0s autopkgtest [11:28:14]: starting date and time: 2024-03-19 11:28:14+0000 0s autopkgtest [11:28:14]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [11:28:14]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.knotnqjm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3.12,src:db5.3,src:openssl,src:readline --apt-upgrade kmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3.12/3.12.2-4build3 db5.3/5.3.28+dfsg2-5build1 openssl/3.0.13-0ubuntu2 readline/8.2-3.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-14.secgroup --name adt-noble-arm64-kmer-20240319-112813-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 140s autopkgtest [11:30:34]: testbed dpkg architecture: arm64 140s autopkgtest [11:30:34]: testbed apt version: 2.7.12 140s autopkgtest [11:30:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 141s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 142s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.7 kB] 142s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3768 kB] 142s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 142s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [486 kB] 142s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [659 kB] 143s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 143s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 143s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 143s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4142 kB] 143s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 143s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [56.7 kB] 143s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 149s Fetched 9334 kB in 3s (3443 kB/s) 149s Reading package lists... 153s Reading package lists... 154s Building dependency tree... 154s Reading state information... 155s Calculating upgrade... 156s The following packages will be REMOVED: 156s libreadline8 libssl3 156s The following NEW packages will be installed: 156s libreadline8t64 libssl3t64 156s The following packages have been kept back: 156s libpython3.12-minimal libpython3.12-stdlib python3.12 python3.12-minimal 156s The following packages will be upgraded: 156s openssl readline-common 156s 2 upgraded, 2 newly installed, 2 to remove and 4 not upgraded. 156s Need to get 2987 kB of archives. 156s After this operation, 207 kB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 156s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 156s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 157s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 158s Fetched 2987 kB in 1s (2846 kB/s) 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 158s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 158s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 158s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 158s parted depends on libreadline8 (>= 6.0). 158s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 158s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 158s gpgsm depends on libreadline8 (>= 6.0). 158s gpgconf depends on libreadline8 (>= 6.0). 158s gpg depends on libreadline8 (>= 6.0). 158s gawk depends on libreadline8 (>= 6.0). 158s fdisk depends on libreadline8 (>= 6.0). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 158s Removing libreadline8:arm64 (8.2-3) ... 158s Selecting previously unselected package libreadline8t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75838 files and directories currently installed.) 159s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 159s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 159s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 159s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 159s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 159s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 159s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 159s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 159s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 159s wget depends on libssl3 (>= 3.0.0). 159s u-boot-tools depends on libssl3 (>= 3.0.0). 159s tnftp depends on libssl3 (>= 3.0.0). 159s tcpdump depends on libssl3 (>= 3.0.0). 159s systemd-resolved depends on libssl3 (>= 3.0.0). 159s systemd depends on libssl3 (>= 3.0.0). 159s sudo depends on libssl3 (>= 3.0.0). 159s sbsigntool depends on libssl3 (>= 3.0.0). 159s rsync depends on libssl3 (>= 3.0.0). 159s python3-cryptography depends on libssl3 (>= 3.0.0). 159s openssh-server depends on libssl3 (>= 3.0.10). 159s openssh-client depends on libssl3 (>= 3.0.10). 159s mtd-utils depends on libssl3 (>= 3.0.0). 159s mokutil depends on libssl3 (>= 3.0.0). 159s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 159s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 159s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 159s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 159s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 159s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 159s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 159s libnvme1 depends on libssl3 (>= 3.0.0). 159s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 159s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 159s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 159s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 159s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 159s kmod depends on libssl3 (>= 3.0.0). 159s dhcpcd-base depends on libssl3 (>= 3.0.0). 159s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 159s 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 159s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 159s Selecting previously unselected package libssl3t64:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75847 files and directories currently installed.) 159s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 159s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 159s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 159s Setting up openssl (3.0.13-0ubuntu2) ... 159s Setting up readline-common (8.2-3.1) ... 159s Setting up libreadline8t64:arm64 (8.2-3.1) ... 159s Processing triggers for libc-bin (2.39-0ubuntu2) ... 159s Processing triggers for man-db (2.12.0-3) ... 160s Processing triggers for install-info (7.1-3) ... 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 163s 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded. 163s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 163s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 164s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 164s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 167s Reading package lists... 167s Reading package lists... 168s Building dependency tree... 168s Reading state information... 169s Calculating upgrade... 170s The following packages have been kept back: 170s libpython3.12-minimal libpython3.12-stdlib python3.12 python3.12-minimal 170s 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded. 170s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded. 175s autopkgtest [11:31:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 175s autopkgtest [11:31:09]: @@@@@@@@@@@@@@@@@@@@ apt-source kmer 183s Get:1 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (dsc) [2385 B] 183s Get:2 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (tar) [1252 kB] 183s Get:3 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (diff) [2380 kB] 183s gpgv: Signature made Fri Jan 19 19:49:17 2024 UTC 183s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 183s gpgv: Can't check signature: No public key 183s dpkg-source: warning: cannot verify inline signature for ./kmer_0~20150903+r2013-8build4.dsc: no acceptable signature found 183s autopkgtest [11:31:17]: testing package kmer version 0~20150903+r2013-8build4 184s autopkgtest [11:31:18]: build not needed 184s autopkgtest [11:31:18]: test sim4db-unit-test: preparing testbed 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 187s Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 189s The following additional packages will be installed: 189s adwaita-icon-theme aglfn at-spi2-common atac dconf-gsettings-backend 189s dconf-service fontconfig fontconfig-config fonts-dejavu-core 189s fonts-dejavu-mono gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache 189s hicolor-icon-theme humanity-icon-theme kmer kmer-examples leaff 189s libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3 189s libavahi-common-data libavahi-common3 libcairo-gobject2 libcairo2 libcolord2 189s libcups2 libdatrie1 libdconf1 libdeflate0 libdouble-conversion3 189s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 189s libfile-which-perl libfontconfig1 libgbm1 libgd3 libgdk-pixbuf-2.0-0 189s libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 189s libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0 libgtk-3-common libharfbuzz0b 189s libice6 libinput-bin libinput10 libjbig0 libjpeg-turbo8 libjpeg8 libkmer-dev 189s liblcms2-2 liblerc4 libllvm17 liblua5.4-0 libmd4c0 libmeryl-dev libmtdev1 189s libnotify4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 189s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libqt5core5a libqt5dbus5 189s libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 189s libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libvulkan1 189s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 189s libwayland-egl1 libwayland-server0 libwebp7 libwxbase3.2-1 libwxgtk3.2-1 189s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 189s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 189s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 189s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 189s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 189s libxkbcommon-x11-0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxtst6 189s libxxf86vm1 meryl sim4db ubuntu-mono x11-common 189s Suggested packages: 189s gnuplot-doc colord cups-common libgd-tools gvfs liblcms2-utils 189s notification-daemon qgnomeplatform-qt5 qt5-image-formats-plugins 189s libwacom-bin gridengine-client 189s Recommended packages: 189s librsvg2-common at-spi2-core libgdk-pixbuf2.0-bin libgl1-amber-dri 189s libgtk-3-bin qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 189s mesa-vulkan-drivers | vulkan-icd 189s The following NEW packages will be installed: 189s adwaita-icon-theme aglfn at-spi2-common atac autopkgtest-satdep 189s dconf-gsettings-backend dconf-service fontconfig fontconfig-config 189s fonts-dejavu-core fonts-dejavu-mono gnuplot gnuplot-data gnuplot-qt 189s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme kmer 189s kmer-examples leaff libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 189s libavahi-client3 libavahi-common-data libavahi-common3 libcairo-gobject2 189s libcairo2 libcolord2 libcups2 libdatrie1 libdconf1 libdeflate0 189s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 189s libegl-mesa0 libegl1 libepoxy0 libfile-which-perl libfontconfig1 libgbm1 189s libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri 189s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0 189s libgtk-3-common libharfbuzz0b libice6 libinput-bin libinput10 libjbig0 189s libjpeg-turbo8 libjpeg8 libkmer-dev liblcms2-2 liblerc4 libllvm17 189s liblua5.4-0 libmd4c0 libmeryl-dev libmtdev1 libnotify4 libpango-1.0-0 189s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-16-0 libpcre2-32-0 189s libpixman-1-0 libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 189s libqt5printsupport5 libqt5svg5 libqt5widgets5 libsharpyuv0 libsm6 189s libthai-data libthai0 libtiff6 libvulkan1 libwacom-common libwacom9 189s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 189s libwebp7 libwxbase3.2-1 libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 189s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 189s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 189s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 189s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 libxcursor1 189s libxdamage1 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxpm4 189s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 meryl sim4db 189s ubuntu-mono x11-common 189s 0 upgraded, 135 newly installed, 0 to remove and 4 not upgraded. 189s Need to get 67.5 MB/67.5 MB of archives. 189s After this operation, 303 MB of additional disk space will be used. 189s Get:1 /tmp/autopkgtest.75w1B8/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 189s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 189s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 189s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 189s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 189s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 189s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 189s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 189s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 190s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 190s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 190s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 190s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 190s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 190s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 190s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 190s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 190s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-which-perl all 1.27-2 [12.5 kB] 190s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 leaff arm64 0~20150903+r2013-8build4 [66.7 kB] 190s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 meryl arm64 0~20150903+r2013-8build4 [214 kB] 190s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 190s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot-data all 5.4.4+dfsg1-2build1 [74.6 kB] 190s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 190s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 190s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 190s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 190s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 190s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 190s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 190s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 190s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 190s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 190s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libgd3 arm64 2.3.3-9ubuntu1 [119 kB] 190s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 190s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 190s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 190s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 190s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 190s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 190s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 190s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 190s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 190s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 190s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 190s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 190s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5core5a arm64 5.15.12+dfsg-3ubuntu1 [1969 kB] 190s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 190s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-server0 arm64 1.22.0-2.1 [34.0 kB] 190s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 190s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgbm1 arm64 24.0.1-1ubuntu1 [43.0 kB] 190s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 190s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-client0 arm64 1.22.0-2.1 [25.6 kB] 190s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 190s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 190s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 190s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 190s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 190s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 190s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 190s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libegl-mesa0 arm64 24.0.1-1ubuntu1 [116 kB] 190s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libegl1 arm64 1.7.0-1 [29.2 kB] 190s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 190s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 190s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 190s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 190s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 190s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 190s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 190s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 191s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 192s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 192s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 192s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 192s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 192s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 192s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libmtdev1 arm64 1.1.6-1build4 [14.4 kB] 192s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom-common all 2.10.0-1 [63.3 kB] 192s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom9 arm64 2.10.0-1 [23.7 kB] 192s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libinput-bin arm64 1.25.0-1 [21.9 kB] 192s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libinput10 arm64 1.25.0-1 [129 kB] 192s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libmd4c0 arm64 0.4.8-1 [41.2 kB] 192s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5dbus5 arm64 5.15.12+dfsg-3ubuntu1 [224 kB] 192s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5network5 arm64 5.15.12+dfsg-3ubuntu1 [741 kB] 192s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 192s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-icccm4 arm64 0.4.1-1.1build2 [11.0 kB] 192s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-util1 arm64 0.4.0-1build2 [11.2 kB] 192s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-image0 arm64 0.4.0-2 [11.1 kB] 192s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-keysyms1 arm64 0.4.0-1build3 [8606 B] 192s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render-util0 arm64 0.3.9-1build3 [10.2 kB] 192s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shape0 arm64 1.15-1 [6106 B] 192s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinerama0 arm64 1.15-1 [5434 B] 192s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinput0 arm64 1.15-1 [33.5 kB] 192s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xkb1 arm64 1.15-1 [31.7 kB] 192s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1 [13.6 kB] 192s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5gui5 arm64 5.15.12+dfsg-3ubuntu1 [3616 kB] 192s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 192s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 192s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 192s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 192s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5widgets5 arm64 5.15.12+dfsg-3ubuntu1 [2550 kB] 192s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5printsupport5 arm64 5.15.12+dfsg-3ubuntu1 [209 kB] 192s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5svg5 arm64 5.15.12-1 [177 kB] 192s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 192s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxbase3.2-1 arm64 3.2.4+dfsg-3 [860 kB] 193s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 193s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 193s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libatspi2.0-0 arm64 2.50.0-1 [78.5 kB] 193s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libatk-bridge2.0-0 arm64 2.50.0-1 [65.0 kB] 193s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo-gobject2 arm64 1.18.0-1 [127 kB] 193s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 193s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libcolord2 arm64 1.4.7-1 [148 kB] 193s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libepoxy0 arm64 1.5.10-1 [247 kB] 193s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-cursor0 arm64 1.22.0-2.1 [10.2 kB] 193s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-egl1 arm64 1.22.0-2.1 [5498 B] 193s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 193s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 193s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 193s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 193s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 193s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libdconf1 arm64 0.40.0-4 [39.2 kB] 193s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-service arm64 0.40.0-4 [26.1 kB] 193s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-gsettings-backend arm64 0.40.0-4 [21.6 kB] 193s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB] 193s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-0 arm64 3.24.40-2ubuntu1 [2867 kB] 193s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libnotify4 arm64 0.8.3-1 [25.3 kB] 193s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 193s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxgtk3.2-1 arm64 3.2.4+dfsg-3 [4341 kB] 193s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot-qt arm64 5.4.4+dfsg1-2build1 [1109 kB] 193s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot all 5.4.4+dfsg1-2build1 [3584 B] 193s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 atac arm64 0~20150903+r2013-8build4 [358 kB] 193s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 sim4db arm64 0~20150903+r2013-8build4 [531 kB] 193s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 kmer all 0~20150903+r2013-8build4 [3840 B] 193s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 kmer-examples all 0~20150903+r2013-8build4 [2351 kB] 193s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libmeryl-dev arm64 0~20150903+r2013-8build4 [61.4 kB] 193s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmer-dev arm64 0~20150903+r2013-8build4 [224 kB] 194s Fetched 67.5 MB in 4s (15.3 MB/s) 194s Selecting previously unselected package libgdk-pixbuf2.0-common. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75860 files and directories currently installed.) 194s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 194s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 194s Selecting previously unselected package libjpeg-turbo8:arm64. 195s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 195s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 195s Selecting previously unselected package libjpeg8:arm64. 195s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 195s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 195s Selecting previously unselected package libdeflate0:arm64. 195s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 195s Unpacking libdeflate0:arm64 (1.19-1) ... 195s Selecting previously unselected package libjbig0:arm64. 195s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 195s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 195s Selecting previously unselected package liblerc4:arm64. 195s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 195s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 195s Selecting previously unselected package libsharpyuv0:arm64. 195s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 195s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 195s Selecting previously unselected package libwebp7:arm64. 195s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 195s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 195s Selecting previously unselected package libtiff6:arm64. 195s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 195s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 195s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 195s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 195s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 195s Selecting previously unselected package gtk-update-icon-cache. 195s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 195s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 195s Selecting previously unselected package hicolor-icon-theme. 195s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 195s Unpacking hicolor-icon-theme (0.17-2) ... 195s Selecting previously unselected package humanity-icon-theme. 195s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 195s Unpacking humanity-icon-theme (0.6.16) ... 197s Selecting previously unselected package ubuntu-mono. 197s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 197s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 198s Selecting previously unselected package adwaita-icon-theme. 198s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 198s Unpacking adwaita-icon-theme (46~rc-1) ... 198s Selecting previously unselected package at-spi2-common. 198s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 198s Unpacking at-spi2-common (2.50.0-1) ... 198s Selecting previously unselected package libfile-which-perl. 198s Preparing to unpack .../016-libfile-which-perl_1.27-2_all.deb ... 198s Unpacking libfile-which-perl (1.27-2) ... 198s Selecting previously unselected package leaff. 198s Preparing to unpack .../017-leaff_0~20150903+r2013-8build4_arm64.deb ... 198s Unpacking leaff (0~20150903+r2013-8build4) ... 199s Selecting previously unselected package meryl. 199s Preparing to unpack .../018-meryl_0~20150903+r2013-8build4_arm64.deb ... 199s Unpacking meryl (0~20150903+r2013-8build4) ... 199s Selecting previously unselected package aglfn. 199s Preparing to unpack .../019-aglfn_1.7+git20191031.4036a9c-2_all.deb ... 199s Unpacking aglfn (1.7+git20191031.4036a9c-2) ... 199s Selecting previously unselected package gnuplot-data. 199s Preparing to unpack .../020-gnuplot-data_5.4.4+dfsg1-2build1_all.deb ... 199s Unpacking gnuplot-data (5.4.4+dfsg1-2build1) ... 199s Selecting previously unselected package fonts-dejavu-mono. 199s Preparing to unpack .../021-fonts-dejavu-mono_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-mono (2.37-8) ... 199s Selecting previously unselected package fonts-dejavu-core. 199s Preparing to unpack .../022-fonts-dejavu-core_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-core (2.37-8) ... 199s Selecting previously unselected package fontconfig-config. 199s Preparing to unpack .../023-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 199s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 199s Selecting previously unselected package libfontconfig1:arm64. 199s Preparing to unpack .../024-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 199s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 199s Selecting previously unselected package libpixman-1-0:arm64. 199s Preparing to unpack .../025-libpixman-1-0_0.42.2-1_arm64.deb ... 199s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 199s Selecting previously unselected package libxcb-render0:arm64. 199s Preparing to unpack .../026-libxcb-render0_1.15-1_arm64.deb ... 199s Unpacking libxcb-render0:arm64 (1.15-1) ... 199s Selecting previously unselected package libxcb-shm0:arm64. 199s Preparing to unpack .../027-libxcb-shm0_1.15-1_arm64.deb ... 199s Unpacking libxcb-shm0:arm64 (1.15-1) ... 199s Selecting previously unselected package libxrender1:arm64. 199s Preparing to unpack .../028-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 199s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 199s Selecting previously unselected package libcairo2:arm64. 199s Preparing to unpack .../029-libcairo2_1.18.0-1_arm64.deb ... 199s Unpacking libcairo2:arm64 (1.18.0-1) ... 199s Selecting previously unselected package libxpm4:arm64. 199s Preparing to unpack .../030-libxpm4_1%3a3.5.17-1_arm64.deb ... 199s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 199s Selecting previously unselected package libgd3:arm64. 199s Preparing to unpack .../031-libgd3_2.3.3-9ubuntu1_arm64.deb ... 199s Unpacking libgd3:arm64 (2.3.3-9ubuntu1) ... 199s Selecting previously unselected package liblua5.4-0:arm64. 199s Preparing to unpack .../032-liblua5.4-0_5.4.6-3_arm64.deb ... 199s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 199s Selecting previously unselected package fontconfig. 199s Preparing to unpack .../033-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 199s Unpacking fontconfig (2.15.0-1ubuntu1) ... 200s Selecting previously unselected package libgraphite2-3:arm64. 200s Preparing to unpack .../034-libgraphite2-3_1.3.14-2_arm64.deb ... 200s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 200s Selecting previously unselected package libharfbuzz0b:arm64. 200s Preparing to unpack .../035-libharfbuzz0b_8.3.0-2_arm64.deb ... 200s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 200s Selecting previously unselected package libthai-data. 200s Preparing to unpack .../036-libthai-data_0.1.29-2_all.deb ... 200s Unpacking libthai-data (0.1.29-2) ... 200s Selecting previously unselected package libdatrie1:arm64. 200s Preparing to unpack .../037-libdatrie1_0.2.13-3_arm64.deb ... 200s Unpacking libdatrie1:arm64 (0.2.13-3) ... 200s Selecting previously unselected package libthai0:arm64. 200s Preparing to unpack .../038-libthai0_0.1.29-2_arm64.deb ... 200s Unpacking libthai0:arm64 (0.1.29-2) ... 200s Selecting previously unselected package libpango-1.0-0:arm64. 200s Preparing to unpack .../039-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 200s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 200s Selecting previously unselected package libpangoft2-1.0-0:arm64. 200s Preparing to unpack .../040-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 200s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 200s Selecting previously unselected package libpangocairo-1.0-0:arm64. 200s Preparing to unpack .../041-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 200s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 200s Selecting previously unselected package libdouble-conversion3:arm64. 200s Preparing to unpack .../042-libdouble-conversion3_3.3.0-1_arm64.deb ... 200s Unpacking libdouble-conversion3:arm64 (3.3.0-1) ... 200s Selecting previously unselected package libpcre2-16-0:arm64. 200s Preparing to unpack .../043-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 200s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 200s Selecting previously unselected package libqt5core5a:arm64. 200s Preparing to unpack .../044-libqt5core5a_5.15.12+dfsg-3ubuntu1_arm64.deb ... 200s Unpacking libqt5core5a:arm64 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unselected package libwayland-client0:arm64. 201s Preparing to unpack .../050-libwayland-client0_1.22.0-2.1_arm64.deb ... 201s Unpacking libwayland-client0:arm64 (1.22.0-2.1) ... 201s Selecting previously unselected package libx11-xcb1:arm64. 201s Preparing to unpack .../051-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 201s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 201s Selecting previously unselected package libxcb-dri2-0:arm64. 201s Preparing to unpack .../052-libxcb-dri2-0_1.15-1_arm64.deb ... 201s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 201s Selecting previously unselected package libxcb-dri3-0:arm64. 201s Preparing to unpack .../053-libxcb-dri3-0_1.15-1_arm64.deb ... 201s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 201s Selecting previously unselected package libxcb-present0:arm64. 201s Preparing to unpack .../054-libxcb-present0_1.15-1_arm64.deb ... 201s Unpacking libxcb-present0:arm64 (1.15-1) ... 201s Selecting previously unselected package libxcb-sync1:arm64. 201s Preparing to unpack .../055-libxcb-sync1_1.15-1_arm64.deb ... 201s Unpacking libxcb-sync1:arm64 (1.15-1) ... 201s Selecting previously unselected package libxcb-xfixes0:arm64. 201s Preparing to unpack .../056-libxcb-xfixes0_1.15-1_arm64.deb ... 201s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 201s Selecting previously unselected package libxshmfence1:arm64. 201s Preparing to unpack .../057-libxshmfence1_1.3-1build4_arm64.deb ... 201s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 201s Selecting previously unselected package libegl-mesa0:arm64. 201s Preparing to unpack .../058-libegl-mesa0_24.0.1-1ubuntu1_arm64.deb ... 201s Unpacking libegl-mesa0:arm64 (24.0.1-1ubuntu1) ... 201s Selecting previously unselected package libegl1:arm64. 201s Preparing to unpack .../059-libegl1_1.7.0-1_arm64.deb ... 201s Unpacking libegl1:arm64 (1.7.0-1) ... 201s Selecting previously unselected package libxcb-glx0:arm64. 201s Preparing to unpack .../060-libxcb-glx0_1.15-1_arm64.deb ... 201s Unpacking libxcb-glx0:arm64 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package libdrm-radeon1:arm64. 201s Preparing to unpack .../066-libdrm-radeon1_2.4.120-2_arm64.deb ... 201s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 201s Selecting previously unselected package libllvm17:arm64. 201s Preparing to unpack .../067-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 201s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 203s Selecting previously unselected package libgl1-mesa-dri:arm64. 203s Preparing to unpack .../068-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 203s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 203s Selecting previously unselected package libglx-mesa0:arm64. 203s Preparing to unpack .../069-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 203s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 203s Selecting previously unselected package libglx0:arm64. 203s Preparing to unpack .../070-libglx0_1.7.0-1_arm64.deb ... 203s Unpacking libglx0:arm64 (1.7.0-1) ... 203s Selecting previously unselected package libgl1:arm64. 203s Preparing to unpack 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previously unselected package libinput-bin. 204s Preparing to unpack .../077-libinput-bin_1.25.0-1_arm64.deb ... 204s Unpacking libinput-bin (1.25.0-1) ... 204s Selecting previously unselected package libinput10:arm64. 204s Preparing to unpack .../078-libinput10_1.25.0-1_arm64.deb ... 204s Unpacking libinput10:arm64 (1.25.0-1) ... 204s Selecting previously unselected package libmd4c0:arm64. 204s Preparing to unpack .../079-libmd4c0_0.4.8-1_arm64.deb ... 204s Unpacking libmd4c0:arm64 (0.4.8-1) ... 204s Selecting previously unselected package libqt5dbus5:arm64. 204s Preparing to unpack .../080-libqt5dbus5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 204s Unpacking libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ... 204s Selecting previously unselected package libqt5network5:arm64. 204s Preparing to unpack .../081-libqt5network5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 204s Unpacking libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ... 204s Selecting previously unselected package libsm6:arm64. 204s Preparing to unpack .../082-libsm6_2%3a1.2.3-1build2_arm64.deb ... 204s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 204s Selecting previously unselected package libxcb-icccm4:arm64. 204s Preparing to unpack .../083-libxcb-icccm4_0.4.1-1.1build2_arm64.deb ... 204s Unpacking libxcb-icccm4:arm64 (0.4.1-1.1build2) ... 204s Selecting previously unselected package libxcb-util1:arm64. 204s Preparing to unpack .../084-libxcb-util1_0.4.0-1build2_arm64.deb ... 204s Unpacking libxcb-util1:arm64 (0.4.0-1build2) ... 204s Selecting previously unselected package libxcb-image0:arm64. 204s Preparing to unpack .../085-libxcb-image0_0.4.0-2_arm64.deb ... 204s Unpacking libxcb-image0:arm64 (0.4.0-2) ... 204s Selecting previously unselected package libxcb-keysyms1:arm64. 204s Preparing to unpack .../086-libxcb-keysyms1_0.4.0-1build3_arm64.deb ... 204s Unpacking libxcb-keysyms1:arm64 (0.4.0-1build3) ... 205s Selecting previously unselected package libxcb-render-util0:arm64. 205s Preparing to unpack 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to unpack .../102-libwxbase3.2-1_3.2.4+dfsg-3_arm64.deb ... 206s Unpacking libwxbase3.2-1:arm64 (3.2.4+dfsg-3) ... 206s Selecting previously unselected package libatk1.0-0:arm64. 206s Preparing to unpack .../103-libatk1.0-0_2.50.0-1_arm64.deb ... 206s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 206s Selecting previously unselected package libxi6:arm64. 206s Preparing to unpack .../104-libxi6_2%3a1.8.1-1_arm64.deb ... 206s Unpacking libxi6:arm64 (2:1.8.1-1) ... 206s Selecting previously unselected package libatspi2.0-0:arm64. 206s Preparing to unpack .../105-libatspi2.0-0_2.50.0-1_arm64.deb ... 206s Unpacking libatspi2.0-0:arm64 (2.50.0-1) ... 206s Selecting previously unselected package libatk-bridge2.0-0:arm64. 206s Preparing to unpack .../106-libatk-bridge2.0-0_2.50.0-1_arm64.deb ... 206s Unpacking libatk-bridge2.0-0:arm64 (2.50.0-1) ... 206s Selecting previously unselected package libcairo-gobject2:arm64. 206s Preparing to unpack .../107-libcairo-gobject2_1.18.0-1_arm64.deb ... 206s 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unselected package libxcomposite1:arm64. 206s Preparing to unpack .../113-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 206s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 206s Selecting previously unselected package libxcursor1:arm64. 206s Preparing to unpack .../114-libxcursor1_1%3a1.2.1-1_arm64.deb ... 206s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 206s Selecting previously unselected package libxdamage1:arm64. 206s Preparing to unpack .../115-libxdamage1_1%3a1.1.6-1_arm64.deb ... 206s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 207s Selecting previously unselected package libxinerama1:arm64. 207s Preparing to unpack .../116-libxinerama1_2%3a1.1.4-3_arm64.deb ... 207s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 207s Selecting previously unselected package libxrandr2:arm64. 207s Preparing to unpack .../117-libxrandr2_2%3a1.5.2-2_arm64.deb ... 207s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 207s Selecting previously unselected package libdconf1:arm64. 207s Preparing to unpack .../118-libdconf1_0.40.0-4_arm64.deb ... 207s Unpacking libdconf1:arm64 (0.40.0-4) ... 207s Selecting previously unselected package dconf-service. 207s Preparing to unpack .../119-dconf-service_0.40.0-4_arm64.deb ... 207s Unpacking dconf-service (0.40.0-4) ... 207s Selecting previously unselected package dconf-gsettings-backend:arm64. 207s Preparing to unpack .../120-dconf-gsettings-backend_0.40.0-4_arm64.deb ... 207s Unpacking dconf-gsettings-backend:arm64 (0.40.0-4) ... 207s Selecting previously unselected package libgtk-3-common. 207s Preparing to unpack .../121-libgtk-3-common_3.24.40-2ubuntu1_all.deb ... 207s Unpacking libgtk-3-common (3.24.40-2ubuntu1) ... 207s Selecting previously unselected package libgtk-3-0:arm64. 207s Preparing to unpack .../122-libgtk-3-0_3.24.40-2ubuntu1_arm64.deb ... 207s Unpacking libgtk-3-0:arm64 (3.24.40-2ubuntu1) ... 207s Selecting previously unselected package libnotify4:arm64. 207s Preparing to unpack .../123-libnotify4_0.8.3-1_arm64.deb ... 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package sim4db. 208s Preparing to unpack .../129-sim4db_0~20150903+r2013-8build4_arm64.deb ... 208s Unpacking sim4db (0~20150903+r2013-8build4) ... 208s Selecting previously unselected package kmer. 208s Preparing to unpack .../130-kmer_0~20150903+r2013-8build4_all.deb ... 208s Unpacking kmer (0~20150903+r2013-8build4) ... 208s Selecting previously unselected package kmer-examples. 208s Preparing to unpack .../131-kmer-examples_0~20150903+r2013-8build4_all.deb ... 208s Unpacking kmer-examples (0~20150903+r2013-8build4) ... 208s Selecting previously unselected package libmeryl-dev. 208s Preparing to unpack .../132-libmeryl-dev_0~20150903+r2013-8build4_arm64.deb ... 208s Unpacking libmeryl-dev (0~20150903+r2013-8build4) ... 208s Selecting previously unselected package libkmer-dev. 208s Preparing to unpack .../133-libkmer-dev_0~20150903+r2013-8build4_arm64.deb ... 208s Unpacking libkmer-dev (0~20150903+r2013-8build4) ... 208s Selecting previously unselected package autopkgtest-satdep. 208s Preparing to unpack .../134-1-autopkgtest-satdep.deb ... 208s Unpacking autopkgtest-satdep (0) ... 208s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 208s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 208s Setting up liblcms2-2:arm64 (2.14-2) ... 208s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 208s Setting up leaff (0~20150903+r2013-8build4) ... 208s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 208s Setting up libwayland-server0:arm64 (1.22.0-2.1) ... 208s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 208s Setting up libfile-which-perl (1.27-2) ... 208s Setting up libdouble-conversion3:arm64 (3.3.0-1) ... 208s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 208s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 208s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 208s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 208s Setting up libxpm4:arm64 (1:3.5.17-1) ... 208s Setting up hicolor-icon-theme (0.17-2) ... 208s Setting up libxi6:arm64 (2:1.8.1-1) ... 208s Setting up libxcb-xinput0:arm64 (1.15-1) ... 208s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 208s Setting up libdatrie1:arm64 (0.2.13-3) ... 208s Setting up libxcb-render0:arm64 (1.15-1) ... 208s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 208s Setting up libglvnd0:arm64 (1.7.0-1) ... 208s Setting up libxcb-glx0:arm64 (1.15-1) ... 208s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 208s Setting up libxcb-keysyms1:arm64 (0.4.0-1build3) ... 208s Setting up libxcb-shape0:arm64 (1.15-1) ... 208s Setting up x11-common (1:7.7+23ubuntu2) ... 209s Setting up libdeflate0:arm64 (1.19-1) ... 209s Setting up libxcb-render-util0:arm64 (0.3.9-1build3) ... 209s Setting up libxcb-shm0:arm64 (1.15-1) ... 209s Setting up libxcb-icccm4:arm64 (0.4.1-1.1build2) ... 209s Setting up libatspi2.0-0:arm64 (2.50.0-1) ... 209s Setting up sim4db (0~20150903+r2013-8build4) ... 209s Setting up kmer-examples (0~20150903+r2013-8build4) ... 209s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 209s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 209s Setting up libcolord2:arm64 (1.4.7-1) ... 209s Setting up libxcb-util1:arm64 (0.4.0-1build2) ... 209s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 209s Setting up libxcb-xkb1:arm64 (1.15-1) ... 209s Setting up libxcb-image0:arm64 (0.4.0-2) ... 209s Setting up libxcb-present0:arm64 (1.15-1) ... 209s Setting up libdconf1:arm64 (0.40.0-4) ... 209s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 209s Setting up libxcb-xinerama0:arm64 (1.15-1) ... 209s Setting up libepoxy0:arm64 (1.5.10-1) ... 209s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 209s Setting up libxcb-sync1:arm64 (1.15-1) ... 209s Setting up aglfn (1.7+git20191031.4036a9c-2) ... 209s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 209s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 209s Setting up libxkbcommon-x11-0:arm64 (1.6.0-1) ... 209s Setting up fonts-dejavu-mono (2.37-8) ... 209s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 209s Setting up libmeryl-dev (0~20150903+r2013-8build4) ... 209s Setting up fonts-dejavu-core (2.37-8) ... 209s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 209s Setting up libqt5core5a:arm64 (5.15.12+dfsg-3ubuntu1) ... 209s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 209s Setting up libmtdev1:arm64 (1.1.6-1build4) ... 209s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 209s Setting up libwebp7:arm64 (1.3.2-0.4) ... 209s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 209s Setting up libxshmfence1:arm64 (1.3-1build4) ... 209s Setting up at-spi2-common (2.50.0-1) ... 209s Setting up libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ... 209s Setting up libxcb-randr0:arm64 (1.15-1) ... 209s Setting up libmd4c0:arm64 (0.4.8-1) ... 209s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 209s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 209s Setting up libthai-data (0.1.29-2) ... 209s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 209s Setting up libwayland-egl1:arm64 (1.22.0-2.1) ... 209s Setting up meryl (0~20150903+r2013-8build4) ... 209s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 209s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 209s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 209s Setting up libwacom-common (2.10.0-1) ... 209s Setting up libwayland-client0:arm64 (1.22.0-2.1) ... 209s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 209s Setting up gnuplot-data (5.4.4+dfsg1-2build1) ... 209s Setting up libice6:arm64 (2:1.0.10-1build2) ... 209s Setting up libgbm1:arm64 (24.0.1-1ubuntu1) ... 209s Setting up libwacom9:arm64 (2.10.0-1) ... 209s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 210s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 210s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 210s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 210s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 210s Setting up dconf-service (0.40.0-4) ... 210s Setting up libwxbase3.2-1:arm64 (3.2.4+dfsg-3) ... 210s Setting up libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ... 210s Setting up libinput-bin (1.25.0-1) ... 210s Setting up libatk-bridge2.0-0:arm64 (2.50.0-1) ... 210s Setting up libthai0:arm64 (0.1.29-2) ... 210s Setting up libegl-mesa0:arm64 (24.0.1-1ubuntu1) ... 210s Setting up libkmer-dev (0~20150903+r2013-8build4) ... 210s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 210s Setting up libwayland-cursor0:arm64 (1.22.0-2.1) ... 210s Setting up libegl1:arm64 (1.7.0-1) ... 210s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 210s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 210s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 210s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 210s Setting up libinput10:arm64 (1.25.0-1) ... 210s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 210s Setting up fontconfig (2.15.0-1ubuntu1) ... 212s Regenerating fonts cache... done. 212s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 212s Setting up libglx0:arm64 (1.7.0-1) ... 212s Setting up dconf-gsettings-backend:arm64 (0.40.0-4) ... 212s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 212s Setting up libcairo2:arm64 (1.18.0-1) ... 212s Setting up libgl1:arm64 (1.7.0-1) ... 212s Setting up libnotify4:arm64 (0.8.3-1) ... 212s Setting up libgd3:arm64 (2.3.3-9ubuntu1) ... 212s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 212s Setting up libcairo-gobject2:arm64 (1.18.0-1) ... 212s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 212s Setting up libgtk-3-common (3.24.40-2ubuntu1) ... 212s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 212s Setting up libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ... 212s Setting up libqt5widgets5:arm64 (5.15.12+dfsg-3ubuntu1) ... 212s Setting up libqt5printsupport5:arm64 (5.15.12+dfsg-3ubuntu1) ... 212s Setting up libqt5svg5:arm64 (5.15.12-1) ... 212s Setting up adwaita-icon-theme (46~rc-1) ... 212s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 212s Setting up humanity-icon-theme (0.6.16) ... 212s Setting up ubuntu-mono (24.04-0ubuntu1) ... 212s Processing triggers for man-db (2.12.0-3) ... 213s Processing triggers for udev (255.2-3ubuntu2) ... 214s Processing triggers for libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 214s Setting up libgtk-3-0:arm64 (3.24.40-2ubuntu1) ... 214s Processing triggers for libc-bin (2.39-0ubuntu2) ... 214s Setting up libwxgtk3.2-1:arm64 (3.2.4+dfsg-3) ... 214s Setting up gnuplot-qt (5.4.4+dfsg1-2build1) ... 214s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode 214s Setting up gnuplot (5.4.4+dfsg1-2build1) ... 214s Setting up atac (0~20150903+r2013-8build4) ... 214s Setting up kmer (0~20150903+r2013-8build4) ... 214s Setting up autopkgtest-satdep (0) ... 214s Processing triggers for libc-bin (2.39-0ubuntu2) ... 227s (Reading database ... 90340 files and directories currently installed.) 227s Removing autopkgtest-satdep (0) ... 228s autopkgtest [11:32:02]: test sim4db-unit-test: [----------------------- 229s Testing sim4 for intra-species alignment... 229s 233s Testing sim4cc for inter-species alignment... 233s 246s RESULTS: OK 246s 247s autopkgtest [11:32:21]: test sim4db-unit-test: -----------------------] 247s autopkgtest [11:32:21]: test sim4db-unit-test: - - - - - - - - - - results - - - - - - - - - - 247s sim4db-unit-test PASS 248s autopkgtest [11:32:22]: test atac-unit-test: preparing testbed 251s Reading package lists... 251s Building dependency tree... 251s Reading state information... 252s Starting pkgProblemResolver with broken count: 0 252s Starting 2 pkgProblemResolver with broken count: 0 252s Done 254s The following NEW packages will be installed: 254s autopkgtest-satdep 254s 0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded. 254s Need to get 0 B/748 B of archives. 254s After this operation, 0 B of additional disk space will be used. 254s Get:1 /tmp/autopkgtest.75w1B8/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 254s Selecting previously unselected package autopkgtest-satdep. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 90340 files and directories currently installed.) 255s Preparing to unpack .../2-autopkgtest-satdep.deb ... 255s Unpacking autopkgtest-satdep (0) ... 255s Setting up autopkgtest-satdep (0) ... 261s (Reading database ... 90340 files and directories currently installed.) 261s Removing autopkgtest-satdep (0) ... 261s autopkgtest [11:32:35]: test atac-unit-test: [----------------------- 262s Rewriting '/tmp/autopkgtest.75w1B8/autopkgtest_tmp/GCF_000195855.1_ASM19585v1_genomic.fna' to '/tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.fasta', removing newlines. 262s Rewriting '/tmp/autopkgtest.75w1B8/autopkgtest_tmp/GCF_000195955.2_ASM19595v2_genomic.fna' to '/tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Tuber.fasta', removing newlines. 262s 262s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.fasta -o /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.ms20 262s 264s 264s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.ms20 -o /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.ms20.le1 264s 264s 264s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Tuber.fasta -o /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Tuber.ms20 264s 267s 267s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Tuber.ms20 -o /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Tuber.ms20.le1 267s 267s Finding the min count between Lepr.ms20.le1 and Tuber.ms20.le1. 267s 267s /usr/bin/meryl -M min -s /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.ms20.le1 -s /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Tuber.ms20.le1 -o /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 267s 268s includeSize is proportional to 1048608. 268s excludeSize is proportional to 15724920. 268s /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 has 33265 mers. 268s /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.ms20 has 3268184 mers. 268s includeSize is exactly 33265 mers. 268s excludeSize is exactly 3234919 mers. 268s 268s /usr/bin/../lib/atac/bin/seatac -verbose -mersize 20 -minlength 20 -maxgap 0 -numthreads 4 -table /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.fasta -stream /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Tuber.fasta -only /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.include -output /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches -filtername /usr/bin/../lib/atac/lib/filter-heavychains.so -filteropts "-1 Lepr -2 Tuber -S 100 -J 100000" > /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber-000.out 2>&1 268s 270s 270s /usr/bin/../lib/atac/bin/matchExtender /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.header /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches > /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 270s 270s WARNING: TMPDIR not set, defaulting to '/tmp/autopkgtest.75w1B8/autopkgtest_tmp/results'. 270s 270s python3 /usr/bin/../lib/atac/bin/AtacDriver.py /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 270s 270s Read checkpoint in 0 seconds. 270s Creating /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Lepr.fasta.idxStore 270s Creating /tmp/autopkgtest.75w1B8/autopkgtest_tmp/meryldir/Tuber.fasta.idxStore 270s We need to make the raw matches. 270s runName = /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 270s 270s Keep step=0 270s At step=0 270s Time elapsed=0.000774383544921875 270s At uniqueFilter, step=1 270s Time elapsed=0.0007996559143066406 270s Running UniqueFilter 270s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/tmpi2n6sf17 > /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/tmpj5ysyc21 270s time elapsed is 0.0037407875061035156 270s time elapsed is 0.00011229515075683594 271s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/tmpuo0smn2r > /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/tmp_3901i8y 271s time elapsed is 0.0035066604614257812 271s time elapsed is 0.00011157989501953125 271s At filterByMatchLength, step=2 271s Time elapsed=0.19170403480529785 271s Running filterByMatchLength 271s At trimMatchOverlaps, step=3 271s Time elapsed=0.1922924518585205 271s Start trimming for bp one-to-one-ness 271s trimMatchOverlapsInX: 271s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 271s 271s trimMatchOverlapsInY: 271s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 271s 271s Finished trimming for bp one-to-one-ness 271s At formPerfectRuns, step=4 271s Time elapsed=0.23573541641235352 271s from /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim making /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 271s formPerfectRuns step=0 271s formPerfectRuns step=1 271s formPerfectRuns step=2 271s formPerfectRuns step=3 271s At onlyKeepLongRuns, step=5 271s Time elapsed=0.2761244773864746 271s from /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 making /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100 271s At formPerfectRuns, step=6 271s Time elapsed=0.27694153785705566 271s Heal the perfect runs 271s formPerfectRuns step=0 271s formPerfectRuns step=1 271s formPerfectRuns step=2 271s formPerfectRuns step=3 271s At squeezeIntraRunGaps, step=7 271s Time elapsed=0.3186309337615967 271s from /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr to /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr.sq 271s countLines 0 inter_run_gap_count 0 closed_gap_count 0 squeezed 0 x_len 0 y_len 0 x_nonACGT 0 y_nonACGT 0 271s theIsolatedSNPcount = 0 271s completefillednotXY = 0 271s completefilledXnotY = 0 271s completefilledYnotX = 0 271s completefilledXandY = 0 271s At TrimMatchOverlaps, step=8 271s Time elapsed=0.3199121952056885 271s Start trimming for bp one-to-one-ness 271s trimMatchOverlapsInX: 271s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 271s 271s trimMatchOverlapsInY: 271s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 271s 271s Finished trimming for bp one-to-one-ness 271s At RunsAsMatches, step=9 271s Time elapsed=0.3618490695953369 271s At fillIntraRunGaps, step=10 271s Time elapsed=0.36257314682006836 271s fill the intrarun gaps 271s begin 271s countLines=0 271s countLines 0 inter_run_gap_count 0 271s At TrimMatchOverlaps, step=11 271s Time elapsed=0.3631260395050049 271s trim the overlaps 271s trimMatchOverlapsInX: 271s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 271s 271s trimMatchOverlapsInY: 271s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 271s 271s Ran in 0 seconds. 271s 271s /usr/bin/../lib/atac/bin/correctGaps -m /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.atac -l /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.log > /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.atac 271s 271s 271s cd /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -1 -f /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.ref=Lepr.clumpCost=5000.atac 271s 271s 1 load the matches 271s 2 sort the matches 271s 3 score the matches 271s 4 mark clumps 271s 5 sort the matches 271s 6 output matches with clumps 271s 271s cd /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -2 -f /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.ref=Tuber.clumpCost=5000.atac 271s 271s 1 load the matches 271s 2 sort the matches 271s 3 score the matches 271s 4 mark clumps 271s 5 sort the matches 271s 6 output matches with clumps 271s 271s /usr/bin/../lib/atac/bin/statsGenerator -a /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.atac -p /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/stats/LeprvsTuber -g A > /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/stats/LeprvsTuber.stats 271s 271s 271s perl /usr/bin/../lib/atac/bin/makeplot.pl u /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/stats/LeprvsTuber.matches.png 271s 271s 271s replot 271s ^ 271s "/tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/stats/LeprvsTuber.matches.gp" line 24: no previous plot 271s 271s 271s perl /usr/bin/../lib/atac/bin/makeplot.pl r /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/stats/LeprvsTuber.runs.png 271s 271s 271s replot 271s ^ 271s "/tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/stats/LeprvsTuber.runs.gp" line 24: no previous plot 271s 271s 271s Finished! Output is: 271s matches and runs -- /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.atac 271s clumps -- /tmp/autopkgtest.75w1B8/autopkgtest_tmp/results/LeprvsTuber.*clump*.atac 271s RESULTS: OK 271s 272s autopkgtest [11:32:46]: test atac-unit-test: -----------------------] 272s autopkgtest [11:32:46]: test atac-unit-test: - - - - - - - - - - results - - - - - - - - - - 272s atac-unit-test PASS 273s autopkgtest [11:32:47]: @@@@@@@@@@@@@@@@@@@@ summary 273s sim4db-unit-test PASS 273s atac-unit-test PASS 292s Creating nova instance adt-noble-arm64-kmer-20240319-112813-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240319.img (UUID bd25b89b-8264-4402-95d9-d9c88f21f275)...