0s autopkgtest [14:06:23]: starting date: 2024-03-09 0s autopkgtest [14:06:23]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [14:06:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7v5lnoji/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:cdebconf,src:at-spi2-core,src:glib2.0,src:gtk+2.0,src:readline --apt-upgrade jalview --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cdebconf/0.271ubuntu2 at-spi2-core/2.51.90-2 glib2.0/2.79.3-3ubuntu3 gtk+2.0/2.24.33-3.1ubuntu1 readline/8.2-3.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-13.secgroup --name adt-noble-arm64-jalview-20240309-140623-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 72s autopkgtest [14:07:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 76s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2642 kB] 76s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [3976 B] 76s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [429 kB] 76s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [37.3 kB] 76s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [572 kB] 76s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 76s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 76s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 76s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [2841 kB] 76s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 76s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [39.2 kB] 76s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 78s Fetched 6714 kB in 4s (1621 kB/s) 79s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s Calculating upgrade... 93s The following package was automatically installed and is no longer required: 93s ubuntu-advantage-tools 93s Use 'sudo apt autoremove' to remove it. 93s The following packages will be REMOVED: 93s libglib2.0-0 93s The following NEW packages will be installed: 93s libglib2.0-0t64 libnuma1 libsensors-config libsensors5 numactl sysstat 93s xdg-user-dirs 93s The following packages will be upgraded: 93s efibootmgr gir1.2-glib-2.0 libdebconfclient0 libglib2.0-data readline-common 93s ubuntu-minimal ubuntu-standard 93s 7 upgraded, 7 newly installed, 1 to remove and 0 not upgraded. 93s Need to get 2470 kB of archives. 93s After this operation, 2353 kB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu3 [182 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu3 [1527 kB] 94s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdebconfclient0 arm64 0.271ubuntu2 [11.2 kB] 94s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu3 [46.6 kB] 94s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 94s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.535 [10.5 kB] 94s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 94s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma1 arm64 2.0.18-1 [23.5 kB] 94s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.535 [10.5 kB] 94s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 efibootmgr arm64 18-1build1 [31.5 kB] 94s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libsensors-config all 1:3.6.0-9 [5458 B] 94s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libsensors5 arm64 1:3.6.0-9 [26.9 kB] 94s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 numactl arm64 2.0.18-1 [39.5 kB] 94s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 sysstat arm64 12.6.1-1ubuntu1 [480 kB] 94s Preconfiguring packages ... 95s Fetched 2470 kB in 1s (3140 kB/s) 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74662 files and directories currently installed.) 95s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu3_arm64.deb ... 95s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu3) over (2.79.2-1~ubuntu1) ... 95s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 95s udisks2 depends on libglib2.0-0 (>= 2.77.0). 95s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 95s python3-gi depends on libglib2.0-0 (>= 2.77.0). 95s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 95s netplan.io depends on libglib2.0-0 (>= 2.70.0). 95s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 95s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 95s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 95s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 95s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 95s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 95s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 95s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 95s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 95s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 95s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 95s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 95s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 95s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 95s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 95s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 95s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 95s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 95s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 95s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 95s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 95s fwupd depends on libglib2.0-0 (>= 2.79.0). 95s bolt depends on libglib2.0-0 (>= 2.56.0). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74662 files and directories currently installed.) 95s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 95s Selecting previously unselected package libglib2.0-0t64:arm64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74637 files and directories currently installed.) 95s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu3_arm64.deb ... 95s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 95s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 95s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu3) ... 96s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_arm64.deb ... 96s Unpacking libdebconfclient0:arm64 (0.271ubuntu2) over (0.271ubuntu1) ... 96s Setting up libdebconfclient0:arm64 (0.271ubuntu2) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74662 files and directories currently installed.) 96s Preparing to unpack .../00-libglib2.0-data_2.79.3-3ubuntu3_all.deb ... 96s Unpacking libglib2.0-data (2.79.3-3ubuntu3) over (2.79.2-1~ubuntu1) ... 97s Preparing to unpack .../01-readline-common_8.2-3.1_all.deb ... 97s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 97s Preparing to unpack .../02-ubuntu-minimal_1.535_arm64.deb ... 97s Unpacking ubuntu-minimal (1.535) over (1.534) ... 97s Selecting previously unselected package xdg-user-dirs. 97s Preparing to unpack .../03-xdg-user-dirs_0.18-1_arm64.deb ... 97s Unpacking xdg-user-dirs (0.18-1) ... 97s Selecting previously unselected package libnuma1:arm64. 97s Preparing to unpack .../04-libnuma1_2.0.18-1_arm64.deb ... 97s Unpacking libnuma1:arm64 (2.0.18-1) ... 97s Preparing to unpack .../05-ubuntu-standard_1.535_arm64.deb ... 97s Unpacking ubuntu-standard (1.535) over (1.534) ... 97s Preparing to unpack .../06-efibootmgr_18-1build1_arm64.deb ... 97s Unpacking efibootmgr (18-1build1) over (18-1) ... 97s Selecting previously unselected package libsensors-config. 97s Preparing to unpack .../07-libsensors-config_1%3a3.6.0-9_all.deb ... 97s Unpacking libsensors-config (1:3.6.0-9) ... 98s Selecting previously unselected package libsensors5:arm64. 98s Preparing to unpack .../08-libsensors5_1%3a3.6.0-9_arm64.deb ... 98s Unpacking libsensors5:arm64 (1:3.6.0-9) ... 98s Selecting previously unselected package numactl. 98s Preparing to unpack .../09-numactl_2.0.18-1_arm64.deb ... 98s Unpacking numactl (2.0.18-1) ... 98s Selecting previously unselected package sysstat. 98s Preparing to unpack .../10-sysstat_12.6.1-1ubuntu1_arm64.deb ... 98s Unpacking sysstat (12.6.1-1ubuntu1) ... 98s Setting up efibootmgr (18-1build1) ... 98s Setting up ubuntu-minimal (1.535) ... 98s Setting up xdg-user-dirs (0.18-1) ... 98s Setting up libsensors-config (1:3.6.0-9) ... 98s Setting up ubuntu-standard (1.535) ... 98s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu3) ... 98s No schema files found: doing nothing. 98s Setting up libglib2.0-data (2.79.3-3ubuntu3) ... 98s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu3) ... 98s Setting up libsensors5:arm64 (1:3.6.0-9) ... 98s Setting up libnuma1:arm64 (2.0.18-1) ... 98s Setting up readline-common (8.2-3.1) ... 98s Setting up sysstat (12.6.1-1ubuntu1) ... 99s 99s Creating config file /etc/default/sysstat with new version 99s update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode 99s Created symlink /etc/systemd/system/sysstat.service.wants/sysstat-collect.timer → /usr/lib/systemd/system/sysstat-collect.timer. 99s Created symlink /etc/systemd/system/sysstat.service.wants/sysstat-summary.timer → /usr/lib/systemd/system/sysstat-summary.timer. 100s Created symlink /etc/systemd/system/multi-user.target.wants/sysstat.service → /usr/lib/systemd/system/sysstat.service. 101s Setting up numactl (2.0.18-1) ... 101s Processing triggers for man-db (2.12.0-3) ... 102s Processing triggers for install-info (7.1-3) ... 102s Processing triggers for libc-bin (2.39-0ubuntu2) ... 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s The following packages will be REMOVED: 104s ubuntu-advantage-tools* 105s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 105s After this operation, 71.7 kB disk space will be freed. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 105s Removing ubuntu-advantage-tools (31.1) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74763 files and directories currently installed.) 105s Purging configuration files for ubuntu-advantage-tools (31.1) ... 107s sh: Attempting to set up Debian/Ubuntu apt sources automatically 107s sh: Distribution appears to be Ubuntu 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s eatmydata is already the newest version (131-1). 109s dbus is already the newest version (1.14.10-4ubuntu1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s rng-tools-debian is already the newest version (2.4). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s haveged is already the newest version (1.9.14-1ubuntu1). 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s The following packages will be REMOVED: 112s cloud-init* python3-configobj* python3-debconf* 113s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 113s After this operation, 3248 kB disk space will be freed. 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74762 files and directories currently installed.) 113s Removing cloud-init (24.1-0ubuntu1) ... 113s Removing python3-configobj (5.0.8-3) ... 113s Removing python3-debconf (1.5.86) ... 114s Processing triggers for man-db (2.12.0-3) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74373 files and directories currently installed.) 114s Purging configuration files for cloud-init (24.1-0ubuntu1) ... 115s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 115s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s linux-generic is already the newest version (6.8.0-11.11+1). 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 117s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 117s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 117s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 120s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s Calculating upgrade... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [14:08:25]: rebooting testbed after setup commands that affected boot 160s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 168s autopkgtest [14:09:11]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 169s autopkgtest [14:09:12]: testbed dpkg architecture: arm64 171s autopkgtest [14:09:14]: @@@@@@@@@@@@@@@@@@@@ apt-source jalview 174s Get:1 http://ftpmaster.internal/ubuntu noble/universe jalview 2.11.3.1+dfsg-1 (dsc) [2677 B] 174s Get:2 http://ftpmaster.internal/ubuntu noble/universe jalview 2.11.3.1+dfsg-1 (tar) [28.8 MB] 174s Get:3 http://ftpmaster.internal/ubuntu noble/universe jalview 2.11.3.1+dfsg-1 (diff) [60.3 kB] 175s gpgv: Signature made Thu Nov 30 16:38:01 2023 UTC 175s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 175s gpgv: Can't check signature: No public key 175s dpkg-source: warning: cannot verify inline signature for ./jalview_2.11.3.1+dfsg-1.dsc: no acceptable signature found 177s autopkgtest [14:09:20]: testing package jalview version 2.11.3.1+dfsg-1 177s autopkgtest [14:09:20]: build not needed 182s autopkgtest [14:09:25]: test someCommandLineInvocations: preparing testbed 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 185s Starting 2 pkgProblemResolver with broken count: 0 185s Done 186s Done 186s Starting pkgProblemResolver with broken count: 0 186s Starting 2 pkgProblemResolver with broken count: 0 186s Done 187s The following additional packages will be installed: 187s adwaita-icon-theme ant ant-optional antlr at-spi2-common 187s ca-certificates-java default-jre default-jre-headless fontconfig 187s fontconfig-config fonts-dejavu-core fonts-dejavu-mono groovy 187s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ivy jalview 187s java-common javahelp2 junit4 libactivation-java libandroid-json-org-java 187s libantlr-java libantlr4-runtime-java libaopalliance-java 187s libapache-mime4j-java libapache-pom-java libapfloat-java libargs4j-java 187s libasm-java libasound2 libasound2-data libatinject-jsr330-api-java 187s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 187s libaxis-java libbiojava6-java libbsf-java libcairo2 libcastor-core-java 187s libcastor-xml-java libcdi-api-java libciftools-java libcodemodel-java 187s libcommons-cli-java libcommons-codec-java libcommons-compress-java 187s libcommons-discovery-java libcommons-exec-java libcommons-httpclient-java 187s libcommons-io-java libcommons-jexl2-java libcommons-lang-java 187s libcommons-lang3-java libcommons-logging-java libcommons-math-java 187s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 187s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 187s libdtd-parser-java libel-api-java liberror-prone-java 187s libexec-maven-plugin-java libfastinfoset-java libfastutil-java 187s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 187s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 187s libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 187s libgmbal-commons-java libgmbal-java libgmbal-pfl-java libgoogle-gson-java 187s libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java 187s libhamcrest-java libharfbuzz0b libhawtjni-runtime-java libhtsjdk-java 187s libhttpclient-java libhttpcore-java libhttpmime-java libinchi1 187s libintervalstorej-java libisorelax-java libistack-commons-java 187s libitext5-java libjaba-client-java libjackson2-annotations-java 187s libjackson2-core-java libjackson2-databind-java libjansi-java 187s libjansi-native-java libjansi1-java libjaxb-api-java libjaxb-java 187s libjaxen-java libjaxrs-api-java libjaxws-api-java libjaxws-java libjbig0 187s libjersey1-client-java libjersey1-core-java libjetty9-java libjfreesvg-java 187s libjgrapht-java libjgraphx-java libjheaps-java libjline2-java libjmol-java 187s libjni-inchi-java libjni-inchi-jni libjpeg-turbo8 libjpeg8 187s libjson-simple-java libjsoup-java libjsp-api-java libjsr305-java 187s libjsr311-api-java libjswingreader-java libjws-api-java 187s libknopflerfish-osgi-framework-java liblcms2-2 liblerc4 liblightcouch-java 187s libllvm17 liblog4j1.2-java liblog4j2-java libmail-java 187s libmaven-archiver-java libmaven-compiler-plugin-java 187s libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java 187s libmaven-resolver-java libmaven-shared-incremental-java 187s libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java 187s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmetro-policy-java 187s libmiglayout-java libmimepull-java libmjson-java libmmtf-java 187s libmongodb-java libmsgpack-java libmsv-java libnaga-java libncbi-ngs3 187s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 187s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 libplexus-archiver-java 187s libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java 187s libplexus-component-annotations-java libplexus-container-default-java 187s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 187s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox-java 187s libqdox2-java librelaxng-datatype-java librhino-java librngom-java 187s libsaaj-java libsaaj-ri-java libservlet-api-java libsharpyuv0 187s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 187s libsnappy-jni libsnappy1v5 libstax-ex-java libstax2-api-java 187s libstreambuffer-java libthai-data libthai0 libtiff6 libtxw2-java 187s libvamsas-client-java libvecmath-java libvulkan1 libwagon-http-java 187s libwagon-provider-api-java libwebp7 libwebsocket-api-java libwoodstox-java 187s libwsdl4j-java libx11-xcb1 libxbean-reflect-java libxcb-dri2-0 libxcb-dri3-0 187s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 187s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 187s libxerces2-java libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 187s libxml-commons-resolver1.1-java libxpp3-java libxrandr2 libxrender1 187s libxshmfence1 libxsom-java libxstream-java libxtst6 libxxf86vm1 libxz-java 187s ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless ubuntu-mono varna 187s x11-common 187s Suggested packages: 187s ant-doc default-jdk | java-compiler | java-sdk javacc junit jython 187s libbcel-java libcommons-net-java libjaxp1.3-java libjdepend-java 187s libjsch-java liboro-java libregexp-java libxalan2-java groovy-doc ivy-doc 187s libbcpg-java libbcprov-java libjsch-agent-proxy-java clustalw kalign 187s t-coffee javahelp2-doc libandroid-json-org-java-doc libasound2-plugins 187s alsa-utils libatinject-jsr330-api-java-doc libaxis-java-doc 187s libbiojava6-java-doc bsh rhino libcastor-java-doc 187s libcommons-httpclient-java-doc libcommons-io-java-doc 187s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 187s cups-common libxpp2-java libgoogle-gson-java-doc gvfs libcglib-java 187s picard-tools libbcpkix-java libxml-security-java 187s libjackson2-annotations-java-doc libjdom1-java libxom-java jetty9 187s libjfreesvg-java-doc libjmol-java-doc libjson-simple-doc libjsoup-java-doc 187s libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc libcommons-csv-java 187s libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java 187s libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjctools-java 187s libjeromq-java libmail-java-doc libmaven-file-management-java-doc 187s libmaven-shared-incremental-java-doc libmaven-shared-utils-java-doc 187s liblogback-java libswt-gtk-4-java libmmtf-java-doc libngs-java-doc pcscd 187s libeclipse-jdt-core-java libplexus-utils2-java-doc libqdox-java-doc testng 187s libxerces2-java-doc libxml-commons-resolver1.1-java-doc libcglib-nodep-java 187s libjdom2-java libjettison-java libjoda-time-java libkxml2-java libnss-mdns 187s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 187s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 187s Recommended packages: 187s librsvg2-common libgpars-groovy-java libjcommander-java alsa-ucm-conf 187s alsa-topology-conf liboro-java libregexp-java libgdk-pixbuf2.0-bin 187s libgl1-amber-dri libgail-common libgtk2.0-bin libgtk2.0-0t64 187s mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 187s The following NEW packages will be installed: 187s adwaita-icon-theme ant ant-optional antlr at-spi2-common 187s ca-certificates-java default-jre default-jre-headless fontconfig 187s fontconfig-config fonts-dejavu-core fonts-dejavu-mono groovy 187s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ivy jalview 187s java-common javahelp2 junit4 libactivation-java libandroid-json-org-java 187s libantlr-java libantlr4-runtime-java libaopalliance-java 187s libapache-mime4j-java libapache-pom-java libapfloat-java libargs4j-java 187s libasm-java libasound2 libasound2-data libatinject-jsr330-api-java 187s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 187s libaxis-java libbiojava6-java libbsf-java libcairo2 libcastor-core-java 187s libcastor-xml-java libcdi-api-java libciftools-java libcodemodel-java 187s libcommons-cli-java libcommons-codec-java libcommons-compress-java 187s libcommons-discovery-java libcommons-exec-java libcommons-httpclient-java 187s libcommons-io-java libcommons-jexl2-java libcommons-lang-java 187s libcommons-lang3-java libcommons-logging-java libcommons-math-java 187s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 187s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 187s libdtd-parser-java libel-api-java liberror-prone-java 188s libexec-maven-plugin-java libfastinfoset-java libfastutil-java 188s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 188s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 188s libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 188s libgmbal-commons-java libgmbal-java libgmbal-pfl-java libgoogle-gson-java 188s libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java 188s libhamcrest-java libharfbuzz0b libhawtjni-runtime-java libhtsjdk-java 188s libhttpclient-java libhttpcore-java libhttpmime-java libinchi1 188s libintervalstorej-java libisorelax-java libistack-commons-java 188s libitext5-java libjaba-client-java libjackson2-annotations-java 188s libjackson2-core-java libjackson2-databind-java libjansi-java 188s libjansi-native-java libjansi1-java libjaxb-api-java libjaxb-java 188s libjaxen-java libjaxrs-api-java libjaxws-api-java libjaxws-java libjbig0 188s libjersey1-client-java libjersey1-core-java libjetty9-java libjfreesvg-java 188s libjgrapht-java libjgraphx-java libjheaps-java libjline2-java libjmol-java 188s libjni-inchi-java libjni-inchi-jni libjpeg-turbo8 libjpeg8 188s libjson-simple-java libjsoup-java libjsp-api-java libjsr305-java 188s libjsr311-api-java libjswingreader-java libjws-api-java 188s libknopflerfish-osgi-framework-java liblcms2-2 liblerc4 liblightcouch-java 188s libllvm17 liblog4j1.2-java liblog4j2-java libmail-java 188s libmaven-archiver-java libmaven-compiler-plugin-java 188s libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java 188s libmaven-resolver-java libmaven-shared-incremental-java 188s libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java 188s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmetro-policy-java 188s libmiglayout-java libmimepull-java libmjson-java libmmtf-java 188s libmongodb-java libmsgpack-java libmsv-java libnaga-java libncbi-ngs3 188s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 188s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 libplexus-archiver-java 188s libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java 188s libplexus-component-annotations-java libplexus-container-default-java 188s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 188s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox-java 188s libqdox2-java librelaxng-datatype-java librhino-java librngom-java 188s libsaaj-java libsaaj-ri-java libservlet-api-java libsharpyuv0 188s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 188s libsnappy-jni libsnappy1v5 libstax-ex-java libstax2-api-java 188s libstreambuffer-java libthai-data libthai0 libtiff6 libtxw2-java 188s libvamsas-client-java libvecmath-java libvulkan1 libwagon-http-java 188s libwagon-provider-api-java libwebp7 libwebsocket-api-java libwoodstox-java 188s libwsdl4j-java libx11-xcb1 libxbean-reflect-java libxcb-dri2-0 libxcb-dri3-0 188s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 188s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 188s libxerces2-java libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 188s libxml-commons-resolver1.1-java libxpp3-java libxrandr2 libxrender1 188s libxshmfence1 libxsom-java libxstream-java libxtst6 libxxf86vm1 libxz-java 188s ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless ubuntu-mono varna 188s x11-common 188s 0 upgraded, 257 newly installed, 0 to remove and 0 not upgraded. 188s 1 not fully installed or removed. 188s Need to get 211 MB of archives. 188s After this operation, 605 MB of additional disk space will be used. 188s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 188s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 188s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 188s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 188s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 188s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 188s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 188s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 188s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 188s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 188s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 189s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 189s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 189s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 189s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 189s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 189s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 189s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 189s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 190s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 190s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgtk2.0-common all 2.24.33-3.1ubuntu1 [126 kB] 190s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 at-spi2-common all 2.51.90-2 [8160 B] 190s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 190s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 190s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 190s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 190s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 190s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 190s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 190s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 190s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 190s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 190s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 190s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 190s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 190s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 190s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 190s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 190s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 190s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 190s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 190s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 190s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 190s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 190s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 190s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 190s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 190s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 190s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 190s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 190s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 190s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 190s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 190s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 190s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 190s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 190s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 190s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 190s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 190s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 190s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 190s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 190s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 190s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 190s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 190s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 190s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 190s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 190s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 190s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 190s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 190s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 190s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 191s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 191s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 191s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 191s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 191s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 191s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 191s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 191s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 191s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 191s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 191s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 191s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1 [68.1 kB] 191s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-discovery-java all 0.5-4 [70.8 kB] 191s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libasm-java all 9.6~us1-0ubuntu1 [386 kB] 191s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libactivation-java all 1.2.0-2 [84.7 kB] 191s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-api-java all 2.3.1-1 [119 kB] 191s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libstax-ex-java all 1.7.8-3 [40.9 kB] 191s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] 191s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.8 kB] 191s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libxsom-java all 2.3.0.1-10.1 [397 kB] 191s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastinfoset-java all 1.2.12-3 [343 kB] 191s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.2 kB] 191s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-commons-java all 3.2.1-b003-1.1 [46.6 kB] 191s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-pfl-java all 4.0.1-b003-2 [1029 kB] 191s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-java all 4.0.0-b002-1.1 [188 kB] 191s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 ant all 1.10.14-1 [2147 kB] 191s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 ant-optional all 1.10.14-1 [451 kB] 191s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libargs4j-java all 2.33-2 [137 kB] 192s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxen-java all 1.1.6-4 [214 kB] 192s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libdom4j-java all 2.1.4-1 [310 kB] 192s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 192s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-utils-java all 3.3.4-1 [137 kB] 192s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] 192s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-cli-java all 1.6.0-1 [59.9 kB] 192s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 192s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libaopalliance-java all 20070526-7 [8166 B] 192s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] 192s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] 192s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libguava-java all 32.0.1-1 [2692 kB] 193s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libguice-java all 4.2.3-2 [1434 kB] 193s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-parent-java all 35-1 [5810 B] 193s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-utils2-java all 3.4.2-1 [256 kB] 193s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-provider-api-java all 3.5.3-1 [47.9 kB] 193s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-resolver-java all 1.6.3-1 [544 kB] 193s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-cipher-java all 2.0-1 [14.7 kB] 193s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-classworlds-java all 2.7.0-1 [50.0 kB] 193s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-component-annotations-java all 2.1.1-1 [6550 B] 193s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-interpolation-java all 1.26-1 [76.8 kB] 193s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-sec-dispatcher-java all 2.0-3 [28.1 kB] 193s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4fakesync [8616 B] 193s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libcdi-api-java all 1.2-3 [54.3 kB] 193s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 193s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-inject-java all 0.3.4-2 [347 kB] 193s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-plexus-java all 0.3.4-3 [181 kB] 193s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven3-core-java all 3.8.7-2 [1565 kB] 193s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-io-java all 3.0.0-4 [32.6 kB] 193s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] 193s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 193s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-io-java all 3.3.1-2 [64.4 kB] 193s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 193s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 193s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 193s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libxz-java all 1.9-1 [140 kB] 193s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-archiver-java all 4.6.1-1 [185 kB] 193s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 193s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 193s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 194s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsoup-java all 1.15.3-1 [407 kB] 194s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-http-java all 3.5.3-1 [48.8 kB] 194s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 libistack-commons-java all 3.0.6-5 [145 kB] 194s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 libcodemodel-java all 2.6+jaxb2.3.0.1-10.1 [164 kB] 194s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 librngom-java all 2.3.0.1-10.1 [289 kB] 194s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 libtxw2-java all 2.3.0.1-10.1 [133 kB] 194s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 194s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 libdtd-parser-java all 1.2-1 [64.9 kB] 194s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-java all 2.3.0.1-10.1 [1967 kB] 194s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 libsaaj-java all 1.4.0-4 [38.2 kB] 194s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxws-api-java all 2.3.0-1.1 [49.9 kB] 194s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 libjws-api-java all 1.1-2 [21.2 kB] 194s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 libknopflerfish-osgi-framework-java all 6.1.1-3.1 [642 kB] 194s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libisorelax-java all 20041111-14 [63.4 kB] 194s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 194s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces2-java all 2.12.2-1 [1430 kB] 194s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 libmsv-java all 2009.1+dfsg1-6 [760 kB] 194s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 libstax2-api-java all 4.1-1 [152 kB] 194s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 libwoodstox-java all 1:6.2.1-1 [1122 kB] 194s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 libmetro-policy-java all 2.7.2-3ubuntu1 [171 kB] 194s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 libmimepull-java all 1.9.7-2 [66.9 kB] 194s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 libsaaj-ri-java all 1.4.1-1.1 [461 kB] 194s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxws-java all 2.3.0.2-2 [3046 kB] 194s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr-java all 2.7.7+dfsg-13 [452 kB] 194s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 antlr all 2.7.7+dfsg-13 [5154 B] 194s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 ivy all 2.5.2-1 [1286 kB] 194s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 libhamcrest-java all 2.2-2 [117 kB] 194s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 junit4 all 4.13.2-4 [347 kB] 194s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 libbsf-java all 1:2.4.0-8 [73.6 kB] 194s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi-java all 2.4.1-2 [83.0 kB] 194s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 libhawtjni-runtime-java all 1.18-1 [28.9 kB] 194s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi-native-java all 1.8-2 [24.1 kB] 194s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi1-java all 1.18-3ubuntu1 [56.0 kB] 194s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 libjline2-java all 2.14.6-5 [150 kB] 194s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsp-api-java all 2.3.4-3 [53.7 kB] 194s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 libqdox-java all 1.12.1-3 [172 kB] 194s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libservlet-api-java all 4.0.1-2 [81.0 kB] 194s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libxpp3-java all 1.1.4c-3 [292 kB] 194s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 libxstream-java all 1.4.20-1 [561 kB] 194s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 groovy all 2.4.21-10 [10.8 MB] 195s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 javahelp2 all 2.0.05.ds1-10 [942 kB] 195s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 libandroid-json-org-java all 20121204-20090211-5 [35.9 kB] 195s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-mime4j-java all 0.8.10-1 [442 kB] 195s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-httpclient-java all 3.1-16 [289 kB] 195s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 libmail-java all 1.6.5-2 [681 kB] 195s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libwsdl4j-java all 1.6.3-4.1 [184 kB] 195s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libaxis-java all 1.4-29 [1499 kB] 195s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 195s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 libciftools-java all 5.0.2-1 [2191 kB] 195s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math-java all 2.2-8 [921 kB] 195s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libitext5-java all 5.5.13.3-4 [2691 kB] 195s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-annotations-java all 2.14.0-1 [64.7 kB] 195s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-core-java all 2.14.1-1 [432 kB] 195s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-databind-java all 2.14.0-1 [1531 kB] 195s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr4-runtime-java all 4.9.2-2 [308 kB] 195s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 libapfloat-java all 1.13.0-1 [698 kB] 195s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-archiver-java all 3.6.0-1 [25.3 kB] 195s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-jar-plugin-java all 3.3.0-2 [23.9 kB] 195s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-text-java all 1.11.0-1 [215 kB] 195s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] 196s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 libjheaps-java all 0.14-2 [143 kB] 196s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgraphx-java all 2.1.0.7-3 [801 kB] 196s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgrapht-java all 1.5.2-1 [1584 kB] 197s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 libinchi1 arm64 1.03+dfsg-4 [448 kB] 197s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-jni arm64 0.8+dfsg-7 [10.0 kB] 197s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-exec-java all 1.3-2 [48.1 kB] 197s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 libexec-maven-plugin-java all 3.1.0-2 [66.1 kB] 197s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-incremental-java all 1.1-4 [9904 B] 197s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 197s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libxbean-reflect-java all 4.5-8 [132 kB] 197s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-container-default-java all 2.1.1-1 [191 kB] 197s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-compiler-java all 2.12.1-2 [98.4 kB] 197s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 libqdox2-java all 2.0.3-1 [296 kB] 197s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-languages-java all 1.1.1-2 [46.8 kB] 197s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-compiler-plugin-java all 3.10.1-2 [58.5 kB] 197s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 197s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-java all 0.8+dfsg-7 [32.3 kB] 197s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 libnaga-java all 3.0+svn80-5 [43.5 kB] 197s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 libjmol-java all 14.32.83+dfsg-3 [8469 kB] 197s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 libjson-simple-java all 2.3.0-1 [61.0 kB] 197s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 libmsgpack-java all 0.9.6-1 [159 kB] 197s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 libmmtf-java all 1.0.11-1 [184 kB] 197s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 libvecmath-java all 1.5.2-7 [96.9 kB] 197s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 libbiojava6-java all 6.1.0+dfsg-4 [5330 kB] 198s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 198s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 198s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 198s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 198s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 198s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 198s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 198s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 198s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 198s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 200s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 200s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 200s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpmime-java all 4.5.14-1 [39.6 kB] 200s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libintervalstorej-java all 1.2+dfsg-5 [25.8 kB] 200s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaba-client-java all 2.2.0-2 [400 kB] 200s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxrs-api-java all 2.1.2-2 [115 kB] 200s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr311-api-java all 1.1.1-1.1 [46.4 kB] 200s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 libjersey1-core-java all 1.19.3-8 [390 kB] 200s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 libjersey1-client-java all 1.19.3-8 [127 kB] 200s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 libel-api-java all 3.0.0-3 [64.9 kB] 200s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 libwebsocket-api-java all 1.1-2 [40.1 kB] 200s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libjetty9-java all 9.4.53-1 [2807 kB] 200s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 libjfreesvg-java all 4.1-2 [44.1 kB] 200s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 libjswingreader-java all 0.3-4 [81.5 kB] 200s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 200s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 200s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 200s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 libmiglayout-java all 11.1+ds-1 [177 kB] 200s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 libcastor-core-java all 1.3.2-7 [54.1 kB] 200s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 libcastor-xml-java all 1.3.2-7 [735 kB] 200s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 libvamsas-client-java all 0.2+dfsg-2 [583 kB] 200s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 varna all 3-93+ds-5 [796 kB] 200s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 jalview all 2.11.3.1+dfsg-1 [8735 kB] 201s Preconfiguring packages ... 201s Fetched 211 MB in 11s (18.9 MB/s) 201s Selecting previously unselected package ca-certificates-java. 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74318 files and directories currently installed.) 201s Preparing to unpack .../000-ca-certificates-java_20240118_all.deb ... 201s Unpacking ca-certificates-java (20240118) ... 201s Selecting previously unselected package java-common. 201s Preparing to unpack .../001-java-common_0.75+exp1_all.deb ... 201s Unpacking java-common (0.75+exp1) ... 201s Selecting previously unselected package libavahi-common-data:arm64. 201s Preparing to unpack .../002-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 201s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 202s Selecting previously unselected package libavahi-common3:arm64. 202s Preparing to unpack .../003-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 202s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 202s Selecting previously unselected package libavahi-client3:arm64. 202s Preparing to unpack .../004-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 202s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 202s Selecting previously unselected package libcups2:arm64. 203s Preparing to unpack .../005-libcups2_2.4.6-0ubuntu3_arm64.deb ... 203s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 203s Selecting previously unselected package liblcms2-2:arm64. 203s Preparing to unpack .../006-liblcms2-2_2.14-2_arm64.deb ... 203s Unpacking liblcms2-2:arm64 (2.14-2) ... 203s Selecting previously unselected package libjpeg-turbo8:arm64. 203s Preparing to unpack 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Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 203s Selecting previously unselected package libasound2-data. 203s Preparing to unpack .../013-libasound2-data_1.2.10-3build1_all.deb ... 203s Unpacking libasound2-data (1.2.10-3build1) ... 204s Selecting previously unselected package libasound2:arm64. 204s Preparing to unpack .../014-libasound2_1.2.10-3build1_arm64.deb ... 204s Unpacking libasound2:arm64 (1.2.10-3build1) ... 204s Selecting previously unselected package libgraphite2-3:arm64. 204s Preparing to unpack .../015-libgraphite2-3_1.3.14-2_arm64.deb ... 204s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 204s Selecting previously unselected package libharfbuzz0b:arm64. 204s Preparing to unpack .../016-libharfbuzz0b_8.3.0-2_arm64.deb ... 204s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 204s Selecting previously unselected package libpcsclite1:arm64. 204s Preparing to unpack .../017-libpcsclite1_2.0.0-1_arm64.deb ... 204s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 204s Selecting previously unselected package openjdk-21-jre-headless:arm64. 204s Preparing to unpack .../018-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 204s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 205s Selecting previously unselected package default-jre-headless. 205s Preparing to unpack .../019-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 205s Unpacking default-jre-headless (2:1.21-75+exp1) ... 205s Selecting previously unselected package libgtk2.0-common. 206s Preparing to unpack .../020-libgtk2.0-common_2.24.33-3.1ubuntu1_all.deb ... 206s Unpacking libgtk2.0-common (2.24.33-3.1ubuntu1) ... 206s Selecting previously unselected package at-spi2-common. 206s Preparing to unpack .../021-at-spi2-common_2.51.90-2_all.deb ... 206s Unpacking at-spi2-common (2.51.90-2) ... 206s Selecting previously unselected package libatk1.0-0:arm64. 206s Preparing to unpack .../022-libatk1.0-0_2.50.0-1_arm64.deb ... 206s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 206s Selecting previously unselected package libpixman-1-0:arm64. 206s Preparing to unpack .../023-libpixman-1-0_0.42.2-1_arm64.deb ... 206s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 206s Selecting previously unselected package libxcb-render0:arm64. 206s Preparing to unpack .../024-libxcb-render0_1.15-1_arm64.deb ... 206s Unpacking libxcb-render0:arm64 (1.15-1) ... 206s Selecting previously unselected package libxcb-shm0:arm64. 206s Preparing to unpack .../025-libxcb-shm0_1.15-1_arm64.deb ... 206s Unpacking libxcb-shm0:arm64 (1.15-1) ... 206s Selecting previously unselected package libxrender1:arm64. 206s Preparing to unpack .../026-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 206s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 206s Selecting previously unselected package libcairo2:arm64. 206s Preparing to unpack .../027-libcairo2_1.18.0-1_arm64.deb ... 206s Unpacking libcairo2:arm64 (1.18.0-1) ... 206s Selecting previously unselected package libgdk-pixbuf2.0-common. 206s Preparing to unpack .../028-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 206s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 206s Selecting previously unselected package libdeflate0:arm64. 206s Preparing to unpack .../029-libdeflate0_1.19-1_arm64.deb ... 206s Unpacking libdeflate0:arm64 (1.19-1) ... 206s Selecting previously unselected package libjbig0:arm64. 206s Preparing to unpack .../030-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 206s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 206s Selecting previously unselected package liblerc4:arm64. 206s Preparing to unpack .../031-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 206s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 206s Selecting previously unselected package libsharpyuv0:arm64. 206s Preparing to unpack .../032-libsharpyuv0_1.3.2-0.4_arm64.deb ... 206s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 206s Selecting previously unselected package libwebp7:arm64. 207s Preparing to unpack .../033-libwebp7_1.3.2-0.4_arm64.deb ... 207s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 207s Selecting previously unselected package libtiff6:arm64. 207s Preparing to unpack .../034-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 207s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 207s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 207s Preparing to unpack .../035-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 207s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 207s Selecting previously unselected package fontconfig. 207s Preparing to unpack .../036-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 207s Unpacking fontconfig (2.15.0-1ubuntu1) ... 207s Selecting previously unselected package libthai-data. 207s Preparing to unpack .../037-libthai-data_0.1.29-2_all.deb ... 207s Unpacking libthai-data (0.1.29-2) ... 207s Selecting previously unselected package libdatrie1:arm64. 207s Preparing to unpack .../038-libdatrie1_0.2.13-3_arm64.deb ... 207s Unpacking libdatrie1:arm64 (0.2.13-3) ... 207s Selecting previously unselected package libthai0:arm64. 207s Preparing to unpack .../039-libthai0_0.1.29-2_arm64.deb ... 207s Unpacking libthai0:arm64 (0.1.29-2) ... 207s Selecting previously unselected package libpango-1.0-0:arm64. 207s Preparing to unpack .../040-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 207s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 207s Selecting previously unselected package libpangoft2-1.0-0:arm64. 207s Preparing to unpack .../041-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 207s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 207s Selecting previously unselected package libpangocairo-1.0-0:arm64. 207s Preparing to unpack .../042-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 207s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 207s Selecting previously unselected package libxcomposite1:arm64. 207s Preparing to unpack .../043-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 207s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 207s Selecting previously unselected package libxfixes3:arm64. 207s Preparing to unpack .../044-libxfixes3_1%3a6.0.0-2_arm64.deb ... 207s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 207s Selecting previously unselected package libxcursor1:arm64. 207s Preparing to unpack .../045-libxcursor1_1%3a1.2.1-1_arm64.deb ... 207s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 207s Selecting previously unselected package libxdamage1:arm64. 207s Preparing to unpack .../046-libxdamage1_1%3a1.1.6-1_arm64.deb ... 207s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 207s Selecting previously unselected package libxi6:arm64. 207s Preparing to unpack .../047-libxi6_2%3a1.8.1-1_arm64.deb ... 207s Unpacking libxi6:arm64 (2:1.8.1-1) ... 207s Selecting previously unselected package libxinerama1:arm64. 207s Preparing to unpack .../048-libxinerama1_2%3a1.1.4-3_arm64.deb ... 207s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 207s Selecting previously unselected package libxrandr2:arm64. 207s Preparing to unpack .../049-libxrandr2_2%3a1.5.2-2_arm64.deb ... 207s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 207s Selecting previously unselected package gtk-update-icon-cache. 207s Preparing to unpack .../050-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 207s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 207s Selecting previously unselected package hicolor-icon-theme. 207s Preparing to unpack .../051-hicolor-icon-theme_0.17-2_all.deb ... 207s Unpacking hicolor-icon-theme (0.17-2) ... 207s Selecting previously unselected package humanity-icon-theme. 207s Preparing to unpack .../052-humanity-icon-theme_0.6.16_all.deb ... 207s Unpacking humanity-icon-theme (0.6.16) ... 208s Selecting previously unselected package ubuntu-mono. 208s Preparing to unpack .../053-ubuntu-mono_24.04-0ubuntu1_all.deb ... 208s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 208s Selecting previously unselected package adwaita-icon-theme. 208s Preparing to unpack .../054-adwaita-icon-theme_46~rc-1_all.deb ... 208s Unpacking adwaita-icon-theme (46~rc-1) ... 208s Selecting previously unselected package libgtk2.0-0:arm64. 208s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 208s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 208s Selecting previously unselected package libglvnd0:arm64. 208s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 208s Unpacking libglvnd0:arm64 (1.7.0-1) ... 209s Selecting previously unselected package libglapi-mesa:arm64. 209s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 209s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 209s Selecting previously unselected package libx11-xcb1:arm64. 209s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 209s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 209s Selecting previously unselected package libxcb-dri2-0:arm64. 209s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 209s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 209s Selecting previously unselected package libxcb-dri3-0:arm64. 209s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 209s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 209s Selecting previously unselected package libxcb-glx0:arm64. 209s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 209s Unpacking libxcb-glx0:arm64 (1.15-1) ... 209s Selecting previously unselected package libxcb-present0:arm64. 209s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 209s Unpacking libxcb-present0:arm64 (1.15-1) ... 209s Selecting previously unselected package libxcb-randr0:arm64. 209s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 209s Unpacking libxcb-randr0:arm64 (1.15-1) ... 209s Selecting previously unselected package libxcb-sync1:arm64. 209s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 209s Unpacking libxcb-sync1:arm64 (1.15-1) ... 209s Selecting previously unselected package libxcb-xfixes0:arm64. 209s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 209s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 209s Selecting previously unselected package libxshmfence1:arm64. 209s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 209s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 209s Selecting previously unselected package libxxf86vm1:arm64. 209s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 209s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 209s Selecting previously unselected package libvulkan1:arm64. 209s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 209s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 209s Selecting previously unselected package libdrm-amdgpu1:arm64. 209s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 209s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 209s Selecting previously unselected package libdrm-nouveau2:arm64. 209s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 209s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 209s Selecting previously unselected package libdrm-radeon1:arm64. 209s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 209s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 209s Selecting previously unselected package libllvm17:arm64. 209s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 209s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 210s Selecting previously unselected package libgl1-mesa-dri:arm64. 210s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 210s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 210s Selecting previously unselected package libglx-mesa0:arm64. 210s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 210s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 210s Selecting previously unselected package libglx0:arm64. 210s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 210s Unpacking libglx0:arm64 (1.7.0-1) ... 211s Selecting previously unselected package libgl1:arm64. 211s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 211s Unpacking libgl1:arm64 (1.7.0-1) ... 211s Selecting previously unselected package libgif7:arm64. 211s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 211s Unpacking libgif7:arm64 (5.2.1-2.5) ... 211s Selecting previously unselected package x11-common. 211s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 211s Unpacking x11-common (1:7.7+23ubuntu2) ... 211s Selecting previously unselected package libxtst6:arm64. 211s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 211s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 211s Selecting previously unselected package openjdk-21-jre:arm64. 211s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 211s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 211s Selecting previously unselected package default-jre. 211s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 211s Unpacking default-jre (2:1.21-75+exp1) ... 211s Selecting previously unselected package libapache-pom-java. 211s Preparing to unpack .../082-libapache-pom-java_29-2_all.deb ... 211s Unpacking libapache-pom-java (29-2) ... 211s Selecting previously unselected package libcommons-parent-java. 211s Preparing to unpack .../083-libcommons-parent-java_56-1_all.deb ... 211s Unpacking libcommons-parent-java (56-1) ... 211s Selecting previously unselected package libcommons-logging-java. 211s Preparing to unpack .../084-libcommons-logging-java_1.3.0-1_all.deb ... 211s Unpacking libcommons-logging-java (1.3.0-1) ... 211s Selecting previously unselected package libcommons-discovery-java. 211s Preparing to unpack .../085-libcommons-discovery-java_0.5-4_all.deb ... 211s Unpacking libcommons-discovery-java (0.5-4) ... 211s Selecting previously unselected package libasm-java. 211s Preparing to unpack .../086-libasm-java_9.6~us1-0ubuntu1_all.deb ... 211s Unpacking libasm-java (9.6~us1-0ubuntu1) ... 211s Selecting previously unselected package libactivation-java. 211s Preparing to unpack .../087-libactivation-java_1.2.0-2_all.deb ... 211s Unpacking libactivation-java (1.2.0-2) ... 211s Selecting previously unselected package libjaxb-api-java. 211s Preparing to unpack .../088-libjaxb-api-java_2.3.1-1_all.deb ... 211s Unpacking libjaxb-api-java (2.3.1-1) ... 211s Selecting previously unselected package libstax-ex-java. 211s Preparing to unpack .../089-libstax-ex-java_1.7.8-3_all.deb ... 211s Unpacking libstax-ex-java (1.7.8-3) ... 211s Selecting previously unselected package libstreambuffer-java. 211s Preparing to unpack .../090-libstreambuffer-java_1.5.4-1.1_all.deb ... 211s Unpacking libstreambuffer-java (1.5.4-1.1) ... 211s Selecting previously unselected package librelaxng-datatype-java. 211s Preparing to unpack .../091-librelaxng-datatype-java_1.0+ds1-3.1_all.deb ... 211s Unpacking librelaxng-datatype-java (1.0+ds1-3.1) ... 211s Selecting previously unselected package libxsom-java. 211s Preparing to unpack .../092-libxsom-java_2.3.0.1-10.1_all.deb ... 211s Unpacking libxsom-java (2.3.0.1-10.1) ... 211s Selecting previously unselected package libfastinfoset-java. 211s Preparing to unpack .../093-libfastinfoset-java_1.2.12-3_all.deb ... 211s Unpacking libfastinfoset-java (1.2.12-3) ... 211s Selecting previously unselected package libgeronimo-annotation-1.3-spec-java. 211s Preparing to unpack .../094-libgeronimo-annotation-1.3-spec-java_1.3-1_all.deb ... 211s Unpacking libgeronimo-annotation-1.3-spec-java (1.3-1) ... 211s Selecting previously unselected package libgmbal-commons-java. 211s Preparing to unpack .../095-libgmbal-commons-java_3.2.1-b003-1.1_all.deb ... 211s Unpacking libgmbal-commons-java (3.2.1-b003-1.1) ... 212s Selecting previously unselected package libgmbal-pfl-java. 212s Preparing to unpack .../096-libgmbal-pfl-java_4.0.1-b003-2_all.deb ... 212s Unpacking libgmbal-pfl-java (4.0.1-b003-2) ... 212s Selecting previously unselected package libgmbal-java. 212s Preparing to unpack .../097-libgmbal-java_4.0.0-b002-1.1_all.deb ... 212s Unpacking libgmbal-java (4.0.0-b002-1.1) ... 212s Selecting previously unselected package ant. 212s Preparing to unpack .../098-ant_1.10.14-1_all.deb ... 212s Unpacking ant (1.10.14-1) ... 212s Selecting previously unselected package ant-optional. 212s Preparing to unpack .../099-ant-optional_1.10.14-1_all.deb ... 212s Unpacking ant-optional (1.10.14-1) ... 212s Selecting previously unselected package libargs4j-java. 212s Preparing to unpack .../100-libargs4j-java_2.33-2_all.deb ... 212s Unpacking libargs4j-java (2.33-2) ... 212s Selecting previously unselected package libjaxen-java. 212s Preparing to unpack .../101-libjaxen-java_1.1.6-4_all.deb ... 212s Unpacking libjaxen-java (1.1.6-4) ... 212s Selecting previously unselected package libdom4j-java. 212s Preparing to unpack .../102-libdom4j-java_2.1.4-1_all.deb ... 212s Unpacking libdom4j-java (2.1.4-1) ... 212s Selecting previously unselected package libcommons-io-java. 212s Preparing to unpack .../103-libcommons-io-java_2.11.0-2_all.deb ... 212s Unpacking libcommons-io-java (2.11.0-2) ... 212s Selecting previously unselected package libmaven-shared-utils-java. 212s Preparing to unpack .../104-libmaven-shared-utils-java_3.3.4-1_all.deb ... 212s Unpacking libmaven-shared-utils-java (3.3.4-1) ... 212s Selecting previously unselected package libatinject-jsr330-api-java. 212s Preparing to unpack .../105-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... 212s Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... 212s Selecting previously unselected package libcommons-cli-java. 212s Preparing to unpack .../106-libcommons-cli-java_1.6.0-1_all.deb ... 212s Unpacking libcommons-cli-java (1.6.0-1) ... 212s Selecting previously unselected package libcommons-lang3-java. 212s Preparing to unpack .../107-libcommons-lang3-java_3.14.0-1_all.deb ... 212s Unpacking libcommons-lang3-java (3.14.0-1) ... 212s Selecting previously unselected package libaopalliance-java. 212s Preparing to unpack .../108-libaopalliance-java_20070526-7_all.deb ... 212s Unpacking libaopalliance-java (20070526-7) ... 212s Selecting previously unselected package liberror-prone-java. 212s Preparing to unpack .../109-liberror-prone-java_2.18.0-1_all.deb ... 212s Unpacking liberror-prone-java (2.18.0-1) ... 212s Selecting previously unselected package libjsr305-java. 212s Preparing to unpack .../110-libjsr305-java_0.1~+svn49-11_all.deb ... 212s Unpacking libjsr305-java (0.1~+svn49-11) ... 212s Selecting previously unselected package libguava-java. 212s Preparing to unpack .../111-libguava-java_32.0.1-1_all.deb ... 212s Unpacking libguava-java (32.0.1-1) ... 212s Selecting previously unselected package libguice-java. 212s Preparing to unpack .../112-libguice-java_4.2.3-2_all.deb ... 212s Unpacking libguice-java (4.2.3-2) ... 212s Selecting previously unselected package libmaven-parent-java. 212s Preparing to unpack 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libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 213s Selecting previously unselected package libcdi-api-java. 213s Preparing to unpack .../123-libcdi-api-java_1.2-3_all.deb ... 213s Unpacking libcdi-api-java (1.2-3) ... 213s Selecting previously unselected package libslf4j-java. 213s Preparing to unpack .../124-libslf4j-java_1.7.32-1_all.deb ... 213s Unpacking libslf4j-java (1.7.32-1) ... 213s Selecting previously unselected package libsisu-inject-java. 213s Preparing to unpack .../125-libsisu-inject-java_0.3.4-2_all.deb ... 213s Unpacking libsisu-inject-java (0.3.4-2) ... 213s Selecting previously unselected package libsisu-plexus-java. 213s Preparing to unpack .../126-libsisu-plexus-java_0.3.4-3_all.deb ... 213s Unpacking libsisu-plexus-java (0.3.4-3) ... 213s Selecting previously unselected package libmaven3-core-java. 213s Preparing to unpack .../127-libmaven3-core-java_3.8.7-2_all.deb ... 213s Unpacking libmaven3-core-java (3.8.7-2) ... 213s Selecting previously unselected package libmaven-shared-io-java. 213s Preparing to unpack .../128-libmaven-shared-io-java_3.0.0-4_all.deb ... 213s Unpacking libmaven-shared-io-java (3.0.0-4) ... 213s Selecting previously unselected package libmaven-file-management-java. 213s Preparing to unpack .../129-libmaven-file-management-java_3.0.0-1_all.deb ... 213s Unpacking libmaven-file-management-java (3.0.0-1) ... 213s Selecting previously unselected package libcommons-compress-java. 213s Preparing to unpack .../130-libcommons-compress-java_1.25.0-1_all.deb ... 213s Unpacking libcommons-compress-java (1.25.0-1) ... 213s Selecting previously unselected package libplexus-io-java. 213s Preparing to unpack .../131-libplexus-io-java_3.3.1-2_all.deb ... 213s Unpacking libplexus-io-java (3.3.1-2) ... 213s Selecting previously unselected package libsnappy1v5:arm64. 213s Preparing to unpack .../132-libsnappy1v5_1.1.10-1_arm64.deb ... 213s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 213s Selecting previously unselected package libsnappy-jni. 213s Preparing to unpack .../133-libsnappy-jni_1.1.10.5-1_arm64.deb ... 213s Unpacking libsnappy-jni (1.1.10.5-1) ... 213s Selecting previously unselected package libsnappy-java. 213s Preparing to unpack .../134-libsnappy-java_1.1.10.5-1_all.deb ... 213s Unpacking libsnappy-java (1.1.10.5-1) ... 213s Selecting previously unselected package libxz-java. 213s Preparing to unpack .../135-libxz-java_1.9-1_all.deb ... 213s Unpacking libxz-java (1.9-1) ... 213s Selecting previously unselected package libplexus-archiver-java. 213s Preparing to unpack .../136-libplexus-archiver-java_4.6.1-1_all.deb ... 213s Unpacking libplexus-archiver-java (4.6.1-1) ... 213s Selecting previously unselected package libhttpcore-java. 213s Preparing to unpack .../137-libhttpcore-java_4.4.16-1_all.deb ... 213s Unpacking libhttpcore-java (4.4.16-1) ... 213s Selecting previously unselected package libcommons-codec-java. 213s Preparing to unpack .../138-libcommons-codec-java_1.16.0-1_all.deb ... 213s Unpacking libcommons-codec-java (1.16.0-1) ... 213s Selecting previously unselected package libhttpclient-java. 213s Preparing to unpack .../139-libhttpclient-java_4.5.14-1_all.deb ... 213s Unpacking libhttpclient-java (4.5.14-1) ... 213s Selecting previously unselected package libjsoup-java. 213s Preparing to unpack .../140-libjsoup-java_1.15.3-1_all.deb ... 213s Unpacking libjsoup-java (1.15.3-1) ... 213s Selecting previously unselected package libwagon-http-java. 213s Preparing to unpack .../141-libwagon-http-java_3.5.3-1_all.deb ... 213s Unpacking libwagon-http-java (3.5.3-1) ... 213s Selecting previously unselected package libistack-commons-java. 213s Preparing to unpack .../142-libistack-commons-java_3.0.6-5_all.deb ... 213s Unpacking libistack-commons-java (3.0.6-5) ... 213s Selecting previously unselected package libcodemodel-java. 213s Preparing to unpack .../143-libcodemodel-java_2.6+jaxb2.3.0.1-10.1_all.deb ... 213s Unpacking libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 213s Selecting previously unselected package librngom-java. 213s Preparing to unpack .../144-librngom-java_2.3.0.1-10.1_all.deb ... 213s Unpacking librngom-java (2.3.0.1-10.1) ... 213s Selecting previously unselected package libtxw2-java. 214s Preparing to unpack .../145-libtxw2-java_2.3.0.1-10.1_all.deb ... 214s Unpacking libtxw2-java (2.3.0.1-10.1) ... 214s Selecting previously unselected package libxml-commons-resolver1.1-java. 214s Preparing to unpack .../146-libxml-commons-resolver1.1-java_1.2-11_all.deb ... 214s Unpacking libxml-commons-resolver1.1-java (1.2-11) ... 214s Selecting previously unselected package libdtd-parser-java. 214s Preparing to unpack .../147-libdtd-parser-java_1.2-1_all.deb ... 214s Unpacking libdtd-parser-java (1.2-1) ... 214s Selecting previously unselected package libjaxb-java. 214s Preparing to unpack .../148-libjaxb-java_2.3.0.1-10.1_all.deb ... 214s Unpacking libjaxb-java (2.3.0.1-10.1) ... 214s Selecting previously unselected package libsaaj-java. 214s Preparing to unpack .../149-libsaaj-java_1.4.0-4_all.deb ... 214s Unpacking libsaaj-java (1.4.0-4) ... 214s Selecting previously unselected package libjaxws-api-java. 214s Preparing to unpack .../150-libjaxws-api-java_2.3.0-1.1_all.deb ... 214s Unpacking libjaxws-api-java (2.3.0-1.1) ... 214s Selecting previously unselected package libjws-api-java. 214s Preparing to unpack .../151-libjws-api-java_1.1-2_all.deb ... 214s Unpacking libjws-api-java (1.1-2) ... 214s Selecting previously unselected package libknopflerfish-osgi-framework-java. 214s Preparing to unpack .../152-libknopflerfish-osgi-framework-java_6.1.1-3.1_all.deb ... 214s Unpacking libknopflerfish-osgi-framework-java (6.1.1-3.1) ... 214s Selecting previously unselected package libisorelax-java. 214s Preparing to unpack .../153-libisorelax-java_20041111-14_all.deb ... 214s Unpacking libisorelax-java (20041111-14) ... 214s Selecting previously unselected package libxml-commons-external-java. 214s Preparing to unpack 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libmetro-policy-java (2.7.2-3ubuntu1) ... 214s Selecting previously unselected package libmimepull-java. 214s Preparing to unpack .../160-libmimepull-java_1.9.7-2_all.deb ... 214s Unpacking libmimepull-java (1.9.7-2) ... 214s Selecting previously unselected package libsaaj-ri-java. 214s Preparing to unpack .../161-libsaaj-ri-java_1.4.1-1.1_all.deb ... 214s Unpacking libsaaj-ri-java (1.4.1-1.1) ... 214s Selecting previously unselected package libjaxws-java. 214s Preparing to unpack .../162-libjaxws-java_2.3.0.2-2_all.deb ... 214s Unpacking libjaxws-java (2.3.0.2-2) ... 214s Selecting previously unselected package libantlr-java. 214s Preparing to unpack .../163-libantlr-java_2.7.7+dfsg-13_all.deb ... 214s Unpacking libantlr-java (2.7.7+dfsg-13) ... 214s Selecting previously unselected package antlr. 214s Preparing to unpack .../164-antlr_2.7.7+dfsg-13_all.deb ... 214s Unpacking antlr (2.7.7+dfsg-13) ... 214s Selecting previously unselected package ivy. 214s Preparing to unpack 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Preparing to unpack .../171-libjansi-native-java_1.8-2_all.deb ... 215s Unpacking libjansi-native-java (1.8-2) ... 215s Selecting previously unselected package libjansi1-java. 215s Preparing to unpack .../172-libjansi1-java_1.18-3ubuntu1_all.deb ... 215s Unpacking libjansi1-java (1.18-3ubuntu1) ... 215s Selecting previously unselected package libjline2-java. 215s Preparing to unpack .../173-libjline2-java_2.14.6-5_all.deb ... 215s Unpacking libjline2-java (2.14.6-5) ... 215s Selecting previously unselected package libjsp-api-java. 215s Preparing to unpack .../174-libjsp-api-java_2.3.4-3_all.deb ... 215s Unpacking libjsp-api-java (2.3.4-3) ... 215s Selecting previously unselected package libqdox-java. 215s Preparing to unpack .../175-libqdox-java_1.12.1-3_all.deb ... 215s Unpacking libqdox-java (1.12.1-3) ... 215s Selecting previously unselected package libservlet-api-java. 215s Preparing to unpack .../176-libservlet-api-java_4.0.1-2_all.deb ... 215s Unpacking libservlet-api-java (4.0.1-2) ... 215s Selecting previously unselected package libxpp3-java. 215s Preparing to unpack .../177-libxpp3-java_1.1.4c-3_all.deb ... 215s Unpacking libxpp3-java (1.1.4c-3) ... 215s Selecting previously unselected package libxstream-java. 215s Preparing to unpack .../178-libxstream-java_1.4.20-1_all.deb ... 215s Unpacking libxstream-java (1.4.20-1) ... 215s Selecting previously unselected package groovy. 215s Preparing to unpack .../179-groovy_2.4.21-10_all.deb ... 215s Unpacking groovy (2.4.21-10) ... 215s Selecting previously unselected package javahelp2. 215s Preparing to unpack .../180-javahelp2_2.0.05.ds1-10_all.deb ... 215s Unpacking javahelp2 (2.0.05.ds1-10) ... 215s Selecting previously unselected package libandroid-json-org-java. 215s Preparing to unpack .../181-libandroid-json-org-java_20121204-20090211-5_all.deb ... 215s Unpacking libandroid-json-org-java (20121204-20090211-5) ... 215s Selecting previously unselected package libapache-mime4j-java. 215s Preparing to unpack .../182-libapache-mime4j-java_0.8.10-1_all.deb ... 215s Unpacking libapache-mime4j-java (0.8.10-1) ... 215s Selecting previously unselected package libcommons-httpclient-java. 215s Preparing to unpack .../183-libcommons-httpclient-java_3.1-16_all.deb ... 215s Unpacking libcommons-httpclient-java (3.1-16) ... 215s Selecting previously unselected package libmail-java. 215s Preparing to unpack .../184-libmail-java_1.6.5-2_all.deb ... 215s Unpacking libmail-java (1.6.5-2) ... 216s Selecting previously unselected package libwsdl4j-java. 216s Preparing to unpack .../185-libwsdl4j-java_1.6.3-4.1_all.deb ... 216s Unpacking libwsdl4j-java (1.6.3-4.1) ... 216s Selecting previously unselected package libaxis-java. 216s Preparing to unpack .../186-libaxis-java_1.4-29_all.deb ... 216s Unpacking libaxis-java (1.4-29) ... 216s Selecting previously unselected package libgoogle-gson-java. 216s Preparing to unpack .../187-libgoogle-gson-java_2.10.1-1_all.deb ... 216s Unpacking libgoogle-gson-java (2.10.1-1) ... 216s Selecting previously unselected package libciftools-java. 216s Preparing to unpack .../188-libciftools-java_5.0.2-1_all.deb ... 216s Unpacking libciftools-java (5.0.2-1) ... 216s Selecting previously unselected package libcommons-math-java. 216s Preparing to unpack .../189-libcommons-math-java_2.2-8_all.deb ... 216s Unpacking libcommons-math-java (2.2-8) ... 216s Selecting previously unselected package libitext5-java. 216s Preparing to unpack .../190-libitext5-java_5.5.13.3-4_all.deb ... 216s Unpacking libitext5-java (5.5.13.3-4) ... 216s Selecting previously unselected package libjackson2-annotations-java. 216s Preparing to unpack .../191-libjackson2-annotations-java_2.14.0-1_all.deb ... 216s Unpacking libjackson2-annotations-java (2.14.0-1) ... 216s Selecting previously unselected package libjackson2-core-java. 216s Preparing to unpack .../192-libjackson2-core-java_2.14.1-1_all.deb ... 216s Unpacking libjackson2-core-java (2.14.1-1) ... 216s Selecting previously unselected package libjackson2-databind-java. 216s Preparing to unpack .../193-libjackson2-databind-java_2.14.0-1_all.deb ... 216s Unpacking libjackson2-databind-java (2.14.0-1) ... 216s Selecting previously unselected package libantlr4-runtime-java. 216s Preparing to unpack .../194-libantlr4-runtime-java_4.9.2-2_all.deb ... 216s Unpacking libantlr4-runtime-java (4.9.2-2) ... 216s Selecting previously unselected package libapfloat-java. 216s Preparing to unpack .../195-libapfloat-java_1.13.0-1_all.deb ... 216s Unpacking libapfloat-java (1.13.0-1) ... 216s Selecting previously unselected package libmaven-archiver-java. 216s Preparing to unpack .../196-libmaven-archiver-java_3.6.0-1_all.deb ... 216s Unpacking libmaven-archiver-java (3.6.0-1) ... 216s Selecting previously unselected package libmaven-jar-plugin-java. 216s Preparing to unpack .../197-libmaven-jar-plugin-java_3.3.0-2_all.deb ... 216s Unpacking libmaven-jar-plugin-java (3.3.0-2) ... 216s Selecting previously unselected package libcommons-text-java. 216s Preparing to unpack .../198-libcommons-text-java_1.11.0-1_all.deb ... 216s Unpacking libcommons-text-java (1.11.0-1) ... 216s Selecting previously unselected package libfastutil-java. 216s Preparing to unpack .../199-libfastutil-java_8.5.12+dfsg-1_all.deb ... 216s Unpacking libfastutil-java (8.5.12+dfsg-1) ... 216s Selecting previously unselected package libjheaps-java. 216s Preparing to unpack .../200-libjheaps-java_0.14-2_all.deb ... 216s Unpacking libjheaps-java (0.14-2) ... 216s Selecting previously unselected package libjgraphx-java. 216s Preparing to unpack .../201-libjgraphx-java_2.1.0.7-3_all.deb ... 216s Unpacking libjgraphx-java (2.1.0.7-3) ... 216s Selecting previously unselected package libjgrapht-java. 216s Preparing to unpack .../202-libjgrapht-java_1.5.2-1_all.deb ... 216s Unpacking libjgrapht-java (1.5.2-1) ... 216s Selecting previously unselected package libinchi1. 216s Preparing to unpack .../203-libinchi1_1.03+dfsg-4_arm64.deb ... 216s Unpacking libinchi1 (1.03+dfsg-4) ... 216s Selecting previously unselected package libjni-inchi-jni. 216s Preparing to unpack .../204-libjni-inchi-jni_0.8+dfsg-7_arm64.deb ... 216s Unpacking libjni-inchi-jni (0.8+dfsg-7) ... 216s Selecting previously unselected package libcommons-exec-java. 216s Preparing to unpack .../205-libcommons-exec-java_1.3-2_all.deb ... 216s Unpacking libcommons-exec-java (1.3-2) ... 217s Selecting previously unselected package libexec-maven-plugin-java. 217s Preparing to unpack .../206-libexec-maven-plugin-java_3.1.0-2_all.deb ... 217s Unpacking libexec-maven-plugin-java (3.1.0-2) ... 217s Selecting previously unselected package libmaven-shared-incremental-java. 217s Preparing to unpack .../207-libmaven-shared-incremental-java_1.1-4_all.deb ... 217s Unpacking libmaven-shared-incremental-java (1.1-4) ... 217s Selecting previously unselected package libcommons-lang-java. 217s Preparing to unpack .../208-libcommons-lang-java_2.6-10_all.deb ... 217s Unpacking libcommons-lang-java (2.6-10) ... 217s Selecting previously unselected package libxbean-reflect-java. 217s Preparing to unpack .../209-libxbean-reflect-java_4.5-8_all.deb ... 217s Unpacking libxbean-reflect-java (4.5-8) ... 217s Selecting previously unselected package libplexus-container-default-java. 217s Preparing to unpack .../210-libplexus-container-default-java_2.1.1-1_all.deb ... 217s Unpacking libplexus-container-default-java (2.1.1-1) ... 217s Selecting previously unselected package libplexus-compiler-java. 217s Preparing to unpack .../211-libplexus-compiler-java_2.12.1-2_all.deb ... 217s Unpacking libplexus-compiler-java (2.12.1-2) ... 217s Selecting previously unselected package libqdox2-java. 217s Preparing to unpack .../212-libqdox2-java_2.0.3-1_all.deb ... 217s Unpacking libqdox2-java (2.0.3-1) ... 217s Selecting previously unselected package libplexus-languages-java. 217s Preparing to unpack .../213-libplexus-languages-java_1.1.1-2_all.deb ... 217s Unpacking libplexus-languages-java (1.1.1-2) ... 217s Selecting previously unselected package libmaven-compiler-plugin-java. 217s Preparing to unpack .../214-libmaven-compiler-plugin-java_3.10.1-2_all.deb ... 217s Unpacking libmaven-compiler-plugin-java (3.10.1-2) ... 217s Selecting previously unselected package liblog4j1.2-java. 217s Preparing to unpack .../215-liblog4j1.2-java_1.2.17-11_all.deb ... 217s Unpacking liblog4j1.2-java (1.2.17-11) ... 217s Selecting previously unselected package libjni-inchi-java. 217s Preparing to unpack .../216-libjni-inchi-java_0.8+dfsg-7_all.deb ... 217s Unpacking libjni-inchi-java (0.8+dfsg-7) ... 217s Selecting previously unselected package libnaga-java. 217s Preparing to unpack .../217-libnaga-java_3.0+svn80-5_all.deb ... 217s Unpacking libnaga-java (3.0+svn80-5) ... 217s Selecting previously unselected package libjmol-java. 217s Preparing to unpack .../218-libjmol-java_14.32.83+dfsg-3_all.deb ... 217s Unpacking libjmol-java (14.32.83+dfsg-3) ... 217s Selecting previously unselected package libjson-simple-java. 217s Preparing to unpack .../219-libjson-simple-java_2.3.0-1_all.deb ... 217s Unpacking libjson-simple-java (2.3.0-1) ... 217s Selecting previously unselected package libmsgpack-java. 217s Preparing to unpack .../220-libmsgpack-java_0.9.6-1_all.deb ... 217s Unpacking libmsgpack-java (0.9.6-1) ... 217s Selecting previously unselected package libmmtf-java. 217s Preparing to unpack .../221-libmmtf-java_1.0.11-1_all.deb ... 217s Unpacking libmmtf-java (1.0.11-1) ... 217s Selecting previously unselected package libvecmath-java. 217s Preparing to unpack .../222-libvecmath-java_1.5.2-7_all.deb ... 217s Unpacking libvecmath-java (1.5.2-7) ... 217s Selecting previously unselected package libbiojava6-java. 217s Preparing to unpack .../223-libbiojava6-java_6.1.0+dfsg-4_all.deb ... 217s Unpacking libbiojava6-java (6.1.0+dfsg-4) ... 217s Selecting previously unselected package libcommons-jexl2-java. 217s Preparing to unpack .../224-libcommons-jexl2-java_2.1.1-6_all.deb ... 217s Unpacking libcommons-jexl2-java (2.1.1-6) ... 217s Selecting previously unselected package libmjson-java. 217s Preparing to unpack .../225-libmjson-java_1.4.0-3_all.deb ... 217s Unpacking libmjson-java (1.4.0-3) ... 217s Selecting previously unselected package libmbedcrypto7:arm64. 217s Preparing to unpack .../226-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 217s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 217s Selecting previously unselected package libmbedx509-1:arm64. 217s Preparing to unpack .../227-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 217s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 217s Selecting previously unselected package libmbedtls14:arm64. 217s Preparing to unpack .../228-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 217s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 217s Selecting previously unselected package ncbi-vdb-data. 217s Preparing to unpack .../229-ncbi-vdb-data_3.0.2+dfsg-2_all.deb 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librhino-java (1.7.14-2.1) ... 218s Selecting previously unselected package libhtsjdk-java. 218s Preparing to unpack .../235-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 218s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 218s Selecting previously unselected package libhttpmime-java. 218s Preparing to unpack .../236-libhttpmime-java_4.5.14-1_all.deb ... 218s Unpacking libhttpmime-java (4.5.14-1) ... 218s Selecting previously unselected package libintervalstorej-java. 218s Preparing to unpack .../237-libintervalstorej-java_1.2+dfsg-5_all.deb ... 218s Unpacking libintervalstorej-java (1.2+dfsg-5) ... 218s Selecting previously unselected package libjaba-client-java. 218s Preparing to unpack .../238-libjaba-client-java_2.2.0-2_all.deb ... 218s Unpacking libjaba-client-java (2.2.0-2) ... 218s Selecting previously unselected package libjaxrs-api-java. 218s Preparing to unpack .../239-libjaxrs-api-java_2.1.2-2_all.deb ... 218s Unpacking libjaxrs-api-java (2.1.2-2) ... 218s Selecting previously unselected package libjsr311-api-java. 218s Preparing to unpack .../240-libjsr311-api-java_1.1.1-1.1_all.deb ... 218s Unpacking libjsr311-api-java (1.1.1-1.1) ... 218s Selecting previously unselected package libjersey1-core-java. 218s Preparing to unpack .../241-libjersey1-core-java_1.19.3-8_all.deb ... 218s Unpacking libjersey1-core-java (1.19.3-8) ... 218s Selecting previously unselected package libjersey1-client-java. 218s Preparing to unpack .../242-libjersey1-client-java_1.19.3-8_all.deb ... 218s Unpacking libjersey1-client-java (1.19.3-8) ... 218s Selecting previously unselected package libel-api-java. 218s Preparing to unpack .../243-libel-api-java_3.0.0-3_all.deb ... 218s Unpacking libel-api-java (3.0.0-3) ... 218s Selecting previously unselected package libwebsocket-api-java. 218s Preparing to unpack .../244-libwebsocket-api-java_1.1-2_all.deb ... 218s Unpacking libwebsocket-api-java (1.1-2) ... 218s Selecting previously unselected package libjetty9-java. 218s Preparing to unpack .../245-libjetty9-java_9.4.53-1_all.deb ... 218s Unpacking libjetty9-java (9.4.53-1) ... 218s Selecting previously unselected package libjfreesvg-java. 218s Preparing to unpack .../246-libjfreesvg-java_4.1-2_all.deb ... 218s Unpacking libjfreesvg-java (4.1-2) ... 218s Selecting previously unselected package libjswingreader-java. 218s Preparing to unpack .../247-libjswingreader-java_0.3-4_all.deb ... 218s Unpacking libjswingreader-java (0.3-4) ... 218s Selecting previously unselected package liblightcouch-java. 218s Preparing to unpack .../248-liblightcouch-java_0.2.0-1_all.deb ... 218s Unpacking liblightcouch-java (0.2.0-1) ... 218s Selecting previously unselected package libmongodb-java. 218s Preparing to unpack .../249-libmongodb-java_3.6.3-2_all.deb ... 218s Unpacking libmongodb-java (3.6.3-2) ... 219s Selecting previously unselected package liblog4j2-java. 219s Preparing to unpack .../250-liblog4j2-java_2.19.0-2_all.deb ... 219s Unpacking liblog4j2-java (2.19.0-2) ... 219s Selecting previously unselected package libmiglayout-java. 219s Preparing to unpack .../251-libmiglayout-java_11.1+ds-1_all.deb ... 219s Unpacking libmiglayout-java (11.1+ds-1) ... 219s Selecting previously unselected package libcastor-core-java. 219s Preparing to unpack .../252-libcastor-core-java_1.3.2-7_all.deb ... 219s Unpacking libcastor-core-java (1.3.2-7) ... 219s Selecting previously unselected package libcastor-xml-java. 219s Preparing to unpack .../253-libcastor-xml-java_1.3.2-7_all.deb ... 219s Unpacking libcastor-xml-java (1.3.2-7) ... 219s Selecting previously unselected package libvamsas-client-java. 219s Preparing to unpack .../254-libvamsas-client-java_0.2+dfsg-2_all.deb ... 219s Unpacking libvamsas-client-java (0.2+dfsg-2) ... 219s Selecting previously unselected package varna. 219s Preparing to unpack .../255-varna_3-93+ds-5_all.deb ... 219s Unpacking varna (3-93+ds-5) ... 219s Selecting previously unselected package jalview. 219s Preparing to unpack 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libqdox-java (1.12.1-3) ... 219s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 219s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 219s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 219s Setting up libjsr305-java (0.1~+svn49-11) ... 219s Setting up libjws-api-java (1.1-2) ... 219s Setting up hicolor-icon-theme (0.17-2) ... 219s Setting up libxi6:arm64 (2:1.8.1-1) ... 219s Setting up java-common (0.75+exp1) ... 219s Setting up libgmbal-pfl-java (4.0.1-b003-2) ... 219s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 219s Setting up libdatrie1:arm64 (0.2.13-3) ... 219s Setting up libqdox2-java (2.0.3-1) ... 219s Setting up libaopalliance-java (20070526-7) ... 219s Setting up libcommons-cli-java (1.6.0-1) ... 219s Setting up libjheaps-java (0.14-2) ... 219s Setting up libcommons-exec-java (1.3-2) ... 219s Setting up libvecmath-java (1.5.2-7) ... 219s Setting up libxcb-render0:arm64 (1.15-1) ... 219s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 219s Setting up libglvnd0:arm64 (1.7.0-1) ... 219s Setting up libgoogle-gson-java (2.10.1-1) ... 219s Setting up libjsr311-api-java (1.1.1-1.1) ... 219s Setting up libmjson-java (1.4.0-3) ... 219s Setting up libxcb-glx0:arm64 (1.15-1) ... 219s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 219s Setting up libasm-java (9.6~us1-0ubuntu1) ... 219s Setting up x11-common (1:7.7+23ubuntu2) ... 220s Setting up libdeflate0:arm64 (1.19-1) ... 220s Setting up liblog4j1.2-java (1.2.17-11) ... 220s Setting up libel-api-java (3.0.0-3) ... 220s Setting up libplexus-component-annotations-java (2.1.1-1) ... 220s Setting up libantlr4-runtime-java (4.9.2-2) ... 220s Setting up libxcb-shm0:arm64 (1.15-1) ... 220s Setting up libjson-simple-java (2.3.0-1) ... 220s Setting up libwsdl4j-java (1.6.3-4.1) ... 220s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 220s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 220s Setting up libstax2-api-java (4.1-1) ... 220s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 220s Setting up libexec-maven-plugin-java (3.1.0-2) ... 220s Setting up libxcb-present0:arm64 (1.15-1) ... 220s Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... 220s Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 220s Setting up libasound2-data (1.2.10-3build1) ... 220s Setting up libandroid-json-org-java (20121204-20090211-5) ... 220s Setting up librhino-java (1.7.14-2.1) ... 220s Setting up libbsf-java (1:2.4.0-8) ... 220s Setting up libjersey1-core-java (1.19.3-8) ... 220s Setting up libjaxen-java (1.1.6-4) ... 220s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 220s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 220s Setting up libxcb-sync1:arm64 (1.15-1) ... 220s Setting up libjansi-java (2.4.1-2) ... 220s Setting up libapache-pom-java (29-2) ... 220s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 220s Setting up libxpp3-java (1.1.4c-3) ... 220s Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... 220s Setting up libwebsocket-api-java (1.1-2) ... 220s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 220s Setting up libplexus-interpolation-java (1.26-1) ... 220s Setting up fonts-dejavu-mono (2.37-8) ... 220s Setting up libitext5-java (5.5.13.3-4) ... 220s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 220s Setting up libxz-java (1.9-1) ... 220s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 220s Setting up fonts-dejavu-core (2.37-8) ... 220s Setting up libpcsclite1:arm64 (2.0.0-1) ... 220s Setting up libintervalstorej-java (1.2+dfsg-5) ... 220s Setting up libmongodb-java (3.6.3-2) ... 220s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 220s Setting up libisorelax-java (20041111-14) ... 220s Setting up libactivation-java (1.2.0-2) ... 220s Setting up libhamcrest-java (2.2-2) ... 220s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 220s Setting up libjsp-api-java (2.3.4-3) ... 220s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 220s Setting up libmimepull-java (1.9.7-2) ... 220s Setting up libapfloat-java (1.13.0-1) ... 220s Setting up libwebp7:arm64 (1.3.2-0.4) ... 220s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 220s Setting up libgif7:arm64 (5.2.1-2.5) ... 220s Setting up libjfreesvg-java (4.1-2) ... 220s Setting up libxshmfence1:arm64 (1.3-1build4) ... 220s Setting up libjsoup-java (1.15.3-1) ... 220s Setting up libmail-java (1.6.5-2) ... 220s Setting up at-spi2-common (2.51.90-2) ... 220s Setting up libcommons-math-java (2.2-8) ... 220s Setting up libxcb-randr0:arm64 (1.15-1) ... 220s Setting up libxml-commons-external-java (1.4.01-6) ... 220s Setting up libxbean-reflect-java (4.5-8) ... 220s Setting up libasound2:arm64 (1.2.10-3build1) ... 220s Setting up libservlet-api-java (4.0.1-2) ... 220s Setting up libjackson2-core-java (2.14.1-1) ... 220s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 220s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 220s Setting up libthai-data (0.1.29-2) ... 220s Setting up libgtk2.0-common (2.24.33-3.1ubuntu1) ... 220s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 220s Setting up libhttpcore-java (4.4.16-1) ... 220s Setting up ca-certificates-java (20240118) ... 220s No JRE found. Skipping Java certificates setup. 220s Setting up libxerces2-java (2.12.2-1) ... 220s Setting up libgmbal-java (4.0.0-b002-1.1) ... 220s Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... 220s Setting up libantlr-java (2.7.7+dfsg-13) ... 220s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 220s Setting up libcdi-api-java (1.2-3) ... 220s Setting up libsnappy-jni (1.1.10.5-1) ... 220s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 220s Setting up libhawtjni-runtime-java (1.18-1) ... 220s Setting up libargs4j-java (2.33-2) ... 220s Setting up libinchi1 (1.03+dfsg-4) ... 220s Setting up libsaaj-java (1.4.0-4) ... 220s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 220s Setting up libnaga-java (3.0+svn80-5) ... 220s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 220s Setting up libdom4j-java (2.1.4-1) ... 220s Setting up libjaxb-api-java (2.3.1-1) ... 220s Setting up libwagon-provider-api-java (3.5.3-1) ... 220s Setting up libxstream-java (1.4.20-1) ... 220s Setting up libjetty9-java (9.4.53-1) ... 220s Setting up libjersey1-client-java (1.19.3-8) ... 220s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 220s Setting up libplexus-languages-java (1.1.1-2) ... 220s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 220s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 220s Setting up libstax-ex-java (1.7.8-3) ... 220s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 220s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 220s Setting up libmaven-parent-java (35-1) ... 220s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 220s Setting up libcommons-parent-java (56-1) ... 220s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 220s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 220s Setting up libcommons-logging-java (1.3.0-1) ... 220s Setting up libsisu-inject-java (0.3.4-2) ... 220s Setting up libciftools-java (5.0.2-1) ... 220s Setting up libjaxws-api-java (2.3.0-1.1) ... 220s Setting up libcommons-lang-java (2.6-10) ... 220s Setting up libjackson2-databind-java (2.14.0-1) ... 220s Setting up libplexus-cipher-java (2.0-1) ... 220s Setting up libcastor-core-java (1.3.2-7) ... 220s Setting up libcommons-jexl2-java (2.1.1-6) ... 220s Setting up libthai0:arm64 (0.1.29-2) ... 220s Setting up libsisu-plexus-java (0.3.4-3) ... 220s Setting up libcastor-xml-java (1.3.2-7) ... 220s Setting up libstreambuffer-java (1.5.4-1.1) ... 220s Setting up libjswingreader-java (0.3-4) ... 220s Setting up libcommons-discovery-java (0.5-4) ... 220s Setting up libcommons-lang3-java (3.14.0-1) ... 220s Setting up librngom-java (2.3.0.1-10.1) ... 220s Setting up libjni-inchi-jni (0.8+dfsg-7) ... 220s Setting up libjansi-native-java (1.8-2) ... 220s Setting up libjgraphx-java (2.1.0.7-3) ... 220s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 220s Setting up libjansi1-java (1.18-3ubuntu1) ... 220s Setting up libplexus-sec-dispatcher-java (2.0-3) ... 220s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 220s Setting up libsnappy-java (1.1.10.5-1) ... 220s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 220s Setting up libxsom-java (2.3.0.1-10.1) ... 220s Setting up libcommons-codec-java (1.16.0-1) ... 220s Setting up libjline2-java (2.14.6-5) ... 220s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 220s Setting up libsaaj-ri-java (1.4.1-1.1) ... 220s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 220s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 220s Setting up fontconfig (2.15.0-1ubuntu1) ... 222s Regenerating fonts cache... done. 222s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 222s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 222s Setting up libglx0:arm64 (1.7.0-1) ... 222s Setting up libcommons-compress-java (1.25.0-1) ... 222s Setting up libcommons-io-java (2.11.0-2) ... 222s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 222s Setting up libvamsas-client-java (0.2+dfsg-2) ... 222s Setting up libcairo2:arm64 (1.18.0-1) ... 222s Setting up libmaven-resolver-java (1.6.3-1) ... 222s Setting up libgl1:arm64 (1.7.0-1) ... 222s Setting up libcommons-httpclient-java (3.1-16) ... 222s Setting up libaxis-java (1.4-29) ... 222s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 222s Setting up libhttpclient-java (4.5.14-1) ... 222s Setting up liblightcouch-java (0.2.0-1) ... 222s Setting up libwagon-http-java (3.5.3-1) ... 222s Setting up libmaven-shared-utils-java (3.3.4-1) ... 222s Setting up libfastinfoset-java (1.2.12-3) ... 222s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 222s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 222s Setting up libapache-mime4j-java (0.8.10-1) ... 222s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 222s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 222s Setting up libplexus-io-java (3.3.1-2) ... 222s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 222s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 222s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 222s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 222s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 222s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 222s Setting up liblog4j2-java (2.19.0-2) ... 222s Setting up libhttpmime-java (4.5.14-1) ... 222s Setting up libplexus-archiver-java (4.6.1-1) ... 222s Setting up libmaven-archiver-java (3.6.0-1) ... 222s Setting up adwaita-icon-theme (46~rc-1) ... 222s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 222s Setting up liberror-prone-java (2.18.0-1) ... 222s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 222s Setting up humanity-icon-theme (0.6.16) ... 222s Setting up libguava-java (32.0.1-1) ... 222s Setting up libplexus-container-default-java (2.1.1-1) ... 222s Setting up ubuntu-mono (24.04-0ubuntu1) ... 222s Setting up libguice-java (4.2.3-2) ... 222s Setting up libmaven3-core-java (3.8.7-2) ... 222s Setting up libmaven-shared-incremental-java (1.1-4) ... 222s Setting up libmaven-shared-io-java (3.0.0-4) ... 222s Setting up libplexus-compiler-java (2.12.1-2) ... 222s Setting up libmaven-compiler-plugin-java (3.10.1-2) ... 222s Setting up libjni-inchi-java (0.8+dfsg-7) ... 222s Setting up libmaven-file-management-java (3.0.0-1) ... 222s Setting up libjmol-java (14.32.83+dfsg-3) ... 222s Setting up libmaven-jar-plugin-java (3.3.0-2) ... 222s Setting up libcommons-text-java (1.11.0-1) ... 222s Setting up libmsgpack-java (0.9.6-1) ... 222s Setting up libmmtf-java (1.0.11-1) ... 222s Setting up libjgrapht-java (1.5.2-1) ... 222s Processing triggers for libc-bin (2.39-0ubuntu2) ... 222s Processing triggers for man-db (2.12.0-3) ... 223s Processing triggers for shared-mime-info (2.4-1) ... 224s Processing triggers for ca-certificates-java (20240118) ... 225s Adding debian:ACCVRAIZ1.pem 225s Adding debian:AC_RAIZ_FNMT-RCM.pem 225s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 225s Adding debian:ANF_Secure_Server_Root_CA.pem 225s Adding debian:Actalis_Authentication_Root_CA.pem 225s Adding debian:AffirmTrust_Commercial.pem 225s Adding debian:AffirmTrust_Networking.pem 225s Adding debian:AffirmTrust_Premium.pem 225s Adding debian:AffirmTrust_Premium_ECC.pem 225s Adding debian:Amazon_Root_CA_1.pem 225s Adding debian:Amazon_Root_CA_2.pem 225s Adding debian:Amazon_Root_CA_3.pem 225s Adding debian:Amazon_Root_CA_4.pem 225s Adding debian:Atos_TrustedRoot_2011.pem 225s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 225s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 225s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 225s Adding debian:BJCA_Global_Root_CA1.pem 225s Adding debian:BJCA_Global_Root_CA2.pem 225s Adding debian:Baltimore_CyberTrust_Root.pem 225s Adding debian:Buypass_Class_2_Root_CA.pem 225s Adding debian:Buypass_Class_3_Root_CA.pem 225s Adding debian:CA_Disig_Root_R2.pem 225s Adding debian:CFCA_EV_ROOT.pem 225s Adding debian:COMODO_Certification_Authority.pem 225s Adding debian:COMODO_ECC_Certification_Authority.pem 225s Adding debian:COMODO_RSA_Certification_Authority.pem 225s Adding debian:Certainly_Root_E1.pem 225s Adding debian:Certainly_Root_R1.pem 225s Adding debian:Certigna.pem 225s Adding debian:Certigna_Root_CA.pem 225s Adding debian:Certum_EC-384_CA.pem 225s Adding debian:Certum_Trusted_Network_CA.pem 225s Adding debian:Certum_Trusted_Network_CA_2.pem 225s Adding debian:Certum_Trusted_Root_CA.pem 225s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 225s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 225s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 225s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 225s Adding debian:Comodo_AAA_Services_root.pem 225s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 225s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 225s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 225s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 225s Adding debian:DigiCert_Assured_ID_Root_CA.pem 225s Adding debian:DigiCert_Assured_ID_Root_G2.pem 225s Adding debian:DigiCert_Assured_ID_Root_G3.pem 225s Adding debian:DigiCert_Global_Root_CA.pem 225s Adding debian:DigiCert_Global_Root_G2.pem 225s Adding debian:DigiCert_Global_Root_G3.pem 225s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 225s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 225s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 225s Adding debian:DigiCert_Trusted_Root_G4.pem 225s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 225s Adding debian:Entrust_Root_Certification_Authority.pem 225s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 225s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 225s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 225s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 225s Adding debian:GLOBALTRUST_2020.pem 225s Adding debian:GTS_Root_R1.pem 225s Adding debian:GTS_Root_R2.pem 225s Adding debian:GTS_Root_R3.pem 225s Adding debian:GTS_Root_R4.pem 225s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 225s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 225s Adding debian:GlobalSign_Root_CA.pem 225s Adding debian:GlobalSign_Root_CA_-_R3.pem 225s Adding debian:GlobalSign_Root_CA_-_R6.pem 225s Adding debian:GlobalSign_Root_E46.pem 225s Adding debian:GlobalSign_Root_R46.pem 225s Adding debian:Go_Daddy_Class_2_CA.pem 225s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 225s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 225s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 225s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 225s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 225s Adding debian:HiPKI_Root_CA_-_G1.pem 225s Adding debian:Hongkong_Post_Root_CA_3.pem 225s Adding debian:ISRG_Root_X1.pem 225s Adding debian:ISRG_Root_X2.pem 225s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 225s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 225s Adding debian:Izenpe.com.pem 225s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 225s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 225s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 225s Adding debian:NAVER_Global_Root_Certification_Authority.pem 225s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 225s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 225s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 225s Adding debian:QuoVadis_Root_CA_1_G3.pem 225s Adding debian:QuoVadis_Root_CA_2.pem 225s Adding debian:QuoVadis_Root_CA_2_G3.pem 225s Adding debian:QuoVadis_Root_CA_3.pem 225s Adding debian:QuoVadis_Root_CA_3_G3.pem 225s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 226s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 226s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 226s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 226s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 226s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 226s Adding debian:SZAFIR_ROOT_CA2.pem 226s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 226s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 226s Adding debian:SecureSign_RootCA11.pem 226s Adding debian:SecureTrust_CA.pem 226s Adding debian:Secure_Global_CA.pem 226s Adding debian:Security_Communication_ECC_RootCA1.pem 226s Adding debian:Security_Communication_RootCA2.pem 226s Adding debian:Security_Communication_RootCA3.pem 226s Adding debian:Security_Communication_Root_CA.pem 226s Adding debian:Starfield_Class_2_CA.pem 226s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 226s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 226s Adding debian:SwissSign_Gold_CA_-_G2.pem 226s Adding debian:SwissSign_Silver_CA_-_G2.pem 226s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 226s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 226s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 226s Adding debian:TWCA_Global_Root_CA.pem 226s Adding debian:TWCA_Root_Certification_Authority.pem 226s Adding debian:TeliaSonera_Root_CA_v1.pem 226s Adding debian:Telia_Root_CA_v2.pem 226s Adding debian:TrustAsia_Global_Root_CA_G3.pem 226s Adding debian:TrustAsia_Global_Root_CA_G4.pem 226s Adding debian:Trustwave_Global_Certification_Authority.pem 226s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 226s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 226s Adding debian:TunTrust_Root_CA.pem 226s Adding debian:UCA_Extended_Validation_Root.pem 226s Adding debian:UCA_Global_G2_Root.pem 226s Adding debian:USERTrust_ECC_Certification_Authority.pem 226s Adding debian:USERTrust_RSA_Certification_Authority.pem 226s Adding debian:XRamp_Global_CA_Root.pem 226s Adding debian:certSIGN_ROOT_CA.pem 226s Adding debian:certSIGN_Root_CA_G2.pem 226s Adding debian:e-Szigno_Root_CA_2017.pem 226s Adding debian:ePKI_Root_Certification_Authority.pem 226s Adding debian:emSign_ECC_Root_CA_-_C3.pem 226s Adding debian:emSign_ECC_Root_CA_-_G3.pem 226s Adding debian:emSign_Root_CA_-_C1.pem 226s Adding debian:emSign_Root_CA_-_G1.pem 226s Adding debian:vTrus_ECC_Root_CA.pem 226s Adding debian:vTrus_Root_CA.pem 226s done. 226s Setting up ant (1.10.14-1) ... 226s Setting up libmsv-java (2009.1+dfsg1-6) ... 226s Setting up junit4 (4.13.2-4) ... 226s Setting up default-jre-headless (2:1.21-75+exp1) ... 226s Setting up varna (3-93+ds-5) ... 226s Setting up ant-optional (1.10.14-1) ... 226s Setting up libwoodstox-java (1:6.2.1-1) ... 226s Setting up antlr (2.7.7+dfsg-13) ... 226s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 226s Setting up ivy (2.5.2-1) ... 226s Setting up javahelp2 (2.0.05.ds1-10) ... 226s Setting up groovy (2.4.21-10) ... 226s update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode 226s update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode 226s update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode 226s update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode 226s update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode 226s update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode 226s update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode 226s update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode 226s Setting up libistack-commons-java (3.0.6-5) ... 226s Setting up default-jre (2:1.21-75+exp1) ... 226s Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 226s Setting up libtxw2-java (2.3.0.1-10.1) ... 226s Setting up libjaxb-java (2.3.0.1-10.1) ... 226s Setting up libmetro-policy-java (2.7.2-3ubuntu1) ... 226s Setting up libbiojava6-java (6.1.0+dfsg-4) ... 226s Setting up libjaba-client-java (2.2.0-2) ... 226s Setting up libjaxws-java (2.3.0.2-2) ... 226s Setting up jalview (2.11.3.1+dfsg-1) ... 226s Setting up autopkgtest-satdep (0) ... 238s (Reading database ... 92967 files and directories currently installed.) 238s Removing autopkgtest-satdep (0) ... 239s autopkgtest [14:10:22]: test someCommandLineInvocations: [----------------------- 244s Could not obtain JAVA_COMPILE_VERSION for comparison 244s Could not make Java version check 246s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 246s Cannot get screen resolution: 246s No X11 DISPLAY variable was set, 246s or no headful library support was found, 246s but this program performed an operation which requires it, 246s 246s Cannot get screen size height and width: 246s No X11 DISPLAY variable was set, 246s or no headful library support was found, 246s but this program performed an operation which requires it, 246s 246s Java version: 21.0.2 246s Java home: /usr/lib/jvm/java-21-openjdk-arm64 246s Java arch: aarch64 Linux 6.8.0-11-generic 246s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 246s Falling back to properties file '/home/ubuntu/.jalview_properties' 246s Could not load bootstrap preferences file '/home/ubuntu/.jalview_properties' 246s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 246s Setting initial log level to INFO 247s Error reading properties file: java.io.FileNotFoundException: /home/ubuntu/.jalview_nonrelease_properties (No such file or directory) 247s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 247s SLF4J: Defaulting to no-operation (NOP) logger implementation 247s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 247s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (123ms) 247s INFO - Getting messages for lang: en 247s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 247s WARN - Error when running commands 247s Could not obtain JAVA_COMPILE_VERSION for comparison 247s Could not make Java version check 247s CMD [-open /tmp/autopkgtest.YyldQW/build.fcn/src/examples/uniref50.fa] executed successfully! 248s Written alignment in BLC format to uniref50_out.blc 249s Could not obtain JAVA_COMPILE_VERSION for comparison 249s Could not make Java version check 250s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 250s Cannot get screen resolution: 250s No X11 DISPLAY variable was set, 250s or no headful library support was found, 250s but this program performed an operation which requires it, 250s 250s Cannot get screen size height and width: 250s No X11 DISPLAY variable was set, 250s or no headful library support was found, 250s but this program performed an operation which requires it, 250s 250s Java version: 21.0.2 250s Java home: /usr/lib/jvm/java-21-openjdk-arm64 250s Java arch: aarch64 Linux 6.8.0-11-generic 250s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 250s Falling back to properties file '/home/ubuntu/.jalview_properties' 250s Could not load bootstrap preferences file '/home/ubuntu/.jalview_properties' 250s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 250s Setting initial log level to INFO 251s Error reading properties file: java.io.FileNotFoundException: /home/ubuntu/.jalview_nonrelease_properties (No such file or directory) 251s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 251s SLF4J: Defaulting to no-operation (NOP) logger implementation 251s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 251s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (224ms) 251s INFO - Getting messages for lang: en 251s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 251s WARN - Error when running commands 251s Could not obtain JAVA_COMPILE_VERSION for comparison 251s Could not make Java version check 251s CMD [-open /tmp/autopkgtest.YyldQW/build.fcn/src/examples/uniref50.fa] executed successfully! 252s Written alignment in Fasta format to uniref50_out.mfa 253s Could not obtain JAVA_COMPILE_VERSION for comparison 253s Could not make Java version check 253s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 253s Cannot get screen resolution: 253s No X11 DISPLAY variable was set, 253s or no headful library support was found, 253s but this program performed an operation which requires it, 253s 253s Cannot get screen size height and width: 253s No X11 DISPLAY variable was set, 253s or no headful library support was found, 253s but this program performed an operation which requires it, 253s 254s Java version: 21.0.2 254s Java home: /usr/lib/jvm/java-21-openjdk-arm64 254s Java arch: aarch64 Linux 6.8.0-11-generic 254s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 254s Falling back to properties file '/home/ubuntu/.jalview_properties' 254s Could not load bootstrap preferences file '/home/ubuntu/.jalview_properties' 254s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 254s Setting initial log level to INFO 254s Error reading properties file: java.io.FileNotFoundException: /home/ubuntu/.jalview_nonrelease_properties (No such file or directory) 254s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 254s SLF4J: Defaulting to no-operation (NOP) logger implementation 254s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 255s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (521ms) 255s INFO - Getting messages for lang: en 255s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 255s WARN - Error when running commands 255s Could not obtain JAVA_COMPILE_VERSION for comparison 255s Could not make Java version check 255s CMD [-open /tmp/autopkgtest.YyldQW/build.fcn/src/examples/uniref50.fa] executed successfully! 256s Written alignment in PFAM format to uniref50_out.pfam 257s Could not obtain JAVA_COMPILE_VERSION for comparison 257s Could not make Java version check 257s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 257s Cannot get screen resolution: 257s No X11 DISPLAY variable was set, 257s or no headful library support was found, 257s but this program performed an operation which requires it, 257s 257s Cannot get screen size height and width: 257s No X11 DISPLAY variable was set, 257s or no headful library support was found, 257s but this program performed an operation which requires it, 257s 257s Java version: 21.0.2 257s Java home: /usr/lib/jvm/java-21-openjdk-arm64 257s Java arch: aarch64 Linux 6.8.0-11-generic 258s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 258s Falling back to properties file '/home/ubuntu/.jalview_properties' 258s Could not load bootstrap preferences file '/home/ubuntu/.jalview_properties' 258s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 258s Setting initial log level to INFO 258s Error reading properties file: java.io.FileNotFoundException: /home/ubuntu/.jalview_nonrelease_properties (No such file or directory) 258s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 258s SLF4J: Defaulting to no-operation (NOP) logger implementation 258s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 258s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (152ms) 258s INFO - Getting messages for lang: en 258s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 258s WARN - Error when running commands 258s Could not obtain JAVA_COMPILE_VERSION for comparison 258s Could not make Java version check 258s CMD [-open /tmp/autopkgtest.YyldQW/build.fcn/src/examples/uniref50.fa] executed successfully! 259s Written alignment in PIR format to uniref50_out.pir 260s Could not obtain JAVA_COMPILE_VERSION for comparison 260s Could not make Java version check 260s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 260s Cannot get screen resolution: 260s No X11 DISPLAY variable was set, 260s or no headful library support was found, 260s but this program performed an operation which requires it, 260s 260s Cannot get screen size height and width: 260s No X11 DISPLAY variable was set, 260s or no headful library support was found, 260s but this program performed an operation which requires it, 260s 261s Java version: 21.0.2 261s Java home: /usr/lib/jvm/java-21-openjdk-arm64 261s Java arch: aarch64 Linux 6.8.0-11-generic 261s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 261s Falling back to properties file '/home/ubuntu/.jalview_properties' 261s Could not load bootstrap preferences file '/home/ubuntu/.jalview_properties' 261s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 261s Setting initial log level to INFO 262s Error reading properties file: java.io.FileNotFoundException: /home/ubuntu/.jalview_nonrelease_properties (No such file or directory) 262s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 262s SLF4J: Defaulting to no-operation (NOP) logger implementation 262s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 262s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (281ms) 262s INFO - Getting messages for lang: en 262s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 262s WARN - Error when running commands 262s Could not obtain JAVA_COMPILE_VERSION for comparison 262s Could not make Java version check 262s CMD [-open /tmp/autopkgtest.YyldQW/build.fcn/src/examples/uniref50.fa] executed successfully! 263s Written alignment in Clustal format to uniref50_out1.aln 264s Could not obtain JAVA_COMPILE_VERSION for comparison 264s Could not make Java version check 264s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 264s Cannot get screen resolution: 264s No X11 DISPLAY variable was set, 264s or no headful library support was found, 264s but this program performed an operation which requires it, 264s 264s Cannot get screen size height and width: 264s No X11 DISPLAY variable was set, 264s or no headful library support was found, 264s but this program performed an operation which requires it, 264s 264s Java version: 21.0.2 264s Java home: /usr/lib/jvm/java-21-openjdk-arm64 264s Java arch: aarch64 Linux 6.8.0-11-generic 264s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 264s Falling back to properties file '/home/ubuntu/.jalview_properties' 264s Could not load bootstrap preferences file '/home/ubuntu/.jalview_properties' 264s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 264s Setting initial log level to INFO 265s Error reading properties file: java.io.FileNotFoundException: /home/ubuntu/.jalview_nonrelease_properties (No such file or directory) 265s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 265s SLF4J: Defaulting to no-operation (NOP) logger implementation 265s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 265s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (122ms) 265s INFO - Getting messages for lang: en 265s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 265s WARN - Error when running commands 265s Could not obtain JAVA_COMPILE_VERSION for comparison 265s Could not make Java version check 265s CMD [-open /tmp/autopkgtest.YyldQW/build.fcn/src/examples/uniref50.fa] executed successfully! 266s Written alignment in PileUp format to uniref50_out2.aln 267s autopkgtest [14:10:50]: test someCommandLineInvocations: -----------------------] 268s someCommandLineInvocations PASS 268s autopkgtest [14:10:51]: test someCommandLineInvocations: - - - - - - - - - - results - - - - - - - - - - 268s autopkgtest [14:10:51]: test run-unit-test: preparing testbed 273s Reading package lists... 273s Building dependency tree... 273s Reading state information... 273s Starting pkgProblemResolver with broken count: 0 274s Starting 2 pkgProblemResolver with broken count: 0 274s Done 275s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 275s 1 not fully installed or removed. 275s After this operation, 0 B of additional disk space will be used. 275s Setting up autopkgtest-satdep (0) ... 278s (Reading database ... 92967 files and directories currently installed.) 278s Removing autopkgtest-satdep (0) ... 279s autopkgtest [14:11:02]: test run-unit-test: [----------------------- 279s Could not obtain JAVA_COMPILE_VERSION for comparison 279s Could not make Java version check 279s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 279s Cannot get screen resolution: 279s No X11 DISPLAY variable was set, 279s or no headful library support was found, 279s but this program performed an operation which requires it, 279s 279s Cannot get screen size height and width: 279s No X11 DISPLAY variable was set, 279s or no headful library support was found, 279s but this program performed an operation which requires it, 279s 280s Java version: 21.0.2 280s Java home: /usr/lib/jvm/java-21-openjdk-arm64 280s Java arch: aarch64 Linux 6.8.0-11-generic 280s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 280s Falling back to properties file '/home/ubuntu/.jalview_properties' 280s Could not load bootstrap preferences file '/home/ubuntu/.jalview_properties' 280s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 280s Setting initial log level to INFO 280s Error reading properties file: java.io.FileNotFoundException: /home/ubuntu/.jalview_nonrelease_properties (No such file or directory) 280s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 280s SLF4J: Defaulting to no-operation (NOP) logger implementation 280s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 280s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (175ms) 280s INFO - Getting messages for lang: en 281s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 281s CMD [-open uniref50.fa] executed successfully! 281s WARN - Error when running commands 281s Could not obtain JAVA_COMPILE_VERSION for comparison 281s Could not make Java version check 281s Creating EPS file: /tmp/autopkgtest.YyldQW/autopkgtest_tmp/uniref50_out.eps 282s Output generated in eps format in /tmp/autopkgtest.YyldQW/autopkgtest_tmp/uniref50_out.eps 282s Could not obtain JAVA_COMPILE_VERSION for comparison 282s Could not make Java version check 282s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 282s Cannot get screen resolution: 282s No X11 DISPLAY variable was set, 282s or no headful library support was found, 282s but this program performed an operation which requires it, 282s 282s Cannot get screen size height and width: 282s No X11 DISPLAY variable was set, 282s or no headful library support was found, 282s but this program performed an operation which requires it, 282s 283s Java version: 21.0.2 283s Java home: /usr/lib/jvm/java-21-openjdk-arm64 283s Java arch: aarch64 Linux 6.8.0-11-generic 283s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 283s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 283s Setting initial log level to INFO 284s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 284s SLF4J: Defaulting to no-operation (NOP) logger implementation 284s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 284s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (201ms) 284s INFO - Getting messages for lang: en 284s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 284s CMD [-open uniref50.fa] executed successfully! 284s WARN - Error when running commands 284s Could not obtain JAVA_COMPILE_VERSION for comparison 284s Could not make Java version check 284s Creating HTML image: uniref50_out.html 284s Exporting alignment as HTML file 284s java.io.FileNotFoundException: /tmp/autopkgtest.YyldQW/autopkgtest_tmp/examples/javascript/facebox-1.3.js (No such file or directory) 284s at java.base/java.io.FileInputStream.open0(Native Method) 284s at java.base/java.io.FileInputStream.open(FileInputStream.java:213) 284s at java.base/java.io.FileInputStream.(FileInputStream.java:152) 284s at java.base/java.io.FileInputStream.(FileInputStream.java:106) 284s at java.base/sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:84) 284s at java.base/sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:180) 284s at java.base/java.net.URL.openStream(URL.java:1325) 284s at jalview.io.HTMLOutput.readFileAsString(HTMLOutput.java:121) 284s at jalview.io.HtmlSvgOutput.getHtml(HtmlSvgOutput.java:177) 284s at jalview.io.HtmlSvgOutput.doOutput(HtmlSvgOutput.java:301) 284s at jalview.io.HtmlSvgOutput.run(HtmlSvgOutput.java:248) 284s at jalview.io.HTMLOutput.exportHTML(HTMLOutput.java:342) 284s at jalview.io.HTMLOutput.exportHTML(HTMLOutput.java:308) 284s at jalview.bin.Jalview.doMain(Jalview.java:1039) 284s at jalview.bin.Jalview.main(Jalview.java:253) 284s HTML Export completed 285s Output generated in html format in /tmp/autopkgtest.YyldQW/autopkgtest_tmp/uniref50_out.html 285s Could not obtain JAVA_COMPILE_VERSION for comparison 285s Could not make Java version check 286s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (3554123776). 286s Cannot get screen resolution: 286s No X11 DISPLAY variable was set, 286s or no headful library support was found, 286s but this program performed an operation which requires it, 286s 286s Cannot get screen size height and width: 286s No X11 DISPLAY variable was set, 286s or no headful library support was found, 286s but this program performed an operation which requires it, 286s 286s Java version: 21.0.2 286s Java home: /usr/lib/jvm/java-21-openjdk-arm64 286s Java arch: aarch64 Linux 6.8.0-11-generic 286s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 286s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 286s Setting initial log level to INFO 287s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 287s SLF4J: Defaulting to no-operation (NOP) logger implementation 287s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 287s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (149ms) 287s INFO - Getting messages for lang: en 287s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 287s WARN - Error when running commands 287s Could not obtain JAVA_COMPILE_VERSION for comparison 287s CMD [-open uniref50.fa] executed successfully! 287s Could not make Java version check 287s Creating PNG image: uniref50_out.png 288s Output generated in png format in /tmp/autopkgtest.YyldQW/autopkgtest_tmp/uniref50_out.png 289s autopkgtest [14:11:12]: test run-unit-test: -----------------------] 289s run-unit-test PASS 289s autopkgtest [14:11:12]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 290s autopkgtest [14:11:13]: @@@@@@@@@@@@@@@@@@@@ summary 290s someCommandLineInvocations PASS 290s run-unit-test PASS 301s Creating nova instance adt-noble-arm64-jalview-20240309-140623-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240308.img (UUID ddbc0ee7-bb97-4aa3-b5e1-9386758c2ba2)...