0s autopkgtest [22:02:47]: starting date: 2024-03-09 1s autopkgtest [22:02:48]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 1s autopkgtest [22:02:48]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.assybake/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:perl,src:db5.3,src:gdbm,src:mmdebstrap --apt-upgrade kmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=perl/5.38.2-3.2 db5.3/5.3.28+dfsg2-5 gdbm/1.23-5.1 mmdebstrap/1.4.3-6' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-9.secgroup --name adt-noble-arm64-kmer-20240309-220246-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 194s autopkgtest [22:06:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 195s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 198s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2593 kB] 198s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [429 kB] 198s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [37.3 kB] 198s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [3976 B] 198s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [579 kB] 198s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 198s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 198s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 198s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [2946 kB] 198s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 198s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [39.6 kB] 198s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 212s Fetched 6777 kB in 6s (1082 kB/s) 213s Reading package lists... 231s Reading package lists... 232s Building dependency tree... 232s Reading state information... 234s Calculating upgrade... 235s The following packages were automatically installed and are no longer required: 235s libgdbm-compat4t64 libperl5.38 lto-disabled-list make perl-modules-5.38 235s ubuntu-advantage-tools 235s Use 'sudo apt autoremove' to remove them. 237s The following packages will be REMOVED: 237s dpkg-dev libdpkg-perl libgdbm-compat4 libgdbm6 perl 237s The following NEW packages will be installed: 237s libgdbm-compat4t64 libgdbm6t64 237s The following packages have been kept back: 237s libperl5.38 237s The following packages will be upgraded: 237s efibootmgr perl-base perl-modules-5.38 python3-attr ubuntu-minimal 237s ubuntu-standard 237s 6 upgraded, 2 newly installed, 5 to remove and 1 not upgraded. 237s Need to get 5029 kB of archives. 237s After this operation, 4158 kB disk space will be freed. 237s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-base arm64 5.38.2-3.2 [1777 kB] 237s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm6t64 arm64 1.23-5.1 [34.3 kB] 237s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm-compat4t64 arm64 1.23-5.1 [6576 B] 237s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 237s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.535 [10.5 kB] 237s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.535 [10.5 kB] 237s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 efibootmgr arm64 18-1build1 [31.5 kB] 237s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 python3-attr all 23.2.0-2 [48.6 kB] 238s Fetched 5029 kB in 1s (5433 kB/s) 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 239s Removing dpkg-dev (1.22.4ubuntu5) ... 239s Removing libdpkg-perl (1.22.4ubuntu5) ... 239s Removing perl (5.38.2-3) ... 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75281 files and directories currently installed.) 239s Preparing to unpack .../perl-base_5.38.2-3.2_arm64.deb ... 239s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 241s Setting up perl-base (5.38.2-3.2) ... 241s dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested: 241s python3-gdbm:arm64 depends on libgdbm6 (>= 1.16). 241s man-db depends on libgdbm6 (>= 1.16). 241s libperl5.38:arm64 depends on libgdbm6 (>= 1.21). 241s libgdbm-compat4:arm64 depends on libgdbm6 (>= 1.16). 241s 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75281 files and directories currently installed.) 241s Removing libgdbm6:arm64 (1.23-5) ... 241s Selecting previously unselected package libgdbm6t64:arm64. 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75276 files and directories currently installed.) 241s Preparing to unpack .../libgdbm6t64_1.23-5.1_arm64.deb ... 241s Unpacking libgdbm6t64:arm64 (1.23-5.1) ... 241s dpkg: libgdbm-compat4:arm64: dependency problems, but removing anyway as you requested: 241s libperl5.38:arm64 depends on libgdbm-compat4 (>= 1.18-3). 241s 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75282 files and directories currently installed.) 241s Removing libgdbm-compat4:arm64 (1.23-5) ... 241s Selecting previously unselected package libgdbm-compat4t64:arm64. 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75277 files and directories currently installed.) 242s Preparing to unpack .../0-libgdbm-compat4t64_1.23-5.1_arm64.deb ... 242s Unpacking libgdbm-compat4t64:arm64 (1.23-5.1) ... 242s Preparing to unpack .../1-perl-modules-5.38_5.38.2-3.2_all.deb ... 242s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 244s Preparing to unpack .../2-ubuntu-minimal_1.535_arm64.deb ... 244s Unpacking ubuntu-minimal (1.535) over (1.534) ... 244s Preparing to unpack .../3-ubuntu-standard_1.535_arm64.deb ... 244s Unpacking ubuntu-standard (1.535) over (1.534) ... 244s Preparing to unpack .../4-efibootmgr_18-1build1_arm64.deb ... 244s Unpacking efibootmgr (18-1build1) over (18-1) ... 245s Preparing to unpack .../5-python3-attr_23.2.0-2_all.deb ... 245s Unpacking python3-attr (23.2.0-2) over (23.2.0-1) ... 245s Setting up python3-attr (23.2.0-2) ... 246s Setting up efibootmgr (18-1build1) ... 246s Setting up libgdbm6t64:arm64 (1.23-5.1) ... 246s Setting up ubuntu-minimal (1.535) ... 246s Setting up libgdbm-compat4t64:arm64 (1.23-5.1) ... 246s Setting up ubuntu-standard (1.535) ... 246s Setting up perl-modules-5.38 (5.38.2-3.2) ... 246s Processing triggers for man-db (2.12.0-3) ... 252s Processing triggers for libc-bin (2.39-0ubuntu2) ... 252s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1Reading package lists... 252s Building dependency tree... 252s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s 252s Reading state information... 254s The following packages will be REMOVED: 254s libgdbm-compat4t64* libperl5.38* lto-disabled-list* make* perl-modules-5.38* 254s ubuntu-advantage-tools* 255s 0 upgraded, 0 newly installed, 6 to remove and 0 not upgraded. 255s After this operation, 52.0 MB disk space will be freed. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75283 files and directories currently installed.) 255s Removing libperl5.38:arm64 (5.38.2-3) ... 255s Removing libgdbm-compat4t64:arm64 (1.23-5.1) ... 255s Removing lto-disabled-list (47) ... 256s Removing make (4.3-4.1build1) ... 256s Removing perl-modules-5.38 (5.38.2-3.2) ... 256s Removing ubuntu-advantage-tools (31.1) ... 256s Processing triggers for man-db (2.12.0-3) ... 257s Processing triggers for libc-bin (2.39-0ubuntu2) ... 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73306 files and directories currently installed.) 258s Purging configuration files for ubuntu-advantage-tools (31.1) ... 261s sh: Attempting to set up Debian/Ubuntu apt sources automatically 261s sh: Distribution appears to be Ubuntu 272s Reading package lists... 273s Building dependency tree... 273s Reading state information... 276s eatmydata is already the newest version (131-1). 276s dbus is already the newest version (1.14.10-4ubuntu1). 276s dbus set to manually installed. 276s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 276s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 276s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 276s Reading package lists... 277s Building dependency tree... 277s Reading state information... 279s rng-tools-debian is already the newest version (2.4). 279s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 280s Reading package lists... 281s Building dependency tree... 281s Reading state information... 283s haveged is already the newest version (1.9.14-1ubuntu1). 283s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 283s Reading package lists... 284s Building dependency tree... 284s Reading state information... 286s The following additional packages will be installed: 286s libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 lto-disabled-list 286s make perl perl-modules-5.38 286s Suggested packages: 286s debian-keyring gcc | c-compiler git bzr make-doc perl-doc 286s libterm-readline-gnu-perl | libterm-readline-perl-perl 286s libtap-harness-archive-perl 286s Recommended packages: 286s build-essential gcc | c-compiler fakeroot libalgorithm-merge-perl 286s libfile-fcntllock-perl 286s The following packages will be REMOVED: 286s libdb5.3 286s The following NEW packages will be installed: 286s dpkg-dev libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 286s lto-disabled-list make perl perl-modules-5.38 286s 0 upgraded, 9 newly installed, 1 to remove and 0 not upgraded. 286s Need to get 7257 kB/10.4 MB of archives. 286s After this operation, 56.1 MB of additional disk space will be used. 286s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-5 [719 kB] 287s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libperl5.38t64 arm64 5.38.2-3.2 [4771 kB] 289s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl arm64 5.38.2-3.2 [231 kB] 289s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.4ubuntu5 [268 kB] 289s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 make arm64 4.3-4.1build1 [177 kB] 289s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 47 [12.4 kB] 289s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.4ubuntu5 [1078 kB] 291s Fetched 7257 kB in 3s (2382 kB/s) 291s dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: 291s libsasl2-modules-db:arm64 depends on libdb5.3. 291s libpython3.12-stdlib:arm64 depends on libdb5.3. 291s libpython3.11-stdlib:arm64 depends on libdb5.3. 291s libpam-modules:arm64 depends on libdb5.3. 291s iproute2 depends on libdb5.3. 291s apt-utils depends on libdb5.3. 291s 291s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73306 files and directories currently installed.) 291s Removing libdb5.3:arm64 (5.3.28+dfsg2-4) ... 291s Selecting previously unselected package libdb5.3t64:arm64. 292s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73300 files and directories currently installed.) 292s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5_arm64.deb ... 292s Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-5) ... 292s Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-5) ... 292s Selecting previously unselected package perl-modules-5.38. 292s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73306 files and directories currently installed.) 292s Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ... 292s Unpacking perl-modules-5.38 (5.38.2-3.2) ... 294s Selecting previously unselected package libgdbm-compat4t64:arm64. 294s Preparing to unpack .../1-libgdbm-compat4t64_1.23-5.1_arm64.deb ... 294s Unpacking libgdbm-compat4t64:arm64 (1.23-5.1) ... 294s Selecting previously unselected package libperl5.38t64:arm64. 294s Preparing to unpack .../2-libperl5.38t64_5.38.2-3.2_arm64.deb ... 294s Unpacking libperl5.38t64:arm64 (5.38.2-3.2) ... 295s Selecting previously unselected package perl. 295s Preparing to unpack .../3-perl_5.38.2-3.2_arm64.deb ... 295s Unpacking perl (5.38.2-3.2) ... 296s Selecting previously unselected package libdpkg-perl. 296s Preparing to unpack .../4-libdpkg-perl_1.22.4ubuntu5_all.deb ... 296s Unpacking libdpkg-perl (1.22.4ubuntu5) ... 296s Selecting previously unselected package make. 296s Preparing to unpack .../5-make_4.3-4.1build1_arm64.deb ... 296s Unpacking make (4.3-4.1build1) ... 296s Selecting previously unselected package lto-disabled-list. 296s Preparing to unpack .../6-lto-disabled-list_47_all.deb ... 296s Unpacking lto-disabled-list (47) ... 296s Selecting previously unselected package dpkg-dev. 296s Preparing to unpack .../7-dpkg-dev_1.22.4ubuntu5_all.deb ... 296s Unpacking dpkg-dev (1.22.4ubuntu5) ... 297s Setting up lto-disabled-list (47) ... 297s Setting up libgdbm-compat4t64:arm64 (1.23-5.1) ... 297s Setting up make (4.3-4.1build1) ... 297s Setting up perl-modules-5.38 (5.38.2-3.2) ... 297s Setting up libperl5.38t64:arm64 (5.38.2-3.2) ... 297s Setting up perl (5.38.2-3.2) ... 297s Setting up libdpkg-perl (1.22.4ubuntu5) ... 297s Setting up dpkg-dev (1.22.4ubuntu5) ... 297s Processing triggers for man-db (2.12.0-3) ... 300s Processing triggers for libc-bin (2.39-0ubuntu2) ... 302s Reading package lists... 303s Building dependency tree... 303s Reading state information... 306s The following packages will be REMOVED: 306s cloud-init* python3-configobj* python3-debconf* 307s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 307s After this operation, 3248 kB disk space will be freed. 307s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 307s Removing cloud-init (24.1-0ubuntu1) ... 309s Removing python3-configobj (5.0.8-3) ... 310s Removing python3-debconf (1.5.86) ... 310s Processing triggers for man-db (2.12.0-3) ... 311s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 311s Purging configuration files for cloud-init (24.1-0ubuntu1) ... 314s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 314s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 316s Reading package lists... 317s Building dependency tree... 317s Reading state information... 319s linux-generic is already the newest version (6.8.0-11.11+1). 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 320s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 320s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 320s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 320s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 320s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 334s Reading package lists... 334s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 334s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 334s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 335s Reading package lists... 335s Building dependency tree... 335s Reading state information... 337s Calculating upgrade... 339s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 339s Reading package lists... 340s Building dependency tree... 340s Reading state information... 343s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 343s autopkgtest [22:08:30]: rebooting testbed after setup commands that affected boot 511s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 519s autopkgtest [22:11:26]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 519s autopkgtest [22:11:26]: testbed dpkg architecture: arm64 524s autopkgtest [22:11:31]: @@@@@@@@@@@@@@@@@@@@ apt-source kmer 527s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 527s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 527s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 539s Get:1 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (dsc) [2385 B] 539s Get:2 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (tar) [1252 kB] 539s Get:3 http://ftpmaster.internal/ubuntu noble/universe kmer 0~20150903+r2013-8build4 (diff) [2380 kB] 540s gpgv: Signature made Fri Jan 19 19:49:17 2024 UTC 540s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 540s gpgv: Can't check signature: No public key 540s dpkg-source: warning: cannot verify inline signature for ./kmer_0~20150903+r2013-8build4.dsc: no acceptable signature found 542s autopkgtest [22:11:49]: testing package kmer version 0~20150903+r2013-8build4 542s autopkgtest [22:11:49]: build not needed 545s autopkgtest [22:11:52]: test sim4db-unit-test: preparing testbed 557s Reading package lists... 558s Building dependency tree... 558s Reading state information... 560s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 561s Starting 2 pkgProblemResolver with broken count: 0 561s Done 563s Done 565s Starting pkgProblemResolver with broken count: 0 566s Starting 2 pkgProblemResolver with broken count: 0 566s Done 570s The following additional packages will be installed: 570s adwaita-icon-theme aglfn at-spi2-common atac dconf-gsettings-backend 570s dconf-service fontconfig fontconfig-config fonts-dejavu-core 570s fonts-dejavu-mono gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache 570s hicolor-icon-theme humanity-icon-theme kmer kmer-examples leaff 570s libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3 570s libavahi-common-data libavahi-common3 libcairo-gobject2 libcairo2 libcolord2 570s libcups2 libdatrie1 libdconf1 libdeflate0 libdouble-conversion3 570s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 570s libfile-which-perl libfontconfig1 libgbm1 libgd3 libgdk-pixbuf-2.0-0 570s libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 570s libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0 libgtk-3-common libharfbuzz0b 570s libice6 libinput-bin libinput10 libjbig0 libjpeg-turbo8 libjpeg8 libkmer-dev 570s liblcms2-2 liblerc4 libllvm17 liblua5.4-0 libmd4c0 libmeryl-dev libmtdev1 570s libnotify4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 570s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libqt5core5a libqt5dbus5 570s libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 570s libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libvulkan1 570s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 570s libwayland-egl1 libwayland-server0 libwebp7 libwxbase3.2-1 libwxgtk3.2-1 570s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 570s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 570s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 570s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 570s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 570s libxkbcommon-x11-0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxtst6 570s libxxf86vm1 meryl sim4db ubuntu-mono x11-common 570s Suggested packages: 570s gnuplot-doc colord cups-common libgd-tools gvfs liblcms2-utils 570s notification-daemon qgnomeplatform-qt5 qt5-image-formats-plugins 570s libwacom-bin gridengine-client 570s Recommended packages: 570s librsvg2-common at-spi2-core libgdk-pixbuf2.0-bin libgl1-amber-dri 570s libgtk-3-bin qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 570s mesa-vulkan-drivers | vulkan-icd 570s The following NEW packages will be installed: 570s adwaita-icon-theme aglfn at-spi2-common atac dconf-gsettings-backend 570s dconf-service fontconfig fontconfig-config fonts-dejavu-core 570s fonts-dejavu-mono gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache 570s hicolor-icon-theme humanity-icon-theme kmer kmer-examples leaff 570s libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3 570s libavahi-common-data libavahi-common3 libcairo-gobject2 libcairo2 libcolord2 570s libcups2 libdatrie1 libdconf1 libdeflate0 libdouble-conversion3 570s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 570s libfile-which-perl libfontconfig1 libgbm1 libgd3 libgdk-pixbuf-2.0-0 570s libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 570s libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0 libgtk-3-common libharfbuzz0b 570s libice6 libinput-bin libinput10 libjbig0 libjpeg-turbo8 libjpeg8 libkmer-dev 570s liblcms2-2 liblerc4 libllvm17 liblua5.4-0 libmd4c0 libmeryl-dev libmtdev1 570s libnotify4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 570s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libqt5core5a libqt5dbus5 570s libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 570s libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libvulkan1 570s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 570s libwayland-egl1 libwayland-server0 libwebp7 libwxbase3.2-1 libwxgtk3.2-1 570s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 570s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 570s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 570s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 570s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 570s libxkbcommon-x11-0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxtst6 570s libxxf86vm1 meryl sim4db ubuntu-mono x11-common 571s 0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded. 571s 1 not fully installed or removed. 571s Need to get 67.5 MB of archives. 571s After this operation, 303 MB of additional disk space will be used. 571s Get:1 http://ftpmaster.internal/ubuntu noble/universe arm64 meryl arm64 0~20150903+r2013-8build4 [214 kB] 572s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 leaff arm64 0~20150903+r2013-8build4 [66.7 kB] 572s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 sim4db arm64 0~20150903+r2013-8build4 [531 kB] 572s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-which-perl all 1.27-2 [12.5 kB] 572s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 572s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot-data all 5.4.4+dfsg1-2build1 [74.6 kB] 572s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 572s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 572s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 572s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 572s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 572s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 572s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 572s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 572s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 572s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 572s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 572s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 572s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 573s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 573s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 573s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 573s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 573s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 573s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libgd3 arm64 2.3.3-9ubuntu1 [119 kB] 573s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 573s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 573s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 573s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 573s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 573s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 573s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 573s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 573s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 573s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 573s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libdouble-conversion3 arm64 3.3.0-1 [37.2 kB] 573s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 573s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5core5a arm64 5.15.12+dfsg-3ubuntu1 [1969 kB] 573s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 573s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-server0 arm64 1.22.0-2.1 [34.0 kB] 573s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 574s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgbm1 arm64 24.0.1-1ubuntu1 [43.0 kB] 574s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 574s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-client0 arm64 1.22.0-2.1 [25.6 kB] 574s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 574s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 574s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 574s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 574s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 574s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 574s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 574s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libegl-mesa0 arm64 24.0.1-1ubuntu1 [116 kB] 574s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libegl1 arm64 1.7.0-1 [29.2 kB] 574s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 574s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 574s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 574s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 574s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 574s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 574s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 574s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 577s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 577s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 577s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 577s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 577s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 577s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 577s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libmtdev1 arm64 1.1.6-1build4 [14.4 kB] 577s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom-common all 2.10.0-1 [63.3 kB] 577s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libwacom9 arm64 2.10.0-1 [23.7 kB] 577s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libinput-bin arm64 1.25.0-1 [21.9 kB] 577s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libinput10 arm64 1.25.0-1 [129 kB] 577s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libmd4c0 arm64 0.4.8-1 [41.2 kB] 577s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5dbus5 arm64 5.15.12+dfsg-3ubuntu1 [224 kB] 577s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5network5 arm64 5.15.12+dfsg-3ubuntu1 [741 kB] 577s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 577s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-icccm4 arm64 0.4.1-1.1build2 [11.0 kB] 577s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-util1 arm64 0.4.0-1build2 [11.2 kB] 577s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-image0 arm64 0.4.0-2 [11.1 kB] 577s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-keysyms1 arm64 0.4.0-1build3 [8606 B] 577s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render-util0 arm64 0.3.9-1build3 [10.2 kB] 577s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shape0 arm64 1.15-1 [6106 B] 577s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinerama0 arm64 1.15-1 [5434 B] 577s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xinput0 arm64 1.15-1 [33.5 kB] 577s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xkb1 arm64 1.15-1 [31.7 kB] 577s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1 [13.6 kB] 577s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5gui5 arm64 5.15.12+dfsg-3ubuntu1 [3616 kB] 577s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 577s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 577s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 577s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 577s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5widgets5 arm64 5.15.12+dfsg-3ubuntu1 [2550 kB] 577s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5printsupport5 arm64 5.15.12+dfsg-3ubuntu1 [209 kB] 577s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libqt5svg5 arm64 5.15.12-1 [177 kB] 577s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 577s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxbase3.2-1 arm64 3.2.4+dfsg-3 [860 kB] 577s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 577s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 577s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 577s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 577s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 577s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 578s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 578s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 578s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 578s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 578s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libatspi2.0-0 arm64 2.50.0-1 [78.5 kB] 578s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libatk-bridge2.0-0 arm64 2.50.0-1 [65.0 kB] 578s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo-gobject2 arm64 1.18.0-1 [127 kB] 578s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 578s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libcolord2 arm64 1.4.7-1 [148 kB] 578s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libepoxy0 arm64 1.5.10-1 [247 kB] 578s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-cursor0 arm64 1.22.0-2.1 [10.2 kB] 578s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libwayland-egl1 arm64 1.22.0-2.1 [5498 B] 578s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 578s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 578s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 578s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 578s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 578s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libdconf1 arm64 0.40.0-4 [39.2 kB] 578s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-service arm64 0.40.0-4 [26.1 kB] 578s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 dconf-gsettings-backend arm64 0.40.0-4 [21.6 kB] 578s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB] 578s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk-3-0 arm64 3.24.40-2ubuntu1 [2867 kB] 579s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libnotify4 arm64 0.8.3-1 [25.3 kB] 579s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 579s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libwxgtk3.2-1 arm64 3.2.4+dfsg-3 [4341 kB] 579s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot-qt arm64 5.4.4+dfsg1-2build1 [1109 kB] 579s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot all 5.4.4+dfsg1-2build1 [3584 B] 579s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 atac arm64 0~20150903+r2013-8build4 [358 kB] 579s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 kmer all 0~20150903+r2013-8build4 [3840 B] 579s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libmeryl-dev arm64 0~20150903+r2013-8build4 [61.4 kB] 579s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmer-dev arm64 0~20150903+r2013-8build4 [224 kB] 579s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 kmer-examples all 0~20150903+r2013-8build4 [2351 kB] 583s Fetched 67.5 MB in 9s (7588 kB/s) 583s Selecting previously unselected package meryl. 583s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75414 files and directories currently installed.) 584s Preparing to unpack .../000-meryl_0~20150903+r2013-8build4_arm64.deb ... 584s Unpacking meryl (0~20150903+r2013-8build4) ... 584s Selecting previously unselected package leaff. 584s Preparing to unpack .../001-leaff_0~20150903+r2013-8build4_arm64.deb ... 584s Unpacking leaff (0~20150903+r2013-8build4) ... 584s Selecting previously unselected package sim4db. 584s Preparing to unpack .../002-sim4db_0~20150903+r2013-8build4_arm64.deb ... 584s Unpacking sim4db (0~20150903+r2013-8build4) ... 584s Selecting previously unselected package libfile-which-perl. 584s Preparing to unpack .../003-libfile-which-perl_1.27-2_all.deb ... 584s Unpacking libfile-which-perl (1.27-2) ... 584s Selecting previously unselected package aglfn. 584s Preparing to unpack .../004-aglfn_1.7+git20191031.4036a9c-2_all.deb ... 584s Unpacking aglfn (1.7+git20191031.4036a9c-2) ... 584s Selecting previously unselected package gnuplot-data. 584s Preparing to unpack .../005-gnuplot-data_5.4.4+dfsg1-2build1_all.deb ... 584s Unpacking gnuplot-data (5.4.4+dfsg1-2build1) ... 584s Selecting previously unselected package fonts-dejavu-mono. 584s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ... 584s Unpacking fonts-dejavu-mono (2.37-8) ... 584s Selecting previously unselected package fonts-dejavu-core. 584s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ... 585s Unpacking fonts-dejavu-core (2.37-8) ... 585s Selecting previously unselected package fontconfig-config. 585s Preparing to unpack .../008-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 585s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 586s Selecting previously unselected package libfontconfig1:arm64. 586s Preparing to unpack .../009-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 586s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 586s Selecting previously unselected package libpixman-1-0:arm64. 586s Preparing to unpack .../010-libpixman-1-0_0.42.2-1_arm64.deb ... 586s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 586s Selecting previously unselected package libxcb-render0:arm64. 586s Preparing to unpack .../011-libxcb-render0_1.15-1_arm64.deb ... 586s Unpacking libxcb-render0:arm64 (1.15-1) ... 586s Selecting previously unselected package libxcb-shm0:arm64. 586s Preparing to unpack .../012-libxcb-shm0_1.15-1_arm64.deb ... 586s Unpacking libxcb-shm0:arm64 (1.15-1) ... 586s Selecting previously unselected package libxrender1:arm64. 586s Preparing to unpack .../013-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 586s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 586s Selecting previously unselected package libcairo2:arm64. 586s Preparing to unpack .../014-libcairo2_1.18.0-1_arm64.deb ... 586s Unpacking libcairo2:arm64 (1.18.0-1) ... 586s Selecting previously unselected package libjpeg-turbo8:arm64. 586s Preparing to unpack .../015-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 586s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 587s Selecting previously unselected package libjpeg8:arm64. 587s Preparing to unpack .../016-libjpeg8_8c-2ubuntu11_arm64.deb ... 587s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 587s Selecting previously unselected package libdeflate0:arm64. 587s Preparing to unpack .../017-libdeflate0_1.19-1_arm64.deb ... 587s Unpacking libdeflate0:arm64 (1.19-1) ... 587s Selecting previously unselected package libjbig0:arm64. 587s Preparing to unpack .../018-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 587s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 587s Selecting previously unselected package liblerc4:arm64. 587s Preparing to unpack .../019-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 587s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 587s Selecting previously unselected package libsharpyuv0:arm64. 587s Preparing to unpack .../020-libsharpyuv0_1.3.2-0.4_arm64.deb ... 587s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 587s Selecting previously unselected package libwebp7:arm64. 587s Preparing to unpack .../021-libwebp7_1.3.2-0.4_arm64.deb ... 587s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 587s Selecting previously unselected package libtiff6:arm64. 587s Preparing to unpack .../022-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 587s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 588s Selecting previously unselected package libxpm4:arm64. 588s Preparing to unpack .../023-libxpm4_1%3a3.5.17-1_arm64.deb ... 588s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 588s Selecting previously unselected package libgd3:arm64. 588s Preparing to unpack .../024-libgd3_2.3.3-9ubuntu1_arm64.deb ... 588s Unpacking libgd3:arm64 (2.3.3-9ubuntu1) ... 588s Selecting previously unselected package liblua5.4-0:arm64. 588s Preparing to unpack .../025-liblua5.4-0_5.4.6-3_arm64.deb ... 588s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 588s Selecting previously unselected package fontconfig. 588s Preparing to unpack .../026-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 588s Unpacking fontconfig (2.15.0-1ubuntu1) ... 588s Selecting previously unselected package libgraphite2-3:arm64. 588s Preparing to unpack .../027-libgraphite2-3_1.3.14-2_arm64.deb ... 588s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 588s Selecting previously unselected package libharfbuzz0b:arm64. 589s Preparing to unpack .../028-libharfbuzz0b_8.3.0-2_arm64.deb ... 589s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 589s Selecting previously unselected package libthai-data. 589s Preparing to unpack .../029-libthai-data_0.1.29-2_all.deb ... 589s Unpacking libthai-data (0.1.29-2) ... 591s Selecting previously unselected package libdatrie1:arm64. 591s Preparing to unpack .../030-libdatrie1_0.2.13-3_arm64.deb ... 591s Unpacking libdatrie1:arm64 (0.2.13-3) ... 591s Selecting previously unselected package libthai0:arm64. 591s Preparing to unpack .../031-libthai0_0.1.29-2_arm64.deb ... 591s Unpacking libthai0:arm64 (0.1.29-2) ... 591s Selecting previously unselected package libpango-1.0-0:arm64. 591s Preparing to unpack .../032-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 591s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 591s Selecting previously unselected package libpangoft2-1.0-0:arm64. 591s Preparing to unpack .../033-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 591s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 591s Selecting previously unselected package libpangocairo-1.0-0:arm64. 591s Preparing to unpack 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.../039-libwayland-server0_1.22.0-2.1_arm64.deb ... 591s Unpacking libwayland-server0:arm64 (1.22.0-2.1) ... 591s Selecting previously unselected package libxcb-randr0:arm64. 591s Preparing to unpack .../040-libxcb-randr0_1.15-1_arm64.deb ... 591s Unpacking libxcb-randr0:arm64 (1.15-1) ... 591s Selecting previously unselected package libgbm1:arm64. 591s Preparing to unpack .../041-libgbm1_24.0.1-1ubuntu1_arm64.deb ... 591s Unpacking libgbm1:arm64 (24.0.1-1ubuntu1) ... 591s Selecting previously unselected package libglapi-mesa:arm64. 591s Preparing to unpack .../042-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 591s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 591s Selecting previously unselected package libwayland-client0:arm64. 591s Preparing to unpack .../043-libwayland-client0_1.22.0-2.1_arm64.deb ... 591s Unpacking libwayland-client0:arm64 (1.22.0-2.1) ... 591s Selecting previously unselected package libx11-xcb1:arm64. 591s Preparing to unpack .../044-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 591s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 591s Selecting previously unselected package libxcb-dri2-0:arm64. 592s Preparing to unpack .../045-libxcb-dri2-0_1.15-1_arm64.deb ... 592s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 592s Selecting previously unselected package libxcb-dri3-0:arm64. 592s Preparing to unpack .../046-libxcb-dri3-0_1.15-1_arm64.deb ... 592s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 592s Selecting previously unselected package libxcb-present0:arm64. 592s Preparing to unpack .../047-libxcb-present0_1.15-1_arm64.deb ... 592s Unpacking libxcb-present0:arm64 (1.15-1) ... 592s Selecting previously unselected package libxcb-sync1:arm64. 592s Preparing to unpack .../048-libxcb-sync1_1.15-1_arm64.deb ... 592s Unpacking libxcb-sync1:arm64 (1.15-1) ... 592s Selecting previously unselected package libxcb-xfixes0:arm64. 592s Preparing to unpack .../049-libxcb-xfixes0_1.15-1_arm64.deb ... 592s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 592s Selecting previously unselected package libxshmfence1:arm64. 592s Preparing to unpack .../050-libxshmfence1_1.3-1build4_arm64.deb ... 592s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 592s Selecting previously unselected package libegl-mesa0:arm64. 592s Preparing to unpack .../051-libegl-mesa0_24.0.1-1ubuntu1_arm64.deb ... 592s Unpacking libegl-mesa0:arm64 (24.0.1-1ubuntu1) ... 592s Selecting previously unselected package libegl1:arm64. 592s Preparing to unpack .../052-libegl1_1.7.0-1_arm64.deb ... 592s Unpacking libegl1:arm64 (1.7.0-1) ... 593s Selecting previously unselected package libxcb-glx0:arm64. 593s Preparing to unpack .../053-libxcb-glx0_1.15-1_arm64.deb ... 593s Unpacking libxcb-glx0:arm64 (1.15-1) ... 593s Selecting previously unselected package libxfixes3:arm64. 593s Preparing to unpack .../054-libxfixes3_1%3a6.0.0-2_arm64.deb ... 593s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 593s Selecting previously unselected package libxxf86vm1:arm64. 593s Preparing to unpack .../055-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 593s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 593s Selecting previously unselected package libvulkan1:arm64. 593s Preparing to unpack .../056-libvulkan1_1.3.275.0-1_arm64.deb ... 593s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 593s Selecting previously unselected package libdrm-amdgpu1:arm64. 593s Preparing to unpack .../057-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 593s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 593s Selecting previously unselected package libdrm-nouveau2:arm64. 593s Preparing to unpack .../058-libdrm-nouveau2_2.4.120-2_arm64.deb ... 593s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 593s Selecting previously unselected package libdrm-radeon1:arm64. 594s Preparing to unpack .../059-libdrm-radeon1_2.4.120-2_arm64.deb ... 594s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 594s Selecting previously unselected package libllvm17:arm64. 594s Preparing to unpack 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(1:7.7+23ubuntu2) ... 605s Selecting previously unselected package libice6:arm64. 605s Preparing to unpack .../066-libice6_2%3a1.0.10-1build2_arm64.deb ... 605s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 605s Selecting previously unselected package libmtdev1:arm64. 605s Preparing to unpack .../067-libmtdev1_1.1.6-1build4_arm64.deb ... 605s Unpacking libmtdev1:arm64 (1.1.6-1build4) ... 605s Selecting previously unselected package libwacom-common. 605s Preparing to unpack .../068-libwacom-common_2.10.0-1_all.deb ... 605s Unpacking libwacom-common (2.10.0-1) ... 605s Selecting previously unselected package libwacom9:arm64. 605s Preparing to unpack .../069-libwacom9_2.10.0-1_arm64.deb ... 605s Unpacking libwacom9:arm64 (2.10.0-1) ... 605s Selecting previously unselected package libinput-bin. 605s Preparing to unpack .../070-libinput-bin_1.25.0-1_arm64.deb ... 605s Unpacking libinput-bin (1.25.0-1) ... 605s Selecting previously unselected package libinput10:arm64. 605s Preparing to unpack .../071-libinput10_1.25.0-1_arm64.deb ... 605s Unpacking libinput10:arm64 (1.25.0-1) ... 605s Selecting previously unselected package libmd4c0:arm64. 605s Preparing to unpack .../072-libmd4c0_0.4.8-1_arm64.deb ... 605s Unpacking libmd4c0:arm64 (0.4.8-1) ... 605s Selecting previously unselected package libqt5dbus5:arm64. 605s Preparing to unpack .../073-libqt5dbus5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 605s Unpacking libqt5dbus5:arm64 (5.15.12+dfsg-3ubuntu1) ... 605s Selecting previously unselected package libqt5network5:arm64. 605s Preparing to unpack .../074-libqt5network5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 605s Unpacking libqt5network5:arm64 (5.15.12+dfsg-3ubuntu1) ... 606s Selecting previously unselected package libsm6:arm64. 606s Preparing to unpack .../075-libsm6_2%3a1.2.3-1build2_arm64.deb ... 606s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 606s Selecting previously unselected package libxcb-icccm4:arm64. 606s Preparing to unpack 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.../081-libxcb-shape0_1.15-1_arm64.deb ... 608s Unpacking libxcb-shape0:arm64 (1.15-1) ... 608s Selecting previously unselected package libxcb-xinerama0:arm64. 608s Preparing to unpack .../082-libxcb-xinerama0_1.15-1_arm64.deb ... 608s Unpacking libxcb-xinerama0:arm64 (1.15-1) ... 608s Selecting previously unselected package libxcb-xinput0:arm64. 608s Preparing to unpack .../083-libxcb-xinput0_1.15-1_arm64.deb ... 608s Unpacking libxcb-xinput0:arm64 (1.15-1) ... 608s Selecting previously unselected package libxcb-xkb1:arm64. 608s Preparing to unpack .../084-libxcb-xkb1_1.15-1_arm64.deb ... 608s Unpacking libxcb-xkb1:arm64 (1.15-1) ... 608s Selecting previously unselected package libxkbcommon-x11-0:arm64. 608s Preparing to unpack .../085-libxkbcommon-x11-0_1.6.0-1_arm64.deb ... 608s Unpacking libxkbcommon-x11-0:arm64 (1.6.0-1) ... 608s Selecting previously unselected package libqt5gui5:arm64. 608s Preparing to unpack .../086-libqt5gui5_5.15.12+dfsg-3ubuntu1_arm64.deb ... 608s Unpacking libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ... 609s Selecting previously unselected package libavahi-common-data:arm64. 609s Preparing to unpack .../087-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 609s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 609s Selecting previously unselected package libavahi-common3:arm64. 609s Preparing to unpack .../088-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 609s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 609s Selecting previously unselected package libavahi-client3:arm64. 609s Preparing to unpack .../089-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 609s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 612s Selecting previously unselected package libcups2:arm64. 612s Preparing to unpack .../090-libcups2_2.4.6-0ubuntu3_arm64.deb ... 612s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 612s Selecting previously unselected package libqt5widgets5:arm64. 612s Preparing to unpack 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612s Preparing to unpack .../096-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 612s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 612s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 612s Preparing to unpack .../097-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 612s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 612s Selecting previously unselected package gtk-update-icon-cache. 612s Preparing to unpack .../098-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 612s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 612s Selecting previously unselected package hicolor-icon-theme. 612s Preparing to unpack .../099-hicolor-icon-theme_0.17-2_all.deb ... 612s Unpacking hicolor-icon-theme (0.17-2) ... 612s Selecting previously unselected package humanity-icon-theme. 612s Preparing to unpack .../100-humanity-icon-theme_0.6.16_all.deb ... 612s Unpacking humanity-icon-theme (0.6.16) ... 621s Selecting previously unselected package ubuntu-mono. 621s Preparing to unpack .../101-ubuntu-mono_24.04-0ubuntu1_all.deb ... 621s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 624s Selecting previously unselected package adwaita-icon-theme. 624s Preparing to unpack .../102-adwaita-icon-theme_46~rc-1_all.deb ... 624s Unpacking adwaita-icon-theme (46~rc-1) ... 631s Selecting previously unselected package at-spi2-common. 631s Preparing to unpack .../103-at-spi2-common_2.50.0-1_all.deb ... 631s Unpacking at-spi2-common (2.50.0-1) ... 631s Selecting previously unselected package libatk1.0-0:arm64. 631s Preparing to unpack .../104-libatk1.0-0_2.50.0-1_arm64.deb ... 631s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 631s Selecting previously unselected package libxi6:arm64. 631s Preparing to unpack .../105-libxi6_2%3a1.8.1-1_arm64.deb ... 631s Unpacking libxi6:arm64 (2:1.8.1-1) ... 631s Selecting previously unselected package libatspi2.0-0:arm64. 631s Preparing to unpack .../106-libatspi2.0-0_2.50.0-1_arm64.deb ... 631s Unpacking libatspi2.0-0:arm64 (2.50.0-1) ... 631s Selecting previously unselected package libatk-bridge2.0-0:arm64. 631s Preparing to unpack .../107-libatk-bridge2.0-0_2.50.0-1_arm64.deb ... 631s Unpacking libatk-bridge2.0-0:arm64 (2.50.0-1) ... 631s Selecting previously unselected package libcairo-gobject2:arm64. 631s Preparing to unpack .../108-libcairo-gobject2_1.18.0-1_arm64.deb ... 631s Unpacking libcairo-gobject2:arm64 (1.18.0-1) ... 631s Selecting previously unselected package liblcms2-2:arm64. 631s Preparing to unpack .../109-liblcms2-2_2.14-2_arm64.deb ... 631s Unpacking liblcms2-2:arm64 (2.14-2) ... 631s Selecting previously unselected package libcolord2:arm64. 631s Preparing to unpack .../110-libcolord2_1.4.7-1_arm64.deb ... 631s Unpacking libcolord2:arm64 (1.4.7-1) ... 631s Selecting previously unselected package libepoxy0:arm64. 631s Preparing to unpack .../111-libepoxy0_1.5.10-1_arm64.deb ... 631s Unpacking libepoxy0:arm64 (1.5.10-1) ... 631s Selecting previously unselected package libwayland-cursor0:arm64. 631s Preparing to unpack .../112-libwayland-cursor0_1.22.0-2.1_arm64.deb ... 631s Unpacking libwayland-cursor0:arm64 (1.22.0-2.1) ... 631s Selecting previously unselected package libwayland-egl1:arm64. 631s Preparing to unpack .../113-libwayland-egl1_1.22.0-2.1_arm64.deb ... 631s Unpacking libwayland-egl1:arm64 (1.22.0-2.1) ... 631s Selecting previously unselected package libxcomposite1:arm64. 631s Preparing to unpack .../114-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 631s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 631s Selecting previously unselected package libxcursor1:arm64. 631s Preparing to unpack .../115-libxcursor1_1%3a1.2.1-1_arm64.deb ... 631s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 631s Selecting previously unselected package libxdamage1:arm64. 631s Preparing to unpack .../116-libxdamage1_1%3a1.1.6-1_arm64.deb ... 631s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 631s Selecting previously unselected package libxinerama1:arm64. 631s Preparing to unpack .../117-libxinerama1_2%3a1.1.4-3_arm64.deb ... 631s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 631s Selecting previously unselected package libxrandr2:arm64. 631s Preparing to unpack .../118-libxrandr2_2%3a1.5.2-2_arm64.deb ... 631s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 631s Selecting previously unselected package libdconf1:arm64. 631s Preparing to unpack .../119-libdconf1_0.40.0-4_arm64.deb ... 631s Unpacking libdconf1:arm64 (0.40.0-4) ... 631s Selecting previously unselected package dconf-service. 631s Preparing to unpack .../120-dconf-service_0.40.0-4_arm64.deb ... 631s Unpacking dconf-service (0.40.0-4) ... 631s Selecting previously unselected package dconf-gsettings-backend:arm64. 632s Preparing to unpack .../121-dconf-gsettings-backend_0.40.0-4_arm64.deb ... 632s Unpacking dconf-gsettings-backend:arm64 (0.40.0-4) ... 632s Selecting previously unselected package libgtk-3-common. 633s Preparing to unpack .../122-libgtk-3-common_3.24.40-2ubuntu1_all.deb 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dconf-gsettings-backend:arm64 (0.40.0-4) ... 642s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 642s Setting up libcairo2:arm64 (1.18.0-1) ... 642s Setting up libgl1:arm64 (1.7.0-1) ... 642s Setting up libnotify4:arm64 (0.8.3-1) ... 642s Setting up libgd3:arm64 (2.3.3-9ubuntu1) ... 642s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 642s Setting up libcairo-gobject2:arm64 (1.18.0-1) ... 642s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 642s Setting up libgtk-3-common (3.24.40-2ubuntu1) ... 642s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 642s Setting up libqt5gui5:arm64 (5.15.12+dfsg-3ubuntu1) ... 642s Setting up libqt5widgets5:arm64 (5.15.12+dfsg-3ubuntu1) ... 642s Setting up libqt5printsupport5:arm64 (5.15.12+dfsg-3ubuntu1) ... 642s Setting up libqt5svg5:arm64 (5.15.12-1) ... 642s Setting up adwaita-icon-theme (46~rc-1) ... 642s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 642s Setting up humanity-icon-theme (0.6.16) ... 643s Setting up ubuntu-mono (24.04-0ubuntu1) ... 643s Processing triggers for man-db (2.12.0-3) ... 645s Processing triggers for udev (255.2-3ubuntu2) ... 648s Processing triggers for libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 648s Setting up libgtk-3-0:arm64 (3.24.40-2ubuntu1) ... 648s Processing triggers for libc-bin (2.39-0ubuntu2) ... 648s Setting up libwxgtk3.2-1:arm64 (3.2.4+dfsg-3) ... 648s Setting up gnuplot-qt (5.4.4+dfsg1-2build1) ... 648s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode 648s Setting up gnuplot (5.4.4+dfsg1-2build1) ... 648s Setting up atac (0~20150903+r2013-8build4) ... 649s Setting up kmer (0~20150903+r2013-8build4) ... 649s Setting up autopkgtest-satdep (0) ... 649s Processing triggers for libc-bin (2.39-0ubuntu2) ... 675s (Reading database ... 89894 files and directories currently installed.) 675s Removing autopkgtest-satdep (0) ... 679s autopkgtest [22:14:06]: test sim4db-unit-test: [----------------------- 679s Testing sim4 for intra-species alignment... 679s 689s Testing sim4cc for inter-species alignment... 689s 718s RESULTS: OK 718s 718s autopkgtest [22:14:44]: test sim4db-unit-test: -----------------------] 719s autopkgtest [22:14:46]: test sim4db-unit-test: - - - - - - - - - - results - - - - - - - - - - 719s sim4db-unit-test PASS 720s autopkgtest [22:14:47]: test atac-unit-test: preparing testbed 726s Reading package lists... 731s Building dependency tree... 731s Reading state information... 731s Starting pkgProblemResolver with broken count: 0 731s Starting 2 pkgProblemResolver with broken count: 0 731s Done 738s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 738s 1 not fully installed or removed. 738s After this operation, 0 B of additional disk space will be used. 738s Setting up autopkgtest-satdep (0) ... 745s (Reading database ... 89894 files and directories currently installed.) 745s Removing autopkgtest-satdep (0) ... 750s autopkgtest [22:15:17]: test atac-unit-test: [----------------------- 751s Rewriting '/tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/GCF_000195855.1_ASM19585v1_genomic.fna' to '/tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.fasta', removing newlines. 751s Rewriting '/tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/GCF_000195955.2_ASM19595v2_genomic.fna' to '/tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Tuber.fasta', removing newlines. 751s 751s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.fasta -o /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.ms20 751s 754s 754s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.ms20 -o /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.ms20.le1 754s 755s 755s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Tuber.fasta -o /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Tuber.ms20 755s 761s 761s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Tuber.ms20 -o /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Tuber.ms20.le1 761s 762s Finding the min count between Lepr.ms20.le1 and Tuber.ms20.le1. 762s 762s /usr/bin/meryl -M min -s /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.ms20.le1 -s /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Tuber.ms20.le1 -o /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 762s 763s includeSize is proportional to 1048608. 763s excludeSize is proportional to 15724920. 763s /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 has 33265 mers. 763s /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.ms20 has 3268184 mers. 763s includeSize is exactly 33265 mers. 763s excludeSize is exactly 3234919 mers. 763s 763s /usr/bin/../lib/atac/bin/seatac -verbose -mersize 20 -minlength 20 -maxgap 0 -numthreads 4 -table /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.fasta -stream /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Tuber.fasta -only /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.include -output /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches -filtername /usr/bin/../lib/atac/lib/filter-heavychains.so -filteropts "-1 Lepr -2 Tuber -S 100 -J 100000" > /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber-000.out 2>&1 763s 767s 767s /usr/bin/../lib/atac/bin/matchExtender /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.header /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches > /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 767s 772s WARNING: TMPDIR not set, defaulting to '/tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results'. 772s RESULTS: OK 772s 772s 772s python3 /usr/bin/../lib/atac/bin/AtacDriver.py /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 772s 772s Read checkpoint in 0 seconds. 772s Creating /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Lepr.fasta.idxStore 772s Creating /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/meryldir/Tuber.fasta.idxStore 772s We need to make the raw matches. 772s runName = /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 772s 772s Keep step=0 772s At step=0 772s Time elapsed=0.0027685165405273438 772s At uniqueFilter, step=1 772s Time elapsed=0.0034055709838867188 772s Running UniqueFilter 772s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/tmps7o01eav > /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/tmpprdl0p16 772s time elapsed is 0.010046958923339844 772s time elapsed is 0.0004341602325439453 772s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/tmp0albotr8 > /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/tmp0pih7pnk 772s time elapsed is 0.01644110679626465 772s time elapsed is 0.0002846717834472656 772s At filterByMatchLength, step=2 772s Time elapsed=0.781282901763916 772s Running filterByMatchLength 772s At trimMatchOverlaps, step=3 772s Time elapsed=0.792471170425415 772s Start trimming for bp one-to-one-ness 772s trimMatchOverlapsInX: 772s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 772s 772s trimMatchOverlapsInY: 772s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 772s 772s Finished trimming for bp one-to-one-ness 772s At formPerfectRuns, step=4 772s Time elapsed=0.9530575275421143 772s from /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim making /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 772s formPerfectRuns step=0 772s formPerfectRuns step=1 772s formPerfectRuns step=2 772s formPerfectRuns step=3 772s At onlyKeepLongRuns, step=5 772s Time elapsed=1.1033029556274414 772s from /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 making /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100 772s At formPerfectRuns, step=6 772s Time elapsed=1.1067612171173096 772s Heal the perfect runs 772s formPerfectRuns step=0 772s formPerfectRuns step=1 772s formPerfectRuns step=2 772s formPerfectRuns step=3 772s At squeezeIntraRunGaps, step=7 772s Time elapsed=1.2504794597625732 772s from /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr to /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr.sq 772s countLines 0 inter_run_gap_count 0 closed_gap_count 0 squeezed 0 x_len 0 y_len 0 x_nonACGT 0 y_nonACGT 0 772s theIsolatedSNPcount = 0 772s completefillednotXY = 0 772s completefilledXnotY = 0 772s completefilledYnotX = 0 772s completefilledXandY = 0 772s At TrimMatchOverlaps, step=8 772s Time elapsed=1.2587685585021973 772s Start trimming for bp one-to-one-ness 772s trimMatchOverlapsInX: 772s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 772s 772s trimMatchOverlapsInY: 772s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 772s 772s Finished trimming for bp one-to-one-ness 772s At RunsAsMatches, step=9 772s Time elapsed=1.397672176361084 772s At fillIntraRunGaps, step=10 772s Time elapsed=1.3991270065307617 772s fill the intrarun gaps 772s begin 772s countLines=0 772s countLines 0 inter_run_gap_count 0 772s At TrimMatchOverlaps, step=11 772s Time elapsed=1.401745319366455 772s trim the overlaps 772s trimMatchOverlapsInX: 772s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 772s 772s trimMatchOverlapsInY: 772s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 772s 772s Ran in 1 seconds. 772s 772s /usr/bin/../lib/atac/bin/correctGaps -m /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.atac -l /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.log > /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.atac 772s 772s 772s cd /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -1 -f /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.ref=Lepr.clumpCost=5000.atac 772s 772s 1 load the matches 772s 2 sort the matches 772s 3 score the matches 772s 4 mark clumps 772s 5 sort the matches 772s 6 output matches with clumps 772s 772s cd /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -2 -f /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.ref=Tuber.clumpCost=5000.atac 772s 772s 1 load the matches 772s 2 sort the matches 772s 3 score the matches 772s 4 mark clumps 772s 5 sort the matches 772s 6 output matches with clumps 772s 772s /usr/bin/../lib/atac/bin/statsGenerator -a /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.atac -p /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/stats/LeprvsTuber -g A > /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/stats/LeprvsTuber.stats 772s 772s 772s perl /usr/bin/../lib/atac/bin/makeplot.pl u /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/stats/LeprvsTuber.matches.png 772s 772s 772s replot 772s ^ 772s "/tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/stats/LeprvsTuber.matches.gp" line 24: no previous plot 772s 772s 772s perl /usr/bin/../lib/atac/bin/makeplot.pl r /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/stats/LeprvsTuber.runs.png 772s 772s 772s replot 772s ^ 772s "/tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/stats/LeprvsTuber.runs.gp" line 24: no previous plot 772s 772s 772s Finished! Output is: 772s matches and runs -- /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.atac 772s clumps -- /tmp/autopkgtest.nPzTKJ/autopkgtest_tmp/results/LeprvsTuber.*clump*.atac 772s autopkgtest [22:15:38]: test atac-unit-test: -----------------------] 773s autopkgtest [22:15:40]: test atac-unit-test: - - - - - - - - - - results - - - - - - - - - - 773s atac-unit-test PASS 774s autopkgtest [22:15:41]: @@@@@@@@@@@@@@@@@@@@ summary 774s sim4db-unit-test PASS 774s atac-unit-test PASS 797s Creating nova instance adt-noble-arm64-kmer-20240309-220246-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240308.img (UUID 818adddc-cacc-4dcd-be3d-ec9a61f3956b)...