0s autopkgtest [02:02:47]: starting date: 2024-03-18 0s autopkgtest [02:02:47]: git checkout: 399018f5 lib/adt_testbed.py: Fix supression of warning messages from apt 0s autopkgtest [02:02:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pp5vu3wo/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade kaptive --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-5.secgroup --name adt-noble-arm64-kaptive-20240318-020247-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 88s autopkgtest [02:04:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 89s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 89s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 89s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 89s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 89s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3710 kB] 90s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [654 kB] 90s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 90s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 90s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 90s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4065 kB] 90s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 90s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.3 kB] 90s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 91s Fetched 9189 kB in 2s (5480 kB/s) 92s Reading package lists... 94s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 97s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 98s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s Calculating upgrade... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s autopkgtest [02:04:28]: testbed dpkg architecture: arm64 102s autopkgtest [02:04:29]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 102s autopkgtest [02:04:29]: @@@@@@@@@@@@@@@@@@@@ apt-source kaptive 104s Get:1 http://ftpmaster.internal/ubuntu noble/universe kaptive 2.0.8-1 (dsc) [2324 B] 104s Get:2 http://ftpmaster.internal/ubuntu noble/universe kaptive 2.0.8-1 (tar) [15.3 MB] 104s Get:3 http://ftpmaster.internal/ubuntu noble/universe kaptive 2.0.8-1 (diff) [6764 B] 105s gpgv: Signature made Wed Dec 27 17:13:57 2023 UTC 105s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 105s gpgv: issuer "emollier@debian.org" 105s gpgv: Can't check signature: No public key 105s dpkg-source: warning: cannot verify inline signature for ./kaptive_2.0.8-1.dsc: no acceptable signature found 105s autopkgtest [02:04:32]: testing package kaptive version 2.0.8-1 105s autopkgtest [02:04:32]: build not needed 108s autopkgtest [02:04:35]: test run-unit-test: preparing testbed 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 110s Starting 2 pkgProblemResolver with broken count: 0 110s Done 111s Done 111s Starting pkgProblemResolver with broken count: 0 111s Starting 2 pkgProblemResolver with broken count: 0 111s Done 111s The following additional packages will be installed: 111s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 111s fonts-urw-base35 kaptive kaptive-data kaptive-example libblas3 libcairo2 111s libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 111s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 111s liblcms2-2 liblerc4 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 111s libopenjp2-7 libpixman-1-0 libpython3.11-minimal libpython3.11-stdlib 111s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 111s libxcb-render0 libxcb-shm0 libxrender1 ncbi-blast+ ncbi-data 111s python3-biopython python3-cairo python3-freetype python3-numpy python3-pil 111s python3-reportlab python3-rlpycairo python3.11 python3.11-minimal sgml-base 111s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 111s Suggested packages: 111s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 111s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 111s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 111s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 111s gcc gfortran python3-dev python3-pytest python-pil-doc pdf-viewer 111s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 111s python3.11-venv python3.11-doc binfmt-support sgml-base-doc debhelper 111s Recommended packages: 111s python-biopython-doc python3-olefile 111s The following NEW packages will be installed: 111s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 111s fonts-urw-base35 kaptive kaptive-data kaptive-example libblas3 libcairo2 111s libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 111s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 111s liblcms2-2 liblerc4 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 111s libopenjp2-7 libpixman-1-0 libpython3.11-minimal libpython3.11-stdlib 111s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 111s libxcb-render0 libxcb-shm0 libxrender1 ncbi-blast+ ncbi-data 111s python3-biopython python3-cairo python3-freetype python3-numpy python3-pil 111s python3-reportlab python3-rlpycairo python3.11 python3.11-minimal sgml-base 111s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 112s 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. 112s 1 not fully installed or removed. 112s Need to get 62.8 MB of archives. 112s After this operation, 225 MB of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 112s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 112s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 113s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 113s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 113s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 113s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 113s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 113s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] 113s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 113s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 113s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 113s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 113s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 113s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 113s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] 113s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 113s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 113s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 113s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 113s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 113s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 113s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 113s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 113s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB] 113s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 113s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 113s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.8-1 [13.9 kB] 113s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 113s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 113s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-utils arm64 1:7.7+6build2 [93.6 kB] 113s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 114s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 114s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 114s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 114s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 114s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 114s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 114s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 114s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2 [153 kB] 114s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] 114s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 114s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-extra all 2.37-8 [1947 kB] 114s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-1 [683 kB] 114s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB] 114s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB] 114s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 114s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.81+dfsg-3 [1664 kB] 114s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] 114s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libmbedcrypto7t64 arm64 2.28.7-1.1ubuntu1 [207 kB] 114s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libmbedx509-1t64 arm64 2.28.7-1.1ubuntu1 [47.2 kB] 114s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libmbedtls14t64 arm64 2.28.7-1.1ubuntu1 [82.2 kB] 114s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 ncbi-blast+ arm64 2.12.0+ds-4build1 [12.1 MB] 115s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 kaptive all 2.0.8-1 [28.1 kB] 115s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 kaptive-data all 2.0.8-1 [5432 kB] 115s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 kaptive-example all 2.0.8-1 [6474 kB] 116s Fetched 62.8 MB in 4s (17.5 MB/s) 116s Selecting previously unselected package libpython3.11-minimal:arm64. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 116s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ... 116s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 116s Selecting previously unselected package python3.11-minimal. 116s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ... 116s Unpacking python3.11-minimal (3.11.8-1) ... 116s Selecting previously unselected package libpython3.11-stdlib:arm64. 116s Preparing to unpack .../02-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 116s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 116s Selecting previously unselected package python3.11. 116s Preparing to unpack .../03-python3.11_3.11.8-1_arm64.deb ... 116s Unpacking python3.11 (3.11.8-1) ... 116s Selecting previously unselected package libblas3:arm64. 116s Preparing to unpack .../04-libblas3_3.12.0-3_arm64.deb ... 116s Unpacking libblas3:arm64 (3.12.0-3) ... 116s Selecting previously unselected package libgfortran5:arm64. 116s Preparing to unpack .../05-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 116s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 116s Selecting previously unselected package liblapack3:arm64. 116s Preparing to unpack .../06-liblapack3_3.12.0-3_arm64.deb ... 116s Unpacking liblapack3:arm64 (3.12.0-3) ... 116s Selecting previously unselected package python3-numpy. 116s Preparing to unpack .../07-python3-numpy_1%3a1.24.2-2_arm64.deb ... 116s Unpacking python3-numpy (1:1.24.2-2) ... 116s Selecting previously unselected package libgomp1:arm64. 116s Preparing to unpack .../08-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 116s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 116s Selecting previously unselected package libimagequant0:arm64. 116s Preparing to unpack .../09-libimagequant0_2.18.0-1_arm64.deb ... 116s Unpacking libimagequant0:arm64 (2.18.0-1) ... 116s Selecting previously unselected package libjpeg-turbo8:arm64. 116s Preparing to unpack .../10-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 116s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 116s Selecting previously unselected package libjpeg8:arm64. 116s Preparing to unpack .../11-libjpeg8_8c-2ubuntu11_arm64.deb ... 116s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 116s Selecting previously unselected package liblcms2-2:arm64. 116s Preparing to unpack .../12-liblcms2-2_2.14-2_arm64.deb ... 116s Unpacking liblcms2-2:arm64 (2.14-2) ... 116s Selecting previously unselected package libopenjp2-7:arm64. 116s Preparing to unpack .../13-libopenjp2-7_2.5.0-2_arm64.deb ... 116s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 116s Selecting previously unselected package libgraphite2-3:arm64. 116s Preparing to unpack .../14-libgraphite2-3_1.3.14-2_arm64.deb ... 116s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 116s Selecting previously unselected package libharfbuzz0b:arm64. 116s Preparing to unpack .../15-libharfbuzz0b_8.3.0-2_arm64.deb ... 116s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 116s Selecting previously unselected package libraqm0:arm64. 116s Preparing to unpack .../16-libraqm0_0.10.1-1_arm64.deb ... 116s Unpacking libraqm0:arm64 (0.10.1-1) ... 116s Selecting previously unselected package libdeflate0:arm64. 116s Preparing to unpack .../17-libdeflate0_1.19-1_arm64.deb ... 116s Unpacking libdeflate0:arm64 (1.19-1) ... 116s Selecting previously unselected package libjbig0:arm64. 117s Preparing to unpack .../18-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 117s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 117s Selecting previously unselected package liblerc4:arm64. 117s Preparing to unpack .../19-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 117s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 117s Selecting previously unselected package libsharpyuv0:arm64. 117s Preparing to unpack .../20-libsharpyuv0_1.3.2-0.4_arm64.deb ... 117s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 117s Selecting previously unselected package libwebp7:arm64. 117s Preparing to unpack .../21-libwebp7_1.3.2-0.4_arm64.deb ... 117s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 117s Selecting previously unselected package libtiff6:arm64. 117s Preparing to unpack .../22-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 117s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 117s Selecting previously unselected package libwebpdemux2:arm64. 117s Preparing to unpack .../23-libwebpdemux2_1.3.2-0.4_arm64.deb ... 117s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ... 117s Selecting previously unselected package libwebpmux3:arm64. 117s Preparing to unpack .../24-libwebpmux3_1.3.2-0.4_arm64.deb ... 117s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ... 117s Selecting previously unselected package python3-pil:arm64. 117s Preparing to unpack .../25-python3-pil_10.2.0-1_arm64.deb ... 117s Unpacking python3-pil:arm64 (10.2.0-1) ... 117s Selecting previously unselected package fonts-dejavu-mono. 117s Preparing to unpack .../26-fonts-dejavu-mono_2.37-8_all.deb ... 117s Unpacking fonts-dejavu-mono (2.37-8) ... 117s Selecting previously unselected package fonts-dejavu-core. 117s Preparing to unpack .../27-fonts-dejavu-core_2.37-8_all.deb ... 117s Unpacking fonts-dejavu-core (2.37-8) ... 117s Selecting previously unselected package libfontenc1:arm64. 117s Preparing to unpack .../28-libfontenc1_1%3a1.1.8-1_arm64.deb ... 117s Unpacking libfontenc1:arm64 (1:1.1.8-1) ... 117s Selecting previously unselected package x11-common. 117s Preparing to unpack .../29-x11-common_1%3a7.7+23ubuntu2_all.deb ... 117s Unpacking x11-common (1:7.7+23ubuntu2) ... 117s Selecting previously unselected package xfonts-encodings. 117s Preparing to unpack .../30-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 117s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 117s Selecting previously unselected package xfonts-utils. 117s Preparing to unpack .../31-xfonts-utils_1%3a7.7+6build2_arm64.deb ... 117s Unpacking xfonts-utils (1:7.7+6build2) ... 117s Selecting previously unselected package fonts-urw-base35. 117s Preparing to unpack .../32-fonts-urw-base35_20200910-8_all.deb ... 117s Unpacking fonts-urw-base35 (20200910-8) ... 117s Selecting previously unselected package fontconfig-config. 117s Preparing to unpack .../33-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 117s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 117s Selecting previously unselected package libfontconfig1:arm64. 117s Preparing to unpack .../34-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 117s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 117s Selecting previously unselected package libpixman-1-0:arm64. 117s Preparing to unpack .../35-libpixman-1-0_0.42.2-1_arm64.deb ... 117s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 117s Selecting previously unselected package libxcb-render0:arm64. 117s Preparing to unpack .../36-libxcb-render0_1.15-1_arm64.deb ... 117s Unpacking libxcb-render0:arm64 (1.15-1) ... 117s Selecting previously unselected package libxcb-shm0:arm64. 117s Preparing to unpack .../37-libxcb-shm0_1.15-1_arm64.deb ... 117s Unpacking libxcb-shm0:arm64 (1.15-1) ... 117s Selecting previously unselected package libxrender1:arm64. 117s Preparing to unpack .../38-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 117s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 117s Selecting previously unselected package libcairo2:arm64. 117s Preparing to unpack .../39-libcairo2_1.18.0-1_arm64.deb ... 117s Unpacking libcairo2:arm64 (1.18.0-1) ... 117s Selecting previously unselected package python3-cairo. 117s Preparing to unpack .../40-python3-cairo_1.25.1-2_arm64.deb ... 117s Unpacking python3-cairo (1.25.1-2) ... 118s Selecting previously unselected package python3-freetype. 118s Preparing to unpack .../41-python3-freetype_2.4.0-1_all.deb ... 118s Unpacking python3-freetype (2.4.0-1) ... 118s Selecting previously unselected package python3-rlpycairo. 118s Preparing to unpack .../42-python3-rlpycairo_0.3.0-3_all.deb ... 118s Unpacking python3-rlpycairo (0.3.0-3) ... 118s Selecting previously unselected package fonts-dejavu-extra. 118s Preparing to unpack .../43-fonts-dejavu-extra_2.37-8_all.deb ... 118s Unpacking fonts-dejavu-extra (2.37-8) ... 118s Selecting previously unselected package python3-reportlab. 118s Preparing to unpack .../44-python3-reportlab_4.1.0-1_all.deb ... 118s Unpacking python3-reportlab (4.1.0-1) ... 118s Selecting previously unselected package sgml-base. 118s Preparing to unpack .../45-sgml-base_1.31_all.deb ... 118s Unpacking sgml-base (1.31) ... 118s Selecting previously unselected package xml-core. 118s Preparing to unpack .../46-xml-core_0.19_all.deb ... 118s Unpacking xml-core (0.19) ... 118s Selecting previously unselected package w3c-sgml-lib. 118s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 118s Unpacking w3c-sgml-lib (1.3-3) ... 118s Selecting previously unselected package python3-biopython. 118s Preparing to unpack .../48-python3-biopython_1.81+dfsg-3_arm64.deb ... 118s Unpacking python3-biopython (1.81+dfsg-3) ... 118s Selecting previously unselected package ncbi-data. 118s Preparing to unpack .../49-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... 118s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... 118s Selecting previously unselected package libmbedcrypto7t64:arm64. 118s Preparing to unpack .../50-libmbedcrypto7t64_2.28.7-1.1ubuntu1_arm64.deb ... 118s Unpacking libmbedcrypto7t64:arm64 (2.28.7-1.1ubuntu1) ... 118s Selecting previously unselected package libmbedx509-1t64:arm64. 118s Preparing to unpack .../51-libmbedx509-1t64_2.28.7-1.1ubuntu1_arm64.deb ... 118s Unpacking libmbedx509-1t64:arm64 (2.28.7-1.1ubuntu1) ... 118s Selecting previously unselected package libmbedtls14t64:arm64. 118s Preparing to unpack .../52-libmbedtls14t64_2.28.7-1.1ubuntu1_arm64.deb ... 118s Unpacking libmbedtls14t64:arm64 (2.28.7-1.1ubuntu1) ... 118s Selecting previously unselected package ncbi-blast+. 118s Preparing to unpack .../53-ncbi-blast+_2.12.0+ds-4build1_arm64.deb ... 118s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ... 118s Selecting previously unselected package kaptive. 118s Preparing to unpack .../54-kaptive_2.0.8-1_all.deb ... 118s Unpacking kaptive (2.0.8-1) ... 118s Selecting previously unselected package kaptive-data. 118s Preparing to unpack .../55-kaptive-data_2.0.8-1_all.deb ... 118s Unpacking kaptive-data (2.0.8-1) ... 119s Selecting previously unselected package kaptive-example. 119s Preparing to unpack .../56-kaptive-example_2.0.8-1_all.deb ... 119s Unpacking kaptive-example (2.0.8-1) ... 119s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 119s Setting up liblcms2-2:arm64 (2.14-2) ... 119s Setting up ncbi-data (6.1.20170106+dfsg1-10) ... 119s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 119s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 119s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 119s Setting up libmbedcrypto7t64:arm64 (2.28.7-1.1ubuntu1) ... 119s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 119s Setting up libxcb-render0:arm64 (1.15-1) ... 119s Setting up x11-common (1:7.7+23ubuntu2) ... 119s Setting up libdeflate0:arm64 (1.19-1) ... 119s Setting up libxcb-shm0:arm64 (1.15-1) ... 119s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 119s Setting up python3-freetype (2.4.0-1) ... 119s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 119s Setting up kaptive-example (2.0.8-1) ... 119s Setting up libfontenc1:arm64 (1:1.1.8-1) ... 119s Setting up libblas3:arm64 (3.12.0-3) ... 119s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 119s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 119s Setting up libimagequant0:arm64 (2.18.0-1) ... 119s Setting up fonts-dejavu-mono (2.37-8) ... 119s Setting up fonts-dejavu-core (2.37-8) ... 119s Setting up kaptive-data (2.0.8-1) ... 119s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 119s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 119s Setting up libwebp7:arm64 (1.3.2-0.4) ... 119s Setting up fonts-dejavu-extra (2.37-8) ... 119s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 119s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 119s Setting up sgml-base (1.31) ... 119s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 119s Setting up libwebpmux3:arm64 (1.3.2-0.4) ... 119s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 119s Setting up python3.11-minimal (3.11.8-1) ... 120s Setting up liblapack3:arm64 (3.12.0-3) ... 120s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 120s Setting up libmbedx509-1t64:arm64 (2.28.7-1.1ubuntu1) ... 120s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 120s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ... 120s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 120s Setting up xfonts-utils (1:7.7+6build2) ... 120s Setting up libraqm0:arm64 (0.10.1-1) ... 120s Setting up libmbedtls14t64:arm64 (2.28.7-1.1ubuntu1) ... 120s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 120s Setting up xml-core (0.19) ... 120s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 120s Setting up python3.11 (3.11.8-1) ... 121s Setting up fonts-urw-base35 (20200910-8) ... 121s Setting up libcairo2:arm64 (1.18.0-1) ... 121s Setting up ncbi-blast+ (2.12.0+ds-4build1) ... 121s Setting up python3-pil:arm64 (10.2.0-1) ... 121s Setting up python3-numpy (1:1.24.2-2) ... 123s Setting up python3-cairo (1.25.1-2) ... 123s Setting up python3-rlpycairo (0.3.0-3) ... 123s Setting up python3-reportlab (4.1.0-1) ... 124s Processing triggers for libc-bin (2.39-0ubuntu2) ... 124s Processing triggers for systemd (255.2-3ubuntu2) ... 124s Processing triggers for man-db (2.12.0-3) ... 125s Processing triggers for sgml-base (1.31) ... 125s Setting up w3c-sgml-lib (1.3-3) ... 149s Setting up python3-biopython (1.81+dfsg-3) ... 150s Setting up kaptive (2.0.8-1) ... 150s Setting up autopkgtest-satdep (0) ... 155s (Reading database ... 78987 files and directories currently installed.) 155s Removing autopkgtest-satdep (0) ... 156s autopkgtest [02:05:23]: test run-unit-test: [----------------------- 223s exact_match: KL27 224s autopkgtest [02:06:31]: test run-unit-test: -----------------------] 224s run-unit-test PASS 224s autopkgtest [02:06:31]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 225s autopkgtest [02:06:32]: @@@@@@@@@@@@@@@@@@@@ summary 225s run-unit-test PASS 236s Creating nova instance adt-noble-arm64-kaptive-20240318-020247-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240318.img (UUID 6b9ea2ac-1792-4f95-a56d-e128e96ab6e9)...