in 13s (13.7 MB/s) 1089s Selecting previously unselected package m4. 1089s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 1089s Preparing to unpack .../000-m4_1.4.19-4_arm64.deb ... 1089s Unpacking m4 (1.4.19-4) ... 1089s Selecting previously unselected package autoconf. 1089s Preparing to unpack .../001-autoconf_2.71-3_all.deb ... 1089s Unpacking autoconf (2.71-3) ... 1090s Selecting previously unselected package autotools-dev. 1090s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 1090s Unpacking autotools-dev (20220109.1) ... 1090s Selecting previously unselected package automake. 1090s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 1090s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 1090s Selecting previously unselected package gcc-12-base:arm64. 1090s Preparing to unpack .../004-gcc-12-base_12.3.0-15ubuntu1_arm64.deb ... 1090s Unpacking gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 1090s Selecting previously unselected package libisl23:arm64. 1090s Preparing to unpack .../005-libisl23_0.26-3_arm64.deb ... 1090s Unpacking libisl23:arm64 (0.26-3) ... 1090s Selecting previously unselected package libmpc3:arm64. 1090s Preparing to unpack .../006-libmpc3_1.3.1-1_arm64.deb ... 1090s Unpacking libmpc3:arm64 (1.3.1-1) ... 1090s Selecting previously unselected package cpp-12. 1090s Preparing to unpack .../007-cpp-12_12.3.0-15ubuntu1_arm64.deb ... 1090s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 1092s Selecting previously unselected package fonts-dejavu-mono. 1092s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 1092s Unpacking fonts-dejavu-mono (2.37-8) ... 1092s Selecting previously unselected package fonts-dejavu-core. 1092s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 1092s Unpacking fonts-dejavu-core (2.37-8) ... 1092s Selecting previously unselected package fontconfig-config. 1092s Preparing to unpack .../010-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 1093s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1093s Selecting previously unselected package libcc1-0:arm64. 1093s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 1093s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 1093s Selecting previously unselected package libgomp1:arm64. 1093s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 1093s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 1093s Selecting previously unselected package libitm1:arm64. 1093s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_arm64.deb ... 1093s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 1093s Selecting previously unselected package libatomic1:arm64. 1093s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 1093s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 1093s Selecting previously unselected package libasan8:arm64. 1093s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_arm64.deb ... 1093s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 1094s Selecting previously unselected package liblsan0:arm64. 1094s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 1094s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 1094s Selecting previously unselected package libtsan2:arm64. 1094s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 1094s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 1095s Selecting previously unselected package libubsan1:arm64. 1095s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 1095s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 1095s Selecting previously unselected package libhwasan0:arm64. 1095s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 1095s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 1095s Selecting previously unselected package libgcc-12-dev:arm64. 1095s Preparing to unpack .../020-libgcc-12-dev_12.3.0-15ubuntu1_arm64.deb ... 1095s Unpacking libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 1096s Selecting previously unselected package gcc-12. 1096s Preparing to unpack .../021-gcc-12_12.3.0-15ubuntu1_arm64.deb ... 1096s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 1098s Selecting previously unselected package libgfortran5:arm64. 1098s Preparing to unpack .../022-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 1098s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 1099s Selecting previously unselected package libgfortran-12-dev:arm64. 1099s Preparing to unpack .../023-libgfortran-12-dev_12.3.0-15ubuntu1_arm64.deb ... 1099s Unpacking libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 1099s Selecting previously unselected package libc-dev-bin. 1099s Preparing to unpack .../024-libc-dev-bin_2.39-0ubuntu6_arm64.deb ... 1099s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 1099s Selecting previously unselected package linux-libc-dev:arm64. 1099s Preparing to unpack .../025-linux-libc-dev_6.8.0-11.11_arm64.deb ... 1099s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 1100s Selecting previously unselected package libcrypt-dev:arm64. 1100s Preparing to unpack .../026-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 1100s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 1100s Selecting previously unselected package rpcsvc-proto. 1100s Preparing to unpack .../027-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 1100s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1100s Selecting previously unselected package libc6-dev:arm64. 1100s Preparing to unpack .../028-libc6-dev_2.39-0ubuntu6_arm64.deb ... 1100s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ... 1101s Selecting previously unselected package gfortran-12. 1101s Preparing to unpack .../029-gfortran-12_12.3.0-15ubuntu1_arm64.deb ... 1101s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 1102s Selecting previously unselected package libaec0:arm64. 1102s Preparing to unpack .../030-libaec0_1.1.2-1_arm64.deb ... 1102s Unpacking libaec0:arm64 (1.1.2-1) ... 1102s Selecting previously unselected package libllvm17:arm64. 1102s Preparing to unpack .../031-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 1102s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 1107s Selecting previously unselected package libamd-comgr2:arm64. 1107s Preparing to unpack .../032-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 1107s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 1110s Selecting previously unselected package libdrm-amdgpu1:arm64. 1110s Preparing to unpack .../033-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 1110s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 1110s Selecting previously unselected package libhsakmt1:arm64. 1110s Preparing to unpack .../034-libhsakmt1_5.7.0-1_arm64.deb ... 1110s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 1110s Selecting previously unselected package libhsa-runtime64-1. 1110s Preparing to unpack .../035-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 1110s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 1110s Selecting previously unselected package libamdhip64-5. 1110s Preparing to unpack .../036-libamdhip64-5_5.2.3-12_arm64.deb ... 1110s Unpacking libamdhip64-5 (5.2.3-12) ... 1111s Selecting previously unselected package libblas3:arm64. 1111s Preparing to unpack .../037-libblas3_3.12.0-3_arm64.deb ... 1111s Unpacking libblas3:arm64 (3.12.0-3) ... 1111s Selecting previously unselected package libfontconfig1:arm64. 1111s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 1111s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1111s Selecting previously unselected package libpixman-1-0:arm64. 1111s Preparing to unpack .../039-libpixman-1-0_0.42.2-1_arm64.deb ... 1111s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 1111s Selecting previously unselected package libxcb-render0:arm64. 1111s Preparing to unpack .../040-libxcb-render0_1.15-1_arm64.deb ... 1111s Unpacking libxcb-render0:arm64 (1.15-1) ... 1111s Selecting previously unselected package libxcb-shm0:arm64. 1111s Preparing to unpack .../041-libxcb-shm0_1.15-1_arm64.deb ... 1111s Unpacking libxcb-shm0:arm64 (1.15-1) ... 1112s Selecting previously unselected package libxrender1:arm64. 1112s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 1112s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 1112s Selecting previously unselected package libcairo2:arm64. 1112s Preparing to unpack .../043-libcairo2_1.18.0-1_arm64.deb ... 1112s Unpacking libcairo2:arm64 (1.18.0-1) ... 1112s Selecting previously unselected package libdeflate0:arm64. 1112s Preparing to unpack .../044-libdeflate0_1.19-1_arm64.deb ... 1112s Unpacking libdeflate0:arm64 (1.19-1) ... 1112s Selecting previously unselected package libdouble-conversion3:arm64. 1112s Preparing to unpack .../045-libdouble-conversion3_3.3.0-1_arm64.deb ... 1112s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 1112s Selecting previously unselected package libdrm-nouveau2:arm64. 1112s Preparing to unpack .../046-libdrm-nouveau2_2.4.120-2_arm64.deb ... 1112s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 1112s Selecting previously unselected package libdrm-radeon1:arm64. 1112s Preparing to unpack .../047-libdrm-radeon1_2.4.120-2_arm64.deb ... 1112s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 1112s Selecting previously unselected package libevent-2.1-7:arm64. 1112s Preparing to unpack .../048-libevent-2.1-7_2.1.12-stable-9_arm64.deb ... 1112s Unpacking libevent-2.1-7:arm64 (2.1.12-stable-9) ... 1112s Selecting previously unselected package libevent-extra-2.1-7:arm64. 1112s Preparing to unpack .../049-libevent-extra-2.1-7_2.1.12-stable-9_arm64.deb ... 1112s Unpacking libevent-extra-2.1-7:arm64 (2.1.12-stable-9) ... 1112s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 1112s Preparing to unpack .../050-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 1112s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 1113s Selecting previously unselected package libevent-openssl-2.1-7:arm64. 1113s Preparing to unpack .../051-libevent-openssl-2.1-7_2.1.12-stable-9_arm64.deb ... 1113s Unpacking libevent-openssl-2.1-7:arm64 (2.1.12-stable-9) ... 1113s Selecting previously unselected package libevent-dev. 1113s Preparing to unpack .../052-libevent-dev_2.1.12-stable-9_arm64.deb ... 1113s Unpacking libevent-dev (2.1.12-stable-9) ... 1113s Selecting previously unselected package librdmacm1t64:arm64. 1113s Preparing to unpack .../053-librdmacm1t64_50.0-2_arm64.deb ... 1113s Unpacking librdmacm1t64:arm64 (50.0-2) ... 1113s Selecting previously unselected package libfabric1:arm64. 1113s Preparing to unpack .../054-libfabric1_1.17.0-3build1_arm64.deb ... 1113s Unpacking libfabric1:arm64 (1.17.0-3build1) ... 1113s Selecting previously unselected package libfftw3-double3:arm64. 1113s Preparing to unpack .../055-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ... 1113s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 1113s Selecting previously unselected package libvulkan1:arm64. 1113s Preparing to unpack .../056-libvulkan1_1.3.275.0-1_arm64.deb ... 1113s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 1113s Selecting previously unselected package libglapi-mesa:arm64. 1113s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 1113s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1113s Selecting previously unselected package libxcb-dri3-0:arm64. 1113s Preparing to unpack .../058-libxcb-dri3-0_1.15-1_arm64.deb ... 1113s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 1114s Selecting previously unselected package libgl1-mesa-dri:arm64. 1114s Preparing to unpack .../059-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 1114s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1115s Selecting previously unselected package libglvnd0:arm64. 1115s Preparing to unpack .../060-libglvnd0_1.7.0-1_arm64.deb ... 1115s Unpacking libglvnd0:arm64 (1.7.0-1) ... 1115s Selecting previously unselected package libx11-xcb1:arm64. 1115s Preparing to unpack .../061-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 1115s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 1115s Selecting previously unselected package libxcb-dri2-0:arm64. 1115s Preparing to unpack .../062-libxcb-dri2-0_1.15-1_arm64.deb ... 1115s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 1115s Selecting previously unselected package libxcb-glx0:arm64. 1115s Preparing to unpack .../063-libxcb-glx0_1.15-1_arm64.deb ... 1115s Unpacking libxcb-glx0:arm64 (1.15-1) ... 1115s Selecting previously unselected package libxcb-present0:arm64. 1116s Preparing to unpack .../064-libxcb-present0_1.15-1_arm64.deb ... 1116s Unpacking libxcb-present0:arm64 (1.15-1) ... 1116s Selecting previously unselected package libxcb-randr0:arm64. 1116s Preparing to unpack .../065-libxcb-randr0_1.15-1_arm64.deb ... 1116s Unpacking libxcb-randr0:arm64 (1.15-1) ... 1116s Selecting previously unselected package libxcb-sync1:arm64. 1116s Preparing to unpack .../066-libxcb-sync1_1.15-1_arm64.deb ... 1116s Unpacking libxcb-sync1:arm64 (1.15-1) ... 1116s Selecting previously unselected package libxcb-xfixes0:arm64. 1116s Preparing to unpack .../067-libxcb-xfixes0_1.15-1_arm64.deb ... 1116s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 1116s Selecting previously unselected package libxfixes3:arm64. 1116s Preparing to unpack .../068-libxfixes3_1%3a6.0.0-2_arm64.deb ... 1116s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 1116s Selecting previously unselected package libxshmfence1:arm64. 1116s Preparing to unpack .../069-libxshmfence1_1.3-1build4_arm64.deb ... 1116s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 1116s Selecting previously unselected package libxxf86vm1:arm64. 1116s Preparing to unpack .../070-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 1116s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1116s Selecting previously unselected package libglx-mesa0:arm64. 1116s Preparing to unpack .../071-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 1116s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1116s Selecting previously unselected package libglx0:arm64. 1117s Preparing to unpack .../072-libglx0_1.7.0-1_arm64.deb ... 1117s Unpacking libglx0:arm64 (1.7.0-1) ... 1117s Selecting previously unselected package libgl1:arm64. 1117s Preparing to unpack .../073-libgl1_1.7.0-1_arm64.deb ... 1117s Unpacking libgl1:arm64 (1.7.0-1) ... 1117s Selecting previously unselected package libgl2ps1.4. 1117s Preparing to unpack .../074-libgl2ps1.4_1.4.2+dfsg1-2_arm64.deb ... 1117s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 1117s Selecting previously unselected package libglew2.2:arm64. 1117s Preparing to unpack .../075-libglew2.2_2.2.0-4_arm64.deb ... 1117s Unpacking libglew2.2:arm64 (2.2.0-4) ... 1117s Selecting previously unselected package libsz2:arm64. 1117s Preparing to unpack .../076-libsz2_1.1.2-1_arm64.deb ... 1117s Unpacking libsz2:arm64 (1.1.2-1) ... 1117s Selecting previously unselected package libhdf5-103-1:arm64. 1117s Preparing to unpack .../077-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 1117s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 1117s Selecting previously unselected package libhdf5-hl-100:arm64. 1118s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 1118s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 1118s Selecting previously unselected package libhwloc15:arm64. 1118s Preparing to unpack .../079-libhwloc15_2.10.0-1_arm64.deb ... 1118s Unpacking libhwloc15:arm64 (2.10.0-1) ... 1118s Selecting previously unselected package libjpeg-turbo8:arm64. 1118s Preparing to unpack .../080-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 1118s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1118s Selecting previously unselected package libjpeg8:arm64. 1118s Preparing to unpack .../081-libjpeg8_8c-2ubuntu11_arm64.deb ... 1118s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1118s Selecting previously unselected package libjs-jquery. 1118s Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1118s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1118s Selecting previously unselected package libjs-jquery-ui. 1118s Preparing to unpack .../083-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1118s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1119s Selecting previously unselected package libjsoncpp25:arm64. 1119s Preparing to unpack .../084-libjsoncpp25_1.9.5-6_arm64.deb ... 1119s Unpacking libjsoncpp25:arm64 (1.9.5-6) ... 1119s Selecting previously unselected package libkim-api2:arm64. 1119s Preparing to unpack .../085-libkim-api2_2.3.0-1_arm64.deb ... 1119s Unpacking libkim-api2:arm64 (2.3.0-1) ... 1119s Selecting previously unselected package liblapack3:arm64. 1119s Preparing to unpack .../086-liblapack3_3.12.0-3_arm64.deb ... 1119s Unpacking liblapack3:arm64 (3.12.0-3) ... 1120s Selecting previously unselected package libnetcdf19:arm64. 1120s Preparing to unpack .../087-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 1120s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 1120s Selecting previously unselected package libmunge2:arm64. 1120s Preparing to unpack .../088-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 1120s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 1120s Selecting previously unselected package libpciaccess0:arm64. 1120s Preparing to unpack .../089-libpciaccess0_0.17-3_arm64.deb ... 1120s Unpacking libpciaccess0:arm64 (0.17-3) ... 1120s Selecting previously unselected package libxnvctrl0:arm64. 1120s Preparing to unpack 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previously unselected package proj-data. 1123s Preparing to unpack .../101-proj-data_9.3.1-1_all.deb ... 1123s Unpacking proj-data (9.3.1-1) ... 1124s Selecting previously unselected package libjbig0:arm64. 1124s Preparing to unpack .../102-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 1124s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 1124s Selecting previously unselected package liblerc4:arm64. 1124s Preparing to unpack .../103-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 1124s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1124s Selecting previously unselected package libsharpyuv0:arm64. 1124s Preparing to unpack .../104-libsharpyuv0_1.3.2-0.4_arm64.deb ... 1124s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 1124s Selecting previously unselected package libwebp7:arm64. 1124s Preparing to unpack .../105-libwebp7_1.3.2-0.4_arm64.deb ... 1124s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 1125s Selecting previously unselected package libtiff6:arm64. 1125s Preparing to unpack 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libdouble-conversion3:arm64 (3.3.0-1) ... 1137s Setting up libevent-extra-2.1-7:arm64 (2.1.12-stable-9) ... 1137s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 1137s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 1137s Setting up libogg0:arm64 (1.3.5-3) ... 1137s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1137s Setting up proj-data (9.3.1-1) ... 1137s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 1137s Setting up libxcb-render0:arm64 (1.15-1) ... 1137s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 1137s Setting up libglvnd0:arm64 (1.7.0-1) ... 1137s Setting up libxcb-glx0:arm64 (1.15-1) ... 1137s Setting up x11-common (1:7.7+23ubuntu2) ... 1139s Setting up libdeflate0:arm64 (1.19-1) ... 1139s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 1139s Setting up libevent-openssl-2.1-7:arm64 (2.1.12-stable-9) ... 1139s Setting up m4 (1.4.19-4) ... 1139s Setting up libxcb-shm0:arm64 (1.15-1) ... 1139s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 1139s Setting up libaec0:arm64 (1.1.2-1) ... 1139s Setting up libopengl0:arm64 (1.7.0-1) ... 1139s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1139s Setting up gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 1139s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 1139s Setting up libxcb-present0:arm64 (1.15-1) ... 1139s Setting up autotools-dev (20220109.1) ... 1139s Setting up libblas3:arm64 (3.12.0-3) ... 1139s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 1139s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 1139s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 1139s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 1139s Setting up libxcb-sync1:arm64 (1.15-1) ... 1139s Setting up fonts-dejavu-mono (2.37-8) ... 1139s Setting up libhwloc15:arm64 (2.10.0-1) ... 1139s Setting up libmpc3:arm64 (1.3.1-1) ... 1139s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up libevent-2.1-7:arm64 (2.1.12-stable-9) ... 1139s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 1139s Setting up libjsoncpp25:arm64 (1.9.5-6) ... 1139s Setting up fonts-dejavu-core (2.37-8) ... 1139s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1139s Setting up libltdl7:arm64 (2.4.7-7) ... 1139s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 1139s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1139s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 1139s Setting up autoconf (2.71-3) ... 1139s Setting up libwebp7:arm64 (1.3.2-0.4) ... 1139s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 1139s Setting up libnl-3-dev:arm64 (3.7.0-0.3) ... 1139s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 1139s Setting up libxshmfence1:arm64 (1.3-1build4) ... 1139s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 1139s Setting up libxcb-randr0:arm64 (1.15-1) ... 1139s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up openmpi-common (4.1.6-5ubuntu1) ... 1139s Setting up librdmacm1t64:arm64 (50.0-2) ... 1139s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 1139s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1139s Setting up libisl23:arm64 (0.26-3) ... 1139s Setting up libc-dev-bin (2.39-0ubuntu6) ... 1139s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 1139s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 1139s Setting up libpython3.12:arm64 (3.12.2-1) ... 1139s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up libsz2:arm64 (1.1.2-1) ... 1139s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 1139s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 1139s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 1139s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 1139s Setting up automake (1:1.16.5-1.3ubuntu1) ... 1139s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 1139s Setting up libfabric1:arm64 (1.17.0-3build1) ... 1139s Setting up liblapack3:arm64 (3.12.0-3) ... 1139s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 1139s Setting up cpp-12 (12.3.0-15ubuntu1) ... 1139s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 1140s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1140s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 1140s Setting up libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 1140s Setting up libnl-route-3-dev:arm64 (3.7.0-0.3) ... 1140s Setting up libltdl-dev:arm64 (2.4.7-7) ... 1140s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1140s Setting up libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 1140s Setting up libevent-dev (2.1.12-stable-9) ... 1140s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 1140s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1140s Setting up libc6-dev:arm64 (2.39-0ubuntu6) ... 1140s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 1140s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1140s Setting up libhsakmt1:arm64 (5.7.0-1) ... 1140s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 1140s Setting up libxft2:arm64 (2.3.6-1) ... 1140s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1140s Setting up libglx0:arm64 (1.7.0-1) ... 1140s Setting up libproj25:arm64 (9.3.1-1) ... 1140s Setting up libpmix2:arm64 (5.0.1-4) ... 1140s Setting up libtk8.6:arm64 (8.6.14-1) ... 1140s Setting up libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 1140s Setting up libtbb12:arm64 (2021.11.0-2ubuntu2) ... 1140s Setting up libibverbs-dev:arm64 (50.0-2) ... 1140s Setting up libcairo2:arm64 (1.18.0-1) ... 1140s Setting up libnuma-dev:arm64 (2.0.18-1) ... 1140s Setting up libgl1:arm64 (1.7.0-1) ... 1140s Setting up gcc-12 (12.3.0-15ubuntu1) ... 1140s Setting up libglew2.2:arm64 (2.2.0-4) ... 1140s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 1140s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 1140s Setting up libhsa-runtime64-1 (5.7.1-1) ... 1140s Setting up libtheora0:arm64 (1.1.1+dfsg.1-16.1) ... 1140s Setting up libhwloc-dev:arm64 (2.10.0-1) ... 1140s Setting up libpmix-dev:arm64 (5.0.1-4) ... 1140s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 1140s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 1140s Setting up libamdhip64-5 (5.2.3-12) ... 1140s Setting up libucx0:arm64 (1.16.0+ds-4) ... 1140s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 1140s Setting up libkim-api2:arm64 (2.3.0-1) ... 1140s Setting up libvtk9.1:arm64 (9.1.0+really9.1.0+dfsg2-7build1) ... 1140s Setting up libpnetcdf0d:arm64 (1.12.3-2) ... 1140s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 1140s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1140s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1140s Setting up mpi-default-bin (1.15) ... 1140s Setting up liblammps0:arm64 (20240207+dfsg-1) ... 1140s Setting up libopenmpi-dev:arm64 (4.1.6-5ubuntu1) ... 1140s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 1140s Setting up mpi-default-dev (1.15) ... 1140s Setting up liblammps-dev (20240207+dfsg-1) ... 1140s Setting up python3-lammps (20240207+dfsg-1) ... 1141s Setting up autopkgtest-satdep (0) ... 1141s Processing triggers for man-db (2.12.0-3) ... 1143s Processing triggers for install-info (7.1-3) ... 1144s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1158s (Reading database ... 82696 files and directories currently installed.) 1158s Removing autopkgtest-satdep (0) ... 1198s autopkgtest [08:27:35]: test command1: cd python/examples; python3 demo.py 1198s autopkgtest [08:27:35]: test command1: [----------------------- 1199s LAMMPS (7 Feb 2024 - Update 1) 1200s 1200s Python output: 1200s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 1200s Temperature from compute = 0.7683848148006238 1200s Energy from equal-style variable = -5.774392400140566 1200s Velocity component from atom-style variable = -0.1669643026996425 1200s Volume from get_thermo = 4738.213693437576 1200s Natoms from get_natoms = 4000 1200s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 1200s Changed x[0][0] via scatter_atoms = 17.651271530416228 1200s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1200s using 1 OpenMP thread(s) per MPI task 1200s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 1200s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1200s 1 by 1 by 1 MPI processor grid 1200s Created 4000 atoms 1200s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1200s create_atoms CPU = 0.004 seconds 1200s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1200s Neighbor list info ... 1200s update: every = 20 steps, delay = 0 steps, check = no 1200s max neighbors/atom: 2000, page size: 100000 1200s master list distance cutoff = 2.8 1200s ghost atom cutoff = 2.8 1200s binsize = 1.4, bins = 12 12 12 1200s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1200s (1) pair lj/cut, perpetual 1200s attributes: half, newton on 1200s pair build: half/bin/atomonly/newton 1200s stencil: half/bin/3d 1200s bin: standard 1200s Setting up Verlet run ... 1200s Unit style : lj 1200s Current step : 0 1200s Time step : 0.005 1200s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 1200s Step Temp E_pair E_mol TotEng Press 1200s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 1200s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 1200s Loop time of 0.947343 on 1 procs for 100 steps with 4000 atoms 1200s 1200s Performance: 45601.215 tau/day, 105.558 timesteps/s, 422.233 katom-step/s 1200s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads 1200s 1200s MPI task timing breakdown: 1200s Section | min time | avg time | max time |%varavg| %total 1200s --------------------------------------------------------------- 1200s Pair | 0.79842 | 0.79842 | 0.79842 | 0.0 | 84.28 1200s Neigh | 0.091091 | 0.091091 | 0.091091 | 0.0 | 9.62 1200s Comm | 0.024875 | 0.024875 | 0.024875 | 0.0 | 2.63 1200s Output | 0.00013459 | 0.00013459 | 0.00013459 | 0.0 | 0.01 1200s Modify | 0.030408 | 0.030408 | 0.030408 | 0.0 | 3.21 1200s Other | | 0.002415 | | | 0.25 1200s 1200s Nlocal: 4000 ave 4000 max 4000 min 1200s Histogram: 1 0 0 0 0 0 0 0 0 0 1200s Nghost: 5758 ave 5758 max 5758 min 1200s Histogram: 1 0 0 0 0 0 0 0 0 0 1200s Neighs: 150488 ave 150488 max 150488 min 1200s Histogram: 1 0 0 0 0 0 0 0 0 0 1200s 1200s Total # of neighbors = 150488 1200s Ave neighs/atom = 37.622 1200s Neighbor list builds = 5 1200s Dangerous builds not checked 1200s Total wall time: 0:00:01 1201s autopkgtest [08:27:38]: test command1: -----------------------] 1202s command1 PASS 1202s autopkgtest [08:27:39]: test command1: - - - - - - - - - - results - - - - - - - - - - 1202s autopkgtest [08:27:39]: @@@@@@@@@@@@@@@@@@@@ summary 1202s crack PASS 1202s dipole PASS 1202s ellipse PASS 1202s flow PASS 1202s friction PASS 1202s hugo PASS 1202s command1 PASS 1222s Creating nova instance adt-noble-arm64-lammps-20240325-080737-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 1222s Creating nova instance adt-noble-arm64-lammps-20240325-080737-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240325.img (UUID fbff6e39-d9aa-49f2-b0e3-b936ee7913ab)...