0s autopkgtest [14:51:44]: starting date and time: 2024-03-16 14:51:44+0000 0s autopkgtest [14:51:44]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [14:51:44]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zyyb9a1t/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lammps,src:curl,src:db5.3,src:gnutls28,src:hdf5,src:libpng1.6,src:libpsl,src:netcdf,src:nettle,src:openmpi,src:openssl,src:orthanc-python,src:pmix,src:python3.12,src:readline,src:vtk9,src:wp2latex --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=lammps/20240207+dfsg-1.1build2 curl/8.5.0-2ubuntu7 db5.3/5.3.28+dfsg2-5build1 gnutls28/3.8.3-1.1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu3 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 netcdf/1:4.9.2-5ubuntu3 nettle/3.9.1-2.2 openmpi/4.1.6-6ubuntu1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 pmix/5.0.1-4.1 python3.12/3.12.2-4build2 readline/8.2-3.1 vtk9/9.1.0+really9.1.0+dfsg2-7.1build2 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-8.secgroup --name adt-noble-arm64-lammps-20240316-145144-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 85s autopkgtest [14:53:09]: testbed dpkg architecture: arm64 86s autopkgtest [14:53:10]: testbed apt version: 2.7.12 86s autopkgtest [14:53:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 86s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 87s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 87s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 87s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 87s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 87s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 87s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 87s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 87s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4007 kB] 87s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 87s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 87s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 89s Fetched 9093 kB in 2s (5644 kB/s) 89s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Calculating upgrade... 93s The following packages will be REMOVED: 93s libreadline8 libssl3 93s The following NEW packages will be installed: 93s libreadline8t64 libssl3t64 93s The following packages have been kept back: 93s curl libpython3.12-minimal libpython3.12-stdlib python3.12 93s python3.12-minimal 93s The following packages will be upgraded: 93s openssl readline-common ubuntu-minimal ubuntu-standard 93s 4 upgraded, 2 newly installed, 2 to remove and 5 not upgraded. 93s Need to get 2984 kB of archives. 93s After this operation, 140 kB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 93s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 93s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 94s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 94s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 94s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 94s Fetched 2984 kB in 1s (3799 kB/s) 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 95s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 95s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 95s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 95s parted depends on libreadline8 (>= 6.0). 95s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 95s gpgsm depends on libreadline8 (>= 6.0). 95s gpgconf depends on libreadline8 (>= 6.0). 95s gpg depends on libreadline8 (>= 6.0). 95s gawk depends on libreadline8 (>= 6.0). 95s fdisk depends on libreadline8 (>= 6.0). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 95s Removing libreadline8:arm64 (8.2-3) ... 95s Selecting previously unselected package libreadline8t64:arm64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74746 files and directories currently installed.) 95s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 95s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 95s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 95s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 95s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 95s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 95s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 95s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 95s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 95s wget depends on libssl3 (>= 3.0.0). 95s u-boot-tools depends on libssl3 (>= 3.0.0). 95s tnftp depends on libssl3 (>= 3.0.0). 95s tcpdump depends on libssl3 (>= 3.0.0). 95s systemd-resolved depends on libssl3 (>= 3.0.0). 95s systemd depends on libssl3 (>= 3.0.0). 95s sudo depends on libssl3 (>= 3.0.0). 95s sbsigntool depends on libssl3 (>= 3.0.0). 95s rsync depends on libssl3 (>= 3.0.0). 95s python3-cryptography depends on libssl3 (>= 3.0.0). 95s openssh-server depends on libssl3 (>= 3.0.10). 95s openssh-client depends on libssl3 (>= 3.0.10). 95s mtd-utils depends on libssl3 (>= 3.0.0). 95s mokutil depends on libssl3 (>= 3.0.0). 95s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 95s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 95s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 95s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 95s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 95s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 95s libnvme1 depends on libssl3 (>= 3.0.0). 95s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 95s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 95s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 95s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 95s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 95s kmod depends on libssl3 (>= 3.0.0). 95s dhcpcd-base depends on libssl3 (>= 3.0.0). 95s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 95s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 95s Selecting previously unselected package libssl3t64:arm64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 95s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 95s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 95s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 95s Unpacking ubuntu-minimal (1.536) over (1.535) ... 95s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 95s Unpacking ubuntu-standard (1.536) over (1.535) ... 95s Setting up ubuntu-minimal (1.536) ... 95s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 95s Setting up ubuntu-standard (1.536) ... 95s Setting up openssl (3.0.13-0ubuntu1) ... 95s Setting up readline-common (8.2-3.1) ... 95s Setting up libreadline8t64:arm64 (8.2-3.1) ... 95s Processing triggers for libc-bin (2.39-0ubuntu2) ... 95s Processing triggers for man-db (2.12.0-3) ... 96s Processing triggers for install-info (7.1-3) ... 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. 98s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 98s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 98s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 98s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 99s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Calculating upgrade... 101s The following packages have been kept back: 101s curl libpython3.12-minimal libpython3.12-stdlib python3.12 101s python3.12-minimal 101s 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. 105s autopkgtest [14:53:29]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 105s autopkgtest [14:53:29]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 115s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe lammps 20240207+dfsg-1.1build2 (dsc) [3286 B] 115s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe lammps 20240207+dfsg-1.1build2 (tar) [153 MB] 115s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe lammps 20240207+dfsg-1.1build2 (diff) [17.1 kB] 115s gpgv: Signature made Sat Mar 16 06:29:40 2024 UTC 115s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 115s gpgv: issuer "steve.langasek@ubuntu.com" 115s gpgv: Can't check signature: No public key 115s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.1build2.dsc: no acceptable signature found 123s autopkgtest [14:53:47]: testing package lammps version 20240207+dfsg-1.1build2 124s autopkgtest [14:53:48]: build not needed 143s autopkgtest [14:54:07]: test crack: preparing testbed 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Starting pkgProblemResolver with broken count: 0 146s Starting 2 pkgProblemResolver with broken count: 0 146s Done 147s The following additional packages will be installed: 147s cpp-12 curl fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-12 147s gcc-12-base gfortran-12 lammps lammps-data libaec0 libamd-comgr2 147s libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 147s libcc1-0 libcrypt-dev libcurl3t64-gnutls libcurl4t64 libdb5.3t64 libdeflate0 147s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 147s libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfontconfig1 147s libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri 147s libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 147s libgnutls30t64 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhogweed6t64 147s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins libhwloc15 147s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 147s liblammps0t64 liblapack3 liblerc4 libllvm17 liblsan0 libmpc3 libmunge2 147s libnetcdf19t64 libnettle8t64 libnsl-dev libogg0 libopengl0 libopenmpi3t64 147s libpciaccess0 libpixman-1-0 libpmix2t64 libpnetcdf0d libpng16-16t64 147s libproj25 libpsl5t64 libpython3.12-minimal libpython3.12-stdlib 147s libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 147s libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtirpc-dev libtk8.6 libtsan2 147s libubsan1 libucx0 libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 147s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 147s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 147s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev 147s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 147s python3.12 python3.12-minimal rpcsvc-proto x11-common 147s Suggested packages: 147s gcc-12-locales cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev 147s openkim-models glibc-doc manpages-dev libfftw3-bin libfftw3-dev glew-utils 147s gnutls-bin proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples opencl-icd gfortran 147s | fortran-compiler python3.12-venv python3.12-doc binfmt-support 147s Recommended packages: 147s lammps-doc manpages manpages-dev libc-devtools libgl1-amber-dri 147s mesa-vulkan-drivers | vulkan-icd 147s The following packages will be REMOVED: 147s libcurl3-gnutls libcurl4 libdb5.3 libgnutls30 libhogweed6 libnettle8 147s libpng16-16 libpsl5 147s The following NEW packages will be installed: 147s autopkgtest-satdep cpp-12 fontconfig-config fonts-dejavu-core 147s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 147s libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin 147s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl3t64-gnutls libcurl4t64 147s libdb5.3t64 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 147s libdrm-radeon1 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 147s libfontconfig1 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 147s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 147s libglx0 libgnutls30t64 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 147s libhogweed6t64 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins 147s libhwloc15 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 147s libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17 liblsan0 libmpc3 147s libmunge2 libnetcdf19t64 libnettle8t64 libnsl-dev libogg0 libopengl0 147s libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix2t64 libpnetcdf0d 147s libpng16-16t64 libproj25 libpsl5t64 libpython3.12t64 librdmacm1t64 147s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 147s libtheora0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libucx0 147s libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 147s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 147s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 147s libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev mpi-default-bin 147s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data rpcsvc-proto 147s x11-common 147s The following packages will be upgraded: 147s curl libpython3.12-minimal libpython3.12-stdlib python3.12 147s python3.12-minimal 147s 5 upgraded, 125 newly installed, 8 to remove and 0 not upgraded. 147s Need to get 182 MB/182 MB of archives. 147s After this operation, 719 MB of additional disk space will be used. 147s Get:1 /tmp/autopkgtest.jXH7B5/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 147s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnettle8t64 arm64 3.9.1-2.2 [192 kB] 147s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libhogweed6t64 arm64 3.9.1-2.2 [199 kB] 147s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgnutls30t64 arm64 3.8.3-1.1ubuntu2 [1042 kB] 148s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 148s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 148s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 148s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl3t64-gnutls arm64 8.5.0-2ubuntu7 [327 kB] 148s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.12 arm64 3.12.2-4build2 [645 kB] 148s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.12-minimal arm64 3.12.2-4build2 [2189 kB] 148s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12-minimal arm64 3.12.2-4build2 [829 kB] 148s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12-stdlib arm64 3.12.2-4build2 [2002 kB] 148s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-5build1 [719 kB] 148s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 148s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12-base arm64 12.3.0-15ubuntu1 [45.5 kB] 148s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 148s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 148s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 cpp-12 arm64 12.3.0-15ubuntu1 [9585 kB] 149s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 149s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 149s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 149s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 149s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 149s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 149s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 149s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 149s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 149s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 149s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 149s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 149s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 libgcc-12-dev arm64 12.3.0-15ubuntu1 [1157 kB] 149s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12 arm64 12.3.0-15ubuntu1 [19.1 MB] 149s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 149s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libgfortran-12-dev arm64 12.3.0-15ubuntu1 [471 kB] 150s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 150s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 150s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 150s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 150s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 150s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 150s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 150s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 gfortran-12 arm64 12.3.0-15ubuntu1 [10.1 MB] 150s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 lammps-data all 20240207+dfsg-1.1build2 [9706 kB] 150s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 150s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 152s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 152s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 152s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 152s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 152s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 152s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 152s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 152s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 152s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 152s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 152s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 152s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 152s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 152s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 152s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 152s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 152s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 152s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 152s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB] 152s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB] 152s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 152s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 152s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 152s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 152s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 152s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 152s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 152s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 152s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 152s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 152s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 152s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 152s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 153s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 153s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 153s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 153s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 153s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 153s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2 [41.5 kB] 153s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4 [200 kB] 153s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 153s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [1192 kB] 153s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu3 [55.8 kB] 153s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 153s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 153s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 153s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 153s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libkim-api2 arm64 2.3.0-1 [554 kB] 153s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 153s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libnetcdf19t64 arm64 1:4.9.2-5ubuntu3 [471 kB] 153s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 153s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 153s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 153s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 153s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 153s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix2t64 arm64 5.0.1-4.1 [655 kB] 153s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 153s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi3t64 arm64 4.1.6-6ubuntu1 [2463 kB] 153s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libpnetcdf0d arm64 1.12.3-2 [842 kB] 154s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12t64 arm64 3.12.2-4build2 [2279 kB] 154s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 154s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libogg0 arm64 1.3.5-3 [22.1 kB] 154s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 154s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 154s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 154s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 154s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 154s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 154s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 154s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 154s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbmalloc2 arm64 2021.11.0-2ubuntu2 [43.8 kB] 154s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbbind-2-5 arm64 2021.11.0-2ubuntu2 [16.4 kB] 154s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbb12 arm64 2021.11.0-2ubuntu2 [79.9 kB] 154s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 154s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libtheora0 arm64 1.1.1+dfsg.1-16.1 [221 kB] 154s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 154s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 154s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 154s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 154s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libvtk9.1t64 arm64 9.1.0+really9.1.0+dfsg2-7.1build2 [19.2 MB] 154s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 liblammps0t64 arm64 20240207+dfsg-1.1build2 [6752 kB] 155s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-common all 4.1.6-6ubuntu1 [170 kB] 155s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-bin arm64 4.1.6-6ubuntu1 [113 kB] 155s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 155s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 lammps arm64 20240207+dfsg-1.1build2 [14.9 kB] 156s Fetched 182 MB in 8s (23.9 MB/s) 156s dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: 156s librtmp1:arm64 depends on libhogweed6. 156s libjcat1:arm64 depends on libhogweed6. 156s libgnutls30:arm64 depends on libhogweed6 (>= 3.6). 156s 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74768 files and directories currently installed.) 156s Removing libhogweed6:arm64 (3.9.1-2) ... 156s dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: 156s librtmp1:arm64 depends on libnettle8. 156s libgnutls30:arm64 depends on libnettle8 (>= 3.9~). 156s libcurl3-gnutls:arm64 depends on libnettle8. 156s libarchive13:arm64 depends on libnettle8. 156s 156s Removing libnettle8:arm64 (3.9.1-2) ... 156s Selecting previously unselected package libnettle8t64:arm64. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 156s Preparing to unpack .../libnettle8t64_3.9.1-2.2_arm64.deb ... 156s Unpacking libnettle8t64:arm64 (3.9.1-2.2) ... 156s Selecting previously unselected package libhogweed6t64:arm64. 156s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_arm64.deb ... 156s Unpacking libhogweed6t64:arm64 (3.9.1-2.2) ... 156s dpkg: libgnutls30:arm64: dependency problems, but removing anyway as you requested: 156s u-boot-tools depends on libgnutls30 (>= 3.7.3). 156s librtmp1:arm64 depends on libgnutls30 (>= 3.7.2). 156s libldap2:arm64 depends on libgnutls30 (>= 3.8.2). 156s libjcat1:arm64 depends on libgnutls30 (>= 3.7.3). 156s libcurl3-gnutls:arm64 depends on libgnutls30 (>= 3.8.2). 156s fwupd depends on libgnutls30 (>= 3.7.3). 156s dirmngr depends on libgnutls30 (>= 3.8.1). 156s apt depends on libgnutls30 (>= 3.8.1). 156s 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 156s Removing libgnutls30:arm64 (3.8.3-1ubuntu1) ... 156s Selecting previously unselected package libgnutls30t64:arm64. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 156s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_arm64.deb ... 156s Unpacking libgnutls30t64:arm64 (3.8.3-1.1ubuntu2) ... 156s dpkg: libcurl4:arm64: dependency problems, but removing anyway as you requested: 156s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 156s 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74789 files and directories currently installed.) 156s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 156s Selecting previously unselected package libcurl4t64:arm64. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74784 files and directories currently installed.) 156s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 156s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 156s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 156s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 156s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 156s wget depends on libpsl5 (>= 0.16.0). 156s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 156s 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74790 files and directories currently installed.) 156s Removing libpsl5:arm64 (0.21.2-1build1) ... 156s Selecting previously unselected package libpsl5t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 157s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 157s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 157s dpkg: libcurl3-gnutls:arm64: dependency problems, but removing anyway as you requested: 157s libfwupd2:arm64 depends on libcurl3-gnutls (>= 7.63.0). 157s fwupd depends on libcurl3-gnutls (>= 7.63.0). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74791 files and directories currently installed.) 157s Removing libcurl3-gnutls:arm64 (8.5.0-2ubuntu2) ... 157s Selecting previously unselected package libcurl3t64-gnutls:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74784 files and directories currently installed.) 157s Preparing to unpack .../libcurl3t64-gnutls_8.5.0-2ubuntu7_arm64.deb ... 157s Unpacking libcurl3t64-gnutls:arm64 (8.5.0-2ubuntu7) ... 157s Preparing to unpack .../python3.12_3.12.2-4build2_arm64.deb ... 157s Unpacking python3.12 (3.12.2-4build2) over (3.12.2-1) ... 157s Preparing to unpack .../python3.12-minimal_3.12.2-4build2_arm64.deb ... 157s Unpacking python3.12-minimal (3.12.2-4build2) over (3.12.2-1) ... 157s Preparing to unpack .../libpython3.12-minimal_3.12.2-4build2_arm64.deb ... 157s Unpacking libpython3.12-minimal:arm64 (3.12.2-4build2) over (3.12.2-1) ... 157s Preparing to unpack .../libpython3.12-stdlib_3.12.2-4build2_arm64.deb ... 157s Unpacking libpython3.12-stdlib:arm64 (3.12.2-4build2) over (3.12.2-1) ... 158s dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: 158s libsasl2-modules-db:arm64 depends on libdb5.3. 158s libperl5.38:arm64 depends on libdb5.3. 158s libpam-modules:arm64 depends on libdb5.3. 158s iproute2 depends on libdb5.3. 158s apt-utils depends on libdb5.3. 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74789 files and directories currently installed.) 158s Removing libdb5.3:arm64 (5.3.28+dfsg2-4) ... 158s Selecting previously unselected package libdb5.3t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74783 files and directories currently installed.) 158s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5build1_arm64.deb ... 158s Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-5build1) ... 158s Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-5build1) ... 158s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 158s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 158s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74789 files and directories currently installed.) 158s Removing libpng16-16:arm64 (1.6.43-1) ... 158s Selecting previously unselected package libpng16-16t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 158s Preparing to unpack .../000-libpng16-16t64_1.6.43-3_arm64.deb ... 158s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 158s Selecting previously unselected package gcc-12-base:arm64. 158s Preparing to unpack .../001-gcc-12-base_12.3.0-15ubuntu1_arm64.deb ... 158s Unpacking gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 158s Selecting previously unselected package libisl23:arm64. 158s Preparing to unpack .../002-libisl23_0.26-3_arm64.deb ... 158s Unpacking libisl23:arm64 (0.26-3) ... 158s Selecting previously unselected package libmpc3:arm64. 158s Preparing to unpack .../003-libmpc3_1.3.1-1_arm64.deb ... 158s Unpacking libmpc3:arm64 (1.3.1-1) ... 158s Selecting previously unselected package cpp-12. 158s Preparing to unpack .../004-cpp-12_12.3.0-15ubuntu1_arm64.deb ... 158s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 158s Selecting previously unselected package fonts-dejavu-mono. 158s Preparing to unpack .../005-fonts-dejavu-mono_2.37-8_all.deb ... 158s Unpacking fonts-dejavu-mono (2.37-8) ... 158s Selecting previously unselected package fonts-dejavu-core. 158s Preparing to unpack .../006-fonts-dejavu-core_2.37-8_all.deb ... 159s Unpacking fonts-dejavu-core (2.37-8) ... 159s Selecting previously unselected package fontconfig-config. 159s Preparing to unpack .../007-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 159s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 159s Selecting previously unselected package libcc1-0:arm64. 159s Preparing to unpack .../008-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libgomp1:arm64. 159s Preparing to unpack .../009-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libitm1:arm64. 159s Preparing to unpack .../010-libitm1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libatomic1:arm64. 159s Preparing to unpack .../011-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libasan8:arm64. 159s Preparing to unpack .../012-libasan8_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package liblsan0:arm64. 159s Preparing to unpack .../013-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libtsan2:arm64. 159s Preparing to unpack .../014-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libubsan1:arm64. 159s Preparing to unpack .../015-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libhwasan0:arm64. 159s Preparing to unpack .../016-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 159s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 159s Selecting previously unselected package libgcc-12-dev:arm64. 159s Preparing to unpack .../017-libgcc-12-dev_12.3.0-15ubuntu1_arm64.deb ... 159s Unpacking libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 160s Selecting previously unselected package gcc-12. 160s Preparing to unpack .../018-gcc-12_12.3.0-15ubuntu1_arm64.deb ... 160s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 160s Selecting previously unselected package libgfortran5:arm64. 160s Preparing to unpack .../019-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 160s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 160s Selecting previously unselected package libgfortran-12-dev:arm64. 160s Preparing to unpack .../020-libgfortran-12-dev_12.3.0-15ubuntu1_arm64.deb ... 160s Unpacking libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 160s Selecting previously unselected package libc-dev-bin. 160s Preparing to unpack .../021-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 160s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 160s Selecting previously unselected package linux-libc-dev:arm64. 160s Preparing to unpack .../022-linux-libc-dev_6.8.0-11.11_arm64.deb ... 160s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 161s Selecting previously unselected package libcrypt-dev:arm64. 161s Preparing to unpack .../023-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 161s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 161s Selecting previously unselected package libtirpc-dev:arm64. 161s Preparing to unpack .../024-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 161s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 161s Selecting previously unselected package libnsl-dev:arm64. 161s Preparing to unpack .../025-libnsl-dev_1.3.0-3_arm64.deb ... 161s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 161s Selecting previously unselected package rpcsvc-proto. 161s Preparing to unpack .../026-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 161s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 161s Selecting previously unselected package libc6-dev:arm64. 161s Preparing to unpack .../027-libc6-dev_2.39-0ubuntu2_arm64.deb ... 161s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 161s Selecting previously unselected package gfortran-12. 161s Preparing to unpack .../028-gfortran-12_12.3.0-15ubuntu1_arm64.deb ... 161s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 161s Selecting previously unselected package lammps-data. 161s Preparing to unpack .../029-lammps-data_20240207+dfsg-1.1build2_all.deb ... 161s Unpacking lammps-data (20240207+dfsg-1.1build2) ... 161s Selecting previously unselected package libaec0:arm64. 161s Preparing to unpack .../030-libaec0_1.1.2-1_arm64.deb ... 161s Unpacking libaec0:arm64 (1.1.2-1) ... 161s Selecting previously unselected package libllvm17:arm64. 161s Preparing to unpack .../031-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 161s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 162s Selecting previously unselected package libamd-comgr2:arm64. 162s Preparing to unpack .../032-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 162s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 163s Selecting previously unselected package libdrm-amdgpu1:arm64. 163s Preparing to unpack .../033-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 163s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 163s Selecting previously unselected package libhsakmt1:arm64. 163s Preparing to unpack .../034-libhsakmt1_5.7.0-1_arm64.deb ... 163s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 163s Selecting previously unselected package libhsa-runtime64-1. 163s Preparing to unpack .../035-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 163s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 163s Selecting previously unselected package libamdhip64-5. 163s Preparing to unpack .../036-libamdhip64-5_5.2.3-12_arm64.deb ... 163s Unpacking libamdhip64-5 (5.2.3-12) ... 163s Selecting previously unselected package libblas3:arm64. 163s Preparing to unpack .../037-libblas3_3.12.0-3_arm64.deb ... 163s Unpacking libblas3:arm64 (3.12.0-3) ... 163s Selecting previously unselected package libfontconfig1:arm64. 163s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 163s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 163s Selecting previously unselected package libpixman-1-0:arm64. 163s Preparing to unpack .../039-libpixman-1-0_0.42.2-1_arm64.deb ... 163s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 163s Selecting previously unselected package libxcb-render0:arm64. 163s Preparing to unpack .../040-libxcb-render0_1.15-1_arm64.deb ... 163s Unpacking libxcb-render0:arm64 (1.15-1) ... 163s Selecting previously unselected package libxcb-shm0:arm64. 163s Preparing to unpack .../041-libxcb-shm0_1.15-1_arm64.deb ... 163s Unpacking libxcb-shm0:arm64 (1.15-1) ... 163s Selecting previously unselected package libxrender1:arm64. 163s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 163s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 163s Selecting previously unselected package libcairo2:arm64. 163s Preparing to unpack .../043-libcairo2_1.18.0-1_arm64.deb ... 163s Unpacking libcairo2:arm64 (1.18.0-1) ... 163s Selecting previously unselected package libdeflate0:arm64. 163s Preparing to unpack .../044-libdeflate0_1.19-1_arm64.deb ... 163s Unpacking libdeflate0:arm64 (1.19-1) ... 163s Selecting previously unselected package libdouble-conversion3:arm64. 163s Preparing to unpack .../045-libdouble-conversion3_3.3.0-1_arm64.deb ... 163s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 163s Selecting previously unselected package libdrm-nouveau2:arm64. 163s Preparing to unpack .../046-libdrm-nouveau2_2.4.120-2_arm64.deb ... 163s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 163s Selecting previously unselected package libdrm-radeon1:arm64. 163s Preparing to unpack .../047-libdrm-radeon1_2.4.120-2_arm64.deb ... 163s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 163s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 163s Preparing to unpack .../048-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 163s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 163s Selecting previously unselected package librdmacm1t64:arm64. 163s Preparing to unpack .../049-librdmacm1t64_50.0-2_arm64.deb ... 163s Unpacking librdmacm1t64:arm64 (50.0-2) ... 163s Selecting previously unselected package libfabric1:arm64. 163s Preparing to unpack .../050-libfabric1_1.17.0-3_arm64.deb ... 163s Unpacking libfabric1:arm64 (1.17.0-3) ... 163s Selecting previously unselected package libfftw3-double3:arm64. 163s Preparing to unpack .../051-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ... 163s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 163s Selecting previously unselected package libvulkan1:arm64. 163s Preparing to unpack .../052-libvulkan1_1.3.275.0-1_arm64.deb ... 163s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 163s Selecting previously unselected package libglapi-mesa:arm64. 163s Preparing to unpack .../053-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 163s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 163s Selecting previously unselected package libxcb-dri3-0:arm64. 163s Preparing to unpack .../054-libxcb-dri3-0_1.15-1_arm64.deb ... 163s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 163s Selecting previously unselected package libgl1-mesa-dri:arm64. 164s Preparing to unpack .../055-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 164s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 164s Selecting previously unselected package libglvnd0:arm64. 164s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 164s Unpacking libglvnd0:arm64 (1.7.0-1) ... 164s Selecting previously unselected package libx11-xcb1:arm64. 164s Preparing to unpack .../057-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 164s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 164s Selecting previously unselected package libxcb-dri2-0:arm64. 164s Preparing to unpack .../058-libxcb-dri2-0_1.15-1_arm64.deb ... 164s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 164s Selecting previously unselected package libxcb-glx0:arm64. 164s Preparing to unpack .../059-libxcb-glx0_1.15-1_arm64.deb ... 164s Unpacking libxcb-glx0:arm64 (1.15-1) ... 164s Selecting previously unselected package libxcb-present0:arm64. 164s Preparing to unpack .../060-libxcb-present0_1.15-1_arm64.deb ... 164s Unpacking libxcb-present0:arm64 (1.15-1) ... 164s Selecting previously unselected package libxcb-randr0:arm64. 164s Preparing to unpack .../061-libxcb-randr0_1.15-1_arm64.deb ... 164s Unpacking libxcb-randr0:arm64 (1.15-1) ... 164s Selecting previously unselected package libxcb-sync1:arm64. 164s Preparing to unpack .../062-libxcb-sync1_1.15-1_arm64.deb ... 164s Unpacking libxcb-sync1:arm64 (1.15-1) ... 164s Selecting previously unselected package libxcb-xfixes0:arm64. 164s Preparing to unpack .../063-libxcb-xfixes0_1.15-1_arm64.deb ... 164s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 164s Selecting previously unselected package libxfixes3:arm64. 164s Preparing to unpack .../064-libxfixes3_1%3a6.0.0-2_arm64.deb ... 164s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 164s Selecting previously unselected package libxshmfence1:arm64. 164s Preparing to unpack .../065-libxshmfence1_1.3-1build4_arm64.deb ... 164s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 164s Selecting previously unselected package libxxf86vm1:arm64. 164s Preparing to unpack .../066-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 164s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 164s Selecting previously unselected package libglx-mesa0:arm64. 164s Preparing to unpack .../067-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 164s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 164s Selecting previously unselected package libglx0:arm64. 164s Preparing to unpack .../068-libglx0_1.7.0-1_arm64.deb ... 164s Unpacking libglx0:arm64 (1.7.0-1) ... 164s Selecting previously unselected package libgl1:arm64. 164s Preparing to unpack .../069-libgl1_1.7.0-1_arm64.deb ... 164s Unpacking libgl1:arm64 (1.7.0-1) ... 165s Selecting previously unselected package libgl2ps1.4. 165s Preparing to unpack .../070-libgl2ps1.4_1.4.2+dfsg1-2_arm64.deb ... 165s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 165s Selecting previously unselected package libglew2.2:arm64. 165s Preparing to unpack .../071-libglew2.2_2.2.0-4_arm64.deb ... 165s Unpacking libglew2.2:arm64 (2.2.0-4) ... 165s Selecting previously unselected package libsz2:arm64. 165s Preparing to unpack .../072-libsz2_1.1.2-1_arm64.deb ... 165s Unpacking libsz2:arm64 (1.1.2-1) ... 165s Selecting previously unselected package libhdf5-103-1t64:arm64. 165s Preparing to unpack .../073-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 165s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 165s Selecting previously unselected package libhdf5-hl-100t64:arm64. 165s Preparing to unpack .../074-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 165s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 165s Selecting previously unselected package libhwloc15:arm64. 165s Preparing to unpack .../075-libhwloc15_2.10.0-1_arm64.deb ... 165s Unpacking libhwloc15:arm64 (2.10.0-1) ... 165s Selecting previously unselected package libjpeg-turbo8:arm64. 165s Preparing to unpack .../076-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 165s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 165s Selecting previously unselected package libjpeg8:arm64. 165s Preparing to unpack .../077-libjpeg8_8c-2ubuntu11_arm64.deb ... 165s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 165s Selecting previously unselected package libjsoncpp25:arm64. 165s Preparing to unpack .../078-libjsoncpp25_1.9.5-6_arm64.deb ... 165s Unpacking libjsoncpp25:arm64 (1.9.5-6) ... 165s Selecting previously unselected package libkim-api2:arm64. 165s Preparing to unpack .../079-libkim-api2_2.3.0-1_arm64.deb ... 165s Unpacking libkim-api2:arm64 (2.3.0-1) ... 165s Selecting previously unselected package liblapack3:arm64. 165s Preparing to unpack .../080-liblapack3_3.12.0-3_arm64.deb ... 165s Unpacking liblapack3:arm64 (3.12.0-3) ... 165s Selecting previously unselected package libnetcdf19t64:arm64. 165s Preparing to unpack .../081-libnetcdf19t64_1%3a4.9.2-5ubuntu3_arm64.deb ... 165s Unpacking libnetcdf19t64:arm64 (1:4.9.2-5ubuntu3) ... 165s Selecting previously unselected package libmunge2:arm64. 165s Preparing to unpack .../082-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 165s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 165s Selecting previously unselected package libpciaccess0:arm64. 165s Preparing to unpack .../083-libpciaccess0_0.17-3_arm64.deb ... 165s Unpacking libpciaccess0:arm64 (0.17-3) ... 165s Selecting previously unselected package libxnvctrl0:arm64. 165s Preparing to unpack .../084-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 165s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 165s Selecting previously unselected package ocl-icd-libopencl1:arm64. 165s Preparing to unpack .../085-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 165s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 165s Selecting previously unselected package libhwloc-plugins:arm64. 165s Preparing to unpack .../086-libhwloc-plugins_2.10.0-1_arm64.deb ... 165s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 165s Selecting previously unselected package libpmix2t64:arm64. 165s Preparing to unpack .../087-libpmix2t64_5.0.1-4.1_arm64.deb ... 165s Unpacking libpmix2t64:arm64 (5.0.1-4.1) ... 165s Selecting previously unselected package libucx0:arm64. 165s Preparing to unpack .../088-libucx0_1.16.0+ds-4_arm64.deb ... 165s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 165s Selecting previously unselected package libopenmpi3t64:arm64. 165s Preparing to unpack .../089-libopenmpi3t64_4.1.6-6ubuntu1_arm64.deb ... 165s Unpacking libopenmpi3t64:arm64 (4.1.6-6ubuntu1) ... 165s Selecting previously unselected package libpnetcdf0d:arm64. 165s Preparing to unpack .../090-libpnetcdf0d_1.12.3-2_arm64.deb ... 165s Unpacking libpnetcdf0d:arm64 (1.12.3-2) ... 165s Selecting previously unselected package libpython3.12t64:arm64. 165s Preparing to unpack .../091-libpython3.12t64_3.12.2-4build2_arm64.deb ... 165s Unpacking libpython3.12t64:arm64 (3.12.2-4build2) ... 166s Selecting previously unselected package libvoro++1. 166s Preparing to unpack .../092-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 166s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 166s Selecting previously unselected package libogg0:arm64. 166s Preparing to unpack .../093-libogg0_1.3.5-3_arm64.deb ... 166s Unpacking libogg0:arm64 (1.3.5-3) ... 166s Selecting previously unselected package libopengl0:arm64. 166s Preparing to unpack .../094-libopengl0_1.7.0-1_arm64.deb ... 166s Unpacking libopengl0:arm64 (1.7.0-1) ... 166s Selecting previously unselected package proj-data. 166s Preparing to unpack .../095-proj-data_9.3.1-1_all.deb ... 166s Unpacking proj-data (9.3.1-1) ... 166s Selecting previously unselected package libjbig0:arm64. 166s Preparing to unpack .../096-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 166s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 166s Selecting previously unselected package liblerc4:arm64. 166s Preparing to unpack .../097-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 166s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 166s Selecting previously unselected package libsharpyuv0:arm64. 166s Preparing to unpack .../098-libsharpyuv0_1.3.2-0.4_arm64.deb ... 166s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 166s Selecting previously unselected package libwebp7:arm64. 166s Preparing to unpack .../099-libwebp7_1.3.2-0.4_arm64.deb ... 166s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 166s Selecting previously unselected package libtiff6:arm64. 166s Preparing to unpack .../100-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 166s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 166s Selecting previously unselected package libproj25:arm64. 166s Preparing to unpack .../101-libproj25_9.3.1-1_arm64.deb ... 166s Unpacking libproj25:arm64 (9.3.1-1) ... 166s Selecting previously unselected package libtbbmalloc2:arm64. 166s Preparing to unpack .../102-libtbbmalloc2_2021.11.0-2ubuntu2_arm64.deb ... 166s Unpacking libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ... 166s Selecting previously unselected package libtbbbind-2-5:arm64. 166s Preparing to unpack .../103-libtbbbind-2-5_2021.11.0-2ubuntu2_arm64.deb ... 166s Unpacking libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 166s Selecting previously unselected package libtbb12:arm64. 166s Preparing to unpack .../104-libtbb12_2021.11.0-2ubuntu2_arm64.deb ... 166s Unpacking libtbb12:arm64 (2021.11.0-2ubuntu2) ... 166s Selecting previously unselected package libtcl8.6:arm64. 166s Preparing to unpack .../105-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 166s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 166s Selecting previously unselected package libtheora0:arm64. 166s Preparing to unpack .../106-libtheora0_1.1.1+dfsg.1-16.1_arm64.deb ... 166s Unpacking libtheora0:arm64 (1.1.1+dfsg.1-16.1) ... 166s Selecting previously unselected package libxft2:arm64. 166s Preparing to unpack .../107-libxft2_2.3.6-1_arm64.deb ... 166s Unpacking libxft2:arm64 (2.3.6-1) ... 166s Selecting previously unselected package x11-common. 166s 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libxcb-sync1:arm64 (1.15-1) ... 169s Setting up fonts-dejavu-mono (2.37-8) ... 169s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 169s Setting up libhwloc15:arm64 (2.10.0-1) ... 169s Setting up libmpc3:arm64 (1.3.1-1) ... 169s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 169s Setting up libjsoncpp25:arm64 (1.9.5-6) ... 169s Setting up fonts-dejavu-core (2.37-8) ... 169s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 169s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 169s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 169s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 169s Setting up libwebp7:arm64 (1.3.2-0.4) ... 169s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 169s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 169s Setting up libhogweed6t64:arm64 (3.9.1-2.2) ... 169s Setting up libnsl-dev:arm64 (1.3.0-3) ... 169s Setting up 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(2.1.12-stable-9) ... 169s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 169s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 169s Setting up libgnutls30t64:arm64 (3.8.3-1.1ubuntu2) ... 169s Setting up libfabric1:arm64 (1.17.0-3) ... 169s Setting up python3.12-minimal (3.12.2-4build2) ... 170s Setting up liblapack3:arm64 (3.12.0-3) ... 170s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 170s Setting up cpp-12 (12.3.0-15ubuntu1) ... 170s Setting up libpython3.12-stdlib:arm64 (3.12.2-4build2) ... 170s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 170s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 170s Setting up python3.12 (3.12.2-4build2) ... 171s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 171s Setting up libcurl3t64-gnutls:arm64 (8.5.0-2ubuntu7) ... 171s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 171s Setting up libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 171s Setting up libpython3.12t64:arm64 (3.12.2-4build2) ... 171s Setting up libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 171s Setting up libpmix2t64:arm64 (5.0.1-4.1) ... 171s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 171s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 171s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 171s Setting up curl (8.5.0-2ubuntu7) ... 171s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 171s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 171s Setting up libhsakmt1:arm64 (5.7.0-1) ... 171s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 171s Setting up libnetcdf19t64:arm64 (1:4.9.2-5ubuntu3) ... 171s Setting up libxft2:arm64 (2.3.6-1) ... 171s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 171s Setting up libglx0:arm64 (1.7.0-1) ... 171s Setting up libproj25:arm64 (9.3.1-1) ... 171s Setting up libtk8.6:arm64 (8.6.13-2) ... 171s Setting up libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 171s Setting up libtbb12:arm64 (2021.11.0-2ubuntu2) ... 171s Setting up libcairo2:arm64 (1.18.0-1) ... 171s Setting up libgl1:arm64 (1.7.0-1) ... 171s Setting up gcc-12 (12.3.0-15ubuntu1) ... 171s Setting up libglew2.2:arm64 (2.2.0-4) ... 171s Setting up libhsa-runtime64-1 (5.7.1-1) ... 171s Setting up libtheora0:arm64 (1.1.1+dfsg.1-16.1) ... 171s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 171s Setting up gfortran-12 (12.3.0-15ubuntu1) ... 171s Setting up libamdhip64-5 (5.2.3-12) ... 171s Setting up libucx0:arm64 (1.16.0+ds-4) ... 171s Setting up libkim-api2:arm64 (2.3.0-1) ... 171s Setting up libopenmpi3t64:arm64 (4.1.6-6ubuntu1) ... 171s Setting up libpnetcdf0d:arm64 (1.12.3-2) ... 171s Setting up libvtk9.1t64:arm64 (9.1.0+really9.1.0+dfsg2-7.1build2) ... 171s Setting up openmpi-bin (4.1.6-6ubuntu1) ... 171s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 171s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 171s Setting up mpi-default-bin (1.15) ... 171s Setting up liblammps0t64:arm64 (20240207+dfsg-1.1build2) ... 171s Setting up lammps (20240207+dfsg-1.1build2) ... 171s Setting up autopkgtest-satdep (0) ... 171s Processing triggers for systemd (255.2-3ubuntu2) ... 171s Processing triggers for man-db (2.12.0-3) ... 172s Processing triggers for libc-bin (2.39-0ubuntu2) ... 179s (Reading database ... 78954 files and directories currently installed.) 179s Removing autopkgtest-satdep (0) ... 179s autopkgtest [14:54:43]: test crack: [----------------------- 181s LAMMPS (7 Feb 2024 - Update 1) 181s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 181s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 181s using 1 OpenMP thread(s) per MPI task 181s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 181s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 181s 2 by 1 by 1 MPI processor grid 181s Created 8141 atoms 181s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 181s create_atoms CPU = 0.002 seconds 181s 302 atoms in group lower 181s 302 atoms in group upper 181s 604 atoms in group boundary 181s 7537 atoms in group mobile 181s 841 atoms in group leftupper 181s 841 atoms in group leftlower 181s Setting atom values ... 181s 841 settings made for type 181s Setting atom values ... 181s 841 settings made for type 181s Setting atom values ... 181s 302 settings made for type 181s Setting atom values ... 181s 302 settings made for type 181s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 181s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 181s Neighbor list info ... 181s update: every = 1 steps, delay = 5 steps, check = yes 181s max neighbors/atom: 2000, page size: 100000 181s master list distance cutoff = 2.8 181s ghost atom cutoff = 2.8 181s binsize = 1.4, bins = 80 56 1 181s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 181s (1) pair lj/cut, perpetual 181s attributes: half, newton on 181s pair build: half/bin/atomonly/newton 181s stencil: half/bin/2d 181s bin: standard 181s Setting up Verlet run ... 181s Unit style : lj 181s Current step : 0 181s Time step : 0.003 181s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 181s Step Temp E_pair E_mol TotEng Press Volume 181s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 181s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 181s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 181s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 181s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 181s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 181s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 182s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 182s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 182s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 182s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 182s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 182s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 183s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 183s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 183s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 183s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 183s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 183s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 183s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 183s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 183s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 184s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 184s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 184s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 184s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 184s Loop time of 3.1649 on 2 procs for 5000 steps with 8141 atoms 184s 184s Performance: 409491.237 tau/day, 1579.827 timesteps/s, 12.861 Matom-step/s 184s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 184s 184s MPI task timing breakdown: 184s Section | min time | avg time | max time |%varavg| %total 184s --------------------------------------------------------------- 184s Pair | 2.1415 | 2.1982 | 2.2549 | 3.8 | 69.46 184s Neigh | 0.1101 | 0.14109 | 0.17207 | 8.2 | 4.46 184s Comm | 0.3922 | 0.41831 | 0.44442 | 4.0 | 13.22 184s Output | 0.0060209 | 0.0066823 | 0.0073438 | 0.8 | 0.21 184s Modify | 0.23045 | 0.23531 | 0.24017 | 1.0 | 7.43 184s Other | | 0.1653 | | | 5.22 184s 184s Nlocal: 4070.5 ave 4085 max 4056 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s Nghost: 207 ave 208 max 206 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s Neighs: 35700 ave 35927 max 35473 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s 184s Total # of neighbors = 71400 184s Ave neighs/atom = 8.7704213 184s Neighbor list builds = 106 184s Dangerous builds = 0 184s Total wall time: 0:00:03 186s LAMMPS (7 Feb 2024 - Update 1) 191s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 191s using 1 OpenMP thread(s) per MPI task 191s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 191s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 191s 1 by 1 by 1 MPI processor grid 191s Created 8141 atoms 191s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 191s create_atoms CPU = 0.002 seconds 191s 302 atoms in group lower 191s 302 atoms in group upper 191s 604 atoms in group boundary 191s 7537 atoms in group mobile 191s 841 atoms in group leftupper 191s 841 atoms in group leftlower 191s Setting atom values ... 191s 841 settings made for type 191s Setting atom values ... 191s 841 settings made for type 191s Setting atom values ... 191s 302 settings made for type 191s Setting atom values ... 191s 302 settings made for type 191s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 191s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 191s Neighbor list info ... 191s update: every = 1 steps, delay = 5 steps, check = yes 191s max neighbors/atom: 2000, page size: 100000 191s master list distance cutoff = 2.8 191s ghost atom cutoff = 2.8 191s binsize = 1.4, bins = 80 56 1 191s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 191s (1) pair lj/cut, perpetual 191s attributes: half, newton on 191s pair build: half/bin/atomonly/newton 191s stencil: half/bin/2d 191s bin: standard 191s Setting up Verlet run ... 191s Unit style : lj 191s Current step : 0 191s Time step : 0.003 191s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 191s Step Temp E_pair E_mol TotEng Press Volume 191s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 191s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 191s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 191s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 191s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 191s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 191s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 191s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 191s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 191s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 191s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 191s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 191s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 191s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 191s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 191s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 191s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 191s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 191s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 191s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 191s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 191s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 191s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 192s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 192s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 192s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 192s Loop time of 5.28319 on 1 procs for 5000 steps with 8141 atoms 192s 192s Performance: 245306.414 tau/day, 946.398 timesteps/s, 7.705 Matom-step/s 192s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 192s 192s MPI task timing breakdown: 192s Section | min time | avg time | max time |%varavg| %total 192s --------------------------------------------------------------- 192s Pair | 4.3867 | 4.3867 | 4.3867 | 0.0 | 83.03 192s Neigh | 0.19551 | 0.19551 | 0.19551 | 0.0 | 3.70 192s Comm | 0.022977 | 0.022977 | 0.022977 | 0.0 | 0.43 192s Output | 0.010156 | 0.010156 | 0.010156 | 0.0 | 0.19 192s Modify | 0.4474 | 0.4474 | 0.4474 | 0.0 | 8.47 192s Other | | 0.2205 | | | 4.17 192s 192s Nlocal: 8141 ave 8141 max 8141 min 192s Histogram: 1 0 0 0 0 0 0 0 0 0 192s Nghost: 0 ave 0 max 0 min 192s Histogram: 1 0 0 0 0 0 0 0 0 0 192s Neighs: 71389 ave 71389 max 71389 min 192s Histogram: 1 0 0 0 0 0 0 0 0 0 192s 192s Total # of neighbors = 71389 192s Ave neighs/atom = 8.7690701 192s Neighbor list builds = 100 192s Dangerous builds = 0 192s Total wall time: 0:00:05 192s run: OK 192s autopkgtest [14:54:56]: test crack: -----------------------] 193s autopkgtest [14:54:57]: test crack: - - - - - - - - - - results - - - - - - - - - - 193s crack PASS 193s autopkgtest [14:54:57]: test dipole: preparing testbed 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 196s Starting pkgProblemResolver with broken count: 0 196s Starting 2 pkgProblemResolver with broken count: 0 196s Done 196s The following NEW packages will be installed: 196s autopkgtest-satdep 196s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 196s Need to get 0 B/708 B of archives. 196s After this operation, 0 B of additional disk space will be used. 196s Get:1 /tmp/autopkgtest.jXH7B5/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 197s Selecting previously unselected package autopkgtest-satdep. 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78954 files and directories currently installed.) 197s Preparing to unpack .../2-autopkgtest-satdep.deb ... 197s Unpacking autopkgtest-satdep (0) ... 197s Setting up autopkgtest-satdep (0) ... 200s (Reading database ... 78954 files and directories currently installed.) 200s Removing autopkgtest-satdep (0) ... 200s autopkgtest [14:55:04]: test dipole: [----------------------- 201s LAMMPS (7 Feb 2024 - Update 1) 201s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 201s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 201s using 1 OpenMP thread(s) per MPI task 201s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 201s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 201s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 201s 2 by 1 by 1 MPI processor grid 201s Created 200 atoms 201s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 201s create_atoms CPU = 0.001 seconds 201s Setting atom values ... 201s 200 settings made for mass 201s Setting atom values ... 201s 200 settings made for dipole/random 201s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 201s Neighbor list info ... 201s update: every = 1 steps, delay = 0 steps, check = yes 201s max neighbors/atom: 2000, page size: 100000 201s master list distance cutoff = 2.8 201s ghost atom cutoff = 2.8 201s binsize = 1.4, bins = 13 13 2 201s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 201s (1) pair lj/cut/dipole/cut, perpetual 201s attributes: half, newton on 201s pair build: half/bin/atomonly/newton 201s stencil: half/bin/2d 201s bin: standard 201s Setting up Verlet run ... 201s Unit style : lj 201s Current step : 0 201s Time step : 0.005 201s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 201s Step Temp E_pair c_erot TotEng Press 201s 0 0 -2.0965715 0 -2.0965715 -2.4759659 201s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 201s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 201s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 201s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 201s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 201s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 201s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 201s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 201s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 201s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 201s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 201s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 201s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 201s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 201s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 201s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 201s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 201s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 201s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 201s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 201s Loop time of 0.467055 on 2 procs for 10000 steps with 200 atoms 201s 201s Performance: 9249449.660 tau/day, 21410.763 timesteps/s, 4.282 Matom-step/s 201s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 201s 201s MPI task timing breakdown: 201s Section | min time | avg time | max time |%varavg| %total 201s --------------------------------------------------------------- 201s Pair | 0.24364 | 0.27445 | 0.30525 | 5.9 | 58.76 201s Neigh | 0.014304 | 0.015635 | 0.016966 | 1.1 | 3.35 201s Comm | 0.1027 | 0.13323 | 0.16376 | 8.4 | 28.53 201s Output | 0.00034554 | 0.0006866 | 0.0010277 | 0.0 | 0.15 201s Modify | 0.023461 | 0.025522 | 0.027583 | 1.3 | 5.46 201s Other | | 0.01753 | | | 3.75 201s 201s Nlocal: 100 ave 104 max 96 min 201s Histogram: 1 0 0 0 0 0 0 0 0 1 201s Nghost: 123.5 ave 124 max 123 min 201s Histogram: 1 0 0 0 0 0 0 0 0 1 201s Neighs: 820 ave 885 max 755 min 201s Histogram: 1 0 0 0 0 0 0 0 0 1 201s 201s Total # of neighbors = 1640 201s Ave neighs/atom = 8.2 201s Neighbor list builds = 697 201s Dangerous builds = 0 201s Total wall time: 0:00:00 201s LAMMPS (7 Feb 2024 - Update 1) 202s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 202s using 1 OpenMP thread(s) per MPI task 202s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 202s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 202s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 202s 1 by 1 by 1 MPI processor grid 202s Created 200 atoms 202s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 202s create_atoms CPU = 0.001 seconds 202s Setting atom values ... 202s 200 settings made for mass 202s Setting atom values ... 202s 200 settings made for dipole/random 202s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 202s Neighbor list info ... 202s update: every = 1 steps, delay = 0 steps, check = yes 202s max neighbors/atom: 2000, page size: 100000 202s master list distance cutoff = 2.8 202s ghost atom cutoff = 2.8 202s binsize = 1.4, bins = 13 13 2 202s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 202s (1) pair lj/cut/dipole/cut, perpetual 202s attributes: half, newton on 202s pair build: half/bin/atomonly/newton 202s stencil: half/bin/2d 202s bin: standard 202s Setting up Verlet run ... 202s Unit style : lj 202s Current step : 0 202s Time step : 0.005 202s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 202s Step Temp E_pair c_erot TotEng Press 202s 0 0 -2.0965715 0 -2.0965715 -2.4759659 202s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 202s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 202s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 202s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 202s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 202s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 202s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 202s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 202s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 202s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 202s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 202s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 202s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 202s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 202s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 202s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 202s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 202s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 202s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 202s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 202s Loop time of 0.671321 on 1 procs for 10000 steps with 200 atoms 202s 202s Performance: 6435074.445 tau/day, 14896.006 timesteps/s, 2.979 Matom-step/s 202s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 202s 202s MPI task timing breakdown: 202s Section | min time | avg time | max time |%varavg| %total 202s --------------------------------------------------------------- 202s Pair | 0.54307 | 0.54307 | 0.54307 | 0.0 | 80.90 202s Neigh | 0.030291 | 0.030291 | 0.030291 | 0.0 | 4.51 202s Comm | 0.037261 | 0.037261 | 0.037261 | 0.0 | 5.55 202s Output | 0.00024812 | 0.00024812 | 0.00024812 | 0.0 | 0.04 202s Modify | 0.048978 | 0.048978 | 0.048978 | 0.0 | 7.30 202s Other | | 0.01148 | | | 1.71 202s 202s Nlocal: 200 ave 200 max 200 min 202s Histogram: 1 0 0 0 0 0 0 0 0 0 202s Nghost: 155 ave 155 max 155 min 202s Histogram: 1 0 0 0 0 0 0 0 0 0 202s Neighs: 1664 ave 1664 max 1664 min 202s Histogram: 1 0 0 0 0 0 0 0 0 0 202s 202s Total # of neighbors = 1664 202s Ave neighs/atom = 8.32 202s Neighbor list builds = 697 202s Dangerous builds = 0 202s Total wall time: 0:00:00 202s run: OK 203s autopkgtest [14:55:07]: test dipole: -----------------------] 203s dipole PASS 203s autopkgtest [14:55:07]: test dipole: - - - - - - - - - - results - - - - - - - - - - 203s autopkgtest [14:55:07]: test ellipse: preparing testbed 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 206s Starting pkgProblemResolver with broken count: 0 206s Starting 2 pkgProblemResolver with broken count: 0 206s Done 206s The following NEW packages will be installed: 206s autopkgtest-satdep 206s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 206s Need to get 0 B/704 B of archives. 206s After this operation, 0 B of additional disk space will be used. 206s Get:1 /tmp/autopkgtest.jXH7B5/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 207s Selecting previously unselected package autopkgtest-satdep. 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78954 files and directories currently installed.) 207s Preparing to unpack .../3-autopkgtest-satdep.deb ... 207s Unpacking autopkgtest-satdep (0) ... 207s Setting up autopkgtest-satdep (0) ... 209s (Reading database ... 78954 files and directories currently installed.) 209s Removing autopkgtest-satdep (0) ... 210s autopkgtest [14:55:14]: test ellipse: [----------------------- 211s LAMMPS (7 Feb 2024 - Update 1) 211s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 211s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 211s using 1 OpenMP thread(s) per MPI task 211s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 211s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 211s 2 by 1 by 1 MPI processor grid 211s Created 400 atoms 211s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 211s create_atoms CPU = 0.001 seconds 211s Setting atom values ... 211s 29 settings made for type/fraction 211s Setting atom values ... 211s 371 settings made for mass 211s Setting atom values ... 211s 29 settings made for mass 211s Setting atom values ... 211s 371 settings made for shape 211s Setting atom values ... 211s 29 settings made for shape 211s Setting atom values ... 211s 400 settings made for quat/random 211s 371 atoms in group spheroid 211s 211s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 211s 211s Your simulation uses code contributions which should be cited: 211s - pair gayberne command: doi:10.1063/1.3058435 211s The log file lists these citations in BibTeX format. 211s 211s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 211s 211s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 211s Neighbor list info ... 211s update: every = 1 steps, delay = 0 steps, check = yes 211s max neighbors/atom: 2000, page size: 100000 211s master list distance cutoff = 4.8 211s ghost atom cutoff = 4.8 211s binsize = 2.4, bins = 59 59 3 211s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 211s (1) pair gayberne, perpetual 211s attributes: half, newton on 211s pair build: half/bin/atomonly/newton 211s stencil: half/bin/2d 211s bin: standard 211s Setting up Verlet run ... 211s Unit style : lj 211s Current step : 0 211s Time step : 0.002 211s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 211s Step c_rot E_pair TotEng Press Volume 211s 0 2.3158404 0 2.394 0.04788 20000 211s 100 1.7101139 0 1.7678302 0.034413192 20548.286 211s 200 2.3115592 0 2.3895743 0.04649702 20556.796 211s 300 1.831333 0 1.8931405 0.041256922 18354.646 211s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 211s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 211s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 211s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 211s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 211s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 211s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 211s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 211s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 211s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 212s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 212s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 212s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 212s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 212s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 212s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 212s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 212s Loop time of 0.346437 on 2 procs for 2000 steps with 400 atoms 212s 212s Performance: 997584.967 tau/day, 5773.061 timesteps/s, 2.309 Matom-step/s 212s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 212s 212s MPI task timing breakdown: 212s Section | min time | avg time | max time |%varavg| %total 212s --------------------------------------------------------------- 212s Pair | 0.16686 | 0.18569 | 0.20451 | 4.4 | 53.60 212s Neigh | 0.010243 | 0.010535 | 0.010827 | 0.3 | 3.04 212s Comm | 0.032871 | 0.051291 | 0.069712 | 8.1 | 14.81 212s Output | 0.015361 | 0.01549 | 0.015619 | 0.1 | 4.47 212s Modify | 0.075413 | 0.076193 | 0.076972 | 0.3 | 21.99 212s Other | | 0.007239 | | | 2.09 212s 212s Nlocal: 200 ave 211 max 189 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Nghost: 215 ave 217 max 213 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Neighs: 1561 ave 1651 max 1471 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s 212s Total # of neighbors = 3122 212s Ave neighs/atom = 7.805 212s Neighbor list builds = 346 212s Dangerous builds = 0 212s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 212s Setting up Verlet run ... 212s Unit style : lj 212s Current step : 2000 212s Time step : 0.002 212s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 212s Step c_rot E_pair TotEng Press Volume 212s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 212s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 212s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 212s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 212s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 212s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 212s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 212s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 212s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 212s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 212s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 212s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 212s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 212s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 212s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 212s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 212s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 212s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 212s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 212s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 212s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 212s Loop time of 0.364575 on 2 procs for 2000 steps with 400 atoms 212s 212s Performance: 947954.166 tau/day, 5485.846 timesteps/s, 2.194 Matom-step/s 212s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 212s 212s MPI task timing breakdown: 212s Section | min time | avg time | max time |%varavg| %total 212s --------------------------------------------------------------- 212s Pair | 0.23777 | 0.24056 | 0.24335 | 0.6 | 65.98 212s Neigh | 0.0025717 | 0.0030023 | 0.003433 | 0.8 | 0.82 212s Comm | 0.043172 | 0.043698 | 0.044224 | 0.3 | 11.99 212s Output | 0.015844 | 0.015972 | 0.016099 | 0.1 | 4.38 212s Modify | 0.037093 | 0.044833 | 0.052574 | 3.7 | 12.30 212s Other | | 0.01651 | | | 4.53 212s 212s Nlocal: 200 ave 227 max 173 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Nghost: 211 ave 219 max 203 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Neighs: 1650.5 ave 1950 max 1351 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s 212s Total # of neighbors = 3301 212s Ave neighs/atom = 8.2525 212s Neighbor list builds = 49 212s Dangerous builds = 0 212s Total wall time: 0:00:00 212s LAMMPS (7 Feb 2024 - Update 1) 213s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 213s using 1 OpenMP thread(s) per MPI task 213s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 213s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 213s 1 by 1 by 1 MPI processor grid 213s Created 400 atoms 213s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 213s create_atoms CPU = 0.000 seconds 213s Setting atom values ... 213s 29 settings made for type/fraction 213s Setting atom values ... 213s 371 settings made for mass 213s Setting atom values ... 213s 29 settings made for mass 213s Setting atom values ... 213s 371 settings made for shape 213s Setting atom values ... 213s 29 settings made for shape 213s Setting atom values ... 213s 400 settings made for quat/random 213s 371 atoms in group spheroid 213s 213s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 213s 213s Your simulation uses code contributions which should be cited: 213s - pair gayberne command: doi:10.1063/1.3058435 213s The log file lists these citations in BibTeX format. 213s 213s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 213s 213s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 213s Neighbor list info ... 213s update: every = 1 steps, delay = 0 steps, check = yes 213s max neighbors/atom: 2000, page size: 100000 213s master list distance cutoff = 4.8 213s ghost atom cutoff = 4.8 213s binsize = 2.4, bins = 59 59 3 213s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 213s (1) pair gayberne, perpetual 213s attributes: half, newton on 213s pair build: half/bin/atomonly/newton 213s stencil: half/bin/2d 213s bin: standard 213s Setting up Verlet run ... 213s Unit style : lj 213s Current step : 0 213s Time step : 0.002 213s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 213s Step c_rot E_pair TotEng Press Volume 213s 0 2.3158404 0 2.394 0.04788 20000 213s 100 1.7101139 0 1.7678302 0.034413192 20548.286 213s 200 2.3115592 0 2.3895743 0.04649702 20556.796 213s 300 1.831333 0 1.8931405 0.041256922 18354.646 213s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 213s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 213s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 213s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 213s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 213s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 213s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 213s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 213s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 213s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 213s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 213s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 213s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 213s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 213s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 213s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 213s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 213s Loop time of 0.558752 on 1 procs for 2000 steps with 400 atoms 213s 213s Performance: 618521.145 tau/day, 3579.405 timesteps/s, 1.432 Matom-step/s 213s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 213s 213s MPI task timing breakdown: 213s Section | min time | avg time | max time |%varavg| %total 213s --------------------------------------------------------------- 213s Pair | 0.37434 | 0.37434 | 0.37434 | 0.0 | 67.00 214s Neigh | 0.019973 | 0.019973 | 0.019973 | 0.0 | 3.57 214s Comm | 0.010762 | 0.010762 | 0.010762 | 0.0 | 1.93 214s Output | 0.01988 | 0.01988 | 0.01988 | 0.0 | 3.56 214s Modify | 0.12912 | 0.12912 | 0.12912 | 0.0 | 23.11 214s Other | | 0.004674 | | | 0.84 214s 214s Nlocal: 400 ave 400 max 400 min 214s Histogram: 1 0 0 0 0 0 0 0 0 0 214s Nghost: 276 ave 276 max 276 min 214s Histogram: 1 0 0 0 0 0 0 0 0 0 214s Neighs: 3122 ave 3122 max 3122 min 214s Histogram: 1 0 0 0 0 0 0 0 0 0 214s 214s Total # of neighbors = 3122 214s Ave neighs/atom = 7.805 214s Neighbor list builds = 346 214s Dangerous builds = 0 214s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 214s Setting up Verlet run ... 214s Unit style : lj 214s Current step : 2000 214s Time step : 0.002 214s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 214s Step c_rot E_pair TotEng Press Volume 214s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 214s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 214s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 214s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 214s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 214s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 214s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 214s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 214s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 214s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 214s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 214s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 214s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 214s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 214s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 214s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 214s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 214s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 214s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 214s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 214s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 214s Loop time of 0.60326 on 1 procs for 2000 steps with 400 atoms 214s 214s Performance: 572887.782 tau/day, 3315.323 timesteps/s, 1.326 Matom-step/s 214s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 214s 214s MPI task timing breakdown: 214s Section | min time | avg time | max time |%varavg| %total 214s --------------------------------------------------------------- 214s Pair | 0.48159 | 0.48159 | 0.48159 | 0.0 | 79.83 214s Neigh | 0.0058319 | 0.0058319 | 0.0058319 | 0.0 | 0.97 214s Comm | 0.012269 | 0.012269 | 0.012269 | 0.0 | 2.03 214s Output | 0.019376 | 0.019376 | 0.019376 | 0.0 | 3.21 214s Modify | 0.080387 | 0.080387 | 0.080387 | 0.0 | 13.33 214s Other | | 0.003802 | | | 0.63 214s 214s Nlocal: 400 ave 400 max 400 min 214s Histogram: 1 0 0 0 0 0 0 0 0 0 214s Nghost: 284 ave 284 max 284 min 214s Histogram: 1 0 0 0 0 0 0 0 0 0 214s Neighs: 3287 ave 3287 max 3287 min 214s Histogram: 1 0 0 0 0 0 0 0 0 0 214s 214s Total # of neighbors = 3287 214s Ave neighs/atom = 8.2175 214s Neighbor list builds = 51 214s Dangerous builds = 0 214s Total wall time: 0:00:01 214s LAMMPS (7 Feb 2024 - Update 1) 214s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 214s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 214s using 1 OpenMP thread(s) per MPI task 214s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 214s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 214s 2 by 1 by 1 MPI processor grid 214s Created 400 atoms 214s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 214s create_atoms CPU = 0.000 seconds 214s Setting atom values ... 214s 29 settings made for type/fraction 214s Setting atom values ... 214s 371 settings made for mass 214s Setting atom values ... 214s 29 settings made for mass 214s Setting atom values ... 214s 371 settings made for shape 214s Setting atom values ... 214s 29 settings made for shape 214s Setting atom values ... 214s 400 settings made for quat/random 214s 371 atoms in group spheroid 214s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 214s Neighbor list info ... 214s update: every = 1 steps, delay = 0 steps, check = yes 214s max neighbors/atom: 2000, page size: 100000 214s master list distance cutoff = 4.8 214s ghost atom cutoff = 4.8 214s binsize = 2.4, bins = 59 59 3 214s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 214s (1) pair resquared, perpetual 214s attributes: half, newton on 214s pair build: half/bin/atomonly/newton 214s stencil: half/bin/2d 214s bin: standard 214s Setting up Verlet run ... 214s Unit style : lj 214s Current step : 0 214s Time step : 0.002 214s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 214s Step c_rot E_pair TotEng Press Volume 214s 0 2.3158404 0 2.394 0.04788 20000 214s 100 1.7101139 0 1.7678302 0.034413192 20548.286 214s 200 2.3115592 0 2.3895743 0.04649702 20556.796 214s 300 1.831333 0 1.8931405 0.041256922 18354.646 214s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 214s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 214s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 214s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 214s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 214s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 214s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 214s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 214s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 214s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 214s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 214s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 214s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 214s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 214s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 214s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 214s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 214s Loop time of 0.566122 on 2 procs for 2000 steps with 400 atoms 214s 214s Performance: 610468.756 tau/day, 3532.805 timesteps/s, 1.413 Matom-step/s 214s 98.6% CPU use with 2 MPI tasks x 1 OpenMP threads 214s 214s MPI task timing breakdown: 214s Section | min time | avg time | max time |%varavg| %total 214s --------------------------------------------------------------- 214s Pair | 0.41141 | 0.41558 | 0.41975 | 0.6 | 73.41 214s Neigh | 0.010725 | 0.011082 | 0.01144 | 0.3 | 1.96 214s Comm | 0.035755 | 0.039499 | 0.043242 | 1.9 | 6.98 214s Output | 0.015726 | 0.015866 | 0.016005 | 0.1 | 2.80 214s Modify | 0.074869 | 0.076142 | 0.077416 | 0.5 | 13.45 214s Other | | 0.007953 | | | 1.40 214s 214s Nlocal: 200 ave 210 max 190 min 214s Histogram: 1 0 0 0 0 0 0 0 0 1 214s Nghost: 164 ave 168 max 160 min 214s Histogram: 1 0 0 0 0 0 0 0 0 1 214s Neighs: 910 ave 958 max 862 min 214s Histogram: 1 0 0 0 0 0 0 0 0 1 214s 214s Total # of neighbors = 1820 214s Ave neighs/atom = 4.55 214s Neighbor list builds = 420 214s Dangerous builds = 0 214s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 214s Setting up Verlet run ... 214s Unit style : lj 214s Current step : 2000 214s Time step : 0.002 214s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 214s Step c_rot E_pair TotEng Press Volume 214s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 214s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 214s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 214s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 214s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 215s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 215s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 215s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 215s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 215s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 215s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 215s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 215s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 215s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 215s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 215s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 215s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 215s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 215s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 215s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 215s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 215s Loop time of 0.892289 on 2 procs for 2000 steps with 400 atoms 215s 215s Performance: 387318.512 tau/day, 2241.427 timesteps/s, 896.571 katom-step/s 215s 98.9% CPU use with 2 MPI tasks x 1 OpenMP threads 215s 215s MPI task timing breakdown: 215s Section | min time | avg time | max time |%varavg| %total 215s --------------------------------------------------------------- 215s Pair | 0.70126 | 0.7442 | 0.78714 | 5.0 | 83.40 215s Neigh | 0.0020954 | 0.0022674 | 0.0024395 | 0.4 | 0.25 215s Comm | 0.034344 | 0.077532 | 0.12072 | 15.5 | 8.69 215s Output | 0.01637 | 0.016509 | 0.016648 | 0.1 | 1.85 215s Modify | 0.03877 | 0.04441 | 0.050049 | 2.7 | 4.98 215s Other | | 0.007374 | | | 0.83 215s 215s Nlocal: 200 ave 212 max 188 min 215s Histogram: 1 0 0 0 0 0 0 0 0 1 215s Nghost: 171.5 ave 173 max 170 min 215s Histogram: 1 0 0 0 0 0 0 0 0 1 215s Neighs: 880.5 ave 946 max 815 min 215s Histogram: 1 0 0 0 0 0 0 0 0 1 215s 215s Total # of neighbors = 1761 215s Ave neighs/atom = 4.4025 215s Neighbor list builds = 49 215s Dangerous builds = 0 215s Total wall time: 0:00:01 216s LAMMPS (7 Feb 2024 - Update 1) 217s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 217s using 1 OpenMP thread(s) per MPI task 217s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 217s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 217s 1 by 1 by 1 MPI processor grid 217s Created 400 atoms 217s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 217s create_atoms CPU = 0.000 seconds 217s Setting atom values ... 217s 29 settings made for type/fraction 217s Setting atom values ... 217s 371 settings made for mass 217s Setting atom values ... 217s 29 settings made for mass 217s Setting atom values ... 217s 371 settings made for shape 217s Setting atom values ... 217s 29 settings made for shape 217s Setting atom values ... 217s 400 settings made for quat/random 217s 371 atoms in group spheroid 217s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 217s Neighbor list info ... 217s update: every = 1 steps, delay = 0 steps, check = yes 217s max neighbors/atom: 2000, page size: 100000 217s master list distance cutoff = 4.8 217s ghost atom cutoff = 4.8 217s binsize = 2.4, bins = 59 59 3 217s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 217s (1) pair resquared, perpetual 217s attributes: half, newton on 217s pair build: half/bin/atomonly/newton 217s stencil: half/bin/2d 217s bin: standard 217s Setting up Verlet run ... 217s Unit style : lj 217s Current step : 0 217s Time step : 0.002 217s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 217s Step c_rot E_pair TotEng Press Volume 217s 0 2.3158404 0 2.394 0.04788 20000 217s 100 1.7101139 0 1.7678302 0.034413192 20548.286 217s 200 2.3115592 0 2.3895743 0.04649702 20556.796 217s 300 1.831333 0 1.8931405 0.041256922 18354.646 217s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 217s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 217s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 217s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 217s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 217s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 217s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 217s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 217s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 217s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 217s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 217s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 217s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 217s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 217s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 217s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 217s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 217s Loop time of 1.01035 on 1 procs for 2000 steps with 400 atoms 217s 217s Performance: 342059.637 tau/day, 1979.512 timesteps/s, 791.805 katom-step/s 217s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 217s 217s MPI task timing breakdown: 217s Section | min time | avg time | max time |%varavg| %total 217s --------------------------------------------------------------- 217s Pair | 0.81919 | 0.81919 | 0.81919 | 0.0 | 81.08 217s Neigh | 0.020992 | 0.020992 | 0.020992 | 0.0 | 2.08 217s Comm | 0.0079474 | 0.0079474 | 0.0079474 | 0.0 | 0.79 217s Output | 0.024025 | 0.024025 | 0.024025 | 0.0 | 2.38 217s Modify | 0.13308 | 0.13308 | 0.13308 | 0.0 | 13.17 219s Other | | 0.00511 | | | 0.51 219s 219s Nlocal: 400 ave 400 max 400 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s Nghost: 206 ave 206 max 206 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s Neighs: 1820 ave 1820 max 1820 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s 219s Total # of neighbors = 1820 219s Ave neighs/atom = 4.55 219s Neighbor list builds = 420 219s Dangerous builds = 0 219s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 219s Setting up Verlet run ... 219s Unit style : lj 219s Current step : 2000 219s Time step : 0.002 219s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 219s Step c_rot E_pair TotEng Press Volume 219s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 219s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 219s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 219s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 219s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 219s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 219s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 219s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 219s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 219s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 219s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 219s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 219s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 219s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 219s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 219s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 219s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 219s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 219s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 219s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 219s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 219s Loop time of 1.59049 on 1 procs for 2000 steps with 400 atoms 219s 219s Performance: 217292.174 tau/day, 1257.478 timesteps/s, 502.991 katom-step/s 219s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 219s 219s MPI task timing breakdown: 219s Section | min time | avg time | max time |%varavg| %total 219s --------------------------------------------------------------- 219s Pair | 1.4722 | 1.4722 | 1.4722 | 0.0 | 92.56 219s Neigh | 0.004208 | 0.004208 | 0.004208 | 0.0 | 0.26 219s Comm | 0.0091915 | 0.0091915 | 0.0091915 | 0.0 | 0.58 219s Output | 0.019624 | 0.019624 | 0.019624 | 0.0 | 1.23 219s Modify | 0.081467 | 0.081467 | 0.081467 | 0.0 | 5.12 219s Other | | 0.003823 | | | 0.24 219s 219s Nlocal: 400 ave 400 max 400 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s Nghost: 215 ave 215 max 215 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s Neighs: 1761 ave 1761 max 1761 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s 219s Total # of neighbors = 1761 219s Ave neighs/atom = 4.4025 219s Neighbor list builds = 49 219s Dangerous builds = 0 219s Total wall time: 0:00:02 219s run: OK 219s autopkgtest [14:55:23]: test ellipse: -----------------------] 220s autopkgtest [14:55:24]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 220s ellipse PASS 220s autopkgtest [14:55:24]: test flow: preparing testbed 222s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Starting pkgProblemResolver with broken count: 0 222s Starting 2 pkgProblemResolver with broken count: 0 222s Done 223s The following NEW packages will be installed: 223s autopkgtest-satdep 223s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 223s Need to get 0 B/708 B of archives. 223s After this operation, 0 B of additional disk space will be used. 223s Get:1 /tmp/autopkgtest.jXH7B5/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 224s Selecting previously unselected package autopkgtest-satdep. 224s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78954 files and directories currently installed.) 224s Preparing to unpack .../4-autopkgtest-satdep.deb ... 224s Unpacking autopkgtest-satdep (0) ... 224s Setting up autopkgtest-satdep (0) ... 226s (Reading database ... 78954 files and directories currently installed.) 226s Removing autopkgtest-satdep (0) ... 227s autopkgtest [14:55:31]: test flow: [----------------------- 227s LAMMPS (7 Feb 2024 - Update 1) 227s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 227s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 227s using 1 OpenMP thread(s) per MPI task 227s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 227s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 227s 2 by 1 by 1 MPI processor grid 227s Created 420 atoms 227s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 227s create_atoms CPU = 0.001 seconds 227s 60 atoms in group lower 227s 60 atoms in group upper 227s 120 atoms in group boundary 227s 300 atoms in group flow 227s Setting atom values ... 227s 60 settings made for type 227s Setting atom values ... 227s 60 settings made for type 227s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 227s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 227s Neighbor list info ... 227s update: every = 1 steps, delay = 5 steps, check = yes 227s max neighbors/atom: 2000, page size: 100000 227s master list distance cutoff = 1.42246 227s ghost atom cutoff = 1.42246 227s binsize = 0.71123, bins = 37 32 1 227s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 227s (1) pair lj/cut, perpetual 227s attributes: half, newton on 227s pair build: half/bin/atomonly/newton 227s stencil: half/bin/2d 227s bin: standard 227s Setting up Verlet run ... 227s Unit style : lj 227s Current step : 0 227s Time step : 0.003 227s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 227s Step Temp E_pair E_mol TotEng Press Volume 227s 0 1 0 0 0.71190476 0.52314537 571.54286 227s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 228s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 228s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 228s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 228s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 228s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 228s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 228s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 228s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 228s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 228s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 228s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 228s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 228s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 228s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 228s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 228s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 228s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 228s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 228s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 228s Loop time of 0.185175 on 2 procs for 10000 steps with 420 atoms 228s 228s Performance: 13997534.868 tau/day, 54002.835 timesteps/s, 22.681 Matom-step/s 228s 98.8% CPU use with 2 MPI tasks x 1 OpenMP threads 228s 228s MPI task timing breakdown: 228s Section | min time | avg time | max time |%varavg| %total 228s --------------------------------------------------------------- 228s Pair | 0.034968 | 0.0353 | 0.035632 | 0.2 | 19.06 228s Neigh | 0.020409 | 0.020587 | 0.020765 | 0.1 | 11.12 228s Comm | 0.08171 | 0.083073 | 0.084435 | 0.5 | 44.86 228s Output | 0.00041713 | 0.001504 | 0.0025909 | 2.8 | 0.81 228s Modify | 0.024993 | 0.0254 | 0.025806 | 0.3 | 13.72 228s Other | | 0.01931 | | | 10.43 228s 228s Nlocal: 210 ave 214 max 206 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s Nghost: 51 ave 52 max 50 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s Neighs: 472 ave 494 max 450 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s 228s Total # of neighbors = 944 228s Ave neighs/atom = 2.247619 228s Neighbor list builds = 994 228s Dangerous builds = 0 228s Total wall time: 0:00:00 228s LAMMPS (7 Feb 2024 - Update 1) 228s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 228s using 1 OpenMP thread(s) per MPI task 228s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 228s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 228s 1 by 1 by 1 MPI processor grid 228s Created 420 atoms 228s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 228s create_atoms CPU = 0.000 seconds 228s 60 atoms in group lower 228s 60 atoms in group upper 228s 120 atoms in group boundary 228s 300 atoms in group flow 228s Setting atom values ... 228s 60 settings made for type 228s Setting atom values ... 228s 60 settings made for type 228s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 228s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 228s Neighbor list info ... 228s update: every = 1 steps, delay = 5 steps, check = yes 228s max neighbors/atom: 2000, page size: 100000 228s master list distance cutoff = 1.42246 228s ghost atom cutoff = 1.42246 228s binsize = 0.71123, bins = 37 32 1 228s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 228s (1) pair lj/cut, perpetual 228s attributes: half, newton on 228s pair build: half/bin/atomonly/newton 228s stencil: half/bin/2d 228s bin: standard 228s Setting up Verlet run ... 228s Unit style : lj 228s Current step : 0 228s Time step : 0.003 228s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 228s Step Temp E_pair E_mol TotEng Press Volume 228s 0 1 0 0 0.71190476 0.52314537 571.54286 228s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 228s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 228s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 228s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 228s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 228s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 228s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 228s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 228s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 228s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 228s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 228s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 228s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 228s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 228s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 228s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 228s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 228s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 228s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 228s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 228s Loop time of 0.180525 on 1 procs for 10000 steps with 420 atoms 228s 228s Performance: 14358136.778 tau/day, 55394.046 timesteps/s, 23.265 Matom-step/s 228s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 228s 228s MPI task timing breakdown: 228s Section | min time | avg time | max time |%varavg| %total 228s --------------------------------------------------------------- 228s Pair | 0.071828 | 0.071828 | 0.071828 | 0.0 | 39.79 228s Neigh | 0.038932 | 0.038932 | 0.038932 | 0.0 | 21.57 228s Comm | 0.0059458 | 0.0059458 | 0.0059458 | 0.0 | 3.29 228s Output | 0.00022514 | 0.00022514 | 0.00022514 | 0.0 | 0.12 228s Modify | 0.049465 | 0.049465 | 0.049465 | 0.0 | 27.40 228s Other | | 0.01413 | | | 7.83 228s 228s Nlocal: 420 ave 420 max 420 min 228s Histogram: 1 0 0 0 0 0 0 0 0 0 228s Nghost: 50 ave 50 max 50 min 228s Histogram: 1 0 0 0 0 0 0 0 0 0 228s Neighs: 946 ave 946 max 946 min 228s Histogram: 1 0 0 0 0 0 0 0 0 0 228s 228s Total # of neighbors = 946 228s Ave neighs/atom = 2.252381 228s Neighbor list builds = 979 228s Dangerous builds = 0 228s Total wall time: 0:00:00 228s LAMMPS (7 Feb 2024 - Update 1) 228s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 228s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 228s using 1 OpenMP thread(s) per MPI task 228s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 228s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 228s 2 by 1 by 1 MPI processor grid 228s Created 420 atoms 228s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 228s create_atoms CPU = 0.000 seconds 228s 60 atoms in group lower 228s 60 atoms in group upper 228s 120 atoms in group boundary 228s 300 atoms in group flow 228s Setting atom values ... 228s 60 settings made for type 228s Setting atom values ... 228s 60 settings made for type 228s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 228s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 228s Neighbor list info ... 228s update: every = 1 steps, delay = 5 steps, check = yes 228s max neighbors/atom: 2000, page size: 100000 228s master list distance cutoff = 1.42246 228s ghost atom cutoff = 1.42246 228s binsize = 0.71123, bins = 37 32 1 228s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 228s (1) pair lj/cut, perpetual 228s attributes: half, newton on 228s pair build: half/bin/atomonly/newton 228s stencil: half/bin/2d 228s bin: standard 228s Setting up Verlet run ... 228s Unit style : lj 228s Current step : 0 228s Time step : 0.003 228s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 228s Step Temp E_pair E_mol TotEng Press Volume 228s 0 1 0 0 0.71190476 0.52314537 571.54286 228s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 228s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 228s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 228s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 228s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 228s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 228s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 228s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 228s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 228s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 228s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 228s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 228s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 228s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 228s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 228s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 228s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 228s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 228s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 228s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 228s Loop time of 0.17082 on 2 procs for 10000 steps with 420 atoms 228s 228s Performance: 15173870.604 tau/day, 58541.167 timesteps/s, 24.587 Matom-step/s 228s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 228s 228s MPI task timing breakdown: 228s Section | min time | avg time | max time |%varavg| %total 228s --------------------------------------------------------------- 228s Pair | 0.038607 | 0.038674 | 0.038741 | 0.0 | 22.64 228s Neigh | 0.012082 | 0.012159 | 0.012236 | 0.1 | 7.12 228s Comm | 0.049871 | 0.050161 | 0.050451 | 0.1 | 29.36 228s Output | 0.00032438 | 0.0013147 | 0.002305 | 2.7 | 0.77 228s Modify | 0.053304 | 0.0536 | 0.053896 | 0.1 | 31.38 228s Other | | 0.01491 | | | 8.73 228s 228s Nlocal: 210 ave 211 max 209 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s Nghost: 50 ave 51 max 49 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s Neighs: 563.5 ave 569 max 558 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s 228s Total # of neighbors = 1127 228s Ave neighs/atom = 2.6833333 228s Neighbor list builds = 560 228s Dangerous builds = 0 228s Total wall time: 0:00:00 229s LAMMPS (7 Feb 2024 - Update 1) 229s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 229s using 1 OpenMP thread(s) per MPI task 229s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 229s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 229s 1 by 1 by 1 MPI processor grid 229s Created 420 atoms 229s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 229s create_atoms CPU = 0.000 seconds 229s 60 atoms in group lower 229s 60 atoms in group upper 229s 120 atoms in group boundary 229s 300 atoms in group flow 229s Setting atom values ... 229s 60 settings made for type 229s Setting atom values ... 229s 60 settings made for type 229s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 229s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 229s Neighbor list info ... 229s update: every = 1 steps, delay = 5 steps, check = yes 229s max neighbors/atom: 2000, page size: 100000 229s master list distance cutoff = 1.42246 229s ghost atom cutoff = 1.42246 229s binsize = 0.71123, bins = 37 32 1 229s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 229s (1) pair lj/cut, perpetual 229s attributes: half, newton on 229s pair build: half/bin/atomonly/newton 229s stencil: half/bin/2d 229s bin: standard 229s Setting up Verlet run ... 229s Unit style : lj 229s Current step : 0 229s Time step : 0.003 229s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 229s Step Temp E_pair E_mol TotEng Press Volume 229s 0 1 0 0 0.71190476 0.52314537 571.54286 229s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 229s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 229s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 229s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 229s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 229s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 229s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 229s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 229s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 229s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 229s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 229s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 229s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 229s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 229s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 229s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 229s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 229s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 229s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 229s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 229s Loop time of 0.21356 on 1 procs for 10000 steps with 420 atoms 229s 229s Performance: 12137091.028 tau/day, 46825.197 timesteps/s, 19.667 Matom-step/s 229s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 229s 229s MPI task timing breakdown: 229s Section | min time | avg time | max time |%varavg| %total 229s --------------------------------------------------------------- 229s Pair | 0.077416 | 0.077416 | 0.077416 | 0.0 | 36.25 229s Neigh | 0.023044 | 0.023044 | 0.023044 | 0.0 | 10.79 229s Comm | 0.0049052 | 0.0049052 | 0.0049052 | 0.0 | 2.30 229s Output | 0.00024858 | 0.00024858 | 0.00024858 | 0.0 | 0.12 229s Modify | 0.094545 | 0.094545 | 0.094545 | 0.0 | 44.27 229s Other | | 0.0134 | | | 6.28 229s 229s Nlocal: 420 ave 420 max 420 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Nghost: 51 ave 51 max 51 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Neighs: 1150 ave 1150 max 1150 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s 229s Total # of neighbors = 1150 229s Ave neighs/atom = 2.7380952 229s Neighbor list builds = 563 229s Dangerous builds = 0 229s Total wall time: 0:00:00 229s run: OK 229s autopkgtest [14:55:33]: test flow: -----------------------] 230s autopkgtest [14:55:34]: test flow: - - - - - - - - - - results - - - - - - - - - - 230s flow PASS 230s autopkgtest [14:55:34]: test friction: preparing testbed 231s Reading package lists... 232s Building dependency tree... 232s Reading state information... 232s Starting pkgProblemResolver with broken count: 0 232s Starting 2 pkgProblemResolver with broken count: 0 232s Done 233s The following NEW packages will be installed: 233s autopkgtest-satdep 233s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 233s Need to get 0 B/708 B of archives. 233s After this operation, 0 B of additional disk space will be used. 233s Get:1 /tmp/autopkgtest.jXH7B5/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 234s Selecting previously unselected package autopkgtest-satdep. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78954 files and directories currently installed.) 234s Preparing to unpack .../5-autopkgtest-satdep.deb ... 234s Unpacking autopkgtest-satdep (0) ... 234s Setting up autopkgtest-satdep (0) ... 237s (Reading database ... 78954 files and directories currently installed.) 237s Removing autopkgtest-satdep (0) ... 237s autopkgtest [14:55:41]: test friction: [----------------------- 238s LAMMPS (7 Feb 2024 - Update 1) 238s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 238s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 238s using 1 OpenMP thread(s) per MPI task 238s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 238s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 238s 2 by 1 by 1 MPI processor grid 238s Created 750 atoms 238s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 238s create_atoms CPU = 0.001 seconds 238s Created 750 atoms 238s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 238s create_atoms CPU = 0.000 seconds 238s Created 112 atoms 238s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 238s create_atoms CPU = 0.000 seconds 238s Created 112 atoms 238s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 238s create_atoms CPU = 0.000 seconds 238s 750 atoms in group lo 238s 862 atoms in group lo 238s 750 atoms in group hi 238s 862 atoms in group hi 238s 150 atoms in group lo-fixed 238s 150 atoms in group hi-fixed 238s 300 atoms in group boundary 238s 1424 atoms in group mobile 238s Setting atom values ... 238s 150 settings made for type 238s Setting atom values ... 238s 150 settings made for type 238s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 238s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 238s Neighbor list info ... 238s update: every = 1 steps, delay = 5 steps, check = yes 238s max neighbors/atom: 2000, page size: 100000 238s master list distance cutoff = 2.8 238s ghost atom cutoff = 2.8 238s binsize = 1.4, bins = 41 31 1 238s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 238s (1) pair lj/cut, perpetual 238s attributes: half, newton on 238s pair build: half/bin/atomonly/newton 238s stencil: half/bin/2d 238s bin: standard 238s Setting up Verlet run ... 238s Unit style : lj 238s Current step : 0 238s Time step : 0.0025 238s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 238s Step Temp E_pair E_mol TotEng Press Volume 238s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 239s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 239s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 239s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 239s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 239s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 239s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 239s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 239s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 240s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 240s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 240s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 240s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 240s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 240s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 240s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 240s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 240s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 241s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 241s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 241s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 241s Loop time of 2.39131 on 2 procs for 20000 steps with 1724 atoms 241s 241s Performance: 1806543.485 tau/day, 8363.627 timesteps/s, 14.419 Matom-step/s 241s 99.8% CPU use with 2 MPI tasks x 1 OpenMP threads 241s 241s MPI task timing breakdown: 241s Section | min time | avg time | max time |%varavg| %total 241s --------------------------------------------------------------- 241s Pair | 1.557 | 1.6887 | 1.8204 | 10.1 | 70.62 241s Neigh | 0.096109 | 0.10807 | 0.12004 | 3.6 | 4.52 241s Comm | 0.15765 | 0.30435 | 0.45104 | 26.6 | 12.73 241s Output | 0.00047085 | 0.0017413 | 0.0030117 | 3.0 | 0.07 241s Modify | 0.19006 | 0.2051 | 0.22015 | 3.3 | 8.58 241s Other | | 0.08332 | | | 3.48 241s 241s Nlocal: 862 ave 874 max 850 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s Nghost: 165.5 ave 166 max 165 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s Neighs: 7198 ave 7283 max 7113 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s 241s Total # of neighbors = 14396 241s Ave neighs/atom = 8.350348 241s Neighbor list builds = 720 241s Dangerous builds = 0 241s Total wall time: 0:00:02 241s LAMMPS (7 Feb 2024 - Update 1) 245s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 245s using 1 OpenMP thread(s) per MPI task 245s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 245s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 245s 1 by 1 by 1 MPI processor grid 245s Created 750 atoms 245s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 245s create_atoms CPU = 0.000 seconds 245s Created 750 atoms 245s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 245s create_atoms CPU = 0.000 seconds 245s Created 112 atoms 245s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 245s create_atoms CPU = 0.000 seconds 245s Created 112 atoms 245s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 245s create_atoms CPU = 0.000 seconds 245s 750 atoms in group lo 245s 862 atoms in group lo 245s 750 atoms in group hi 245s 862 atoms in group hi 245s 150 atoms in group lo-fixed 245s 150 atoms in group hi-fixed 245s 300 atoms in group boundary 245s 1424 atoms in group mobile 245s Setting atom values ... 245s 150 settings made for type 245s Setting atom values ... 245s 150 settings made for type 245s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 245s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 245s Neighbor list info ... 245s update: every = 1 steps, delay = 5 steps, check = yes 245s max neighbors/atom: 2000, page size: 100000 245s master list distance cutoff = 2.8 245s ghost atom cutoff = 2.8 245s binsize = 1.4, bins = 41 31 1 245s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 245s (1) pair lj/cut, perpetual 245s attributes: half, newton on 245s pair build: half/bin/atomonly/newton 245s stencil: half/bin/2d 245s bin: standard 245s Setting up Verlet run ... 245s Unit style : lj 245s Current step : 0 245s Time step : 0.0025 245s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 245s Step Temp E_pair E_mol TotEng Press Volume 245s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 245s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 245s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 245s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 245s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 245s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 245s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 245s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 245s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 245s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 245s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 245s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 245s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 245s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 245s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 245s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 245s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 245s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 245s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 245s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 245s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 245s Loop time of 4.09822 on 1 procs for 20000 steps with 1724 atoms 245s 245s Performance: 1054116.356 tau/day, 4880.168 timesteps/s, 8.413 Matom-step/s 245s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 245s 245s MPI task timing breakdown: 245s Section | min time | avg time | max time |%varavg| %total 245s --------------------------------------------------------------- 245s Pair | 3.3475 | 3.3475 | 3.3475 | 0.0 | 81.68 245s Neigh | 0.20052 | 0.20052 | 0.20052 | 0.0 | 4.89 245s Comm | 0.030367 | 0.030367 | 0.030367 | 0.0 | 0.74 245s Output | 0.00059968 | 0.00059968 | 0.00059968 | 0.0 | 0.01 245s Modify | 0.41737 | 0.41737 | 0.41737 | 0.0 | 10.18 245s Other | | 0.1019 | | | 2.49 245s 245s Nlocal: 1724 ave 1724 max 1724 min 245s Histogram: 1 0 0 0 0 0 0 0 0 0 245s Nghost: 145 ave 145 max 145 min 245s Histogram: 1 0 0 0 0 0 0 0 0 0 245s Neighs: 14397 ave 14397 max 14397 min 245s Histogram: 1 0 0 0 0 0 0 0 0 0 245s 245s Total # of neighbors = 14397 245s Ave neighs/atom = 8.3509281 245s Neighbor list builds = 723 245s Dangerous builds = 0 245s Total wall time: 0:00:04 245s run: OK 246s autopkgtest [14:55:50]: test friction: -----------------------] 246s autopkgtest [14:55:50]: test friction: - - - - - - - - - - results - - - - - - - - - - 246s friction PASS 246s autopkgtest [14:55:50]: test hugo: preparing testbed 248s Reading package lists... 248s Building dependency tree... 248s Reading state information... 249s Starting pkgProblemResolver with broken count: 0 249s Starting 2 pkgProblemResolver with broken count: 0 249s Done 250s The following NEW packages will be installed: 250s autopkgtest-satdep 250s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 250s Need to get 0 B/708 B of archives. 250s After this operation, 0 B of additional disk space will be used. 250s Get:1 /tmp/autopkgtest.jXH7B5/6-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 251s Selecting previously unselected package autopkgtest-satdep. 251s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78954 files and directories currently installed.) 251s Preparing to unpack .../6-autopkgtest-satdep.deb ... 251s Unpacking autopkgtest-satdep (0) ... 251s Setting up autopkgtest-satdep (0) ... 254s (Reading database ... 78954 files and directories currently installed.) 254s Removing autopkgtest-satdep (0) ... 254s autopkgtest [14:55:58]: test hugo: [----------------------- 256s LAMMPS (7 Feb 2024 - Update 1) 256s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 256s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 256s using 1 OpenMP thread(s) per MPI task 256s Lattice spacing in x,y,z = 1.4142135 2 2 256s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 256s 1 by 1 by 2 MPI processor grid 256s Created 1000 atoms 256s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 256s create_atoms CPU = 0.000 seconds 256s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 256s Neighbor list info ... 256s update: every = 1 steps, delay = 0 steps, check = yes 256s max neighbors/atom: 2000, page size: 100000 256s master list distance cutoff = 1.8475372 256s ghost atom cutoff = 1.8475372 256s binsize = 0.92376862, bins = 8 11 11 256s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 256s (1) pair lj/cubic, perpetual 256s attributes: half, newton on 256s pair build: half/bin/atomonly/newton 256s stencil: half/bin/3d 256s bin: standard 256s Setting up cg style minimization ... 256s Unit style : lj 256s Current step : 0 256s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 256s (src/min.cpp:219) 256s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 256s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 256s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 256s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 256s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 256s Loop time of 0.0327429 on 2 procs for 134 steps with 1000 atoms 256s 256s 94.6% CPU use with 2 MPI tasks x 1 OpenMP threads 256s 256s Minimization stats: 256s Stopping criterion = force tolerance 256s Energy initial, next-to-last, final = 256s -6.29375358358574 -6.33442531515467 -6.33442531515467 256s Force two-norm initial, final = 3395.2895 5.526433e-10 256s Force max component initial, final = 1960.2713 3.2059964e-10 256s Final line search alpha, max atom move = 1 3.2059964e-10 256s Iterations, force evaluations = 134 137 256s 256s MPI task timing breakdown: 256s Section | min time | avg time | max time |%varavg| %total 256s --------------------------------------------------------------- 256s Pair | 0.018315 | 0.020031 | 0.021747 | 1.2 | 61.18 256s Neigh | 0.0004023 | 0.00043298 | 0.00046366 | 0.0 | 1.32 256s Comm | 0.0040174 | 0.0057168 | 0.0074162 | 2.2 | 17.46 256s Output | 1.9799e-05 | 4.2238e-05 | 6.4677e-05 | 0.0 | 0.13 256s Modify | 0 | 0 | 0 | 0.0 | 0.00 256s Other | | 0.00652 | | | 19.91 256s 256s Nlocal: 500 ave 550 max 450 min 256s Histogram: 1 0 0 0 0 0 0 0 0 1 256s Nghost: 1214 ave 1264 max 1164 min 256s Histogram: 1 0 0 0 0 0 0 0 0 1 256s Neighs: 10500 ave 11550 max 9450 min 256s Histogram: 1 0 0 0 0 0 0 0 0 1 256s 256s Total # of neighbors = 21000 256s Ave neighs/atom = 21 256s Neighbor list builds = 1 256s Dangerous builds = 0 256s System init for write_restart ... 256s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 256s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 256s using 1 OpenMP thread(s) per MPI task 256s Reading restart file ... 256s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 256s restoring atom style atomic from restart 256s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 256s 1 by 1 by 2 MPI processor grid 256s restoring pair style lj/cubic from restart 256s 1000 atoms 256s read_restart CPU = 0.001 seconds 256s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 256s Neighbor list info ... 256s update: every = 1 steps, delay = 0 steps, check = yes 256s max neighbors/atom: 2000, page size: 100000 256s master list distance cutoff = 1.7475372 256s ghost atom cutoff = 1.7475372 256s binsize = 0.87376862, bins = 8 12 12 256s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 256s (1) pair lj/cubic, perpetual 256s attributes: half, newton on 256s pair build: half/bin/atomonly/newton 256s stencil: half/bin/3d 256s bin: standard 256s Setting up Verlet run ... 256s Unit style : lj 256s Current step : 0 256s Time step : 0.001 256s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 256s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 256s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 256s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 257s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 257s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 258s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 258s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 258s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 259s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 259s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 260s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 260s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 260s Loop time of 3.88003 on 2 procs for 10000 steps with 1000 atoms 260s 260s Performance: 222678.493 tau/day, 2577.297 timesteps/s, 2.577 Matom-step/s 260s 87.4% CPU use with 2 MPI tasks x 1 OpenMP threads 260s 260s MPI task timing breakdown: 260s Section | min time | avg time | max time |%varavg| %total 260s --------------------------------------------------------------- 260s Pair | 1.9715 | 2.0284 | 2.0854 | 4.0 | 52.28 260s Neigh | 0.085031 | 0.0868 | 0.088569 | 0.6 | 2.24 260s Comm | 0.74009 | 0.74405 | 0.748 | 0.5 | 19.18 260s Output | 0.007734 | 0.01203 | 0.016325 | 3.9 | 0.31 260s Modify | 0.75895 | 0.81677 | 0.8746 | 6.4 | 21.05 260s Other | | 0.1919 | | | 4.95 260s 260s Nlocal: 500 ave 509 max 491 min 260s Histogram: 1 0 0 0 0 0 0 0 0 1 260s Nghost: 1346.5 ave 1369 max 1324 min 260s Histogram: 1 0 0 0 0 0 0 0 0 1 260s Neighs: 10311.5 ave 10391 max 10232 min 260s Histogram: 1 0 0 0 0 0 0 0 0 1 260s 260s Total # of neighbors = 20623 260s Ave neighs/atom = 20.623 260s Neighbor list builds = 205 260s Dangerous builds = 0 260s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 260s using 1 OpenMP thread(s) per MPI task 260s Reading restart file ... 260s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 260s restoring atom style atomic from restart 260s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 260s 1 by 1 by 2 MPI processor grid 260s restoring pair style lj/cubic from restart 260s 1000 atoms 260s read_restart CPU = 0.021 seconds 260s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 260s Neighbor list info ... 260s update: every = 1 steps, delay = 0 steps, check = yes 260s max neighbors/atom: 2000, page size: 100000 260s master list distance cutoff = 1.7475372 260s ghost atom cutoff = 1.7475372 260s binsize = 0.87376862, bins = 8 12 12 260s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 260s (1) pair lj/cubic, perpetual 260s attributes: half, newton on 260s pair build: half/bin/atomonly/newton 260s stencil: half/bin/3d 260s bin: standard 260s Setting up Verlet run ... 260s Unit style : lj 260s Current step : 0 260s Time step : 0.001 260s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 260s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 260s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 260s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 261s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 261s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 261s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 261s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 262s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 262s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 262s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 262s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 262s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 262s Loop time of 2.45478 on 2 procs for 10000 steps with 1000 atoms 262s 262s Performance: 351965.814 tau/day, 4073.678 timesteps/s, 4.074 Matom-step/s 262s 94.7% CPU use with 2 MPI tasks x 1 OpenMP threads 262s 262s MPI task timing breakdown: 262s Section | min time | avg time | max time |%varavg| %total 262s --------------------------------------------------------------- 262s Pair | 1.6851 | 1.6916 | 1.6982 | 0.5 | 68.91 262s Neigh | 0.0041608 | 0.0041983 | 0.0042358 | 0.1 | 0.17 262s Comm | 0.31557 | 0.32178 | 0.328 | 1.1 | 13.11 262s Output | 0.00050358 | 0.0013731 | 0.0022426 | 2.3 | 0.06 262s Modify | 0.38768 | 0.39107 | 0.39447 | 0.5 | 15.93 262s Other | | 0.04474 | | | 1.82 262s 262s Nlocal: 500 ave 508 max 492 min 262s Histogram: 1 0 0 0 0 0 0 0 0 1 262s Nghost: 1214 ave 1222 max 1206 min 262s Histogram: 1 0 0 0 0 0 0 0 0 1 262s Neighs: 10500 ave 10668 max 10332 min 262s Histogram: 1 0 0 0 0 0 0 0 0 1 262s 262s Total # of neighbors = 21000 262s Ave neighs/atom = 21 262s Neighbor list builds = 10 262s Dangerous builds = 0 262s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 262s using 1 OpenMP thread(s) per MPI task 262s Reading restart file ... 262s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 262s restoring atom style atomic from restart 262s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 262s 1 by 1 by 2 MPI processor grid 262s restoring pair style lj/cubic from restart 262s 1000 atoms 262s read_restart CPU = 0.001 seconds 262s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 262s Neighbor list info ... 262s update: every = 1 steps, delay = 0 steps, check = yes 262s max neighbors/atom: 2000, page size: 100000 262s master list distance cutoff = 1.7475372 262s ghost atom cutoff = 1.7475372 262s binsize = 0.87376862, bins = 8 12 12 262s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 262s (1) pair lj/cubic, perpetual 262s attributes: half, newton on 262s pair build: half/bin/atomonly/newton 262s stencil: half/bin/3d 262s bin: standard 262s Setting up Verlet run ... 262s Unit style : lj 262s Current step : 0 262s Time step : 0.001 262s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 262s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 262s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 263s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 263s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 263s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 263s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 264s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 264s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 264s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 265s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 265s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 265s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 265s Loop time of 2.53217 on 2 procs for 10000 steps with 1000 atoms 265s 265s Performance: 341209.780 tau/day, 3949.187 timesteps/s, 3.949 Matom-step/s 265s 93.9% CPU use with 2 MPI tasks x 1 OpenMP threads 265s 265s MPI task timing breakdown: 265s Section | min time | avg time | max time |%varavg| %total 265s --------------------------------------------------------------- 265s Pair | 1.6985 | 1.7188 | 1.7391 | 1.6 | 67.88 265s Neigh | 0.040938 | 0.041205 | 0.041472 | 0.1 | 1.63 265s Comm | 0.31018 | 0.32989 | 0.34959 | 3.4 | 13.03 265s Output | 0.00051906 | 0.0015606 | 0.0026021 | 2.6 | 0.06 265s Modify | 0.3974 | 0.39766 | 0.39792 | 0.0 | 15.70 265s Other | | 0.04304 | | | 1.70 265s 265s Nlocal: 500 ave 510 max 490 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s Nghost: 1216.5 ave 1227 max 1206 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s Neighs: 10311 ave 10520 max 10102 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s 265s Total # of neighbors = 20622 265s Ave neighs/atom = 20.622 265s Neighbor list builds = 95 265s Dangerous builds = 0 265s Total wall time: 0:00:09 267s LAMMPS (7 Feb 2024 - Update 1) 267s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 267s using 1 OpenMP thread(s) per MPI task 267s Lattice spacing in x,y,z = 1.4142135 2 2 267s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 267s 1 by 1 by 1 MPI processor grid 267s Created 1000 atoms 267s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 267s create_atoms CPU = 0.000 seconds 267s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 267s Neighbor list info ... 267s update: every = 1 steps, delay = 0 steps, check = yes 267s max neighbors/atom: 2000, page size: 100000 267s master list distance cutoff = 1.8475372 267s ghost atom cutoff = 1.8475372 267s binsize = 0.92376862, bins = 8 11 11 267s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 267s (1) pair lj/cubic, perpetual 267s attributes: half, newton on 267s pair build: half/bin/atomonly/newton 267s stencil: half/bin/3d 267s bin: standard 267s Setting up cg style minimization ... 267s Unit style : lj 267s Current step : 0 267s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 267s (src/min.cpp:219) 267s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 267s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 267s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 267s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 267s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 267s Loop time of 0.052182 on 1 procs for 134 steps with 1000 atoms 267s 267s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 267s 267s Minimization stats: 267s Stopping criterion = force tolerance 267s Energy initial, next-to-last, final = 267s -6.29375358358556 -6.33442531515503 -6.33442531515503 267s Force two-norm initial, final = 3395.2895 5.6047601e-10 267s Force max component initial, final = 1960.2713 3.2666928e-10 267s Final line search alpha, max atom move = 1 3.2666928e-10 267s Iterations, force evaluations = 134 137 267s 267s MPI task timing breakdown: 267s Section | min time | avg time | max time |%varavg| %total 267s --------------------------------------------------------------- 267s Pair | 0.041158 | 0.041158 | 0.041158 | 0.0 | 78.87 267s Neigh | 0.00093901 | 0.00093901 | 0.00093901 | 0.0 | 1.80 267s Comm | 0.0011806 | 0.0011806 | 0.0011806 | 0.0 | 2.26 267s Output | 2.2519e-05 | 2.2519e-05 | 2.2519e-05 | 0.0 | 0.04 267s Modify | 0 | 0 | 0 | 0.0 | 0.00 267s Other | | 0.008882 | | | 17.02 267s 267s Nlocal: 1000 ave 1000 max 1000 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s Nghost: 1724 ave 1724 max 1724 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s Neighs: 21000 ave 21000 max 21000 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s 267s Total # of neighbors = 21000 267s Ave neighs/atom = 21 267s Neighbor list builds = 1 267s Dangerous builds = 0 267s System init for write_restart ... 267s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 267s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 267s using 1 OpenMP thread(s) per MPI task 267s Reading restart file ... 267s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 267s restoring atom style atomic from restart 267s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 267s 1 by 1 by 1 MPI processor grid 267s restoring pair style lj/cubic from restart 267s 1000 atoms 267s read_restart CPU = 0.000 seconds 267s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 267s Neighbor list info ... 267s update: every = 1 steps, delay = 0 steps, check = yes 267s max neighbors/atom: 2000, page size: 100000 267s master list distance cutoff = 1.7475372 267s ghost atom cutoff = 1.7475372 267s binsize = 0.87376862, bins = 8 12 12 267s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 272s (1) pair lj/cubic, perpetual 272s attributes: half, newton on 272s pair build: half/bin/atomonly/newton 272s stencil: half/bin/3d 272s bin: standard 272s Setting up Verlet run ... 272s Unit style : lj 272s Current step : 0 272s Time step : 0.001 272s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 272s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 272s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 272s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 272s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 272s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 272s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 272s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 272s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 272s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 272s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 272s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 272s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 272s Loop time of 5.05002 on 1 procs for 10000 steps with 1000 atoms 272s 272s Performance: 171088.366 tau/day, 1980.189 timesteps/s, 1.980 Matom-step/s 272s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 272s 272s MPI task timing breakdown: 272s Section | min time | avg time | max time |%varavg| %total 272s --------------------------------------------------------------- 272s Pair | 4.0155 | 4.0155 | 4.0155 | 0.0 | 79.51 272s Neigh | 0.17811 | 0.17811 | 0.17811 | 0.0 | 3.53 272s Comm | 0.092964 | 0.092964 | 0.092964 | 0.0 | 1.84 272s Output | 0.0061593 | 0.0061593 | 0.0061593 | 0.0 | 0.12 272s Modify | 0.71105 | 0.71105 | 0.71105 | 0.0 | 14.08 272s Other | | 0.04629 | | | 0.92 272s 272s Nlocal: 1000 ave 1000 max 1000 min 272s Histogram: 1 0 0 0 0 0 0 0 0 0 272s Nghost: 1886 ave 1886 max 1886 min 272s Histogram: 1 0 0 0 0 0 0 0 0 0 272s Neighs: 20874 ave 20874 max 20874 min 272s Histogram: 1 0 0 0 0 0 0 0 0 0 272s 272s Total # of neighbors = 20874 272s Ave neighs/atom = 20.874 272s Neighbor list builds = 188 272s Dangerous builds = 0 272s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 272s using 1 OpenMP thread(s) per MPI task 272s Reading restart file ... 272s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 272s restoring atom style atomic from restart 272s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 272s 1 by 1 by 1 MPI processor grid 272s restoring pair style lj/cubic from restart 272s 1000 atoms 272s read_restart CPU = 0.071 seconds 272s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 272s Neighbor list info ... 277s update: every = 1 steps, delay = 0 steps, check = yes 277s max neighbors/atom: 2000, page size: 100000 277s master list distance cutoff = 1.7475372 277s ghost atom cutoff = 1.7475372 277s binsize = 0.87376862, bins = 8 12 12 277s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 277s (1) pair lj/cubic, perpetual 277s attributes: half, newton on 277s pair build: half/bin/atomonly/newton 277s stencil: half/bin/3d 277s bin: standard 277s Setting up Verlet run ... 277s Unit style : lj 277s Current step : 0 277s Time step : 0.001 277s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 277s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 277s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 277s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 277s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 277s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 277s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 277s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 277s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 277s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 277s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 277s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 277s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 277s Loop time of 4.19612 on 1 procs for 10000 steps with 1000 atoms 277s 277s Performance: 205904.300 tau/day, 2383.152 timesteps/s, 2.383 Matom-step/s 277s 97.9% CPU use with 1 MPI tasks x 1 OpenMP threads 277s 277s MPI task timing breakdown: 277s Section | min time | avg time | max time |%varavg| %total 277s --------------------------------------------------------------- 277s Pair | 3.4709 | 3.4709 | 3.4709 | 0.0 | 82.72 277s Neigh | 0.0093024 | 0.0093024 | 0.0093024 | 0.0 | 0.22 277s Comm | 0.08307 | 0.08307 | 0.08307 | 0.0 | 1.98 277s Output | 0.00065706 | 0.00065706 | 0.00065706 | 0.0 | 0.02 277s Modify | 0.59622 | 0.59622 | 0.59622 | 0.0 | 14.21 277s Other | | 0.03601 | | | 0.86 277s 277s Nlocal: 1000 ave 1000 max 1000 min 277s Histogram: 1 0 0 0 0 0 0 0 0 0 277s Nghost: 1724 ave 1724 max 1724 min 277s Histogram: 1 0 0 0 0 0 0 0 0 0 277s Neighs: 21000 ave 21000 max 21000 min 277s Histogram: 1 0 0 0 0 0 0 0 0 0 277s 277s Total # of neighbors = 21000 277s Ave neighs/atom = 21 277s Neighbor list builds = 11 277s Dangerous builds = 0 277s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 277s using 1 OpenMP thread(s) per MPI task 277s Reading restart file ... 277s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 277s restoring atom style atomic from restart 283s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 283s 1 by 1 by 1 MPI processor grid 283s restoring pair style lj/cubic from restart 283s 1000 atoms 283s read_restart CPU = 0.014 seconds 283s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 283s Neighbor list info ... 283s update: every = 1 steps, delay = 0 steps, check = yes 283s max neighbors/atom: 2000, page size: 100000 283s master list distance cutoff = 1.7475372 283s ghost atom cutoff = 1.7475372 283s binsize = 0.87376862, bins = 8 12 12 283s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 283s (1) pair lj/cubic, perpetual 283s attributes: half, newton on 283s pair build: half/bin/atomonly/newton 283s stencil: half/bin/3d 283s bin: standard 283s Setting up Verlet run ... 283s Unit style : lj 283s Current step : 0 283s Time step : 0.001 283s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 283s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 283s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 283s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 283s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 283s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 283s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 283s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 283s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 283s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 283s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 283s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 283s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 283s Loop time of 4.42006 on 1 procs for 10000 steps with 1000 atoms 283s 283s Performance: 195472.446 tau/day, 2262.413 timesteps/s, 2.262 Matom-step/s 283s 97.9% CPU use with 1 MPI tasks x 1 OpenMP threads 283s 283s MPI task timing breakdown: 283s Section | min time | avg time | max time |%varavg| %total 283s --------------------------------------------------------------- 283s Pair | 3.4319 | 3.4319 | 3.4319 | 0.0 | 77.64 283s Neigh | 0.080231 | 0.080231 | 0.080231 | 0.0 | 1.82 283s Comm | 0.085925 | 0.085925 | 0.085925 | 0.0 | 1.94 283s Output | 0.025307 | 0.025307 | 0.025307 | 0.0 | 0.57 283s Modify | 0.75765 | 0.75765 | 0.75765 | 0.0 | 17.14 283s Other | | 0.03903 | | | 0.88 283s 283s Nlocal: 1000 ave 1000 max 1000 min 283s Histogram: 1 0 0 0 0 0 0 0 0 0 283s Nghost: 1724 ave 1724 max 1724 min 283s Histogram: 1 0 0 0 0 0 0 0 0 0 283s Neighs: 20654 ave 20654 max 20654 min 283s Histogram: 1 0 0 0 0 0 0 0 0 0 283s 283s Total # of neighbors = 20654 283s Ave neighs/atom = 20.654 283s Neighbor list builds = 94 283s Dangerous builds = 0 283s Total wall time: 0:00:13 283s run: OK 284s autopkgtest [14:56:28]: test hugo: -----------------------] 284s autopkgtest [14:56:28]: test hugo: - - - - - - - - - - results - - - - - - - - - - 284s hugo PASS 285s autopkgtest [14:56:29]: test command1: preparing testbed 414s autopkgtest [14:58:38]: testbed dpkg architecture: arm64 414s autopkgtest [14:58:38]: testbed apt version: 2.7.12 414s autopkgtest [14:58:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 415s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 415s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3694 kB] 416s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 416s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 416s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 416s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 416s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 416s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 416s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 416s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4005 kB] 416s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 416s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 416s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 418s Fetched 9095 kB in 2s (4262 kB/s) 418s Reading package lists... 421s Reading package lists... 421s Building dependency tree... 421s Reading state information... 421s Calculating upgrade... 422s The following packages will be REMOVED: 422s libreadline8 libssl3 422s The following NEW packages will be installed: 422s libreadline8t64 libssl3t64 422s The following packages have been kept back: 422s curl libpython3.12-minimal libpython3.12-stdlib python3.12 422s python3.12-minimal 422s The following packages will be upgraded: 422s openssl readline-common ubuntu-minimal ubuntu-standard 422s 4 upgraded, 2 newly installed, 2 to remove and 5 not upgraded. 422s Need to get 2984 kB of archives. 422s After this operation, 140 kB of additional disk space will be used. 422s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 422s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 422s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 422s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 422s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 422s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 423s Fetched 2984 kB in 1s (3701 kB/s) 424s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 424s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 424s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 424s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 424s parted depends on libreadline8 (>= 6.0). 424s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 424s gpgsm depends on libreadline8 (>= 6.0). 424s gpgconf depends on libreadline8 (>= 6.0). 424s gpg depends on libreadline8 (>= 6.0). 424s gawk depends on libreadline8 (>= 6.0). 424s fdisk depends on libreadline8 (>= 6.0). 424s 424s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 424s Removing libreadline8:arm64 (8.2-3) ... 424s Selecting previously unselected package libreadline8t64:arm64. 424s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74746 files and directories currently installed.) 424s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 424s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 424s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 424s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 424s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 424s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 424s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 424s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 424s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 424s wget depends on libssl3 (>= 3.0.0). 424s u-boot-tools depends on libssl3 (>= 3.0.0). 424s tnftp depends on libssl3 (>= 3.0.0). 424s tcpdump depends on libssl3 (>= 3.0.0). 424s systemd-resolved depends on libssl3 (>= 3.0.0). 424s systemd depends on libssl3 (>= 3.0.0). 424s sudo depends on libssl3 (>= 3.0.0). 424s sbsigntool depends on libssl3 (>= 3.0.0). 424s rsync depends on libssl3 (>= 3.0.0). 424s python3-cryptography depends on libssl3 (>= 3.0.0). 424s openssh-server depends on libssl3 (>= 3.0.10). 424s openssh-client depends on libssl3 (>= 3.0.10). 424s mtd-utils depends on libssl3 (>= 3.0.0). 424s mokutil depends on libssl3 (>= 3.0.0). 424s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 424s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 424s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 424s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 424s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 424s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 424s libnvme1 depends on libssl3 (>= 3.0.0). 424s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 424s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 424s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 424s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 424s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 424s kmod depends on libssl3 (>= 3.0.0). 424s dhcpcd-base depends on libssl3 (>= 3.0.0). 424s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 424s 424s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 424s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 424s Selecting previously unselected package libssl3t64:arm64. 424s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 424s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 424s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 424s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 424s Unpacking ubuntu-minimal (1.536) over (1.535) ... 424s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 424s Unpacking ubuntu-standard (1.536) over (1.535) ... 424s Setting up ubuntu-minimal (1.536) ... 424s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 424s Setting up ubuntu-standard (1.536) ... 424s Setting up openssl (3.0.13-0ubuntu1) ... 425s Setting up readline-common (8.2-3.1) ... 425s Setting up libreadline8t64:arm64 (8.2-3.1) ... 425s Processing triggers for libc-bin (2.39-0ubuntu2) ... 425s Processing triggers for man-db (2.12.0-3) ... 425s Processing triggers for install-info (7.1-3) ... 426s Reading package lists... 426s Building dependency tree... 426s Reading state information... 427s 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. 428s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 428s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 428s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 428s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 429s Reading package lists... 429s Reading package lists... 430s Building dependency tree... 430s Reading state information... 430s Calculating upgrade... 431s The following packages have been kept back: 431s curl libpython3.12-minimal libpython3.12-stdlib python3.12 431s python3.12-minimal 431s 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. 431s Reading package lists... 431s Building dependency tree... 431s Reading state information... 432s 0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded. 436s Reading package lists... 436s Building dependency tree... 436s Reading state information... 437s Starting pkgProblemResolver with broken count: 0 437s Starting 2 pkgProblemResolver with broken count: 0 437s Done 437s The following additional packages will be installed: 437s autoconf automake autotools-dev cpp-12 curl fontconfig-config 437s fonts-dejavu-core fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 437s libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin 437s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl3t64-gnutls libcurl4t64 437s libdb5.3t64 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 437s libdrm-radeon1 libevent-2.1-7 libevent-dev libevent-extra-2.1-7 437s libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 437s libfontconfig1 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 437s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 437s libglx0 libgnutls30t64 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 437s libhogweed6t64 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-dev 437s libhwloc-plugins libhwloc15 libibverbs-dev libisl23 libitm1 libjbig0 437s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjsoncpp25 437s libkim-api2 liblammps-dev liblammps0t64 liblapack3 liblerc4 libllvm17 437s liblsan0 libltdl-dev libltdl7 libmpc3 libmunge2 libnetcdf19t64 libnettle8t64 437s libnl-3-dev libnl-route-3-dev libnsl-dev libnuma-dev libogg0 libopengl0 437s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 437s libpmix2t64 libpnetcdf0d libpng16-16t64 libproj25 libpsl5t64 437s libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 librdmacm1t64 437s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 437s libtheora0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libucx0 437s libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 437s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 437s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 437s libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev m4 437s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 437s openmpi-common proj-data python3-lammps python3.12 python3.12-minimal 437s rpcsvc-proto x11-common zlib1g-dev 437s Suggested packages: 437s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 437s cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev glibc-doc manpages-dev 437s libfftw3-bin libfftw3-dev glew-utils gnutls-bin libjs-jquery-ui-docs 437s libtool-doc openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples m4-doc 437s opencl-icd gfortran | fortran-compiler python3.12-venv python3.12-doc 437s binfmt-support 437s Recommended packages: 437s manpages manpages-dev libc-devtools libgl1-amber-dri javascript-common 437s lammps-doc libtool libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd 437s python3-mpi4py 438s The following packages will be REMOVED: 438s libcurl3-gnutls libcurl4 libdb5.3 libgnutls30 libhogweed6 libnettle8 438s libpng16-16 libpsl5 438s The following NEW packages will be installed: 438s autoconf automake autopkgtest-satdep autotools-dev cpp-12 fontconfig-config 438s fonts-dejavu-core fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 438s libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 libc-dev-bin 438s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl3t64-gnutls libcurl4t64 438s libdb5.3t64 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 438s libdrm-radeon1 libevent-2.1-7 libevent-dev libevent-extra-2.1-7 438s libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 438s libfontconfig1 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 438s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 438s libglx0 libgnutls30t64 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 438s libhogweed6t64 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-dev 438s libhwloc-plugins libhwloc15 libibverbs-dev libisl23 libitm1 libjbig0 438s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjsoncpp25 438s libkim-api2 liblammps-dev liblammps0t64 liblapack3 liblerc4 libllvm17 438s liblsan0 libltdl-dev libltdl7 libmpc3 libmunge2 libnetcdf19t64 libnettle8t64 438s libnl-3-dev libnl-route-3-dev libnsl-dev libnuma-dev libogg0 libopengl0 438s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 438s libpmix2t64 libpnetcdf0d libpng16-16t64 libproj25 libpsl5t64 438s libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 438s libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtirpc-dev libtk8.6 libtsan2 438s libubsan1 libucx0 libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 438s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 438s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 438s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev m4 438s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 438s openmpi-common proj-data python3-lammps rpcsvc-proto x11-common zlib1g-dev 438s The following packages will be upgraded: 438s curl libpython3.12-minimal libpython3.12-stdlib python3.12 438s python3.12-minimal 438s 5 upgraded, 146 newly installed, 8 to remove and 0 not upgraded. 438s Need to get 182 MB/182 MB of archives. 438s After this operation, 704 MB of additional disk space will be used. 438s Get:1 /tmp/autopkgtest.jXH7B5/7-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 439s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnettle8t64 arm64 3.9.1-2.2 [192 kB] 439s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libhogweed6t64 arm64 3.9.1-2.2 [199 kB] 439s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgnutls30t64 arm64 3.8.3-1.1ubuntu2 [1042 kB] 439s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 439s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 439s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 439s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl3t64-gnutls arm64 8.5.0-2ubuntu7 [327 kB] 439s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.12 arm64 3.12.2-4build2 [645 kB] 439s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.12-minimal arm64 3.12.2-4build2 [2189 kB] 439s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12-minimal arm64 3.12.2-4build2 [829 kB] 439s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12-stdlib arm64 3.12.2-4build2 [2002 kB] 439s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-5build1 [719 kB] 439s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 439s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB] 439s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] 439s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] 439s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 439s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12-base arm64 12.3.0-15ubuntu1 [45.5 kB] 439s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 439s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 439s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 cpp-12 arm64 12.3.0-15ubuntu1 [9585 kB] 440s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 440s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 440s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 440s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 440s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 440s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 440s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 440s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 440s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 440s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 440s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 440s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 440s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libgcc-12-dev arm64 12.3.0-15ubuntu1 [1157 kB] 440s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 gcc-12 arm64 12.3.0-15ubuntu1 [19.1 MB] 441s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 441s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libgfortran-12-dev arm64 12.3.0-15ubuntu1 [471 kB] 441s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 441s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 441s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 441s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 441s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 441s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 441s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 441s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 gfortran-12 arm64 12.3.0-15ubuntu1 [10.1 MB] 441s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 441s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 442s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 443s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 443s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 443s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 443s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 443s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 443s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 443s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 443s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 443s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 443s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 443s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 443s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 443s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 443s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 443s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 443s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-2.1-7 arm64 2.1.12-stable-9 [138 kB] 443s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-9 [61.3 kB] 443s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 443s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-9 [14.6 kB] 443s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-dev arm64 2.1.12-stable-9 [282 kB] 443s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 443s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB] 443s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB] 443s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 443s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 443s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 443s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 443s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 443s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 443s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 443s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 443s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 443s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 443s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 443s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 444s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 444s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 444s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 444s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 444s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 444s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 444s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2 [41.5 kB] 444s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libglew2.2 arm64 2.2.0-4 [200 kB] 444s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 444s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [1192 kB] 444s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu3 [55.8 kB] 444s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 444s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 444s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 444s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 444s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 444s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 444s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libkim-api2 arm64 2.3.0-1 [554 kB] 444s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 444s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libnetcdf19t64 arm64 1:4.9.2-5ubuntu3 [471 kB] 444s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 444s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 444s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 444s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 444s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 444s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix2t64 arm64 5.0.1-4.1 [655 kB] 444s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 445s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi3t64 arm64 4.1.6-6ubuntu1 [2463 kB] 445s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpnetcdf0d arm64 1.12.3-2 [842 kB] 445s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12t64 arm64 3.12.2-4build2 [2279 kB] 445s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 445s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libogg0 arm64 1.3.5-3 [22.1 kB] 445s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 445s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 445s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 445s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 445s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 445s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 445s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 445s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 445s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbmalloc2 arm64 2021.11.0-2ubuntu2 [43.8 kB] 445s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbbbind-2-5 arm64 2021.11.0-2ubuntu2 [16.4 kB] 445s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libtbb12 arm64 2021.11.0-2ubuntu2 [79.9 kB] 445s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 445s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libtheora0 arm64 1.1.1+dfsg.1-16.1 [221 kB] 445s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 445s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 445s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 445s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 445s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libvtk9.1t64 arm64 9.1.0+really9.1.0+dfsg2-7.1build2 [19.2 MB] 446s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 liblammps0t64 arm64 20240207+dfsg-1.1build2 [6752 kB] 446s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-common all 4.1.6-6ubuntu1 [170 kB] 446s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-3-dev arm64 3.7.0-0.3 [105 kB] 446s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libnl-route-3-dev arm64 3.7.0-0.3 [225 kB] 446s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libibverbs-dev arm64 50.0-2 [686 kB] 446s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma-dev arm64 2.0.18-1 [39.5 kB] 446s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 446s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl-dev arm64 2.4.7-7 [170 kB] 446s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-dev arm64 2.10.0-1 [259 kB] 446s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 446s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix-dev arm64 5.0.1-4.1 [4022 kB] 446s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-bin arm64 4.1.6-6ubuntu1 [113 kB] 446s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi-dev arm64 4.1.6-6ubuntu1 [864 kB] 446s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-dev arm64 1.15 [3118 B] 446s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 liblammps-dev arm64 20240207+dfsg-1.1build2 [112 kB] 446s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 446s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-lammps arm64 20240207+dfsg-1.1build2 [70.5 kB] 447s Fetched 182 MB in 8s (21.7 MB/s) 447s dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: 447s librtmp1:arm64 depends on libhogweed6. 447s libjcat1:arm64 depends on libhogweed6. 447s libgnutls30:arm64 depends on libhogweed6 (>= 3.6). 447s 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74768 files and directories currently installed.) 448s Removing libhogweed6:arm64 (3.9.1-2) ... 448s dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: 448s librtmp1:arm64 depends on libnettle8. 448s libgnutls30:arm64 depends on libnettle8 (>= 3.9~). 448s libcurl3-gnutls:arm64 depends on libnettle8. 448s libarchive13:arm64 depends on libnettle8. 448s 448s Removing libnettle8:arm64 (3.9.1-2) ... 448s Selecting previously unselected package libnettle8t64:arm64. 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 448s Preparing to unpack .../libnettle8t64_3.9.1-2.2_arm64.deb ... 448s Unpacking libnettle8t64:arm64 (3.9.1-2.2) ... 448s Selecting previously unselected package libhogweed6t64:arm64. 448s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_arm64.deb ... 448s Unpacking libhogweed6t64:arm64 (3.9.1-2.2) ... 448s dpkg: libgnutls30:arm64: dependency problems, but removing anyway as you requested: 448s u-boot-tools depends on libgnutls30 (>= 3.7.3). 448s librtmp1:arm64 depends on libgnutls30 (>= 3.7.2). 448s libldap2:arm64 depends on libgnutls30 (>= 3.8.2). 448s libjcat1:arm64 depends on libgnutls30 (>= 3.7.3). 448s libcurl3-gnutls:arm64 depends on libgnutls30 (>= 3.8.2). 448s fwupd depends on libgnutls30 (>= 3.7.3). 448s dirmngr depends on libgnutls30 (>= 3.8.1). 448s apt depends on libgnutls30 (>= 3.8.1). 448s 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 448s Removing libgnutls30:arm64 (3.8.3-1ubuntu1) ... 448s Selecting previously unselected package libgnutls30t64:arm64. 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 448s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_arm64.deb ... 448s Unpacking libgnutls30t64:arm64 (3.8.3-1.1ubuntu2) ... 448s dpkg: libcurl4:arm64: dependency problems, but removing anyway as you requested: 448s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 448s 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74789 files and directories currently installed.) 448s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 448s Selecting previously unselected package libcurl4t64:arm64. 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74784 files and directories currently installed.) 448s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 448s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 448s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 448s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 448s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 448s wget depends on libpsl5 (>= 0.16.0). 448s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 448s 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74790 files and directories currently installed.) 448s Removing libpsl5:arm64 (0.21.2-1build1) ... 448s Selecting previously unselected package libpsl5t64:arm64. 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 448s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 448s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 448s dpkg: libcurl3-gnutls:arm64: dependency problems, but removing anyway as you requested: 448s libfwupd2:arm64 depends on libcurl3-gnutls (>= 7.63.0). 448s fwupd depends on libcurl3-gnutls (>= 7.63.0). 448s 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74791 files and directories currently installed.) 448s Removing libcurl3-gnutls:arm64 (8.5.0-2ubuntu2) ... 448s Selecting previously unselected package libcurl3t64-gnutls:arm64. 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74784 files and directories currently installed.) 448s Preparing to unpack .../libcurl3t64-gnutls_8.5.0-2ubuntu7_arm64.deb ... 448s Unpacking libcurl3t64-gnutls:arm64 (8.5.0-2ubuntu7) ... 448s Preparing to unpack .../python3.12_3.12.2-4build2_arm64.deb ... 448s Unpacking python3.12 (3.12.2-4build2) over (3.12.2-1) ... 448s Preparing to unpack .../python3.12-minimal_3.12.2-4build2_arm64.deb ... 448s Unpacking python3.12-minimal (3.12.2-4build2) over (3.12.2-1) ... 449s Preparing to unpack .../libpython3.12-minimal_3.12.2-4build2_arm64.deb ... 449s Unpacking libpython3.12-minimal:arm64 (3.12.2-4build2) over (3.12.2-1) ... 449s Preparing to unpack .../libpython3.12-stdlib_3.12.2-4build2_arm64.deb ... 449s Unpacking libpython3.12-stdlib:arm64 (3.12.2-4build2) over (3.12.2-1) ... 449s dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: 449s libsasl2-modules-db:arm64 depends on libdb5.3. 449s libperl5.38:arm64 depends on libdb5.3. 449s libpam-modules:arm64 depends on libdb5.3. 449s iproute2 depends on libdb5.3. 449s apt-utils depends on libdb5.3. 449s 449s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74789 files and directories currently installed.) 449s Removing libdb5.3:arm64 (5.3.28+dfsg2-4) ... 449s Selecting previously unselected package libdb5.3t64:arm64. 449s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74783 files and directories currently installed.) 449s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5build1_arm64.deb ... 449s Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-5build1) ... 449s Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-5build1) ... 449s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 449s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 449s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 449s 449s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74789 files and directories currently installed.) 449s Removing libpng16-16:arm64 (1.6.43-1) ... 449s Selecting previously unselected package libpng16-16t64:arm64. 449s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 449s Preparing to unpack .../000-libpng16-16t64_1.6.43-3_arm64.deb ... 449s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 449s Selecting previously unselected package m4. 449s Preparing to unpack .../001-m4_1.4.19-4_arm64.deb ... 449s Unpacking m4 (1.4.19-4) ... 449s Selecting previously unselected package autoconf. 449s Preparing to unpack .../002-autoconf_2.71-3_all.deb ... 449s Unpacking autoconf (2.71-3) ... 449s Selecting previously unselected package autotools-dev. 449s Preparing to unpack .../003-autotools-dev_20220109.1_all.deb ... 449s Unpacking autotools-dev (20220109.1) ... 449s Selecting previously unselected package automake. 449s Preparing to unpack .../004-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 449s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 449s Selecting previously unselected package gcc-12-base:arm64. 449s Preparing to unpack .../005-gcc-12-base_12.3.0-15ubuntu1_arm64.deb ... 449s Unpacking gcc-12-base:arm64 (12.3.0-15ubuntu1) ... 449s Selecting previously unselected package libisl23:arm64. 449s Preparing to unpack .../006-libisl23_0.26-3_arm64.deb ... 449s Unpacking libisl23:arm64 (0.26-3) ... 449s Selecting previously unselected package libmpc3:arm64. 449s Preparing to unpack .../007-libmpc3_1.3.1-1_arm64.deb ... 449s Unpacking libmpc3:arm64 (1.3.1-1) ... 449s Selecting previously unselected package cpp-12. 449s Preparing to unpack .../008-cpp-12_12.3.0-15ubuntu1_arm64.deb ... 449s Unpacking cpp-12 (12.3.0-15ubuntu1) ... 450s Selecting previously unselected package fonts-dejavu-mono. 450s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ... 450s Unpacking fonts-dejavu-mono (2.37-8) ... 450s Selecting previously unselected package fonts-dejavu-core. 450s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ... 450s Unpacking fonts-dejavu-core (2.37-8) ... 450s Selecting previously unselected package fontconfig-config. 450s Preparing to unpack .../011-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 450s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 450s Selecting previously unselected package libcc1-0:arm64. 450s Preparing to unpack .../012-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 450s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 450s Selecting previously unselected package libgomp1:arm64. 450s Preparing to unpack .../013-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 450s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 450s Selecting previously unselected package libitm1:arm64. 450s Preparing to unpack .../014-libitm1_14-20240303-1ubuntu1_arm64.deb ... 450s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 450s Selecting previously unselected package libatomic1:arm64. 450s Preparing to unpack .../015-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 450s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 450s Selecting previously unselected package libasan8:arm64. 450s Preparing to unpack .../016-libasan8_14-20240303-1ubuntu1_arm64.deb ... 450s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package liblsan0:arm64. 451s Preparing to unpack .../017-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package libtsan2:arm64. 451s Preparing to unpack .../018-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package libubsan1:arm64. 451s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package libhwasan0:arm64. 451s Preparing to unpack .../020-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package libgcc-12-dev:arm64. 451s Preparing to unpack .../021-libgcc-12-dev_12.3.0-15ubuntu1_arm64.deb ... 451s Unpacking libgcc-12-dev:arm64 (12.3.0-15ubuntu1) ... 451s Selecting previously unselected package gcc-12. 451s Preparing to unpack .../022-gcc-12_12.3.0-15ubuntu1_arm64.deb ... 451s Unpacking gcc-12 (12.3.0-15ubuntu1) ... 452s Selecting previously unselected package libgfortran5:arm64. 452s Preparing to unpack .../023-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 452s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 452s Selecting previously unselected package libgfortran-12-dev:arm64. 452s Preparing to unpack .../024-libgfortran-12-dev_12.3.0-15ubuntu1_arm64.deb ... 452s Unpacking libgfortran-12-dev:arm64 (12.3.0-15ubuntu1) ... 452s Selecting previously unselected package libc-dev-bin. 452s Preparing to unpack .../025-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 452s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 452s Selecting previously unselected package linux-libc-dev:arm64. 452s Preparing to unpack .../026-linux-libc-dev_6.8.0-11.11_arm64.deb ... 452s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 452s Selecting previously unselected package libcrypt-dev:arm64. 452s Preparing to unpack .../027-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 452s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 452s Selecting previously unselected package libtirpc-dev:arm64. 452s Preparing to unpack .../028-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 452s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 452s Selecting previously unselected package libnsl-dev:arm64. 452s Preparing to unpack .../029-libnsl-dev_1.3.0-3_arm64.deb ... 452s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 452s Selecting previously unselected package rpcsvc-proto. 452s Preparing to unpack .../030-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 452s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 452s Selecting previously unselected package libc6-dev:arm64. 452s Preparing to unpack .../031-libc6-dev_2.39-0ubuntu2_arm64.deb ... 452s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 452s Selecting previously unselected package gfortran-12. 452s Preparing to unpack .../032-gfortran-12_12.3.0-15ubuntu1_arm64.deb ... 452s Unpacking gfortran-12 (12.3.0-15ubuntu1) ... 452s Selecting previously unselected package libaec0:arm64. 452s Preparing to unpack .../033-libaec0_1.1.2-1_arm64.deb ... 452s Unpacking libaec0:arm64 (1.1.2-1) ... 453s Selecting previously unselected package libllvm17:arm64. 453s Preparing to unpack .../034-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 453s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 453s Selecting previously unselected package libamd-comgr2:arm64. 453s Preparing to unpack .../035-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 453s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 453s Selecting previously unselected package libdrm-amdgpu1:arm64. 454s Preparing to unpack .../036-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 454s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 454s Selecting previously unselected package libhsakmt1:arm64. 454s Preparing to unpack .../037-libhsakmt1_5.7.0-1_arm64.deb ... 454s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 454s Selecting previously unselected package libhsa-runtime64-1. 454s Preparing to unpack .../038-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 454s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 454s Selecting previously unselected package libamdhip64-5. 454s Preparing to unpack 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(1.15-1) ... 454s Selecting previously unselected package libxrender1:arm64. 454s Preparing to unpack .../045-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 454s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 454s Selecting previously unselected package libcairo2:arm64. 454s Preparing to unpack .../046-libcairo2_1.18.0-1_arm64.deb ... 454s Unpacking libcairo2:arm64 (1.18.0-1) ... 454s Selecting previously unselected package libdeflate0:arm64. 454s Preparing to unpack .../047-libdeflate0_1.19-1_arm64.deb ... 454s Unpacking libdeflate0:arm64 (1.19-1) ... 454s Selecting previously unselected package libdouble-conversion3:arm64. 454s Preparing to unpack .../048-libdouble-conversion3_3.3.0-1_arm64.deb ... 454s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 454s Selecting previously unselected package libdrm-nouveau2:arm64. 454s Preparing to unpack .../049-libdrm-nouveau2_2.4.120-2_arm64.deb ... 454s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 454s Selecting previously unselected package libdrm-radeon1:arm64. 454s Preparing to unpack .../050-libdrm-radeon1_2.4.120-2_arm64.deb ... 454s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 454s Selecting previously unselected package libevent-2.1-7:arm64. 454s Preparing to unpack .../051-libevent-2.1-7_2.1.12-stable-9_arm64.deb ... 454s Unpacking libevent-2.1-7:arm64 (2.1.12-stable-9) ... 454s Selecting previously unselected package libevent-extra-2.1-7:arm64. 454s Preparing to unpack .../052-libevent-extra-2.1-7_2.1.12-stable-9_arm64.deb ... 454s Unpacking libevent-extra-2.1-7:arm64 (2.1.12-stable-9) ... 454s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 454s Preparing to unpack .../053-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 454s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 454s Selecting previously unselected package libevent-openssl-2.1-7:arm64. 454s Preparing to unpack .../054-libevent-openssl-2.1-7_2.1.12-stable-9_arm64.deb ... 454s Unpacking libevent-openssl-2.1-7:arm64 (2.1.12-stable-9) ... 454s Selecting previously unselected package libevent-dev. 454s Preparing to unpack .../055-libevent-dev_2.1.12-stable-9_arm64.deb ... 454s Unpacking libevent-dev (2.1.12-stable-9) ... 454s Selecting previously unselected package librdmacm1t64:arm64. 454s Preparing to unpack .../056-librdmacm1t64_50.0-2_arm64.deb ... 454s Unpacking librdmacm1t64:arm64 (50.0-2) ... 454s Selecting previously unselected package libfabric1:arm64. 454s Preparing to unpack .../057-libfabric1_1.17.0-3_arm64.deb ... 454s Unpacking libfabric1:arm64 (1.17.0-3) ... 454s Selecting previously unselected package libfftw3-double3:arm64. 454s Preparing to unpack .../058-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ... 454s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 454s Selecting previously unselected package libvulkan1:arm64. 454s Preparing to unpack .../059-libvulkan1_1.3.275.0-1_arm64.deb ... 454s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 454s Selecting previously unselected package libglapi-mesa:arm64. 454s Preparing to unpack .../060-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 454s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 455s Selecting previously unselected package libxcb-dri3-0:arm64. 455s Preparing to unpack .../061-libxcb-dri3-0_1.15-1_arm64.deb ... 455s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 455s Selecting previously unselected package libgl1-mesa-dri:arm64. 455s Preparing to unpack .../062-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 455s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 455s Selecting previously unselected package libglvnd0:arm64. 455s Preparing to unpack .../063-libglvnd0_1.7.0-1_arm64.deb ... 455s Unpacking libglvnd0:arm64 (1.7.0-1) ... 455s Selecting previously unselected package libx11-xcb1:arm64. 455s Preparing to unpack .../064-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 455s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 455s Selecting previously unselected package libxcb-dri2-0:arm64. 455s Preparing to unpack .../065-libxcb-dri2-0_1.15-1_arm64.deb ... 455s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 455s Selecting previously unselected package libxcb-glx0:arm64. 455s Preparing to unpack .../066-libxcb-glx0_1.15-1_arm64.deb ... 455s Unpacking libxcb-glx0:arm64 (1.15-1) ... 455s Selecting previously unselected package libxcb-present0:arm64. 455s Preparing to unpack .../067-libxcb-present0_1.15-1_arm64.deb ... 455s Unpacking libxcb-present0:arm64 (1.15-1) ... 455s Selecting previously unselected package libxcb-randr0:arm64. 455s Preparing to unpack .../068-libxcb-randr0_1.15-1_arm64.deb ... 455s Unpacking libxcb-randr0:arm64 (1.15-1) ... 455s Selecting previously unselected package libxcb-sync1:arm64. 455s Preparing to unpack .../069-libxcb-sync1_1.15-1_arm64.deb ... 455s Unpacking libxcb-sync1:arm64 (1.15-1) ... 455s Selecting previously unselected package libxcb-xfixes0:arm64. 455s Preparing to unpack .../070-libxcb-xfixes0_1.15-1_arm64.deb ... 455s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 455s Selecting previously unselected package libxfixes3:arm64. 455s Preparing to unpack .../071-libxfixes3_1%3a6.0.0-2_arm64.deb ... 455s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 455s Selecting previously unselected package libxshmfence1:arm64. 455s Preparing to unpack .../072-libxshmfence1_1.3-1build4_arm64.deb ... 455s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 455s Selecting previously unselected package libxxf86vm1:arm64. 455s Preparing to unpack .../073-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 455s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 455s Selecting previously unselected package libglx-mesa0:arm64. 455s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 455s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 455s Selecting previously unselected package libglx0:arm64. 455s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 455s Unpacking libglx0:arm64 (1.7.0-1) ... 455s Selecting previously unselected package libgl1:arm64. 455s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 455s Unpacking libgl1:arm64 (1.7.0-1) ... 455s Selecting previously unselected package libgl2ps1.4. 455s Preparing to unpack .../077-libgl2ps1.4_1.4.2+dfsg1-2_arm64.deb ... 455s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 455s Selecting previously unselected package libglew2.2:arm64. 455s Preparing to unpack .../078-libglew2.2_2.2.0-4_arm64.deb ... 455s Unpacking libglew2.2:arm64 (2.2.0-4) ... 455s Selecting previously unselected package libsz2:arm64. 455s Preparing to unpack .../079-libsz2_1.1.2-1_arm64.deb ... 455s Unpacking libsz2:arm64 (1.1.2-1) ... 455s Selecting previously unselected package libhdf5-103-1t64:arm64. 455s Preparing to unpack .../080-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 455s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 455s Selecting previously unselected package libhdf5-hl-100t64:arm64. 455s Preparing to unpack .../081-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 455s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 455s Selecting previously unselected package libhwloc15:arm64. 455s Preparing to unpack .../082-libhwloc15_2.10.0-1_arm64.deb ... 455s Unpacking libhwloc15:arm64 (2.10.0-1) ... 455s Selecting previously unselected package libjpeg-turbo8:arm64. 455s Preparing to unpack .../083-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 455s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 455s Selecting previously unselected package libjpeg8:arm64. 455s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_arm64.deb ... 455s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 455s Selecting previously unselected package libjs-jquery. 456s Preparing to unpack .../085-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 456s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 456s Selecting previously unselected package libjs-jquery-ui. 456s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 456s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 456s Selecting previously unselected package libjsoncpp25:arm64. 456s Preparing to unpack .../087-libjsoncpp25_1.9.5-6_arm64.deb ... 456s Unpacking libjsoncpp25:arm64 (1.9.5-6) ... 456s Selecting previously unselected package libkim-api2:arm64. 456s Preparing to unpack .../088-libkim-api2_2.3.0-1_arm64.deb ... 456s Unpacking libkim-api2:arm64 (2.3.0-1) ... 456s Selecting previously unselected package liblapack3:arm64. 456s Preparing to unpack .../089-liblapack3_3.12.0-3_arm64.deb ... 456s Unpacking liblapack3:arm64 (3.12.0-3) ... 456s Selecting previously unselected package libnetcdf19t64:arm64. 456s Preparing to unpack .../090-libnetcdf19t64_1%3a4.9.2-5ubuntu3_arm64.deb ... 456s Unpacking libnetcdf19t64:arm64 (1:4.9.2-5ubuntu3) ... 456s Selecting previously unselected package libmunge2:arm64. 456s Preparing to unpack .../091-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 456s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 456s Selecting previously unselected package libpciaccess0:arm64. 456s Preparing to unpack .../092-libpciaccess0_0.17-3_arm64.deb ... 456s Unpacking libpciaccess0:arm64 (0.17-3) ... 456s Selecting previously unselected package libxnvctrl0:arm64. 456s Preparing to unpack .../093-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 456s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 456s Selecting previously unselected package ocl-icd-libopencl1:arm64. 456s Preparing to unpack .../094-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 456s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 456s Selecting previously unselected package libhwloc-plugins:arm64. 456s Preparing to unpack .../095-libhwloc-plugins_2.10.0-1_arm64.deb ... 456s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 456s Selecting previously unselected package libpmix2t64:arm64. 456s Preparing to unpack .../096-libpmix2t64_5.0.1-4.1_arm64.deb ... 456s Unpacking libpmix2t64:arm64 (5.0.1-4.1) ... 456s Selecting previously unselected package libucx0:arm64. 456s Preparing to unpack .../097-libucx0_1.16.0+ds-4_arm64.deb ... 456s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 456s Selecting previously unselected package libopenmpi3t64:arm64. 456s Preparing to unpack .../098-libopenmpi3t64_4.1.6-6ubuntu1_arm64.deb ... 456s Unpacking libopenmpi3t64:arm64 (4.1.6-6ubuntu1) ... 456s Selecting previously unselected package libpnetcdf0d:arm64. 456s Preparing to unpack .../099-libpnetcdf0d_1.12.3-2_arm64.deb ... 456s Unpacking libpnetcdf0d:arm64 (1.12.3-2) ... 456s Selecting previously unselected package libpython3.12t64:arm64. 457s Preparing to unpack .../100-libpython3.12t64_3.12.2-4build2_arm64.deb ... 457s Unpacking libpython3.12t64:arm64 (3.12.2-4build2) ... 457s Selecting previously unselected package libvoro++1. 457s Preparing to unpack .../101-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 457s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 457s Selecting previously unselected package libogg0:arm64. 457s Preparing to unpack .../102-libogg0_1.3.5-3_arm64.deb ... 457s Unpacking libogg0:arm64 (1.3.5-3) ... 457s Selecting previously unselected package libopengl0:arm64. 457s Preparing to unpack .../103-libopengl0_1.7.0-1_arm64.deb ... 457s Unpacking libopengl0:arm64 (1.7.0-1) ... 457s Selecting previously unselected package proj-data. 457s Preparing to unpack .../104-proj-data_9.3.1-1_all.deb ... 457s Unpacking proj-data (9.3.1-1) ... 457s Selecting previously unselected package libjbig0:arm64. 457s Preparing to unpack .../105-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 457s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 457s Selecting previously unselected package liblerc4:arm64. 457s Preparing to unpack .../106-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 457s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 457s Selecting previously unselected package libsharpyuv0:arm64. 457s Preparing to unpack .../107-libsharpyuv0_1.3.2-0.4_arm64.deb ... 457s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 457s Selecting previously unselected package libwebp7:arm64. 457s Preparing to unpack .../108-libwebp7_1.3.2-0.4_arm64.deb ... 457s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 457s Selecting previously unselected package libtiff6:arm64. 457s Preparing to unpack .../109-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 457s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 457s Selecting previously unselected package libproj25:arm64. 458s Preparing to unpack .../110-libproj25_9.3.1-1_arm64.deb ... 458s Unpacking libproj25:arm64 (9.3.1-1) ... 458s Selecting previously unselected package libtbbmalloc2:arm64. 458s Preparing to unpack .../111-libtbbmalloc2_2021.11.0-2ubuntu2_arm64.deb ... 458s Unpacking libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ... 458s Selecting previously unselected package libtbbbind-2-5:arm64. 458s Preparing to unpack .../112-libtbbbind-2-5_2021.11.0-2ubuntu2_arm64.deb ... 458s Unpacking libtbbbind-2-5:arm64 (2021.11.0-2ubuntu2) ... 458s Selecting previously unselected package libtbb12:arm64. 458s Preparing to unpack .../113-libtbb12_2021.11.0-2ubuntu2_arm64.deb ... 458s Unpacking libtbb12:arm64 (2021.11.0-2ubuntu2) ... 458s Selecting previously unselected package libtcl8.6:arm64. 458s Preparing to unpack .../114-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 458s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 458s Selecting previously unselected package libtheora0:arm64. 458s Preparing to unpack .../115-libtheora0_1.1.1+dfsg.1-16.1_arm64.deb ... 458s Unpacking libtheora0:arm64 (1.1.1+dfsg.1-16.1) ... 458s Selecting previously unselected package libxft2:arm64. 458s Preparing to unpack .../116-libxft2_2.3.6-1_arm64.deb ... 458s Unpacking libxft2:arm64 (2.3.6-1) ... 458s Selecting previously unselected package x11-common. 458s Preparing to unpack .../117-x11-common_1%3a7.7+23ubuntu2_all.deb ... 458s Unpacking x11-common (1:7.7+23ubuntu2) ... 458s Selecting previously unselected package libxss1:arm64. 458s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build2_arm64.deb ... 458s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 458s Selecting previously unselected package libtk8.6:arm64. 458s Preparing to unpack .../119-libtk8.6_8.6.13-2_arm64.deb ... 458s Unpacking libtk8.6:arm64 (8.6.13-2) ... 458s Selecting previously unselected package libvtk9.1t64:arm64. 458s Preparing to unpack .../120-libvtk9.1t64_9.1.0+really9.1.0+dfsg2-7.1build2_arm64.deb ... 458s Unpacking libvtk9.1t64:arm64 (9.1.0+really9.1.0+dfsg2-7.1build2) ... 459s Selecting previously unselected package liblammps0t64:arm64. 459s Preparing to unpack .../121-liblammps0t64_20240207+dfsg-1.1build2_arm64.deb ... 459s Unpacking liblammps0t64:arm64 (20240207+dfsg-1.1build2) ... 459s Selecting previously unselected package openmpi-common. 459s Preparing to unpack .../122-openmpi-common_4.1.6-6ubuntu1_all.deb ... 459s Unpacking openmpi-common (4.1.6-6ubuntu1) ... 459s Selecting previously unselected package libnl-3-dev:arm64. 459s Preparing to unpack .../123-libnl-3-dev_3.7.0-0.3_arm64.deb ... 459s Unpacking libnl-3-dev:arm64 (3.7.0-0.3) ... 459s Selecting previously unselected package libnl-route-3-dev:arm64. 459s Preparing to unpack .../124-libnl-route-3-dev_3.7.0-0.3_arm64.deb ... 459s Unpacking libnl-route-3-dev:arm64 (3.7.0-0.3) ... 459s Selecting previously unselected package libibverbs-dev:arm64. 459s Preparing to unpack .../125-libibverbs-dev_50.0-2_arm64.deb ... 459s Unpacking libibverbs-dev:arm64 (50.0-2) ... 459s Selecting previously unselected package libnuma-dev:arm64. 459s Preparing to unpack .../126-libnuma-dev_2.0.18-1_arm64.deb ... 459s Unpacking libnuma-dev:arm64 (2.0.18-1) ... 459s Selecting previously unselected package libltdl7:arm64. 459s Preparing to unpack .../127-libltdl7_2.4.7-7_arm64.deb ... 459s Unpacking libltdl7:arm64 (2.4.7-7) ... 459s Selecting previously unselected package libltdl-dev:arm64. 459s Preparing to unpack .../128-libltdl-dev_2.4.7-7_arm64.deb ... 459s Unpacking libltdl-dev:arm64 (2.4.7-7) ... 459s Selecting previously unselected package libhwloc-dev:arm64. 459s Preparing to unpack .../129-libhwloc-dev_2.10.0-1_arm64.deb ... 459s Unpacking libhwloc-dev:arm64 (2.10.0-1) ... 459s Selecting previously unselected package zlib1g-dev:arm64. 459s Preparing to unpack .../130-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 459s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 459s Selecting previously unselected package libpmix-dev:arm64. 459s Preparing to unpack .../131-libpmix-dev_5.0.1-4.1_arm64.deb ... 459s Unpacking libpmix-dev:arm64 (5.0.1-4.1) ... 459s Selecting previously unselected package openmpi-bin. 459s Preparing to unpack .../132-openmpi-bin_4.1.6-6ubuntu1_arm64.deb ... 459s Unpacking openmpi-bin (4.1.6-6ubuntu1) ... 459s Selecting previously unselected package libopenmpi-dev:arm64. 459s Preparing to unpack .../133-libopenmpi-dev_4.1.6-6ubuntu1_arm64.deb ... 459s Unpacking libopenmpi-dev:arm64 (4.1.6-6ubuntu1) ... 460s Selecting previously unselected package mpi-default-dev. 460s Preparing to unpack .../134-mpi-default-dev_1.15_arm64.deb ... 460s Unpacking mpi-default-dev (1.15) ... 460s Selecting previously unselected package liblammps-dev. 460s Preparing to unpack .../135-liblammps-dev_20240207+dfsg-1.1build2_arm64.deb ... 460s Unpacking liblammps-dev (20240207+dfsg-1.1build2) ... 460s Selecting previously unselected package mpi-default-bin. 460s Preparing to unpack .../136-mpi-default-bin_1.15_arm64.deb ... 460s Unpacking mpi-default-bin (1.15) ... 460s Selecting previously unselected package python3-lammps. 460s Preparing to unpack .../137-python3-lammps_20240207+dfsg-1.1build2_arm64.deb ... 460s Unpacking python3-lammps (20240207+dfsg-1.1build2) ... 460s Selecting previously unselected package autopkgtest-satdep. 460s Preparing to unpack .../138-7-autopkgtest-satdep.deb ... 460s Unpacking autopkgtest-satdep (0) ... 460s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 460s Setting up libtbbmalloc2:arm64 (2021.11.0-2ubuntu2) ... 460s 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installed.) 470s Removing autopkgtest-satdep (0) ... 494s autopkgtest [14:59:58]: test command1: cd python/examples; python3 demo.py 494s autopkgtest [14:59:58]: test command1: [----------------------- 495s LAMMPS (7 Feb 2024 - Update 1) 496s 496s Python output: 496s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 496s Temperature from compute = 0.7683848148006238 496s Energy from equal-style variable = -5.774392400140566 496s Velocity component from atom-style variable = -0.1669643026996425 496s Volume from get_thermo = 4738.213693437576 496s Natoms from get_natoms = 4000 496s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 496s Changed x[0][0] via scatter_atoms = 17.651271530416228 496s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 496s using 1 OpenMP thread(s) per MPI task 496s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 496s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 496s 1 by 1 by 1 MPI processor grid 496s Created 4000 atoms 496s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 496s create_atoms CPU = 0.001 seconds 496s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 496s Neighbor list info ... 496s update: every = 20 steps, delay = 0 steps, check = no 496s max neighbors/atom: 2000, page size: 100000 496s master list distance cutoff = 2.8 496s ghost atom cutoff = 2.8 496s binsize = 1.4, bins = 12 12 12 496s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 496s (1) pair lj/cut, perpetual 496s attributes: half, newton on 496s pair build: half/bin/atomonly/newton 496s stencil: half/bin/3d 496s bin: standard 496s Setting up Verlet run ... 496s Unit style : lj 496s Current step : 0 496s Time step : 0.005 496s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 496s Step Temp E_pair E_mol TotEng Press 496s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 496s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 496s Loop time of 0.223543 on 1 procs for 100 steps with 4000 atoms 496s 496s Performance: 193251.227 tau/day, 447.341 timesteps/s, 1.789 Matom-step/s 496s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 496s 496s MPI task timing breakdown: 496s Section | min time | avg time | max time |%varavg| %total 496s --------------------------------------------------------------- 496s Pair | 0.18862 | 0.18862 | 0.18862 | 0.0 | 84.38 496s Neigh | 0.026409 | 0.026409 | 0.026409 | 0.0 | 11.81 496s Comm | 0.004184 | 0.004184 | 0.004184 | 0.0 | 1.87 496s Output | 0.00011456 | 0.00011456 | 0.00011456 | 0.0 | 0.05 496s Modify | 0.0037126 | 0.0037126 | 0.0037126 | 0.0 | 1.66 496s Other | | 0.0005063 | | | 0.23 496s 496s Nlocal: 4000 ave 4000 max 4000 min 496s Histogram: 1 0 0 0 0 0 0 0 0 0 496s Nghost: 5758 ave 5758 max 5758 min 496s Histogram: 1 0 0 0 0 0 0 0 0 0 496s Neighs: 150488 ave 150488 max 150488 min 496s Histogram: 1 0 0 0 0 0 0 0 0 0 496s 496s Total # of neighbors = 150488 496s Ave neighs/atom = 37.622 496s Neighbor list builds = 5 496s Dangerous builds not checked 496s Total wall time: 0:00:00 496s autopkgtest [15:00:00]: test command1: -----------------------] 497s command1 PASS 497s autopkgtest [15:00:01]: test command1: - - - - - - - - - - results - - - - - - - - - - 497s autopkgtest [15:00:01]: @@@@@@@@@@@@@@@@@@@@ summary 497s crack PASS 497s dipole PASS 497s ellipse PASS 497s flow PASS 497s friction PASS 497s hugo PASS 497s command1 PASS 509s Creating nova instance adt-noble-arm64-lammps-20240316-145144-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)... 509s Creating nova instance adt-noble-arm64-lammps-20240316-145144-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...