0s autopkgtest [11:55:58]: starting date: 2024-03-18 0s autopkgtest [11:55:58]: git checkout: 399018f5 lib/adt_testbed.py: Fix supression of warning messages from apt 0s autopkgtest [11:55:58]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.88bwyqqp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:openmpi,src:ampliconnoise,src:eztrace,src:gatb-core,src:gyoto,src:murasaki,src:pmix --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openmpi/4.1.6-7ubuntu1 ampliconnoise/1.29-10build2 eztrace/2.1-6 gatb-core/1.4.2+dfsg-13build1 gyoto/2.0.2-1.1build2 murasaki/1.68.6-13build5 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-lammps-20240318-115557-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 273s autopkgtest [12:00:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 274s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 275s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 275s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 275s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 275s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3727 kB] 277s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [654 kB] 277s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 277s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 277s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 277s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4127 kB] 278s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 278s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.3 kB] 278s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 280s Fetched 9270 kB in 5s (1940 kB/s) 280s Reading package lists... 283s Reading package lists... 284s Building dependency tree... 284s Reading state information... 284s Calculating upgrade... 285s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 285s Reading package lists... 286s Building dependency tree... 286s Reading state information... 286s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 287s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 287s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 287s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 287s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 289s Reading package lists... 289s Reading package lists... 290s Building dependency tree... 290s Reading state information... 291s Calculating upgrade... 291s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 291s Reading package lists... 292s Building dependency tree... 292s Reading state information... 294s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 295s autopkgtest [12:00:53]: testbed dpkg architecture: arm64 296s autopkgtest [12:00:54]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 297s autopkgtest [12:00:55]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 306s Get:1 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (dsc) [3139 B] 306s Get:2 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (tar) [153 MB] 306s Get:3 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1 (diff) [16.8 kB] 306s gpgv: Signature made Sun Feb 18 15:30:49 2024 UTC 306s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 306s gpgv: issuer "dparsons@debian.org" 306s gpgv: Can't check signature: No public key 306s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.dsc: no acceptable signature found 315s autopkgtest [12:01:13]: testing package lammps version 20240207+dfsg-1 315s autopkgtest [12:01:13]: build not needed 336s autopkgtest [12:01:34]: test crack: preparing testbed 349s Reading package lists... 349s Building dependency tree... 349s Reading state information... 350s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 350s Starting 2 pkgProblemResolver with broken count: 0 350s Done 350s Done 350s Starting pkgProblemResolver with broken count: 0 350s Starting 2 pkgProblemResolver with broken count: 0 350s Done 351s The following additional packages will be installed: 351s cpp-12 fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-12 351s gcc-12-base gfortran-12 lammps lammps-data libaec0 libamd-comgr2 351s libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 351s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 351s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7 libfabric1 351s libfftw3-double3 libfontconfig1 libgcc-12-dev libgfortran-12-dev 351s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 351s libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 351s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins libhwloc15 351s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 351s liblammps0 liblapack3 liblerc4 libllvm17 liblsan0 libmpc3 libmunge2 351s libnetcdf19 libnsl-dev libogg0 libopengl0 libopenmpi3t64 libpciaccess0 351s libpixman-1-0 libpmix2t64 libpnetcdf0d libproj25 libpython3.12 librdmacm1t64 351s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 351s libtheora0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libucx0 351s libvoro++1 libvtk9.1 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 351s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 351s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 351s libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev mpi-default-bin 351s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data rpcsvc-proto 351s x11-common 351s Suggested packages: 351s gcc-12-locales cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev 351s openkim-models glibc-doc manpages-dev libfftw3-bin libfftw3-dev glew-utils 351s proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples opencl-icd gfortran 351s | fortran-compiler 351s Recommended packages: 351s lammps-doc manpages manpages-dev libc-devtools libgl1-amber-dri 351s mesa-vulkan-drivers | vulkan-icd 351s The following NEW packages will be installed: 351s cpp-12 fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-12 351s gcc-12-base gfortran-12 lammps lammps-data libaec0 libamd-comgr2 351s libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 351s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 351s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7 libfabric1 351s libfftw3-double3 libfontconfig1 libgcc-12-dev libgfortran-12-dev 351s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 351s libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 351s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins libhwloc15 351s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 351s liblammps0 liblapack3 liblerc4 libllvm17 liblsan0 libmpc3 libmunge2 351s libnetcdf19 libnsl-dev libogg0 libopengl0 libopenmpi3t64 libpciaccess0 351s libpixman-1-0 libpmix2t64 libpnetcdf0d libproj25 libpython3.12 librdmacm1t64 351s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 351s libtheora0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libucx0 351s libvoro++1 libvtk9.1 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 351s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 351s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 351s libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev mpi-default-bin 351s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data rpcsvc-proto 351s x11-common 352s 0 upgraded, 116 newly installed, 0 to remove and 0 not upgraded. 352s 1 not fully installed or removed. 352s Need to get 173 MB of archives. 352s After this operation, 718 MB of additional disk space will be used. 352s Get:1 http://ftpmaster.internal/ubuntu noble/universe arm64 lammps-data all 20240207+dfsg-1 [9700 kB] 352s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 352s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 352s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB] 352s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 352s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 352s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 352s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 352s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 352s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12-base arm64 12.3.0-15ubuntu1 [45.5 kB] 352s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 352s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 352s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 cpp-12 arm64 12.3.0-15ubuntu1 [9585 kB] 353s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 353s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 353s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 353s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 353s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 353s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 353s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 353s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 353s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libgcc-12-dev arm64 12.3.0-15ubuntu1 [1157 kB] 353s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12 arm64 12.3.0-15ubuntu1 [19.1 MB] 353s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 353s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libgfortran-12-dev arm64 12.3.0-15ubuntu1 [471 kB] 353s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 353s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 353s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 353s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 353s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 353s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 353s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 353s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 gfortran-12 arm64 12.3.0-15ubuntu1 [10.1 MB] 354s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libkim-api2 arm64 2.3.0-1 [554 kB] 354s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 354s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 354s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 354s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 354s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 354s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB] 354s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 354s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 354s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 354s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 354s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 354s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 354s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix2t64 arm64 5.0.1-4.1 [655 kB] 354s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 355s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 355s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 355s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 355s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 355s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 355s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 355s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi3t64 arm64 4.1.6-7ubuntu1 [2463 kB] 355s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libpnetcdf0d arm64 1.12.3-2 [842 kB] 355s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 355s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 355s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 355s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 355s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 355s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 355s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 355s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 355s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 355s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 355s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 355s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 355s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 355s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 355s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 355s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 355s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 355s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 355s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 355s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 355s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 356s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 356s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 356s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 356s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2 [41.5 kB] 356s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4 [200 kB] 356s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 356s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libogg0 arm64 1.3.5-3 [22.1 kB] 356s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 356s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 356s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 356s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 356s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 356s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 356s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 356s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 356s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 356s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbmalloc2 arm64 2021.11.0-2ubuntu2 [43.8 kB] 356s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbbind-2-5 arm64 2021.11.0-2ubuntu2 [16.4 kB] 356s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbb12 arm64 2021.11.0-2ubuntu2 [79.9 kB] 356s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 356s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 356s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 356s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 356s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 357s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 357s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 357s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 357s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 357s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libtheora0 arm64 1.1.1+dfsg.1-16.1 [221 kB] 357s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 357s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 357s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 357s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 357s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libvtk9.1 arm64 9.1.0+really9.1.0+dfsg2-7build1 [19.2 MB] 358s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 liblammps0 arm64 20240207+dfsg-1 [6751 kB] 358s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-common all 4.1.6-7ubuntu1 [170 kB] 358s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-bin arm64 4.1.6-7ubuntu1 [113 kB] 358s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 358s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 lammps arm64 20240207+dfsg-1 [14.9 kB] 359s Fetched 173 MB in 7s (25.7 MB/s) 359s Selecting previously unselected package lammps-data. 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 359s Preparing to unpack .../000-lammps-data_20240207+dfsg-1_all.deb ... 359s Unpacking lammps-data (20240207+dfsg-1) ... 359s Selecting previously unselected package libblas3:arm64. 359s Preparing to unpack .../001-libblas3_3.12.0-3_arm64.deb ... 359s Unpacking libblas3:arm64 (3.12.0-3) ... 359s Selecting previously unselected package libgomp1:arm64. 360s Preparing to unpack .../002-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libfftw3-double3:arm64. 360s Preparing to unpack .../003-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ... 360s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 360s Selecting previously unselected package libaec0:arm64. 360s Preparing to unpack .../004-libaec0_1.1.2-1_arm64.deb ... 360s Unpacking libaec0:arm64 (1.1.2-1) ... 360s Selecting previously unselected package libsz2:arm64. 360s Preparing to unpack .../005-libsz2_1.1.2-1_arm64.deb ... 360s Unpacking libsz2:arm64 (1.1.2-1) ... 360s Selecting previously unselected package libhdf5-103-1:arm64. 360s Preparing to unpack .../006-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 360s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 360s Selecting previously unselected package libjpeg-turbo8:arm64. 360s Preparing to unpack .../007-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 360s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 360s Selecting previously unselected package libjpeg8:arm64. 360s Preparing to unpack .../008-libjpeg8_8c-2ubuntu11_arm64.deb ... 360s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 360s Selecting previously unselected package gcc-12-base:arm64. 360s Preparing to unpack .../009-gcc-12-base_12.3.0-15ubuntu1_arm64.deb ... 360s Unpacking gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 360s Selecting previously unselected package libisl23:arm64. 360s Preparing to unpack .../010-libisl23_0.26-3_arm64.deb ... 360s Unpacking libisl23:arm64 (0.26-3) ... 360s Selecting previously unselected package libmpc3:arm64. 360s Preparing to unpack .../011-libmpc3_1.3.1-1_arm64.deb ... 360s Unpacking libmpc3:arm64 (1.3.1-1) ... 360s Selecting previously unselected package cpp-12. 360s Preparing to unpack .../012-cpp-12_12.3.0-15ubuntu1_arm64.deb ... 360s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 361s Selecting previously unselected package libcc1-0:arm64. 361s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 361s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 361s Selecting previously unselected package libitm1:arm64. 361s Preparing to unpack .../014-libitm1_14-20240303-1ubuntu1_arm64.deb ... 361s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 361s Selecting previously unselected package libatomic1:arm64. 361s Preparing to unpack .../015-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 361s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 361s Selecting previously unselected package libasan8:arm64. 361s Preparing to unpack .../016-libasan8_14-20240303-1ubuntu1_arm64.deb ... 361s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 361s Selecting previously unselected package liblsan0:arm64. 361s Preparing to unpack .../017-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 361s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 361s Selecting previously unselected package libtsan2:arm64. 361s Preparing to unpack .../018-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 361s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 361s Selecting previously unselected package libubsan1:arm64. 361s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 361s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 361s Selecting previously unselected package libhwasan0:arm64. 361s Preparing to unpack .../020-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 361s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 361s Selecting previously unselected package libgcc-12-dev:arm64. 362s Preparing to unpack .../021-libgcc-12-dev_12.3.0-15ubuntu1_arm64.deb ... 362s Unpacking libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 362s Selecting previously unselected package gcc-12. 362s Preparing to unpack .../022-gcc-12_12.3.0-15ubuntu1_arm64.deb ... 362s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 362s Selecting previously unselected package libgfortran5:arm64. 362s Preparing to unpack .../023-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 362s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 362s Selecting previously unselected package libgfortran-12-dev:arm64. 362s Preparing to unpack .../024-libgfortran-12-dev_12.3.0-15ubuntu1_arm64.deb ... 362s Unpacking libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 362s Selecting previously unselected package libc-dev-bin. 362s Preparing to unpack .../025-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 362s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 362s Selecting previously unselected package linux-libc-dev:arm64. 362s Preparing to unpack .../026-linux-libc-dev_6.8.0-11.11_arm64.deb ... 362s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 362s Selecting previously unselected package libcrypt-dev:arm64. 363s Preparing to unpack .../027-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 363s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 363s Selecting previously unselected package libtirpc-dev:arm64. 363s Preparing to unpack .../028-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 363s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 363s Selecting previously unselected package libnsl-dev:arm64. 363s Preparing to unpack .../029-libnsl-dev_1.3.0-3_arm64.deb ... 363s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 363s Selecting previously unselected package rpcsvc-proto. 363s Preparing to unpack .../030-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 363s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 363s Selecting previously unselected package libc6-dev:arm64. 363s Preparing to unpack .../031-libc6-dev_2.39-0ubuntu2_arm64.deb ... 363s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 363s Selecting previously unselected package gfortran-12. 363s Preparing to unpack .../032-gfortran-12_12.3.0-15ubuntu1_arm64.deb ... 363s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 363s Selecting previously unselected package libkim-api2:arm64. 363s Preparing to unpack .../033-libkim-api2_2.3.0-1_arm64.deb ... 364s Unpacking libkim-api2:arm64 (2.3.0-1) ... 364s Selecting previously unselected package liblapack3:arm64. 364s Preparing to unpack .../034-liblapack3_3.12.0-3_arm64.deb ... 364s Unpacking liblapack3:arm64 (3.12.0-3) ... 364s Selecting previously unselected package libhdf5-hl-100:arm64. 364s Preparing to unpack .../035-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 364s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 364s Selecting previously unselected package libnetcdf19:arm64. 364s Preparing to unpack .../036-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 364s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 364s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 364s Preparing to unpack .../037-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 364s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 364s Selecting previously unselected package librdmacm1t64:arm64. 364s Preparing to unpack .../038-librdmacm1t64_50.0-2_arm64.deb ... 364s Unpacking librdmacm1t64:arm64 (50.0-2) ... 364s Selecting previously unselected package libfabric1:arm64. 364s Preparing to unpack .../039-libfabric1_1.17.0-3_arm64.deb ... 364s Unpacking libfabric1:arm64 (1.17.0-3) ... 364s Selecting previously unselected package libhwloc15:arm64. 364s Preparing to unpack .../040-libhwloc15_2.10.0-1_arm64.deb ... 364s Unpacking libhwloc15:arm64 (2.10.0-1) ... 364s Selecting previously unselected package libmunge2:arm64. 364s Preparing to unpack .../041-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 364s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 364s Selecting previously unselected package libpciaccess0:arm64. 364s Preparing to unpack .../042-libpciaccess0_0.17-3_arm64.deb ... 364s Unpacking libpciaccess0:arm64 (0.17-3) ... 365s Selecting previously unselected package libxnvctrl0:arm64. 365s Preparing to unpack .../043-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 365s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 365s Selecting previously unselected package ocl-icd-libopencl1:arm64. 365s Preparing to unpack .../044-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 365s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 365s Selecting previously unselected package libhwloc-plugins:arm64. 365s Preparing to unpack .../045-libhwloc-plugins_2.10.0-1_arm64.deb ... 365s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 365s Selecting previously unselected package libpmix2t64:arm64. 365s Preparing to unpack .../046-libpmix2t64_5.0.1-4.1_arm64.deb ... 365s Unpacking libpmix2t64:arm64 (5.0.1-4.1) ... 365s Selecting previously unselected package libllvm17:arm64. 365s Preparing to unpack .../047-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 365s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 365s Selecting previously unselected package libamd-comgr2:arm64. 365s Preparing to unpack .../048-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 365s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 366s Selecting previously unselected package libdrm-amdgpu1:arm64. 366s Preparing to unpack .../049-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 366s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 366s Selecting previously unselected package libhsakmt1:arm64. 366s Preparing to unpack .../050-libhsakmt1_5.7.0-1_arm64.deb ... 366s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 366s Selecting previously unselected package libhsa-runtime64-1. 366s Preparing to unpack .../051-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 366s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 366s Selecting previously unselected package libamdhip64-5. 366s Preparing to unpack .../052-libamdhip64-5_5.2.3-12_arm64.deb ... 366s Unpacking libamdhip64-5 (5.2.3-12) ... 366s Selecting previously unselected package libucx0:arm64. 366s Preparing to unpack .../053-libucx0_1.16.0+ds-4_arm64.deb ... 366s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 366s Selecting previously unselected package libopenmpi3t64:arm64. 366s Preparing to unpack .../054-libopenmpi3t64_4.1.6-7ubuntu1_arm64.deb ... 366s Unpacking libopenmpi3t64:arm64 (4.1.6-7ubuntu1) ... 366s Selecting previously unselected package libpnetcdf0d:arm64. 366s Preparing to unpack .../055-libpnetcdf0d_1.12.3-2_arm64.deb ... 366s Unpacking libpnetcdf0d:arm64 (1.12.3-2) ... 366s Selecting previously unselected package libpython3.12:arm64. 367s Preparing to unpack .../056-libpython3.12_3.12.2-1_arm64.deb ... 367s Unpacking libpython3.12:arm64 (3.12.2-1) ... 367s Selecting previously unselected package libvoro++1. 367s Preparing to unpack .../057-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 367s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 367s Selecting previously unselected package libdouble-conversion3:arm64. 367s Preparing to unpack .../058-libdouble-conversion3_3.3.0-1_arm64.deb ... 367s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 367s Selecting previously unselected package libglvnd0:arm64. 367s Preparing to unpack .../059-libglvnd0_1.7.0-1_arm64.deb ... 367s Unpacking libglvnd0:arm64 (1.7.0-1) ... 367s Selecting previously unselected package libglapi-mesa:arm64. 367s Preparing to unpack .../060-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 367s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 367s Selecting previously unselected package libx11-xcb1:arm64. 368s Preparing to unpack .../061-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 368s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 368s Selecting previously unselected package libxcb-dri2-0:arm64. 368s Preparing to unpack .../062-libxcb-dri2-0_1.15-1_arm64.deb ... 368s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 368s Selecting previously unselected package libxcb-dri3-0:arm64. 368s Preparing to unpack .../063-libxcb-dri3-0_1.15-1_arm64.deb ... 368s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 368s Selecting previously unselected package libxcb-glx0:arm64. 368s Preparing to unpack .../064-libxcb-glx0_1.15-1_arm64.deb ... 368s Unpacking libxcb-glx0:arm64 (1.15-1) ... 368s Selecting previously unselected package libxcb-present0:arm64. 368s Preparing to unpack .../065-libxcb-present0_1.15-1_arm64.deb ... 368s Unpacking libxcb-present0:arm64 (1.15-1) ... 368s Selecting previously unselected package libxcb-randr0:arm64. 369s Preparing to unpack .../066-libxcb-randr0_1.15-1_arm64.deb ... 369s Unpacking libxcb-randr0:arm64 (1.15-1) ... 369s Selecting previously unselected package libxcb-shm0:arm64. 369s Preparing to unpack .../067-libxcb-shm0_1.15-1_arm64.deb ... 369s Unpacking libxcb-shm0:arm64 (1.15-1) ... 369s Selecting previously unselected package libxcb-sync1:arm64. 369s Preparing to unpack .../068-libxcb-sync1_1.15-1_arm64.deb ... 369s Unpacking libxcb-sync1:arm64 (1.15-1) ... 369s Selecting previously unselected package libxcb-xfixes0:arm64. 369s Preparing to unpack .../069-libxcb-xfixes0_1.15-1_arm64.deb ... 369s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 369s Selecting previously unselected package libxfixes3:arm64. 369s Preparing to unpack .../070-libxfixes3_1%3a6.0.0-2_arm64.deb ... 369s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 369s Selecting previously unselected package libxshmfence1:arm64. 369s Preparing to unpack .../071-libxshmfence1_1.3-1build4_arm64.deb ... 369s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 369s Selecting previously unselected package libxxf86vm1:arm64. 370s Preparing to unpack .../072-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 370s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 370s Selecting previously unselected package libvulkan1:arm64. 371s Preparing to unpack .../073-libvulkan1_1.3.275.0-1_arm64.deb ... 371s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 371s Selecting previously unselected package libdrm-nouveau2:arm64. 371s Preparing to unpack .../074-libdrm-nouveau2_2.4.120-2_arm64.deb ... 371s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 371s Selecting previously unselected package libdrm-radeon1:arm64. 371s Preparing to unpack .../075-libdrm-radeon1_2.4.120-2_arm64.deb ... 371s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 371s Selecting previously unselected package libgl1-mesa-dri:arm64. 371s Preparing to unpack .../076-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 371s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 372s Selecting previously unselected package libglx-mesa0:arm64. 372s Preparing to unpack .../077-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 372s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 372s Selecting previously unselected package libglx0:arm64. 372s Preparing to unpack .../078-libglx0_1.7.0-1_arm64.deb ... 372s Unpacking libglx0:arm64 (1.7.0-1) ... 372s Selecting previously unselected package libgl1:arm64. 372s Preparing to unpack .../079-libgl1_1.7.0-1_arm64.deb ... 372s Unpacking libgl1:arm64 (1.7.0-1) ... 372s Selecting previously unselected package libgl2ps1.4. 372s Preparing to unpack .../080-libgl2ps1.4_1.4.2+dfsg1-2_arm64.deb ... 372s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 372s Selecting previously unselected package libglew2.2:arm64. 372s Preparing to unpack .../081-libglew2.2_2.2.0-4_arm64.deb ... 373s Unpacking libglew2.2:arm64 (2.2.0-4) ... 373s Selecting previously unselected package libjsoncpp25:arm64. 373s Preparing to unpack .../082-libjsoncpp25_1.9.5-6_arm64.deb ... 373s Unpacking libjsoncpp25:arm64 (1.9.5-6) ... 373s Selecting previously unselected package libogg0:arm64. 373s Preparing to unpack .../083-libogg0_1.3.5-3_arm64.deb ... 373s Unpacking libogg0:arm64 (1.3.5-3) ... 373s Selecting previously unselected package libopengl0:arm64. 373s Preparing to unpack .../084-libopengl0_1.7.0-1_arm64.deb ... 373s Unpacking libopengl0:arm64 (1.7.0-1) ... 373s Selecting previously unselected package proj-data. 373s Preparing to unpack .../085-proj-data_9.3.1-1_all.deb ... 373s Unpacking proj-data (9.3.1-1) ... 373s Selecting previously unselected package libdeflate0:arm64. 373s Preparing to unpack .../086-libdeflate0_1.19-1_arm64.deb ... 373s Unpacking libdeflate0:arm64 (1.19-1) ... 373s Selecting previously unselected package libjbig0:arm64. 373s Preparing to unpack .../087-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 373s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 373s Selecting previously unselected package liblerc4:arm64. 373s Preparing to unpack .../088-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 373s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 373s Selecting previously unselected package libsharpyuv0:arm64. 373s Preparing to unpack .../089-libsharpyuv0_1.3.2-0.4_arm64.deb ... 373s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 373s Selecting previously unselected package libwebp7:arm64. 374s Preparing to unpack .../090-libwebp7_1.3.2-0.4_arm64.deb ... 374s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 374s Selecting previously unselected package libtiff6:arm64. 374s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 374s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 374s Selecting previously unselected package libproj25:arm64. 374s Preparing to unpack .../092-libproj25_9.3.1-1_arm64.deb ... 374s Unpacking libproj25:arm64 (9.3.1-1) ... 374s Selecting previously unselected package libtbbmalloc2:arm64. 374s Preparing to unpack .../093-libtbbmalloc2_2021.11.0-2ubuntu2_arm64.deb ... 374s Unpacking libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ... 374s Selecting previously unselected package libtbbbind-2-5:arm64. 374s Preparing to unpack .../094-libtbbbind-2-5_2021.11.0-2ubuntu2_arm64.deb ... 374s Unpacking libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 374s Selecting previously unselected package libtbb12:arm64. 374s Preparing to unpack .../095-libtbb12_2021.11.0-2ubuntu2_arm64.deb ... 374s Unpacking libtbb12:arm64 (2021.11.0-2ubuntu2) ... 374s Selecting previously unselected package libtcl8.6:arm64. 374s Preparing to unpack .../096-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 374s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 374s Selecting previously unselected package fonts-dejavu-mono. 374s Preparing to unpack .../097-fonts-dejavu-mono_2.37-8_all.deb ... 374s Unpacking fonts-dejavu-mono (2.37-8) ... 374s Selecting previously unselected package fonts-dejavu-core. 374s Preparing to unpack .../098-fonts-dejavu-core_2.37-8_all.deb ... 374s Unpacking fonts-dejavu-core (2.37-8) ... 374s Selecting previously unselected package fontconfig-config. 374s Preparing to unpack .../099-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 375s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 375s Selecting previously unselected package libfontconfig1:arm64. 375s Preparing to unpack .../100-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 375s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 375s Selecting previously unselected package libpixman-1-0:arm64. 375s Preparing to unpack .../101-libpixman-1-0_0.42.2-1_arm64.deb ... 375s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 375s Selecting previously unselected package libxcb-render0:arm64. 375s Preparing to unpack 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376s Selecting previously unselected package libxss1:arm64. 376s Preparing to unpack .../108-libxss1_1%3a1.2.3-1build2_arm64.deb ... 376s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 376s Selecting previously unselected package libtk8.6:arm64. 376s Preparing to unpack .../109-libtk8.6_8.6.13-2_arm64.deb ... 376s Unpacking libtk8.6:arm64 (8.6.13-2) ... 376s Selecting previously unselected package libvtk9.1:arm64. 376s Preparing to unpack .../110-libvtk9.1_9.1.0+really9.1.0+dfsg2-7build1_arm64.deb ... 376s Unpacking libvtk9.1:arm64 (9.1.0+really9.1.0+dfsg2-7build1) ... 377s Selecting previously unselected package liblammps0:arm64. 377s Preparing to unpack .../111-liblammps0_20240207+dfsg-1_arm64.deb ... 377s Unpacking liblammps0:arm64 (20240207+dfsg-1) ... 377s Selecting previously unselected package openmpi-common. 378s Preparing to unpack .../112-openmpi-common_4.1.6-7ubuntu1_all.deb ... 378s Unpacking openmpi-common (4.1.6-7ubuntu1) ... 378s Selecting previously unselected package openmpi-bin. 378s Preparing to unpack .../113-openmpi-bin_4.1.6-7ubuntu1_arm64.deb ... 378s Unpacking openmpi-bin (4.1.6-7ubuntu1) ... 378s Selecting previously unselected package mpi-default-bin. 378s Preparing to unpack .../114-mpi-default-bin_1.15_arm64.deb ... 378s Unpacking mpi-default-bin (1.15) ... 378s Selecting previously unselected package lammps. 378s Preparing to unpack .../115-lammps_20240207+dfsg-1_arm64.deb ... 378s Unpacking lammps (20240207+dfsg-1) ... 378s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 378s Setting up libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ... 378s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 378s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 378s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 378s Setting up libpciaccess0:arm64 (0.17-3) ... 378s Setting up libdouble-conversion3:arm64 (3.3.0-1) ... 378s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 378s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 378s Setting up libogg0:arm64 (1.3.5-3) ... 378s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 378s Setting up proj-data (9.3.1-1) ... 378s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 378s Setting up lammps-data (20240207+dfsg-1) ... 378s Setting up libxcb-render0:arm64 (1.15-1) ... 378s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 378s Setting up libglvnd0:arm64 (1.7.0-1) ... 378s Setting up libxcb-glx0:arm64 (1.15-1) ... 378s Setting up x11-common (1:7.7+23ubuntu2) ... 380s Setting up libdeflate0:arm64 (1.19-1) ... 380s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 380s Setting up libxcb-shm0:arm64 (1.15-1) ... 380s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 380s Setting up libaec0:arm64 (1.1.2-1) ... 380s Setting up libopengl0:arm64 (1.7.0-1) ... 380s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 380s Setting up gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 380s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 380s Setting up libxcb-present0:arm64 (1.15-1) ... 380s Setting up libblas3:arm64 (3.12.0-3) ... 380s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 380s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 380s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 380s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 380s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 380s Setting up libxcb-sync1:arm64 (1.15-1) ... 380s Setting up fonts-dejavu-mono (2.37-8) ... 380s Setting up libhwloc15:arm64 (2.10.0-1) ... 380s Setting up libmpc3:arm64 (1.3.1-1) ... 380s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 380s Setting up libjsoncpp25:arm64 (1.9.5-6) ... 380s Setting up fonts-dejavu-core (2.37-8) ... 380s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 380s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 380s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 380s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 380s Setting up libwebp7:arm64 (1.3.2-0.4) ... 380s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 380s Setting up libnsl-dev:arm64 (1.3.0-3) ... 380s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 380s Setting up libxshmfence1:arm64 (1.3-1build4) ... 380s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 380s Setting up libxcb-randr0:arm64 (1.15-1) ... 380s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 380s Setting up openmpi-common (4.1.6-7ubuntu1) ... 380s Setting up librdmacm1t64:arm64 (50.0-2) ... 380s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 380s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libisl23:arm64 (0.26-3) ... 380s Setting up libc-dev-bin (2.39-0ubuntu2) ... 380s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 380s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 380s Setting up libpython3.12:arm64 (3.12.2-1) ... 380s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 380s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libsz2:arm64 (1.1.2-1) ... 380s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 380s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 380s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 380s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 380s Setting up libfabric1:arm64 (1.17.0-3) ... 380s Setting up liblapack3:arm64 (3.12.0-3) ... 380s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 380s Setting up cpp-12 (12.3.0-15ubuntu1) ... 380s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 380s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 380s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 380s Setting up libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 380s Setting up libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 380s Setting up libpmix2t64:arm64 (5.0.1-4.1) ... 380s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 380s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 380s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 380s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 380s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 380s Setting up libhsakmt1:arm64 (5.7.0-1) ... 380s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 380s Setting up libxft2:arm64 (2.3.6-1) ... 380s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 380s Setting up libglx0:arm64 (1.7.0-1) ... 380s Setting up libproj25:arm64 (9.3.1-1) ... 380s Setting up libtk8.6:arm64 (8.6.13-2) ... 380s Setting up libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 380s Setting up libtbb12:arm64 (2021.11.0-2ubuntu2) ... 380s Setting up libcairo2:arm64 (1.18.0-1) ... 380s Setting up libgl1:arm64 (1.7.0-1) ... 380s Setting up gcc-12 (12.3.0-15ubuntu1) ... 380s Setting up libglew2.2:arm64 (2.2.0-4) ... 380s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 380s Setting up libhsa-runtime64-1 (5.7.1-1) ... 380s Setting up libtheora0:arm64 (1.1.1+dfsg.1-16.1) ... 380s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 380s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 380s Setting up libamdhip64-5 (5.2.3-12) ... 380s Setting up libucx0:arm64 (1.16.0+ds-4) ... 380s Setting up libkim-api2:arm64 (2.3.0-1) ... 380s Setting up libopenmpi3t64:arm64 (4.1.6-7ubuntu1) ... 380s Setting up libpnetcdf0d:arm64 (1.12.3-2) ... 380s Setting up openmpi-bin (4.1.6-7ubuntu1) ... 380s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 380s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 380s Setting up mpi-default-bin (1.15) ... 380s Setting up libvtk9.1:arm64 (9.1.0+really9.1.0+dfsg2-7build1) ... 380s Setting up liblammps0:arm64 (20240207+dfsg-1) ... 380s Setting up lammps (20240207+dfsg-1) ... 380s Setting up autopkgtest-satdep (0) ... 380s Processing triggers for man-db (2.12.0-3) ... 381s Processing triggers for libc-bin (2.39-0ubuntu2) ... 388s (Reading database ... 78919 files and directories currently installed.) 388s Removing autopkgtest-satdep (0) ... 389s autopkgtest [12:02:27]: test crack: [----------------------- 391s LAMMPS (7 Feb 2024 - Update 1) 391s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 391s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 391s using 1 OpenMP thread(s) per MPI task 391s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 391s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 391s 2 by 1 by 1 MPI processor grid 391s Created 8141 atoms 391s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 391s create_atoms CPU = 0.001 seconds 391s 302 atoms in group lower 391s 302 atoms in group upper 391s 604 atoms in group boundary 391s 7537 atoms in group mobile 391s 841 atoms in group leftupper 391s 841 atoms in group leftlower 391s Setting atom values ... 391s 841 settings made for type 391s Setting atom values ... 391s 841 settings made for type 391s Setting atom values ... 391s 302 settings made for type 391s Setting atom values ... 391s 302 settings made for type 391s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 391s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 391s Neighbor list info ... 391s update: every = 1 steps, delay = 5 steps, check = yes 391s max neighbors/atom: 2000, page size: 100000 391s master list distance cutoff = 2.8 391s ghost atom cutoff = 2.8 391s binsize = 1.4, bins = 80 56 1 391s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 391s (1) pair lj/cut, perpetual 391s attributes: half, newton on 391s pair build: half/bin/atomonly/newton 391s stencil: half/bin/2d 391s bin: standard 391s Setting up Verlet run ... 391s Unit style : lj 391s Current step : 0 391s Time step : 0.003 391s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 391s Step Temp E_pair E_mol TotEng Press Volume 391s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 391s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 391s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 391s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 391s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 392s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 392s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 392s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 392s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 393s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 393s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 393s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 393s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 393s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 393s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 393s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 393s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 393s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 393s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 394s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 394s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 394s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 394s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 394s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 394s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 394s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 394s Loop time of 3.40842 on 2 procs for 5000 steps with 8141 atoms 394s 394s Performance: 380234.932 tau/day, 1466.956 timesteps/s, 11.942 Matom-step/s 394s 94.2% CPU use with 2 MPI tasks x 1 OpenMP threads 394s 394s MPI task timing breakdown: 394s Section | min time | avg time | max time |%varavg| %total 394s --------------------------------------------------------------- 394s Pair | 2.2214 | 2.2575 | 2.2936 | 2.4 | 66.23 394s Neigh | 0.10692 | 0.10777 | 0.10862 | 0.3 | 3.16 394s Comm | 0.38336 | 0.41957 | 0.45578 | 5.6 | 12.31 394s Output | 0.027265 | 0.033903 | 0.040541 | 3.6 | 0.99 394s Modify | 0.22305 | 0.23292 | 0.2428 | 2.0 | 6.83 394s Other | | 0.3567 | | | 10.47 394s 394s Nlocal: 4070.5 ave 4085 max 4056 min 394s Histogram: 1 0 0 0 0 0 0 0 0 1 394s Nghost: 207 ave 208 max 206 min 394s Histogram: 1 0 0 0 0 0 0 0 0 1 394s Neighs: 35700 ave 35927 max 35473 min 394s Histogram: 1 0 0 0 0 0 0 0 0 1 394s 394s Total # of neighbors = 71400 394s Ave neighs/atom = 8.7704213 394s Neighbor list builds = 106 394s Dangerous builds = 0 394s Total wall time: 0:00:03 397s LAMMPS (7 Feb 2024 - Update 1) 402s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 402s using 1 OpenMP thread(s) per MPI task 402s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 402s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 402s 1 by 1 by 1 MPI processor grid 402s Created 8141 atoms 402s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 402s create_atoms CPU = 0.002 seconds 402s 302 atoms in group lower 402s 302 atoms in group upper 402s 604 atoms in group boundary 402s 7537 atoms in group mobile 402s 841 atoms in group leftupper 402s 841 atoms in group leftlower 402s Setting atom values ... 402s 841 settings made for type 402s Setting atom values ... 402s 841 settings made for type 402s Setting atom values ... 402s 302 settings made for type 402s Setting atom values ... 402s 302 settings made for type 402s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 402s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 402s Neighbor list info ... 402s update: every = 1 steps, delay = 5 steps, check = yes 402s max neighbors/atom: 2000, page size: 100000 402s master list distance cutoff = 2.8 402s ghost atom cutoff = 2.8 402s binsize = 1.4, bins = 80 56 1 402s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 402s (1) pair lj/cut, perpetual 402s attributes: half, newton on 402s pair build: half/bin/atomonly/newton 402s stencil: half/bin/2d 402s bin: standard 402s Setting up Verlet run ... 402s Unit style : lj 402s Current step : 0 402s Time step : 0.003 402s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 402s Step Temp E_pair E_mol TotEng Press Volume 402s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 402s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 402s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 402s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 402s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 402s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 402s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 402s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 402s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 402s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 402s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 402s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 402s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 402s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 402s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 402s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 402s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 402s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 402s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 402s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 402s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 402s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 402s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 402s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 402s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 402s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 402s Loop time of 5.10096 on 1 procs for 5000 steps with 8141 atoms 402s 402s Performance: 254070.067 tau/day, 980.209 timesteps/s, 7.980 Matom-step/s 402s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 402s 402s MPI task timing breakdown: 402s Section | min time | avg time | max time |%varavg| %total 402s --------------------------------------------------------------- 402s Pair | 4.3459 | 4.3459 | 4.3459 | 0.0 | 85.20 402s Neigh | 0.18961 | 0.18961 | 0.18961 | 0.0 | 3.72 402s Comm | 0.0037164 | 0.0037164 | 0.0037164 | 0.0 | 0.07 402s Output | 0.0015773 | 0.0015773 | 0.0015773 | 0.0 | 0.03 402s Modify | 0.44846 | 0.44846 | 0.44846 | 0.0 | 8.79 402s Other | | 0.1117 | | | 2.19 402s 402s Nlocal: 8141 ave 8141 max 8141 min 402s Histogram: 1 0 0 0 0 0 0 0 0 0 402s Nghost: 0 ave 0 max 0 min 402s Histogram: 1 0 0 0 0 0 0 0 0 0 402s Neighs: 71389 ave 71389 max 71389 min 402s Histogram: 1 0 0 0 0 0 0 0 0 0 402s 402s Total # of neighbors = 71389 402s Ave neighs/atom = 8.7690701 402s Neighbor list builds = 100 402s Dangerous builds = 0 402s Total wall time: 0:00:05 402s run: OK 403s autopkgtest [12:02:41]: test crack: -----------------------] 403s crack PASS 403s autopkgtest [12:02:41]: test crack: - - - - - - - - - - results - - - - - - - - - - 404s autopkgtest [12:02:42]: test dipole: preparing testbed 416s Reading package lists... 416s Building dependency tree... 416s Reading state information... 416s Starting pkgProblemResolver with broken count: 0 417s Starting 2 pkgProblemResolver with broken count: 0 417s Done 420s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 420s 1 not fully installed or removed. 420s After this operation, 0 B of additional disk space will be used. 420s Setting up autopkgtest-satdep (0) ... 421s (Reading database ... 78919 files and directories currently installed.) 421s Removing autopkgtest-satdep (0) ... 422s autopkgtest [12:03:00]: test dipole: [----------------------- 424s LAMMPS (7 Feb 2024 - Update 1) 424s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 424s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 424s using 1 OpenMP thread(s) per MPI task 424s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 424s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 424s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 424s 2 by 1 by 1 MPI processor grid 424s Created 200 atoms 424s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 424s create_atoms CPU = 0.001 seconds 424s Setting atom values ... 424s 200 settings made for mass 424s Setting atom values ... 424s 200 settings made for dipole/random 424s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 424s Neighbor list info ... 424s update: every = 1 steps, delay = 0 steps, check = yes 424s max neighbors/atom: 2000, page size: 100000 424s master list distance cutoff = 2.8 424s ghost atom cutoff = 2.8 424s binsize = 1.4, bins = 13 13 2 424s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 424s (1) pair lj/cut/dipole/cut, perpetual 424s attributes: half, newton on 424s pair build: half/bin/atomonly/newton 424s stencil: half/bin/2d 424s bin: standard 424s Setting up Verlet run ... 424s Unit style : lj 424s Current step : 0 424s Time step : 0.005 424s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 424s Step Temp E_pair c_erot TotEng Press 424s 0 0 -2.0965715 0 -2.0965715 -2.4759659 424s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 424s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 424s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 424s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 424s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 424s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 424s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 424s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 424s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 424s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 424s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 424s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 424s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 424s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 424s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 424s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 424s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 425s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 425s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 425s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 425s Loop time of 0.489859 on 2 procs for 10000 steps with 200 atoms 425s 425s Performance: 8818869.200 tau/day, 20414.049 timesteps/s, 4.083 Matom-step/s 425s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 425s 425s MPI task timing breakdown: 425s Section | min time | avg time | max time |%varavg| %total 425s --------------------------------------------------------------- 425s Pair | 0.24376 | 0.27295 | 0.30214 | 5.6 | 55.72 425s Neigh | 0.014291 | 0.015589 | 0.016887 | 1.0 | 3.18 425s Comm | 0.12673 | 0.14142 | 0.1561 | 3.9 | 28.87 425s Output | 0.00051233 | 0.001476 | 0.0024398 | 2.5 | 0.30 425s Modify | 0.022955 | 0.025604 | 0.028252 | 1.7 | 5.23 425s Other | | 0.03283 | | | 6.70 425s 425s Nlocal: 100 ave 104 max 96 min 425s Histogram: 1 0 0 0 0 0 0 0 0 1 425s Nghost: 123.5 ave 124 max 123 min 425s Histogram: 1 0 0 0 0 0 0 0 0 1 425s Neighs: 820 ave 885 max 755 min 425s Histogram: 1 0 0 0 0 0 0 0 0 1 425s 425s Total # of neighbors = 1640 425s Ave neighs/atom = 8.2 425s Neighbor list builds = 697 425s Dangerous builds = 0 425s Total wall time: 0:00:00 425s LAMMPS (7 Feb 2024 - Update 1) 427s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 427s using 1 OpenMP thread(s) per MPI task 427s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 427s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 427s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 427s 1 by 1 by 1 MPI processor grid 427s Created 200 atoms 427s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 427s create_atoms CPU = 0.000 seconds 427s Setting atom values ... 427s 200 settings made for mass 427s Setting atom values ... 427s 200 settings made for dipole/random 427s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 427s Neighbor list info ... 427s update: every = 1 steps, delay = 0 steps, check = yes 427s max neighbors/atom: 2000, page size: 100000 427s master list distance cutoff = 2.8 427s ghost atom cutoff = 2.8 427s binsize = 1.4, bins = 13 13 2 427s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 427s (1) pair lj/cut/dipole/cut, perpetual 427s attributes: half, newton on 427s pair build: half/bin/atomonly/newton 427s stencil: half/bin/2d 427s bin: standard 427s Setting up Verlet run ... 427s Unit style : lj 427s Current step : 0 427s Time step : 0.005 427s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 427s Step Temp E_pair c_erot TotEng Press 427s 0 0 -2.0965715 0 -2.0965715 -2.4759659 427s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 427s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 427s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 427s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 427s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 427s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 427s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 427s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 427s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 427s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 427s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 427s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 427s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 427s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 427s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 427s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 427s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 427s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 427s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 427s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 427s Loop time of 0.9137 on 1 procs for 10000 steps with 200 atoms 427s 427s Performance: 4728031.253 tau/day, 10944.517 timesteps/s, 2.189 Matom-step/s 427s 93.7% CPU use with 1 MPI tasks x 1 OpenMP threads 427s 427s MPI task timing breakdown: 427s Section | min time | avg time | max time |%varavg| %total 427s --------------------------------------------------------------- 427s Pair | 0.60135 | 0.60135 | 0.60135 | 0.0 | 65.81 427s Neigh | 0.063408 | 0.063408 | 0.063408 | 0.0 | 6.94 427s Comm | 0.037317 | 0.037317 | 0.037317 | 0.0 | 4.08 427s Output | 0.091391 | 0.091391 | 0.091391 | 0.0 | 10.00 427s Modify | 0.053008 | 0.053008 | 0.053008 | 0.0 | 5.80 427s Other | | 0.06723 | | | 7.36 427s 427s Nlocal: 200 ave 200 max 200 min 427s Histogram: 1 0 0 0 0 0 0 0 0 0 427s Nghost: 155 ave 155 max 155 min 427s Histogram: 1 0 0 0 0 0 0 0 0 0 427s Neighs: 1664 ave 1664 max 1664 min 427s Histogram: 1 0 0 0 0 0 0 0 0 0 427s 427s Total # of neighbors = 1664 427s Ave neighs/atom = 8.32 427s Neighbor list builds = 697 427s Dangerous builds = 0 427s Total wall time: 0:00:00 427s run: OK 427s autopkgtest [12:03:05]: test dipole: -----------------------] 428s dipole PASS 428s autopkgtest [12:03:06]: test dipole: - - - - - - - - - - results - - - - - - - - - - 428s autopkgtest [12:03:06]: test ellipse: preparing testbed 433s Reading package lists... 434s Building dependency tree... 434s Reading state information... 434s Starting pkgProblemResolver with broken count: 0 434s Starting 2 pkgProblemResolver with broken count: 0 434s Done 435s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 435s 1 not fully installed or removed. 435s After this operation, 0 B of additional disk space will be used. 435s Setting up autopkgtest-satdep (0) ... 438s (Reading database ... 78919 files and directories currently installed.) 438s Removing autopkgtest-satdep (0) ... 439s autopkgtest [12:03:17]: test ellipse: [----------------------- 440s LAMMPS (7 Feb 2024 - Update 1) 440s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 440s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 440s using 1 OpenMP thread(s) per MPI task 440s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 440s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 440s 2 by 1 by 1 MPI processor grid 440s Created 400 atoms 440s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 440s create_atoms CPU = 0.000 seconds 440s Setting atom values ... 440s 29 settings made for type/fraction 440s Setting atom values ... 440s 371 settings made for mass 440s Setting atom values ... 440s 29 settings made for mass 440s Setting atom values ... 440s 371 settings made for shape 440s Setting atom values ... 440s 29 settings made for shape 440s Setting atom values ... 440s 400 settings made for quat/random 440s 371 atoms in group spheroid 440s 440s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 440s 440s Your simulation uses code contributions which should be cited: 440s - pair gayberne command: doi:10.1063/1.3058435 440s The log file lists these citations in BibTeX format. 440s 440s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 440s 440s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 440s Neighbor list info ... 440s update: every = 1 steps, delay = 0 steps, check = yes 440s max neighbors/atom: 2000, page size: 100000 440s master list distance cutoff = 4.8 440s ghost atom cutoff = 4.8 440s binsize = 2.4, bins = 59 59 3 440s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 440s (1) pair gayberne, perpetual 440s attributes: half, newton on 440s pair build: half/bin/atomonly/newton 440s stencil: half/bin/2d 440s bin: standard 440s Setting up Verlet run ... 440s Unit style : lj 440s Current step : 0 440s Time step : 0.002 440s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 440s Step c_rot E_pair TotEng Press Volume 440s 0 2.3158404 0 2.394 0.04788 20000 440s 100 1.7101139 0 1.7678302 0.034413192 20548.286 440s 200 2.3115592 0 2.3895743 0.04649702 20556.796 440s 300 1.831333 0 1.8931405 0.041256922 18354.646 440s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 440s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 440s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 440s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 440s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 440s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 440s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 440s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 440s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 440s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 440s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 440s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 440s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 440s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 440s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 440s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 440s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 440s Loop time of 0.337529 on 2 procs for 2000 steps with 400 atoms 440s 440s Performance: 1023912.626 tau/day, 5925.420 timesteps/s, 2.370 Matom-step/s 440s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 440s 440s MPI task timing breakdown: 440s Section | min time | avg time | max time |%varavg| %total 440s --------------------------------------------------------------- 440s Pair | 0.16633 | 0.18584 | 0.20534 | 4.5 | 55.06 440s Neigh | 0.010015 | 0.010071 | 0.010128 | 0.1 | 2.98 440s Comm | 0.028386 | 0.04774 | 0.067094 | 8.9 | 14.14 440s Output | 0.014243 | 0.014362 | 0.01448 | 0.1 | 4.25 440s Modify | 0.072553 | 0.073351 | 0.074149 | 0.3 | 21.73 440s Other | | 0.00617 | | | 1.83 440s 440s Nlocal: 200 ave 211 max 189 min 440s Histogram: 1 0 0 0 0 0 0 0 0 1 440s Nghost: 215 ave 217 max 213 min 440s Histogram: 1 0 0 0 0 0 0 0 0 1 440s Neighs: 1561 ave 1651 max 1471 min 440s Histogram: 1 0 0 0 0 0 0 0 0 1 440s 440s Total # of neighbors = 3122 440s Ave neighs/atom = 7.805 440s Neighbor list builds = 346 440s Dangerous builds = 0 440s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 440s Setting up Verlet run ... 440s Unit style : lj 440s Current step : 2000 440s Time step : 0.002 440s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 440s Step c_rot E_pair TotEng Press Volume 440s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 440s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 440s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 440s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 440s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 440s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 440s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 440s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 440s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 440s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 440s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 440s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 440s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 440s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 440s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 440s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 440s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 440s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 440s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 440s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 440s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 440s Loop time of 0.468766 on 2 procs for 2000 steps with 400 atoms 440s 440s Performance: 737255.058 tau/day, 4266.522 timesteps/s, 1.707 Matom-step/s 440s 96.2% CPU use with 2 MPI tasks x 1 OpenMP threads 440s 440s MPI task timing breakdown: 440s Section | min time | avg time | max time |%varavg| %total 440s --------------------------------------------------------------- 440s Pair | 0.23824 | 0.23939 | 0.24054 | 0.2 | 51.07 440s Neigh | 0.0025069 | 0.0028223 | 0.0031378 | 0.6 | 0.60 440s Comm | 0.035739 | 0.037116 | 0.038493 | 0.7 | 7.92 440s Output | 0.044689 | 0.044796 | 0.044904 | 0.1 | 9.56 440s Modify | 0.036532 | 0.040758 | 0.044985 | 2.1 | 8.69 440s Other | | 0.1039 | | | 22.16 440s 440s Nlocal: 200 ave 227 max 173 min 440s Histogram: 1 0 0 0 0 0 0 0 0 1 440s Nghost: 211 ave 219 max 203 min 440s Histogram: 1 0 0 0 0 0 0 0 0 1 440s Neighs: 1650.5 ave 1950 max 1351 min 440s Histogram: 1 0 0 0 0 0 0 0 0 1 440s 440s Total # of neighbors = 3301 440s Ave neighs/atom = 8.2525 440s Neighbor list builds = 49 440s Dangerous builds = 0 440s Total wall time: 0:00:00 441s LAMMPS (7 Feb 2024 - Update 1) 442s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 442s using 1 OpenMP thread(s) per MPI task 442s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 442s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 442s 1 by 1 by 1 MPI processor grid 442s Created 400 atoms 442s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 442s create_atoms CPU = 0.000 seconds 442s Setting atom values ... 442s 29 settings made for type/fraction 442s Setting atom values ... 442s 371 settings made for mass 442s Setting atom values ... 442s 29 settings made for mass 442s Setting atom values ... 442s 371 settings made for shape 442s Setting atom values ... 442s 29 settings made for shape 442s Setting atom values ... 442s 400 settings made for quat/random 442s 371 atoms in group spheroid 442s 442s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 442s 442s Your simulation uses code contributions which should be cited: 442s - pair gayberne command: doi:10.1063/1.3058435 442s The log file lists these citations in BibTeX format. 442s 442s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 442s 442s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 442s Neighbor list info ... 442s update: every = 1 steps, delay = 0 steps, check = yes 442s max neighbors/atom: 2000, page size: 100000 442s master list distance cutoff = 4.8 442s ghost atom cutoff = 4.8 442s binsize = 2.4, bins = 59 59 3 442s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 442s (1) pair gayberne, perpetual 442s attributes: half, newton on 442s pair build: half/bin/atomonly/newton 442s stencil: half/bin/2d 442s bin: standard 442s Setting up Verlet run ... 442s Unit style : lj 442s Current step : 0 442s Time step : 0.002 442s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 442s Step c_rot E_pair TotEng Press Volume 442s 0 2.3158404 0 2.394 0.04788 20000 442s 100 1.7101139 0 1.7678302 0.034413192 20548.286 442s 200 2.3115592 0 2.3895743 0.04649702 20556.796 442s 300 1.831333 0 1.8931405 0.041256922 18354.646 442s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 442s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 442s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 442s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 442s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 442s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 442s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 442s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 442s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 442s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 442s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 442s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 442s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 442s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 442s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 442s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 442s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 442s Loop time of 0.553171 on 1 procs for 2000 steps with 400 atoms 442s 442s Performance: 624761.196 tau/day, 3615.516 timesteps/s, 1.446 Matom-step/s 442s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 442s 442s MPI task timing breakdown: 442s Section | min time | avg time | max time |%varavg| %total 442s --------------------------------------------------------------- 442s Pair | 0.369 | 0.369 | 0.369 | 0.0 | 66.71 442s Neigh | 0.01981 | 0.01981 | 0.01981 | 0.0 | 3.58 442s Comm | 0.010644 | 0.010644 | 0.010644 | 0.0 | 1.92 442s Output | 0.019458 | 0.019458 | 0.019458 | 0.0 | 3.52 442s Modify | 0.12959 | 0.12959 | 0.12959 | 0.0 | 23.43 442s Other | | 0.004675 | | | 0.85 442s 442s Nlocal: 400 ave 400 max 400 min 442s Histogram: 1 0 0 0 0 0 0 0 0 0 442s Nghost: 276 ave 276 max 276 min 442s Histogram: 1 0 0 0 0 0 0 0 0 0 442s Neighs: 3122 ave 3122 max 3122 min 442s Histogram: 1 0 0 0 0 0 0 0 0 0 442s 442s Total # of neighbors = 3122 442s Ave neighs/atom = 7.805 442s Neighbor list builds = 346 442s Dangerous builds = 0 442s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 442s Setting up Verlet run ... 442s Unit style : lj 442s Current step : 2000 442s Time step : 0.002 442s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 442s Step c_rot E_pair TotEng Press Volume 442s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 442s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 442s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 442s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 442s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 442s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 442s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 442s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 442s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 442s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 442s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 442s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 442s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 442s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 442s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 442s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 442s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 442s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 442s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 442s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 442s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 442s Loop time of 0.601929 on 1 procs for 2000 steps with 400 atoms 442s 442s Performance: 574153.934 tau/day, 3322.650 timesteps/s, 1.329 Matom-step/s 442s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 442s 442s MPI task timing breakdown: 442s Section | min time | avg time | max time |%varavg| %total 442s --------------------------------------------------------------- 442s Pair | 0.48012 | 0.48012 | 0.48012 | 0.0 | 79.76 442s Neigh | 0.0057584 | 0.0057584 | 0.0057584 | 0.0 | 0.96 442s Comm | 0.012054 | 0.012054 | 0.012054 | 0.0 | 2.00 442s Output | 0.019122 | 0.019122 | 0.019122 | 0.0 | 3.18 442s Modify | 0.081323 | 0.081323 | 0.081323 | 0.0 | 13.51 442s Other | | 0.003556 | | | 0.59 442s 442s Nlocal: 400 ave 400 max 400 min 442s Histogram: 1 0 0 0 0 0 0 0 0 0 442s Nghost: 284 ave 284 max 284 min 442s Histogram: 1 0 0 0 0 0 0 0 0 0 442s Neighs: 3287 ave 3287 max 3287 min 442s Histogram: 1 0 0 0 0 0 0 0 0 0 442s 442s Total # of neighbors = 3287 442s Ave neighs/atom = 8.2175 442s Neighbor list builds = 51 442s Dangerous builds = 0 442s Total wall time: 0:00:01 442s LAMMPS (7 Feb 2024 - Update 1) 442s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 442s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 442s using 1 OpenMP thread(s) per MPI task 442s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 442s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 442s 2 by 1 by 1 MPI processor grid 442s Created 400 atoms 442s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 442s create_atoms CPU = 0.001 seconds 442s Setting atom values ... 442s 29 settings made for type/fraction 442s Setting atom values ... 442s 371 settings made for mass 442s Setting atom values ... 442s 29 settings made for mass 442s Setting atom values ... 442s 371 settings made for shape 442s Setting atom values ... 442s 29 settings made for shape 442s Setting atom values ... 442s 400 settings made for quat/random 442s 371 atoms in group spheroid 442s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 442s Neighbor list info ... 442s update: every = 1 steps, delay = 0 steps, check = yes 442s max neighbors/atom: 2000, page size: 100000 442s master list distance cutoff = 4.8 442s ghost atom cutoff = 4.8 442s binsize = 2.4, bins = 59 59 3 442s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 442s (1) pair resquared, perpetual 442s attributes: half, newton on 442s pair build: half/bin/atomonly/newton 442s stencil: half/bin/2d 442s bin: standard 442s Setting up Verlet run ... 442s Unit style : lj 442s Current step : 0 442s Time step : 0.002 442s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 442s Step c_rot E_pair TotEng Press Volume 442s 0 2.3158404 0 2.394 0.04788 20000 442s 100 1.7101139 0 1.7678302 0.034413192 20548.286 442s 200 2.3115592 0 2.3895743 0.04649702 20556.796 442s 300 1.831333 0 1.8931405 0.041256922 18354.646 442s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 442s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 442s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 443s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 443s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 443s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 443s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 443s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 443s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 443s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 443s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 443s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 443s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 443s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 443s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 443s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 443s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 443s Loop time of 0.69873 on 2 procs for 2000 steps with 400 atoms 443s 443s Performance: 494611.987 tau/day, 2862.338 timesteps/s, 1.145 Matom-step/s 443s 96.2% CPU use with 2 MPI tasks x 1 OpenMP threads 443s 443s MPI task timing breakdown: 443s Section | min time | avg time | max time |%varavg| %total 443s --------------------------------------------------------------- 443s Pair | 0.40319 | 0.41239 | 0.42159 | 1.4 | 59.02 443s Neigh | 0.01059 | 0.010683 | 0.010776 | 0.1 | 1.53 443s Comm | 0.028972 | 0.038083 | 0.047193 | 4.7 | 5.45 443s Output | 0.09775 | 0.097905 | 0.098061 | 0.0 | 14.01 443s Modify | 0.10371 | 0.10414 | 0.10457 | 0.1 | 14.90 443s Other | | 0.03553 | | | 5.09 443s 443s Nlocal: 200 ave 210 max 190 min 443s Histogram: 1 0 0 0 0 0 0 0 0 1 443s Nghost: 164 ave 168 max 160 min 443s Histogram: 1 0 0 0 0 0 0 0 0 1 443s Neighs: 910 ave 958 max 862 min 443s Histogram: 1 0 0 0 0 0 0 0 0 1 443s 443s Total # of neighbors = 1820 443s Ave neighs/atom = 4.55 443s Neighbor list builds = 420 443s Dangerous builds = 0 443s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 443s Setting up Verlet run ... 443s Unit style : lj 443s Current step : 2000 443s Time step : 0.002 443s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 443s Step c_rot E_pair TotEng Press Volume 443s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 443s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 443s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 443s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 443s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 443s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 443s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 443s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 443s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 444s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 444s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 444s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 444s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 444s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 444s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 444s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 444s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 444s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 444s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 444s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 444s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 444s Loop time of 0.925553 on 2 procs for 2000 steps with 400 atoms 444s 444s Performance: 373398.329 tau/day, 2160.870 timesteps/s, 864.348 katom-step/s 444s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 444s 444s MPI task timing breakdown: 444s Section | min time | avg time | max time |%varavg| %total 444s --------------------------------------------------------------- 444s Pair | 0.7286 | 0.75477 | 0.78095 | 3.0 | 81.55 444s Neigh | 0.0020222 | 0.0021574 | 0.0022926 | 0.3 | 0.23 444s Comm | 0.079936 | 0.10642 | 0.13291 | 8.1 | 11.50 444s Output | 0.014932 | 0.01507 | 0.015208 | 0.1 | 1.63 444s Modify | 0.038682 | 0.040783 | 0.042884 | 1.0 | 4.41 444s Other | | 0.006348 | | | 0.69 444s 444s Nlocal: 200 ave 212 max 188 min 444s Histogram: 1 0 0 0 0 0 0 0 0 1 444s Nghost: 171.5 ave 173 max 170 min 444s Histogram: 1 0 0 0 0 0 0 0 0 1 444s Neighs: 880.5 ave 946 max 815 min 444s Histogram: 1 0 0 0 0 0 0 0 0 1 444s 444s Total # of neighbors = 1761 444s Ave neighs/atom = 4.4025 444s Neighbor list builds = 49 444s Dangerous builds = 0 444s Total wall time: 0:00:01 444s LAMMPS (7 Feb 2024 - Update 1) 445s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 445s using 1 OpenMP thread(s) per MPI task 445s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 445s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 445s 1 by 1 by 1 MPI processor grid 445s Created 400 atoms 445s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 445s create_atoms CPU = 0.000 seconds 445s Setting atom values ... 445s 29 settings made for type/fraction 445s Setting atom values ... 445s 371 settings made for mass 445s Setting atom values ... 445s 29 settings made for mass 445s Setting atom values ... 445s 371 settings made for shape 445s Setting atom values ... 445s 29 settings made for shape 445s Setting atom values ... 445s 400 settings made for quat/random 445s 371 atoms in group spheroid 445s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 445s Neighbor list info ... 445s update: every = 1 steps, delay = 0 steps, check = yes 445s max neighbors/atom: 2000, page size: 100000 445s master list distance cutoff = 4.8 445s ghost atom cutoff = 4.8 445s binsize = 2.4, bins = 59 59 3 445s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 445s (1) pair resquared, perpetual 445s attributes: half, newton on 445s pair build: half/bin/atomonly/newton 445s stencil: half/bin/2d 445s bin: standard 445s Setting up Verlet run ... 445s Unit style : lj 445s Current step : 0 445s Time step : 0.002 445s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 445s Step c_rot E_pair TotEng Press Volume 445s 0 2.3158404 0 2.394 0.04788 20000 445s 100 1.7101139 0 1.7678302 0.034413192 20548.286 445s 200 2.3115592 0 2.3895743 0.04649702 20556.796 445s 300 1.831333 0 1.8931405 0.041256922 18354.646 445s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 445s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 445s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 445s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 445s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 445s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 445s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 445s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 445s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 445s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 445s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 445s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 445s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 445s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 445s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 445s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 445s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 445s Loop time of 1.01077 on 1 procs for 2000 steps with 400 atoms 445s 445s Performance: 341916.228 tau/day, 1978.682 timesteps/s, 791.473 katom-step/s 445s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 445s 445s MPI task timing breakdown: 445s Section | min time | avg time | max time |%varavg| %total 445s --------------------------------------------------------------- 445s Pair | 0.8206 | 0.8206 | 0.8206 | 0.0 | 81.19 445s Neigh | 0.02694 | 0.02694 | 0.02694 | 0.0 | 2.67 445s Comm | 0.0079449 | 0.0079449 | 0.0079449 | 0.0 | 0.79 445s Output | 0.019339 | 0.019339 | 0.019339 | 0.0 | 1.91 445s Modify | 0.13096 | 0.13096 | 0.13096 | 0.0 | 12.96 448s Other | | 0.004987 | | | 0.49 448s 448s Nlocal: 400 ave 400 max 400 min 448s Histogram: 1 0 0 0 0 0 0 0 0 0 448s Nghost: 206 ave 206 max 206 min 448s Histogram: 1 0 0 0 0 0 0 0 0 0 448s Neighs: 1820 ave 1820 max 1820 min 448s Histogram: 1 0 0 0 0 0 0 0 0 0 448s 448s Total # of neighbors = 1820 448s Ave neighs/atom = 4.55 448s Neighbor list builds = 420 448s Dangerous builds = 0 448s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 448s Setting up Verlet run ... 448s Unit style : lj 448s Current step : 2000 448s Time step : 0.002 448s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 448s Step c_rot E_pair TotEng Press Volume 448s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 448s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 448s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 448s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 448s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 448s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 448s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 448s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 448s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 448s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 448s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 448s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 448s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 448s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 448s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 448s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 448s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 448s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 448s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 448s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 448s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 448s Loop time of 1.84039 on 1 procs for 2000 steps with 400 atoms 448s 448s Performance: 187786.398 tau/day, 1086.727 timesteps/s, 434.691 katom-step/s 448s 96.0% CPU use with 1 MPI tasks x 1 OpenMP threads 448s 448s MPI task timing breakdown: 448s Section | min time | avg time | max time |%varavg| %total 448s --------------------------------------------------------------- 448s Pair | 1.6904 | 1.6904 | 1.6904 | 0.0 | 91.85 448s Neigh | 0.0041721 | 0.0041721 | 0.0041721 | 0.0 | 0.23 448s Comm | 0.0092519 | 0.0092519 | 0.0092519 | 0.0 | 0.50 448s Output | 0.029392 | 0.029392 | 0.029392 | 0.0 | 1.60 448s Modify | 0.082559 | 0.082559 | 0.082559 | 0.0 | 4.49 448s Other | | 0.02457 | | | 1.34 448s 448s Nlocal: 400 ave 400 max 400 min 448s Histogram: 1 0 0 0 0 0 0 0 0 0 448s Nghost: 215 ave 215 max 215 min 448s Histogram: 1 0 0 0 0 0 0 0 0 0 448s Neighs: 1761 ave 1761 max 1761 min 448s Histogram: 1 0 0 0 0 0 0 0 0 0 448s 448s Total # of neighbors = 1761 448s Ave neighs/atom = 4.4025 448s Neighbor list builds = 49 448s Dangerous builds = 0 448s Total wall time: 0:00:02 448s run: OK 448s autopkgtest [12:03:26]: test ellipse: -----------------------] 449s ellipse PASS 449s autopkgtest [12:03:27]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 449s autopkgtest [12:03:27]: test flow: preparing testbed 460s Reading package lists... 460s Building dependency tree... 460s Reading state information... 460s Starting pkgProblemResolver with broken count: 0 460s Starting 2 pkgProblemResolver with broken count: 0 460s Done 461s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 461s 1 not fully installed or removed. 461s After this operation, 0 B of additional disk space will be used. 461s Setting up autopkgtest-satdep (0) ... 464s (Reading database ... 78919 files and directories currently installed.) 465s Removing autopkgtest-satdep (0) ... 466s autopkgtest [12:03:44]: test flow: [----------------------- 466s LAMMPS (7 Feb 2024 - Update 1) 466s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 466s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 466s using 1 OpenMP thread(s) per MPI task 466s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 466s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 466s 2 by 1 by 1 MPI processor grid 466s Created 420 atoms 466s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 466s create_atoms CPU = 0.001 seconds 466s 60 atoms in group lower 466s 60 atoms in group upper 466s 120 atoms in group boundary 466s 300 atoms in group flow 466s Setting atom values ... 466s 60 settings made for type 466s Setting atom values ... 466s 60 settings made for type 467s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 467s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 467s Neighbor list info ... 467s update: every = 1 steps, delay = 5 steps, check = yes 467s max neighbors/atom: 2000, page size: 100000 467s master list distance cutoff = 1.42246 467s ghost atom cutoff = 1.42246 467s binsize = 0.71123, bins = 37 32 1 467s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 467s (1) pair lj/cut, perpetual 467s attributes: half, newton on 467s pair build: half/bin/atomonly/newton 467s stencil: half/bin/2d 467s bin: standard 467s Setting up Verlet run ... 467s Unit style : lj 467s Current step : 0 467s Time step : 0.003 467s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 467s Step Temp E_pair E_mol TotEng Press Volume 467s 0 1 0 0 0.71190476 0.52314537 571.54286 467s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 467s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 467s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 467s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 467s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 467s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 467s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 467s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 467s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 467s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 467s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 467s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 467s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 467s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 467s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 467s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 467s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 467s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 467s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 467s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 467s Loop time of 0.152548 on 2 procs for 10000 steps with 420 atoms 467s 467s Performance: 16991368.195 tau/day, 65553.118 timesteps/s, 27.532 Matom-step/s 467s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 467s 467s MPI task timing breakdown: 467s Section | min time | avg time | max time |%varavg| %total 467s --------------------------------------------------------------- 467s Pair | 0.037664 | 0.038045 | 0.038426 | 0.2 | 24.94 467s Neigh | 0.019695 | 0.019836 | 0.019978 | 0.1 | 13.00 467s Comm | 0.052197 | 0.053417 | 0.054637 | 0.5 | 35.02 467s Output | 0.00025984 | 0.0017048 | 0.0031497 | 3.5 | 1.12 467s Modify | 0.025365 | 0.025615 | 0.025864 | 0.2 | 16.79 467s Other | | 0.01393 | | | 9.13 467s 467s Nlocal: 210 ave 214 max 206 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s Nghost: 51 ave 52 max 50 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s Neighs: 472 ave 494 max 450 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s 467s Total # of neighbors = 944 467s Ave neighs/atom = 2.247619 467s Neighbor list builds = 994 467s Dangerous builds = 0 467s Total wall time: 0:00:00 467s LAMMPS (7 Feb 2024 - Update 1) 467s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 467s using 1 OpenMP thread(s) per MPI task 467s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 467s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 467s 1 by 1 by 1 MPI processor grid 467s Created 420 atoms 467s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 467s create_atoms CPU = 0.000 seconds 467s 60 atoms in group lower 467s 60 atoms in group upper 467s 120 atoms in group boundary 467s 300 atoms in group flow 467s Setting atom values ... 467s 60 settings made for type 467s Setting atom values ... 467s 60 settings made for type 467s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 467s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 467s Neighbor list info ... 467s update: every = 1 steps, delay = 5 steps, check = yes 467s max neighbors/atom: 2000, page size: 100000 467s master list distance cutoff = 1.42246 467s ghost atom cutoff = 1.42246 467s binsize = 0.71123, bins = 37 32 1 467s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 467s (1) pair lj/cut, perpetual 467s attributes: half, newton on 467s pair build: half/bin/atomonly/newton 467s stencil: half/bin/2d 467s bin: standard 467s Setting up Verlet run ... 467s Unit style : lj 467s Current step : 0 467s Time step : 0.003 467s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 467s Step Temp E_pair E_mol TotEng Press Volume 467s 0 1 0 0 0.71190476 0.52314537 571.54286 467s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 467s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 467s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 467s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 467s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 467s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 467s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 467s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 467s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 467s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 467s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 467s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 467s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 467s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 467s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 467s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 467s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 467s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 467s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 467s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 467s Loop time of 0.187518 on 1 procs for 10000 steps with 420 atoms 467s 467s Performance: 13822649.140 tau/day, 53328.122 timesteps/s, 22.398 Matom-step/s 467s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 467s 467s MPI task timing breakdown: 467s Section | min time | avg time | max time |%varavg| %total 467s --------------------------------------------------------------- 467s Pair | 0.079851 | 0.079851 | 0.079851 | 0.0 | 42.58 467s Neigh | 0.03805 | 0.03805 | 0.03805 | 0.0 | 20.29 467s Comm | 0.0061264 | 0.0061264 | 0.0061264 | 0.0 | 3.27 467s Output | 0.00022071 | 0.00022071 | 0.00022071 | 0.0 | 0.12 467s Modify | 0.049158 | 0.049158 | 0.049158 | 0.0 | 26.22 467s Other | | 0.01411 | | | 7.53 467s 467s Nlocal: 420 ave 420 max 420 min 467s Histogram: 1 0 0 0 0 0 0 0 0 0 467s Nghost: 50 ave 50 max 50 min 467s Histogram: 1 0 0 0 0 0 0 0 0 0 467s Neighs: 946 ave 946 max 946 min 467s Histogram: 1 0 0 0 0 0 0 0 0 0 467s 467s Total # of neighbors = 946 467s Ave neighs/atom = 2.252381 467s Neighbor list builds = 979 467s Dangerous builds = 0 467s Total wall time: 0:00:00 467s LAMMPS (7 Feb 2024 - Update 1) 467s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 467s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 467s using 1 OpenMP thread(s) per MPI task 467s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 467s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 467s 2 by 1 by 1 MPI processor grid 467s Created 420 atoms 467s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 467s create_atoms CPU = 0.000 seconds 467s 60 atoms in group lower 467s 60 atoms in group upper 467s 120 atoms in group boundary 467s 300 atoms in group flow 467s Setting atom values ... 467s 60 settings made for type 467s Setting atom values ... 467s 60 settings made for type 467s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 467s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 467s Neighbor list info ... 467s update: every = 1 steps, delay = 5 steps, check = yes 467s max neighbors/atom: 2000, page size: 100000 467s master list distance cutoff = 1.42246 467s ghost atom cutoff = 1.42246 467s binsize = 0.71123, bins = 37 32 1 467s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 467s (1) pair lj/cut, perpetual 467s attributes: half, newton on 467s pair build: half/bin/atomonly/newton 467s stencil: half/bin/2d 467s bin: standard 467s Setting up Verlet run ... 467s Unit style : lj 467s Current step : 0 467s Time step : 0.003 467s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 467s Step Temp E_pair E_mol TotEng Press Volume 467s 0 1 0 0 0.71190476 0.52314537 571.54286 467s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 467s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 467s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 467s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 467s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 467s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 467s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 467s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 467s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 467s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 467s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 467s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 467s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 467s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 467s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 467s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 467s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 467s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 467s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 467s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 467s Loop time of 0.176269 on 2 procs for 10000 steps with 420 atoms 467s 467s Performance: 14704826.770 tau/day, 56731.585 timesteps/s, 23.827 Matom-step/s 467s 96.9% CPU use with 2 MPI tasks x 1 OpenMP threads 467s 467s MPI task timing breakdown: 467s Section | min time | avg time | max time |%varavg| %total 467s --------------------------------------------------------------- 467s Pair | 0.041601 | 0.041643 | 0.041686 | 0.0 | 23.62 467s Neigh | 0.011113 | 0.011182 | 0.011252 | 0.1 | 6.34 467s Comm | 0.055981 | 0.05624 | 0.056499 | 0.1 | 31.91 467s Output | 0.00026035 | 0.00065434 | 0.0010483 | 0.0 | 0.37 467s Modify | 0.052398 | 0.052537 | 0.052675 | 0.1 | 29.80 467s Other | | 0.01401 | | | 7.95 467s 467s Nlocal: 210 ave 211 max 209 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s Nghost: 50 ave 51 max 49 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s Neighs: 563.5 ave 569 max 558 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s 467s Total # of neighbors = 1127 467s Ave neighs/atom = 2.6833333 467s Neighbor list builds = 560 467s Dangerous builds = 0 467s Total wall time: 0:00:00 467s LAMMPS (7 Feb 2024 - Update 1) 468s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 468s using 1 OpenMP thread(s) per MPI task 468s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 468s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 468s 1 by 1 by 1 MPI processor grid 468s Created 420 atoms 468s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 468s create_atoms CPU = 0.000 seconds 468s 60 atoms in group lower 468s 60 atoms in group upper 468s 120 atoms in group boundary 468s 300 atoms in group flow 468s Setting atom values ... 468s 60 settings made for type 468s Setting atom values ... 468s 60 settings made for type 468s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 468s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 468s Neighbor list info ... 468s update: every = 1 steps, delay = 5 steps, check = yes 468s max neighbors/atom: 2000, page size: 100000 468s master list distance cutoff = 1.42246 468s ghost atom cutoff = 1.42246 468s binsize = 0.71123, bins = 37 32 1 468s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 468s (1) pair lj/cut, perpetual 468s attributes: half, newton on 468s pair build: half/bin/atomonly/newton 468s stencil: half/bin/2d 468s bin: standard 468s Setting up Verlet run ... 468s Unit style : lj 468s Current step : 0 468s Time step : 0.003 468s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 468s Step Temp E_pair E_mol TotEng Press Volume 468s 0 1 0 0 0.71190476 0.52314537 571.54286 468s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 468s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 468s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 468s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 468s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 468s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 468s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 468s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 468s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 468s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 468s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 468s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 468s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 468s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 468s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 468s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 468s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 468s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 468s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 468s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 468s Loop time of 0.219415 on 1 procs for 10000 steps with 420 atoms 468s 468s Performance: 11813213.730 tau/day, 45575.670 timesteps/s, 19.142 Matom-step/s 468s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 468s 468s MPI task timing breakdown: 468s Section | min time | avg time | max time |%varavg| %total 468s --------------------------------------------------------------- 468s Pair | 0.085041 | 0.085041 | 0.085041 | 0.0 | 38.76 468s Neigh | 0.021398 | 0.021398 | 0.021398 | 0.0 | 9.75 468s Comm | 0.0048193 | 0.0048193 | 0.0048193 | 0.0 | 2.20 468s Output | 0.00021104 | 0.00021104 | 0.00021104 | 0.0 | 0.10 468s Modify | 0.094442 | 0.094442 | 0.094442 | 0.0 | 43.04 468s Other | | 0.0135 | | | 6.15 468s 468s Nlocal: 420 ave 420 max 420 min 468s Histogram: 1 0 0 0 0 0 0 0 0 0 468s Nghost: 51 ave 51 max 51 min 468s Histogram: 1 0 0 0 0 0 0 0 0 0 468s Neighs: 1150 ave 1150 max 1150 min 468s Histogram: 1 0 0 0 0 0 0 0 0 0 468s 468s Total # of neighbors = 1150 468s Ave neighs/atom = 2.7380952 468s Neighbor list builds = 563 468s Dangerous builds = 0 468s Total wall time: 0:00:00 468s run: OK 468s autopkgtest [12:03:46]: test flow: -----------------------] 469s autopkgtest [12:03:47]: test flow: - - - - - - - - - - results - - - - - - - - - - 469s flow PASS 469s autopkgtest [12:03:47]: test friction: preparing testbed 475s Reading package lists... 475s Building dependency tree... 475s Reading state information... 475s Starting pkgProblemResolver with broken count: 0 475s Starting 2 pkgProblemResolver with broken count: 0 475s Done 477s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 477s 1 not fully installed or removed. 477s After this operation, 0 B of additional disk space will be used. 477s Setting up autopkgtest-satdep (0) ... 479s (Reading database ... 78919 files and directories currently installed.) 479s Removing autopkgtest-satdep (0) ... 480s autopkgtest [12:03:58]: test friction: [----------------------- 480s LAMMPS (7 Feb 2024 - Update 1) 480s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 480s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 480s using 1 OpenMP thread(s) per MPI task 480s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 480s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 480s 2 by 1 by 1 MPI processor grid 480s Created 750 atoms 480s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 480s create_atoms CPU = 0.000 seconds 480s Created 750 atoms 480s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 480s create_atoms CPU = 0.000 seconds 480s Created 112 atoms 480s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 480s create_atoms CPU = 0.000 seconds 480s Created 112 atoms 480s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 480s create_atoms CPU = 0.000 seconds 480s 750 atoms in group lo 480s 862 atoms in group lo 480s 750 atoms in group hi 480s 862 atoms in group hi 480s 150 atoms in group lo-fixed 480s 150 atoms in group hi-fixed 480s 300 atoms in group boundary 480s 1424 atoms in group mobile 480s Setting atom values ... 480s 150 settings made for type 480s Setting atom values ... 480s 150 settings made for type 480s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 480s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 480s Neighbor list info ... 480s update: every = 1 steps, delay = 5 steps, check = yes 480s max neighbors/atom: 2000, page size: 100000 480s master list distance cutoff = 2.8 480s ghost atom cutoff = 2.8 480s binsize = 1.4, bins = 41 31 1 480s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 480s (1) pair lj/cut, perpetual 480s attributes: half, newton on 480s pair build: half/bin/atomonly/newton 480s stencil: half/bin/2d 480s bin: standard 480s Setting up Verlet run ... 480s Unit style : lj 480s Current step : 0 480s Time step : 0.0025 480s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 480s Step Temp E_pair E_mol TotEng Press Volume 480s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 480s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 481s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 481s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 481s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 481s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 481s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 481s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 481s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 481s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 482s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 482s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 482s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 482s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 482s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 482s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 482s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 482s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 482s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 483s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 483s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 483s Loop time of 2.3862 on 2 procs for 20000 steps with 1724 atoms 483s 483s Performance: 1810407.381 tau/day, 8381.516 timesteps/s, 14.450 Matom-step/s 483s 99.7% CPU use with 2 MPI tasks x 1 OpenMP threads 483s 483s MPI task timing breakdown: 483s Section | min time | avg time | max time |%varavg| %total 483s --------------------------------------------------------------- 483s Pair | 1.5747 | 1.6928 | 1.8108 | 9.1 | 70.94 483s Neigh | 0.095945 | 0.1064 | 0.11685 | 3.2 | 4.46 483s Comm | 0.16984 | 0.30111 | 0.43238 | 23.9 | 12.62 483s Output | 0.00037123 | 0.00091178 | 0.0014523 | 0.0 | 0.04 483s Modify | 0.19215 | 0.20549 | 0.21884 | 2.9 | 8.61 483s Other | | 0.07952 | | | 3.33 483s 483s Nlocal: 862 ave 874 max 850 min 483s Histogram: 1 0 0 0 0 0 0 0 0 1 483s Nghost: 165.5 ave 166 max 165 min 483s Histogram: 1 0 0 0 0 0 0 0 0 1 483s Neighs: 7198 ave 7283 max 7113 min 483s Histogram: 1 0 0 0 0 0 0 0 0 1 483s 483s Total # of neighbors = 14396 483s Ave neighs/atom = 8.350348 483s Neighbor list builds = 720 483s Dangerous builds = 0 483s Total wall time: 0:00:02 483s LAMMPS (7 Feb 2024 - Update 1) 487s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 487s using 1 OpenMP thread(s) per MPI task 487s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 487s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 487s 1 by 1 by 1 MPI processor grid 487s Created 750 atoms 487s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 487s create_atoms CPU = 0.000 seconds 487s Created 750 atoms 487s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 487s create_atoms CPU = 0.000 seconds 487s Created 112 atoms 487s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 487s create_atoms CPU = 0.000 seconds 487s Created 112 atoms 487s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 487s create_atoms CPU = 0.000 seconds 487s 750 atoms in group lo 487s 862 atoms in group lo 487s 750 atoms in group hi 487s 862 atoms in group hi 487s 150 atoms in group lo-fixed 487s 150 atoms in group hi-fixed 487s 300 atoms in group boundary 487s 1424 atoms in group mobile 487s Setting atom values ... 487s 150 settings made for type 487s Setting atom values ... 487s 150 settings made for type 487s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 487s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 487s Neighbor list info ... 487s update: every = 1 steps, delay = 5 steps, check = yes 487s max neighbors/atom: 2000, page size: 100000 487s master list distance cutoff = 2.8 487s ghost atom cutoff = 2.8 487s binsize = 1.4, bins = 41 31 1 487s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 487s (1) pair lj/cut, perpetual 487s attributes: half, newton on 487s pair build: half/bin/atomonly/newton 487s stencil: half/bin/2d 487s bin: standard 487s Setting up Verlet run ... 487s Unit style : lj 487s Current step : 0 487s Time step : 0.0025 487s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 487s Step Temp E_pair E_mol TotEng Press Volume 487s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 487s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 487s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 487s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 487s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 487s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 487s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 487s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 487s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 487s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 487s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 487s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 487s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 487s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 487s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 487s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 487s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 487s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 487s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 487s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 487s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 487s Loop time of 4.13219 on 1 procs for 20000 steps with 1724 atoms 487s 487s Performance: 1045450.364 tau/day, 4840.048 timesteps/s, 8.344 Matom-step/s 487s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 487s 487s MPI task timing breakdown: 487s Section | min time | avg time | max time |%varavg| %total 487s --------------------------------------------------------------- 487s Pair | 3.3884 | 3.3884 | 3.3884 | 0.0 | 82.00 487s Neigh | 0.20169 | 0.20169 | 0.20169 | 0.0 | 4.88 487s Comm | 0.026583 | 0.026583 | 0.026583 | 0.0 | 0.64 487s Output | 0.00053411 | 0.00053411 | 0.00053411 | 0.0 | 0.01 487s Modify | 0.41861 | 0.41861 | 0.41861 | 0.0 | 10.13 487s Other | | 0.0964 | | | 2.33 487s 487s Nlocal: 1724 ave 1724 max 1724 min 487s Histogram: 1 0 0 0 0 0 0 0 0 0 487s Nghost: 145 ave 145 max 145 min 487s Histogram: 1 0 0 0 0 0 0 0 0 0 487s Neighs: 14397 ave 14397 max 14397 min 487s Histogram: 1 0 0 0 0 0 0 0 0 0 487s 487s Total # of neighbors = 14397 487s Ave neighs/atom = 8.3509281 487s Neighbor list builds = 723 487s Dangerous builds = 0 487s Total wall time: 0:00:04 487s run: OK 487s autopkgtest [12:04:05]: test friction: -----------------------] 488s autopkgtest [12:04:06]: test friction: - - - - - - - - - - results - - - - - - - - - - 488s friction PASS 488s autopkgtest [12:04:06]: test hugo: preparing testbed 504s Reading package lists... 504s Building dependency tree... 504s Reading state information... 504s Starting pkgProblemResolver with broken count: 0 504s Starting 2 pkgProblemResolver with broken count: 0 504s Done 505s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 505s 1 not fully installed or removed. 505s After this operation, 0 B of additional disk space will be used. 505s Setting up autopkgtest-satdep (0) ... 508s (Reading database ... 78919 files and directories currently installed.) 508s Removing autopkgtest-satdep (0) ... 509s autopkgtest [12:04:27]: test hugo: [----------------------- 510s LAMMPS (7 Feb 2024 - Update 1) 512s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 512s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 512s using 1 OpenMP thread(s) per MPI task 512s Lattice spacing in x,y,z = 1.4142135 2 2 512s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 512s 1 by 1 by 2 MPI processor grid 512s Created 1000 atoms 512s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 512s create_atoms CPU = 0.000 seconds 512s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 512s Neighbor list info ... 512s update: every = 1 steps, delay = 0 steps, check = yes 512s max neighbors/atom: 2000, page size: 100000 512s master list distance cutoff = 1.8475372 512s ghost atom cutoff = 1.8475372 512s binsize = 0.92376862, bins = 8 11 11 512s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 512s (1) pair lj/cubic, perpetual 512s attributes: half, newton on 512s pair build: half/bin/atomonly/newton 512s stencil: half/bin/3d 512s bin: standard 512s Setting up cg style minimization ... 512s Unit style : lj 512s Current step : 0 512s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 512s (src/min.cpp:219) 512s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 512s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 512s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 512s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 512s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 512s Loop time of 0.0326894 on 2 procs for 134 steps with 1000 atoms 512s 512s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 512s 512s Minimization stats: 512s Stopping criterion = force tolerance 512s Energy initial, next-to-last, final = 512s -6.29375358358574 -6.33442531515467 -6.33442531515467 512s Force two-norm initial, final = 3395.2895 5.526433e-10 512s Force max component initial, final = 1960.2713 3.2059964e-10 512s Final line search alpha, max atom move = 1 3.2059964e-10 512s Iterations, force evaluations = 134 137 512s 512s MPI task timing breakdown: 512s Section | min time | avg time | max time |%varavg| %total 512s --------------------------------------------------------------- 512s Pair | 0.018146 | 0.019876 | 0.021606 | 1.2 | 60.80 512s Neigh | 0.00039759 | 0.00042663 | 0.00045567 | 0.0 | 1.31 512s Comm | 0.0039802 | 0.0056552 | 0.0073303 | 2.2 | 17.30 512s Output | 2.004e-05 | 4.5519e-05 | 7.0999e-05 | 0.0 | 0.14 512s Modify | 0 | 0 | 0 | 0.0 | 0.00 512s Other | | 0.006686 | | | 20.45 512s 512s Nlocal: 500 ave 550 max 450 min 512s Histogram: 1 0 0 0 0 0 0 0 0 1 512s Nghost: 1214 ave 1264 max 1164 min 512s Histogram: 1 0 0 0 0 0 0 0 0 1 512s Neighs: 10500 ave 11550 max 9450 min 512s Histogram: 1 0 0 0 0 0 0 0 0 1 512s 512s Total # of neighbors = 21000 512s Ave neighs/atom = 21 512s Neighbor list builds = 1 512s Dangerous builds = 0 512s System init for write_restart ... 512s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 512s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 512s using 1 OpenMP thread(s) per MPI task 512s Reading restart file ... 512s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 512s restoring atom style atomic from restart 512s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 512s 1 by 1 by 2 MPI processor grid 512s restoring pair style lj/cubic from restart 512s 1000 atoms 512s read_restart CPU = 0.001 seconds 512s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 512s Neighbor list info ... 512s update: every = 1 steps, delay = 0 steps, check = yes 512s max neighbors/atom: 2000, page size: 100000 512s master list distance cutoff = 1.7475372 512s ghost atom cutoff = 1.7475372 512s binsize = 0.87376862, bins = 8 12 12 512s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 512s (1) pair lj/cubic, perpetual 512s attributes: half, newton on 512s pair build: half/bin/atomonly/newton 512s stencil: half/bin/3d 512s bin: standard 512s Setting up Verlet run ... 512s Unit style : lj 512s Current step : 0 512s Time step : 0.001 512s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 512s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 512s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 512s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 512s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 512s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 512s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 512s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 512s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 512s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 512s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 513s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 513s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 513s Loop time of 2.95083 on 2 procs for 10000 steps with 1000 atoms 513s 513s Performance: 292799.207 tau/day, 3388.880 timesteps/s, 3.389 Matom-step/s 513s 96.5% CPU use with 2 MPI tasks x 1 OpenMP threads 513s 513s MPI task timing breakdown: 513s Section | min time | avg time | max time |%varavg| %total 513s --------------------------------------------------------------- 513s Pair | 1.9073 | 1.9345 | 1.9617 | 2.0 | 65.56 513s Neigh | 0.091426 | 0.093086 | 0.094746 | 0.5 | 3.15 513s Comm | 0.42831 | 0.45456 | 0.48082 | 3.9 | 15.40 513s Output | 0.00046771 | 0.00091418 | 0.0013607 | 0.0 | 0.03 513s Modify | 0.42624 | 0.42705 | 0.42785 | 0.1 | 14.47 513s Other | | 0.04071 | | | 1.38 513s 513s Nlocal: 500 ave 509 max 491 min 513s Histogram: 1 0 0 0 0 0 0 0 0 1 513s Nghost: 1346.5 ave 1369 max 1324 min 513s Histogram: 1 0 0 0 0 0 0 0 0 1 513s Neighs: 10311.5 ave 10391 max 10232 min 513s Histogram: 1 0 0 0 0 0 0 0 0 1 513s 513s Total # of neighbors = 20623 513s Ave neighs/atom = 20.623 513s Neighbor list builds = 205 513s Dangerous builds = 0 513s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 513s using 1 OpenMP thread(s) per MPI task 513s Reading restart file ... 513s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 513s restoring atom style atomic from restart 513s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 513s 1 by 1 by 2 MPI processor grid 513s restoring pair style lj/cubic from restart 513s 1000 atoms 513s read_restart CPU = 0.001 seconds 513s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 513s Neighbor list info ... 513s update: every = 1 steps, delay = 0 steps, check = yes 513s max neighbors/atom: 2000, page size: 100000 513s master list distance cutoff = 1.7475372 513s ghost atom cutoff = 1.7475372 513s binsize = 0.87376862, bins = 8 12 12 513s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 513s (1) pair lj/cubic, perpetual 513s attributes: half, newton on 513s pair build: half/bin/atomonly/newton 513s stencil: half/bin/3d 513s bin: standard 513s Setting up Verlet run ... 513s Unit style : lj 513s Current step : 0 513s Time step : 0.001 513s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 513s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 513s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 513s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 513s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 514s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 514s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 514s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 515s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 515s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 515s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 515s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 516s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 516s Loop time of 2.76093 on 2 procs for 10000 steps with 1000 atoms 516s 516s Performance: 312938.563 tau/day, 3621.974 timesteps/s, 3.622 Matom-step/s 516s 92.7% CPU use with 2 MPI tasks x 1 OpenMP threads 516s 516s MPI task timing breakdown: 516s Section | min time | avg time | max time |%varavg| %total 516s --------------------------------------------------------------- 516s Pair | 1.6933 | 1.7072 | 1.7211 | 1.1 | 61.83 516s Neigh | 0.0042162 | 0.0042233 | 0.0042304 | 0.0 | 0.15 516s Comm | 0.33434 | 0.43561 | 0.53688 | 15.3 | 15.78 516s Output | 0.010949 | 0.020101 | 0.029252 | 6.5 | 0.73 516s Modify | 0.45743 | 0.46616 | 0.47488 | 1.3 | 16.88 516s Other | | 0.1277 | | | 4.62 516s 516s Nlocal: 500 ave 508 max 492 min 516s Histogram: 1 0 0 0 0 0 0 0 0 1 516s Nghost: 1214 ave 1222 max 1206 min 516s Histogram: 1 0 0 0 0 0 0 0 0 1 516s Neighs: 10500 ave 10668 max 10332 min 516s Histogram: 1 0 0 0 0 0 0 0 0 1 516s 516s Total # of neighbors = 21000 516s Ave neighs/atom = 21 516s Neighbor list builds = 10 516s Dangerous builds = 0 516s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 516s using 1 OpenMP thread(s) per MPI task 516s Reading restart file ... 516s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 516s restoring atom style atomic from restart 516s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 516s 1 by 1 by 2 MPI processor grid 516s restoring pair style lj/cubic from restart 516s 1000 atoms 516s read_restart CPU = 0.001 seconds 516s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 516s Neighbor list info ... 516s update: every = 1 steps, delay = 0 steps, check = yes 516s max neighbors/atom: 2000, page size: 100000 516s master list distance cutoff = 1.7475372 516s ghost atom cutoff = 1.7475372 516s binsize = 0.87376862, bins = 8 12 12 516s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 516s (1) pair lj/cubic, perpetual 516s attributes: half, newton on 516s pair build: half/bin/atomonly/newton 516s stencil: half/bin/3d 516s bin: standard 516s Setting up Verlet run ... 516s Unit style : lj 516s Current step : 0 516s Time step : 0.001 516s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 516s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 516s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 516s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 516s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 517s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 517s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 517s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 517s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 518s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 518s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 518s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 518s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 518s Loop time of 2.5191 on 2 procs for 10000 steps with 1000 atoms 518s 518s Performance: 342979.995 tau/day, 3969.676 timesteps/s, 3.970 Matom-step/s 518s 92.0% CPU use with 2 MPI tasks x 1 OpenMP threads 518s 518s MPI task timing breakdown: 518s Section | min time | avg time | max time |%varavg| %total 518s --------------------------------------------------------------- 518s Pair | 1.717 | 1.7409 | 1.7649 | 1.8 | 69.11 518s Neigh | 0.040665 | 0.04073 | 0.040794 | 0.0 | 1.62 518s Comm | 0.29903 | 0.32044 | 0.34185 | 3.8 | 12.72 518s Output | 0.00047811 | 0.0012883 | 0.0020986 | 2.3 | 0.05 518s Modify | 0.37532 | 0.37857 | 0.38183 | 0.5 | 15.03 518s Other | | 0.03712 | | | 1.47 518s 518s Nlocal: 500 ave 510 max 490 min 518s Histogram: 1 0 0 0 0 0 0 0 0 1 518s Nghost: 1216.5 ave 1227 max 1206 min 518s Histogram: 1 0 0 0 0 0 0 0 0 1 518s Neighs: 10311 ave 10520 max 10102 min 518s Histogram: 1 0 0 0 0 0 0 0 0 1 518s 518s Total # of neighbors = 20622 518s Ave neighs/atom = 20.622 518s Neighbor list builds = 95 518s Dangerous builds = 0 518s Total wall time: 0:00:08 520s LAMMPS (7 Feb 2024 - Update 1) 520s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 520s using 1 OpenMP thread(s) per MPI task 520s Lattice spacing in x,y,z = 1.4142135 2 2 520s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 520s 1 by 1 by 1 MPI processor grid 520s Created 1000 atoms 520s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 520s create_atoms CPU = 0.000 seconds 520s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 520s Neighbor list info ... 520s update: every = 1 steps, delay = 0 steps, check = yes 520s max neighbors/atom: 2000, page size: 100000 520s master list distance cutoff = 1.8475372 520s ghost atom cutoff = 1.8475372 520s binsize = 0.92376862, bins = 8 11 11 520s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 520s (1) pair lj/cubic, perpetual 520s attributes: half, newton on 520s pair build: half/bin/atomonly/newton 520s stencil: half/bin/3d 520s bin: standard 520s Setting up cg style minimization ... 520s Unit style : lj 520s Current step : 0 520s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 520s (src/min.cpp:219) 520s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 520s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 520s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 520s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 520s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 520s Loop time of 0.0508929 on 1 procs for 134 steps with 1000 atoms 520s 520s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 520s 520s Minimization stats: 520s Stopping criterion = force tolerance 520s Energy initial, next-to-last, final = 520s -6.29375358358556 -6.33442531515503 -6.33442531515503 520s Force two-norm initial, final = 3395.2895 5.6047601e-10 520s Force max component initial, final = 1960.2713 3.2666928e-10 520s Final line search alpha, max atom move = 1 3.2666928e-10 520s Iterations, force evaluations = 134 137 520s 520s MPI task timing breakdown: 520s Section | min time | avg time | max time |%varavg| %total 520s --------------------------------------------------------------- 520s Pair | 0.040421 | 0.040421 | 0.040421 | 0.0 | 79.42 520s Neigh | 0.00081158 | 0.00081158 | 0.00081158 | 0.0 | 1.59 520s Comm | 0.0011292 | 0.0011292 | 0.0011292 | 0.0 | 2.22 520s Output | 2.2799e-05 | 2.2799e-05 | 2.2799e-05 | 0.0 | 0.04 520s Modify | 0 | 0 | 0 | 0.0 | 0.00 520s Other | | 0.008508 | | | 16.72 520s 520s Nlocal: 1000 ave 1000 max 1000 min 520s Histogram: 1 0 0 0 0 0 0 0 0 0 520s Nghost: 1724 ave 1724 max 1724 min 520s Histogram: 1 0 0 0 0 0 0 0 0 0 520s Neighs: 21000 ave 21000 max 21000 min 520s Histogram: 1 0 0 0 0 0 0 0 0 0 520s 520s Total # of neighbors = 21000 520s Ave neighs/atom = 21 520s Neighbor list builds = 1 520s Dangerous builds = 0 520s System init for write_restart ... 520s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 520s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 520s using 1 OpenMP thread(s) per MPI task 520s Reading restart file ... 520s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 520s restoring atom style atomic from restart 520s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 520s 1 by 1 by 1 MPI processor grid 520s restoring pair style lj/cubic from restart 520s 1000 atoms 520s read_restart CPU = 0.000 seconds 520s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 520s Neighbor list info ... 520s update: every = 1 steps, delay = 0 steps, check = yes 520s max neighbors/atom: 2000, page size: 100000 520s master list distance cutoff = 1.7475372 520s ghost atom cutoff = 1.7475372 520s binsize = 0.87376862, bins = 8 12 12 520s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 525s (1) pair lj/cubic, perpetual 525s attributes: half, newton on 525s pair build: half/bin/atomonly/newton 525s stencil: half/bin/3d 525s bin: standard 525s Setting up Verlet run ... 525s Unit style : lj 525s Current step : 0 525s Time step : 0.001 525s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 525s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 525s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 525s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 525s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 525s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 525s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 525s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 525s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 525s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 525s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 525s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 525s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 525s Loop time of 4.61832 on 1 procs for 10000 steps with 1000 atoms 525s 525s Performance: 187081.087 tau/day, 2165.290 timesteps/s, 2.165 Matom-step/s 525s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 525s 525s MPI task timing breakdown: 525s Section | min time | avg time | max time |%varavg| %total 525s --------------------------------------------------------------- 525s Pair | 3.7822 | 3.7822 | 3.7822 | 0.0 | 81.90 525s Neigh | 0.15751 | 0.15751 | 0.15751 | 0.0 | 3.41 525s Comm | 0.091795 | 0.091795 | 0.091795 | 0.0 | 1.99 525s Output | 0.00046411 | 0.00046411 | 0.00046411 | 0.0 | 0.01 525s Modify | 0.54842 | 0.54842 | 0.54842 | 0.0 | 11.87 525s Other | | 0.03794 | | | 0.82 525s 525s Nlocal: 1000 ave 1000 max 1000 min 525s Histogram: 1 0 0 0 0 0 0 0 0 0 525s Nghost: 1886 ave 1886 max 1886 min 525s Histogram: 1 0 0 0 0 0 0 0 0 0 525s Neighs: 20874 ave 20874 max 20874 min 525s Histogram: 1 0 0 0 0 0 0 0 0 0 525s 525s Total # of neighbors = 20874 525s Ave neighs/atom = 20.874 525s Neighbor list builds = 188 525s Dangerous builds = 0 525s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 525s using 1 OpenMP thread(s) per MPI task 525s Reading restart file ... 525s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 525s restoring atom style atomic from restart 525s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 525s 1 by 1 by 1 MPI processor grid 525s restoring pair style lj/cubic from restart 525s 1000 atoms 525s read_restart CPU = 0.000 seconds 525s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 525s Neighbor list info ... 528s update: every = 1 steps, delay = 0 steps, check = yes 528s max neighbors/atom: 2000, page size: 100000 528s master list distance cutoff = 1.7475372 528s ghost atom cutoff = 1.7475372 528s binsize = 0.87376862, bins = 8 12 12 528s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 528s (1) pair lj/cubic, perpetual 528s attributes: half, newton on 528s pair build: half/bin/atomonly/newton 528s stencil: half/bin/3d 528s bin: standard 528s Setting up Verlet run ... 528s Unit style : lj 528s Current step : 0 528s Time step : 0.001 528s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 528s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 528s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 528s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 528s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 528s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 528s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 528s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 528s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 528s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 528s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 528s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 528s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 528s Loop time of 4.04792 on 1 procs for 10000 steps with 1000 atoms 528s 528s Performance: 213443.078 tau/day, 2470.406 timesteps/s, 2.470 Matom-step/s 528s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 528s 528s MPI task timing breakdown: 528s Section | min time | avg time | max time |%varavg| %total 528s --------------------------------------------------------------- 528s Pair | 3.3667 | 3.3667 | 3.3667 | 0.0 | 83.17 528s Neigh | 0.0092586 | 0.0092586 | 0.0092586 | 0.0 | 0.23 528s Comm | 0.082388 | 0.082388 | 0.082388 | 0.0 | 2.04 528s Output | 0.00047699 | 0.00047699 | 0.00047699 | 0.0 | 0.01 528s Modify | 0.55391 | 0.55391 | 0.55391 | 0.0 | 13.68 528s Other | | 0.03519 | | | 0.87 528s 528s Nlocal: 1000 ave 1000 max 1000 min 528s Histogram: 1 0 0 0 0 0 0 0 0 0 528s Nghost: 1724 ave 1724 max 1724 min 528s Histogram: 1 0 0 0 0 0 0 0 0 0 528s Neighs: 21000 ave 21000 max 21000 min 528s Histogram: 1 0 0 0 0 0 0 0 0 0 528s 528s Total # of neighbors = 21000 528s Ave neighs/atom = 21 528s Neighbor list builds = 11 528s Dangerous builds = 0 528s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 528s using 1 OpenMP thread(s) per MPI task 528s Reading restart file ... 528s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 528s restoring atom style atomic from restart 533s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 533s 1 by 1 by 1 MPI processor grid 533s restoring pair style lj/cubic from restart 533s 1000 atoms 533s read_restart CPU = 0.000 seconds 533s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 533s Neighbor list info ... 533s update: every = 1 steps, delay = 0 steps, check = yes 533s max neighbors/atom: 2000, page size: 100000 533s master list distance cutoff = 1.7475372 533s ghost atom cutoff = 1.7475372 533s binsize = 0.87376862, bins = 8 12 12 533s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 533s (1) pair lj/cubic, perpetual 533s attributes: half, newton on 533s pair build: half/bin/atomonly/newton 533s stencil: half/bin/3d 533s bin: standard 533s Setting up Verlet run ... 533s Unit style : lj 533s Current step : 0 533s Time step : 0.001 533s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 533s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 533s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 533s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 533s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 533s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 533s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 533s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 533s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 533s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 533s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 533s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 533s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 533s Loop time of 4.16831 on 1 procs for 10000 steps with 1000 atoms 533s 533s Performance: 207278.493 tau/day, 2399.057 timesteps/s, 2.399 Matom-step/s 533s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 533s 533s MPI task timing breakdown: 533s Section | min time | avg time | max time |%varavg| %total 533s --------------------------------------------------------------- 533s Pair | 3.414 | 3.414 | 3.414 | 0.0 | 81.90 533s Neigh | 0.079568 | 0.079568 | 0.079568 | 0.0 | 1.91 533s Comm | 0.086054 | 0.086054 | 0.086054 | 0.0 | 2.06 533s Output | 0.00047447 | 0.00047447 | 0.00047447 | 0.0 | 0.01 533s Modify | 0.5517 | 0.5517 | 0.5517 | 0.0 | 13.24 533s Other | | 0.03651 | | | 0.88 533s 533s Nlocal: 1000 ave 1000 max 1000 min 533s Histogram: 1 0 0 0 0 0 0 0 0 0 533s Nghost: 1724 ave 1724 max 1724 min 533s Histogram: 1 0 0 0 0 0 0 0 0 0 533s Neighs: 20654 ave 20654 max 20654 min 533s Histogram: 1 0 0 0 0 0 0 0 0 0 533s 533s Total # of neighbors = 20654 533s Ave neighs/atom = 20.654 533s Neighbor list builds = 94 533s Dangerous builds = 0 533s Total wall time: 0:00:12 533s run: OK 533s autopkgtest [12:04:51]: test hugo: -----------------------] 534s autopkgtest [12:04:52]: test hugo: - - - - - - - - - - results - - - - - - - - - - 534s hugo PASS 534s autopkgtest [12:04:52]: test command1: preparing testbed 626s autopkgtest [12:06:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 627s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 627s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3727 kB] 627s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 627s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 627s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 627s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [654 kB] 627s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 627s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 627s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 627s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4127 kB] 627s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 627s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.3 kB] 627s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 629s Fetched 9270 kB in 2s (5934 kB/s) 629s Reading package lists... 631s Reading package lists... 632s Building dependency tree... 632s Reading state information... 632s Calculating upgrade... 632s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 632s Reading package lists... 633s Building dependency tree... 633s Reading state information... 633s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 634s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 634s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 634s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 634s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 635s Reading package lists... 635s Reading package lists... 635s Building dependency tree... 635s Reading state information... 636s Calculating upgrade... 636s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 636s Reading package lists... 637s Building dependency tree... 637s Reading state information... 637s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 638s autopkgtest [12:06:36]: testbed dpkg architecture: arm64 678s Reading package lists... 678s Building dependency tree... 678s Reading state information... 678s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 679s Starting 2 pkgProblemResolver with broken count: 0 679s Done 679s Done 679s Starting pkgProblemResolver with broken count: 0 679s Starting 2 pkgProblemResolver with broken count: 0 679s Done 680s The following additional packages will be installed: 680s autoconf automake autotools-dev cpp-12 fontconfig-config fonts-dejavu-core 680s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 libamd-comgr2 680s libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 680s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 680s libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7 libevent-dev 680s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 680s libfabric1 libfftw3-double3 libfontconfig1 libgcc-12-dev libgfortran-12-dev 680s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 680s libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 680s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins 680s libhwloc15 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 680s libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 680s liblammps0 liblapack3 liblerc4 libllvm17 liblsan0 libltdl-dev libltdl7 680s libmpc3 libmunge2 libnetcdf19 libnl-3-dev libnl-route-3-dev libnsl-dev 680s libnuma-dev libogg0 libopengl0 libopenmpi-dev libopenmpi3t64 libpciaccess0 680s libpixman-1-0 libpmix-dev libpmix2t64 libpnetcdf0d libproj25 libpython3.12 680s librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 680s libtcl8.6 libtheora0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 680s libucx0 libvoro++1 libvtk9.1 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 680s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 680s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 680s libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev m4 680s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 680s openmpi-common proj-data python3-lammps rpcsvc-proto x11-common zlib1g-dev 680s Suggested packages: 680s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 680s cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev glibc-doc manpages-dev 680s libfftw3-bin libfftw3-dev glew-utils libjs-jquery-ui-docs libtool-doc 680s openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples m4-doc opencl-icd 680s gfortran | fortran-compiler 680s Recommended packages: 680s manpages manpages-dev libc-devtools libgl1-amber-dri javascript-common 680s lammps-doc libtool libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd 680s python3-mpi4py 680s The following NEW packages will be installed: 680s autoconf automake autotools-dev cpp-12 fontconfig-config fonts-dejavu-core 680s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 libamd-comgr2 680s libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 680s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 680s libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7 libevent-dev 680s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 680s libfabric1 libfftw3-double3 libfontconfig1 libgcc-12-dev libgfortran-12-dev 680s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 680s libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-103-1 libhdf5-hl-100 680s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins 680s libhwloc15 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 680s libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 680s liblammps0 liblapack3 liblerc4 libllvm17 liblsan0 libltdl-dev libltdl7 680s libmpc3 libmunge2 libnetcdf19 libnl-3-dev libnl-route-3-dev libnsl-dev 680s libnuma-dev libogg0 libopengl0 libopenmpi-dev libopenmpi3t64 libpciaccess0 680s libpixman-1-0 libpmix-dev libpmix2t64 libpnetcdf0d libproj25 libpython3.12 680s librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 680s libtcl8.6 libtheora0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 680s libucx0 libvoro++1 libvtk9.1 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 680s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 680s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 680s libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev m4 680s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 680s openmpi-common proj-data python3-lammps rpcsvc-proto x11-common zlib1g-dev 680s 0 upgraded, 137 newly installed, 0 to remove and 0 not upgraded. 680s 1 not fully installed or removed. 680s Need to get 173 MB of archives. 680s After this operation, 703 MB of additional disk space will be used. 680s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 680s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 680s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB] 681s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 681s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 681s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 681s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 681s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 681s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12-base arm64 12.3.0-15ubuntu1 [45.5 kB] 681s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 681s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 681s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 cpp-12 arm64 12.3.0-15ubuntu1 [9585 kB] 683s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 683s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 683s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 683s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 683s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 683s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 683s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 683s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 684s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libgcc-12-dev arm64 12.3.0-15ubuntu1 [1157 kB] 684s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12 arm64 12.3.0-15ubuntu1 [19.1 MB] 684s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 684s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 libgfortran-12-dev arm64 12.3.0-15ubuntu1 [471 kB] 684s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 684s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 685s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 685s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 685s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 685s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 685s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 685s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 gfortran-12 arm64 12.3.0-15ubuntu1 [10.1 MB] 685s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libkim-api2 arm64 2.3.0-1 [554 kB] 685s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 685s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 685s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 685s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 685s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 685s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB] 685s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 685s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 685s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 685s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 685s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 685s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 685s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix2t64 arm64 5.0.1-4.1 [655 kB] 685s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 686s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 686s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 686s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 686s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 686s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 687s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 687s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi3t64 arm64 4.1.6-7ubuntu1 [2463 kB] 687s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libpnetcdf0d arm64 1.12.3-2 [842 kB] 687s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 687s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 687s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 687s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 687s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 687s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 687s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 687s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 687s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 687s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 687s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 687s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 687s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 687s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 687s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 687s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 687s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 687s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 687s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 687s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 687s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 688s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 688s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 688s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 688s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2 [41.5 kB] 688s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4 [200 kB] 688s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 688s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libogg0 arm64 1.3.5-3 [22.1 kB] 688s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 688s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 688s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 688s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 688s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 688s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 688s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 688s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 688s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 688s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbmalloc2 arm64 2021.11.0-2ubuntu2 [43.8 kB] 688s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbbind-2-5 arm64 2021.11.0-2ubuntu2 [16.4 kB] 688s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbb12 arm64 2021.11.0-2ubuntu2 [79.9 kB] 688s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 688s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 688s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 688s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 688s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 688s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 688s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 688s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 688s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 689s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libtheora0 arm64 1.1.1+dfsg.1-16.1 [221 kB] 689s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 689s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 689s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 689s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 689s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libvtk9.1 arm64 9.1.0+really9.1.0+dfsg2-7build1 [19.2 MB] 689s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 liblammps0 arm64 20240207+dfsg-1 [6751 kB] 690s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-common all 4.1.6-7ubuntu1 [170 kB] 690s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-3-dev arm64 3.7.0-0.3 [105 kB] 690s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-route-3-dev arm64 3.7.0-0.3 [225 kB] 690s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libibverbs-dev arm64 50.0-2 [686 kB] 690s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma-dev arm64 2.0.18-1 [39.5 kB] 690s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 690s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB] 690s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] 690s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] 690s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 690s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl-dev arm64 2.4.7-7 [170 kB] 690s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-dev arm64 2.10.0-1 [259 kB] 690s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-2.1-7 arm64 2.1.12-stable-9 [138 kB] 690s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-9 [61.3 kB] 690s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-9 [14.6 kB] 690s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-dev arm64 2.1.12-stable-9 [282 kB] 690s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 690s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix-dev arm64 5.0.1-4.1 [4022 kB] 690s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 690s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 690s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-bin arm64 4.1.6-7ubuntu1 [113 kB] 690s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi-dev arm64 4.1.6-7ubuntu1 [865 kB] 690s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-dev arm64 1.15 [3118 B] 690s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 liblammps-dev arm64 20240207+dfsg-1 [112 kB] 690s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 690s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lammps arm64 20240207+dfsg-1 [70.4 kB] 691s Fetched 173 MB in 10s (17.1 MB/s) 691s Selecting previously unselected package libblas3:arm64. 691s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 691s Preparing to unpack .../000-libblas3_3.12.0-3_arm64.deb ... 691s Unpacking libblas3:arm64 (3.12.0-3) ... 691s Selecting previously unselected package libgomp1:arm64. 691s Preparing to unpack .../001-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 691s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 691s Selecting previously unselected package libfftw3-double3:arm64. 691s Preparing to unpack .../002-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ... 691s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 691s Selecting previously unselected package libaec0:arm64. 691s Preparing to unpack .../003-libaec0_1.1.2-1_arm64.deb ... 691s Unpacking libaec0:arm64 (1.1.2-1) ... 691s Selecting previously unselected package libsz2:arm64. 691s Preparing to unpack .../004-libsz2_1.1.2-1_arm64.deb ... 691s Unpacking libsz2:arm64 (1.1.2-1) ... 691s Selecting previously unselected package libhdf5-103-1:arm64. 691s Preparing to unpack .../005-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 691s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 691s Selecting previously unselected package libjpeg-turbo8:arm64. 691s Preparing to unpack .../006-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 691s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 691s Selecting previously unselected package libjpeg8:arm64. 691s Preparing to unpack .../007-libjpeg8_8c-2ubuntu11_arm64.deb ... 691s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 691s Selecting previously unselected package gcc-12-base:arm64. 691s Preparing to unpack .../008-gcc-12-base_12.3.0-15ubuntu1_arm64.deb ... 691s Unpacking gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 691s Selecting previously unselected package libisl23:arm64. 691s Preparing to unpack .../009-libisl23_0.26-3_arm64.deb ... 691s Unpacking libisl23:arm64 (0.26-3) ... 691s Selecting previously unselected package libmpc3:arm64. 691s Preparing to unpack .../010-libmpc3_1.3.1-1_arm64.deb ... 691s Unpacking libmpc3:arm64 (1.3.1-1) ... 691s Selecting previously unselected package cpp-12. 691s Preparing to unpack .../011-cpp-12_12.3.0-15ubuntu1_arm64.deb ... 691s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 692s Selecting previously unselected package libcc1-0:arm64. 692s Preparing to unpack .../012-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 692s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 692s Selecting previously unselected package libitm1:arm64. 692s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_arm64.deb ... 692s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 692s Selecting previously unselected package libatomic1:arm64. 692s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 692s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 692s Selecting previously unselected package libasan8:arm64. 692s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_arm64.deb ... 692s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 692s Selecting previously unselected package liblsan0:arm64. 692s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 692s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 692s Selecting previously unselected package libtsan2:arm64. 692s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 692s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 692s Selecting previously unselected package libubsan1:arm64. 692s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 692s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 692s Selecting previously unselected package libhwasan0:arm64. 692s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 692s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 692s Selecting previously unselected package libgcc-12-dev:arm64. 692s Preparing to unpack .../020-libgcc-12-dev_12.3.0-15ubuntu1_arm64.deb ... 692s Unpacking libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 692s Selecting previously unselected package gcc-12. 692s Preparing to unpack .../021-gcc-12_12.3.0-15ubuntu1_arm64.deb ... 692s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 693s Selecting previously unselected package libgfortran5:arm64. 693s Preparing to unpack .../022-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 693s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 693s Selecting previously unselected package libgfortran-12-dev:arm64. 693s Preparing to unpack .../023-libgfortran-12-dev_12.3.0-15ubuntu1_arm64.deb ... 693s Unpacking libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 693s Selecting previously unselected package libc-dev-bin. 693s Preparing to unpack .../024-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 693s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 693s Selecting previously unselected package linux-libc-dev:arm64. 693s Preparing to unpack .../025-linux-libc-dev_6.8.0-11.11_arm64.deb ... 693s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 693s Selecting previously unselected package libcrypt-dev:arm64. 693s Preparing to unpack .../026-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 693s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 693s Selecting previously unselected package libtirpc-dev:arm64. 693s Preparing to unpack .../027-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 693s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 693s Selecting previously unselected package libnsl-dev:arm64. 693s Preparing to unpack .../028-libnsl-dev_1.3.0-3_arm64.deb ... 693s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 693s Selecting previously unselected package rpcsvc-proto. 693s Preparing to unpack .../029-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 693s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 693s Selecting previously unselected package libc6-dev:arm64. 693s Preparing to unpack .../030-libc6-dev_2.39-0ubuntu2_arm64.deb ... 693s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 693s Selecting previously unselected package gfortran-12. 693s Preparing to unpack .../031-gfortran-12_12.3.0-15ubuntu1_arm64.deb ... 693s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 694s Selecting previously unselected package libkim-api2:arm64. 694s Preparing to unpack .../032-libkim-api2_2.3.0-1_arm64.deb ... 694s Unpacking libkim-api2:arm64 (2.3.0-1) ... 694s Selecting previously unselected package liblapack3:arm64. 694s Preparing to unpack .../033-liblapack3_3.12.0-3_arm64.deb ... 694s Unpacking liblapack3:arm64 (3.12.0-3) ... 694s Selecting previously unselected package libhdf5-hl-100:arm64. 694s Preparing to unpack .../034-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 694s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 694s Selecting previously unselected package libnetcdf19:arm64. 694s Preparing to unpack .../035-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 694s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 694s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 694s Preparing to unpack .../036-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 694s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 694s Selecting previously unselected package librdmacm1t64:arm64. 694s Preparing to unpack .../037-librdmacm1t64_50.0-2_arm64.deb ... 694s Unpacking librdmacm1t64:arm64 (50.0-2) ... 694s Selecting previously unselected package libfabric1:arm64. 694s Preparing to unpack .../038-libfabric1_1.17.0-3_arm64.deb ... 694s Unpacking libfabric1:arm64 (1.17.0-3) ... 694s Selecting previously unselected package libhwloc15:arm64. 694s Preparing to unpack .../039-libhwloc15_2.10.0-1_arm64.deb ... 694s Unpacking libhwloc15:arm64 (2.10.0-1) ... 694s Selecting previously unselected package libmunge2:arm64. 694s Preparing to unpack .../040-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 694s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 694s Selecting previously unselected package libpciaccess0:arm64. 694s Preparing to unpack .../041-libpciaccess0_0.17-3_arm64.deb ... 694s Unpacking libpciaccess0:arm64 (0.17-3) ... 694s Selecting previously unselected package libxnvctrl0:arm64. 694s Preparing to unpack .../042-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 694s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 694s Selecting previously unselected package ocl-icd-libopencl1:arm64. 694s Preparing to unpack .../043-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 694s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 695s Selecting previously unselected package libhwloc-plugins:arm64. 695s Preparing to unpack .../044-libhwloc-plugins_2.10.0-1_arm64.deb ... 695s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 695s Selecting previously unselected package libpmix2t64:arm64. 695s Preparing to unpack .../045-libpmix2t64_5.0.1-4.1_arm64.deb ... 695s Unpacking libpmix2t64:arm64 (5.0.1-4.1) ... 695s Selecting previously unselected package libllvm17:arm64. 695s Preparing to unpack .../046-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 695s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 695s Selecting previously unselected package libamd-comgr2:arm64. 695s Preparing to unpack .../047-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 695s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 696s Selecting previously unselected package libdrm-amdgpu1:arm64. 696s Preparing to unpack .../048-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 696s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 696s Selecting previously unselected package libhsakmt1:arm64. 696s Preparing to unpack .../049-libhsakmt1_5.7.0-1_arm64.deb ... 696s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 696s Selecting previously unselected package libhsa-runtime64-1. 696s Preparing to unpack .../050-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 696s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 696s Selecting previously unselected package libamdhip64-5. 696s Preparing to unpack .../051-libamdhip64-5_5.2.3-12_arm64.deb ... 696s Unpacking libamdhip64-5 (5.2.3-12) ... 696s Selecting previously unselected package libucx0:arm64. 696s Preparing to unpack .../052-libucx0_1.16.0+ds-4_arm64.deb ... 696s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 696s Selecting previously unselected package libopenmpi3t64:arm64. 696s Preparing to unpack .../053-libopenmpi3t64_4.1.6-7ubuntu1_arm64.deb ... 696s Unpacking libopenmpi3t64:arm64 (4.1.6-7ubuntu1) ... 696s Selecting previously unselected package libpnetcdf0d:arm64. 696s Preparing to unpack .../054-libpnetcdf0d_1.12.3-2_arm64.deb ... 696s Unpacking libpnetcdf0d:arm64 (1.12.3-2) ... 696s Selecting previously unselected package libpython3.12:arm64. 696s Preparing to unpack .../055-libpython3.12_3.12.2-1_arm64.deb ... 696s Unpacking libpython3.12:arm64 (3.12.2-1) ... 696s Selecting previously unselected package libvoro++1. 696s Preparing to unpack .../056-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 696s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 696s Selecting previously unselected package libdouble-conversion3:arm64. 696s Preparing to unpack .../057-libdouble-conversion3_3.3.0-1_arm64.deb ... 696s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 696s Selecting previously unselected package libglvnd0:arm64. 696s Preparing to unpack .../058-libglvnd0_1.7.0-1_arm64.deb ... 696s Unpacking libglvnd0:arm64 (1.7.0-1) ... 696s Selecting previously unselected package libglapi-mesa:arm64. 696s Preparing to unpack .../059-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 696s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 696s Selecting previously unselected package libx11-xcb1:arm64. 696s Preparing to unpack .../060-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 696s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 696s Selecting previously unselected package libxcb-dri2-0:arm64. 696s Preparing to unpack .../061-libxcb-dri2-0_1.15-1_arm64.deb ... 696s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 696s Selecting previously unselected package libxcb-dri3-0:arm64. 696s Preparing to unpack .../062-libxcb-dri3-0_1.15-1_arm64.deb ... 696s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 696s Selecting previously unselected package libxcb-glx0:arm64. 696s Preparing to unpack .../063-libxcb-glx0_1.15-1_arm64.deb ... 696s Unpacking libxcb-glx0:arm64 (1.15-1) ... 696s Selecting previously unselected package libxcb-present0:arm64. 696s Preparing to unpack .../064-libxcb-present0_1.15-1_arm64.deb ... 696s Unpacking libxcb-present0:arm64 (1.15-1) ... 696s Selecting previously unselected package libxcb-randr0:arm64. 696s Preparing to unpack .../065-libxcb-randr0_1.15-1_arm64.deb ... 696s Unpacking libxcb-randr0:arm64 (1.15-1) ... 696s Selecting previously unselected package libxcb-shm0:arm64. 696s Preparing to unpack .../066-libxcb-shm0_1.15-1_arm64.deb ... 696s Unpacking libxcb-shm0:arm64 (1.15-1) ... 696s Selecting previously unselected package libxcb-sync1:arm64. 697s Preparing to unpack .../067-libxcb-sync1_1.15-1_arm64.deb ... 697s Unpacking libxcb-sync1:arm64 (1.15-1) ... 697s Selecting previously unselected package libxcb-xfixes0:arm64. 697s Preparing to unpack .../068-libxcb-xfixes0_1.15-1_arm64.deb ... 697s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 697s Selecting previously unselected package libxfixes3:arm64. 697s Preparing to unpack .../069-libxfixes3_1%3a6.0.0-2_arm64.deb ... 697s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 697s Selecting previously unselected package libxshmfence1:arm64. 697s Preparing to unpack .../070-libxshmfence1_1.3-1build4_arm64.deb ... 697s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 697s Selecting previously unselected package libxxf86vm1:arm64. 697s Preparing to unpack .../071-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 697s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 697s Selecting previously unselected package libvulkan1:arm64. 697s Preparing to unpack .../072-libvulkan1_1.3.275.0-1_arm64.deb ... 697s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 697s Selecting previously unselected package libdrm-nouveau2:arm64. 697s Preparing to unpack .../073-libdrm-nouveau2_2.4.120-2_arm64.deb ... 697s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 697s Selecting previously unselected package libdrm-radeon1:arm64. 697s Preparing to unpack .../074-libdrm-radeon1_2.4.120-2_arm64.deb ... 697s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 697s Selecting previously unselected package libgl1-mesa-dri:arm64. 697s Preparing to unpack .../075-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 697s Unpacking libgl1-mesa-dri:arm64 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liblerc4:arm64. 698s Preparing to unpack .../087-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 698s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 698s Selecting previously unselected package libsharpyuv0:arm64. 698s Preparing to unpack .../088-libsharpyuv0_1.3.2-0.4_arm64.deb ... 698s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 698s Selecting previously unselected package libwebp7:arm64. 698s Preparing to unpack .../089-libwebp7_1.3.2-0.4_arm64.deb ... 698s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 698s Selecting previously unselected package libtiff6:arm64. 698s Preparing to unpack .../090-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 698s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 698s Selecting previously unselected package libproj25:arm64. 698s Preparing to unpack .../091-libproj25_9.3.1-1_arm64.deb ... 698s Unpacking libproj25:arm64 (9.3.1-1) ... 698s Selecting previously unselected package libtbbmalloc2:arm64. 698s Preparing to unpack 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(2.37-8) ... 701s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 701s Setting up libltdl7:arm64 (2.4.7-7) ... 701s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 701s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 701s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 701s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 701s Setting up autoconf (2.71-3) ... 701s Setting up libwebp7:arm64 (1.3.2-0.4) ... 701s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 701s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 701s Setting up libnl-3-dev:arm64 (3.7.0-0.3) ... 701s Setting up libnsl-dev:arm64 (1.3.0-3) ... 701s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 701s Setting up libxshmfence1:arm64 (1.3-1build4) ... 701s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 701s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 701s Setting up libxcb-randr0:arm64 (1.15-1) ... 701s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 701s Setting up openmpi-common (4.1.6-7ubuntu1) ... 701s Setting up librdmacm1t64:arm64 (50.0-2) ... 701s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 701s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 701s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 701s Setting up libisl23:arm64 (0.26-3) ... 701s Setting up libc-dev-bin (2.39-0ubuntu2) ... 701s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 701s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 701s Setting up libpython3.12:arm64 (3.12.2-1) ... 701s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 702s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 702s Setting up libsz2:arm64 (1.1.2-1) ... 702s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 702s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 702s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 702s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 702s Setting up automake (1:1.16.5-1.3ubuntu1) ... 702s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 702s Setting up libfabric1:arm64 (1.17.0-3) ... 702s Setting up liblapack3:arm64 (3.12.0-3) ... 702s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 702s Setting up cpp-12 (12.3.0-15ubuntu1) ... 702s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 702s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 702s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 702s Setting up libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 702s Setting up libnl-route-3-dev:arm64 (3.7.0-0.3) ... 702s Setting up libltdl-dev:arm64 (2.4.7-7) ... 702s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 702s Setting up libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 702s Setting up libevent-dev (2.1.12-stable-9) ... 702s Setting up libpmix2t64:arm64 (5.0.1-4.1) ... 702s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 702s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 702s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 702s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 702s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 702s Setting up libhsakmt1:arm64 (5.7.0-1) ... 702s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 702s Setting up libxft2:arm64 (2.3.6-1) ... 702s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 702s Setting up libglx0:arm64 (1.7.0-1) ... 702s Setting up libproj25:arm64 (9.3.1-1) ... 702s Setting up libtk8.6:arm64 (8.6.13-2) ... 702s Setting up libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 702s Setting up libtbb12:arm64 (2021.11.0-2ubuntu2) ... 702s Setting up libibverbs-dev:arm64 (50.0-2) ... 702s Setting up libcairo2:arm64 (1.18.0-1) ... 702s Setting up libnuma-dev:arm64 (2.0.18-1) ... 702s Setting up libgl1:arm64 (1.7.0-1) ... 702s Setting up gcc-12 (12.3.0-15ubuntu1) ... 702s Setting up libglew2.2:arm64 (2.2.0-4) ... 702s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 702s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 702s Setting up libhsa-runtime64-1 (5.7.1-1) ... 702s Setting up libtheora0:arm64 (1.1.1+dfsg.1-16.1) ... 702s Setting up libhwloc-dev:arm64 (2.10.0-1) ... 702s Setting up libpmix-dev:arm64 (5.0.1-4.1) ... 702s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 702s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 702s Setting up libamdhip64-5 (5.2.3-12) ... 702s Setting up libucx0:arm64 (1.16.0+ds-4) ... 702s Setting up libkim-api2:arm64 (2.3.0-1) ... 702s Setting up libopenmpi3t64:arm64 (4.1.6-7ubuntu1) ... 702s Setting up libpnetcdf0d:arm64 (1.12.3-2) ... 702s Setting up openmpi-bin (4.1.6-7ubuntu1) ... 702s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 702s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 702s Setting up mpi-default-bin (1.15) ... 702s Setting up libvtk9.1:arm64 (9.1.0+really9.1.0+dfsg2-7build1) ... 702s Setting up liblammps0:arm64 (20240207+dfsg-1) ... 702s Setting up libopenmpi-dev:arm64 (4.1.6-7ubuntu1) ... 702s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 702s Setting up mpi-default-dev (1.15) ... 702s Setting up liblammps-dev (20240207+dfsg-1) ... 702s Setting up python3-lammps (20240207+dfsg-1) ... 702s Setting up autopkgtest-satdep (0) ... 702s Processing triggers for man-db (2.12.0-3) ... 703s Processing triggers for install-info (7.1-3) ... 703s Processing triggers for libc-bin (2.39-0ubuntu2) ... 710s (Reading database ... 82088 files and directories currently installed.) 710s Removing autopkgtest-satdep (0) ... 733s autopkgtest [12:08:11]: test command1: cd python/examples; python3 demo.py 733s autopkgtest [12:08:11]: test command1: [----------------------- 734s LAMMPS (7 Feb 2024 - Update 1) 734s 734s Python output: 734s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 734s Temperature from compute = 0.7683848148006238 734s Energy from equal-style variable = -5.774392400140566 734s Velocity component from atom-style variable = -0.1669643026996425 734s Volume from get_thermo = 4738.213693437576 734s Natoms from get_natoms = 4000 734s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 734s Changed x[0][0] via scatter_atoms = 17.651271530416228 734s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 734s using 1 OpenMP thread(s) per MPI task 734s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 734s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 734s 1 by 1 by 1 MPI processor grid 734s Created 4000 atoms 734s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 734s create_atoms CPU = 0.001 seconds 734s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 734s Neighbor list info ... 734s update: every = 20 steps, delay = 0 steps, check = no 734s max neighbors/atom: 2000, page size: 100000 734s master list distance cutoff = 2.8 734s ghost atom cutoff = 2.8 734s binsize = 1.4, bins = 12 12 12 734s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 734s (1) pair lj/cut, perpetual 734s attributes: half, newton on 734s pair build: half/bin/atomonly/newton 734s stencil: half/bin/3d 734s bin: standard 734s Setting up Verlet run ... 734s Unit style : lj 734s Current step : 0 734s Time step : 0.005 734s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 734s Step Temp E_pair E_mol TotEng Press 734s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 734s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 734s Loop time of 0.218326 on 1 procs for 100 steps with 4000 atoms 734s 734s Performance: 197869.554 tau/day, 458.031 timesteps/s, 1.832 Matom-step/s 734s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 734s 734s MPI task timing breakdown: 734s Section | min time | avg time | max time |%varavg| %total 734s --------------------------------------------------------------- 734s Pair | 0.18321 | 0.18321 | 0.18321 | 0.0 | 83.92 734s Neigh | 0.026525 | 0.026525 | 0.026525 | 0.0 | 12.15 734s Comm | 0.0042027 | 0.0042027 | 0.0042027 | 0.0 | 1.92 734s Output | 3.4442e-05 | 3.4442e-05 | 3.4442e-05 | 0.0 | 0.02 734s Modify | 0.0037369 | 0.0037369 | 0.0037369 | 0.0 | 1.71 734s Other | | 0.0006126 | | | 0.28 734s 734s Nlocal: 4000 ave 4000 max 4000 min 734s Histogram: 1 0 0 0 0 0 0 0 0 0 734s Nghost: 5758 ave 5758 max 5758 min 734s Histogram: 1 0 0 0 0 0 0 0 0 0 734s Neighs: 150488 ave 150488 max 150488 min 734s Histogram: 1 0 0 0 0 0 0 0 0 0 734s 734s Total # of neighbors = 150488 734s Ave neighs/atom = 37.622 734s Neighbor list builds = 5 734s Dangerous builds not checked 734s Total wall time: 0:00:00 734s autopkgtest [12:08:12]: test command1: -----------------------] 735s autopkgtest [12:08:13]: test command1: - - - - - - - - - - results - - - - - - - - - - 735s command1 PASS 735s autopkgtest [12:08:13]: @@@@@@@@@@@@@@@@@@@@ summary 735s crack PASS 735s dipole PASS 735s ellipse PASS 735s flow PASS 735s friction PASS 735s hugo PASS 735s command1 PASS 748s Creating nova instance adt-noble-arm64-lammps-20240318-115557-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240318.img (UUID 6b9ea2ac-1792-4f95-a56d-e128e96ab6e9)... 748s Creating nova instance adt-noble-arm64-lammps-20240318-115557-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240318.img (UUID 6b9ea2ac-1792-4f95-a56d-e128e96ab6e9)...