0s autopkgtest [17:30:14]: starting date and time: 2024-03-24 17:30:14+0000 0s autopkgtest [17:30:14]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [17:30:14]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.28pwdltj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade ivar --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-6.secgroup --name adt-noble-arm64-ivar-20240324-173013-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 112s autopkgtest [17:32:06]: testbed dpkg architecture: arm64 113s autopkgtest [17:32:07]: testbed apt version: 2.7.12 113s autopkgtest [17:32:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 114s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 114s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 115s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 116s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 116s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 116s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 116s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 116s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 116s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 116s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 117s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 117s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 117s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 122s Fetched 9850 kB in 4s (2446 kB/s) 123s Reading package lists... 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 128s Calculating upgrade... 129s The following packages will be REMOVED: 129s libssl3 129s The following NEW packages will be installed: 129s libssl3t64 129s The following packages have been kept back: 129s curl 129s The following packages will be upgraded: 129s openssl 130s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 130s Need to get 2777 kB of archives. 130s After this operation, 139 kB of additional disk space will be used. 130s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 130s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 131s Fetched 2777 kB in 1s (3509 kB/s) 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 131s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 131s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 131s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 131s wget depends on libssl3 (>= 3.0.0). 131s u-boot-tools depends on libssl3 (>= 3.0.0). 131s tnftp depends on libssl3 (>= 3.0.0). 131s tcpdump depends on libssl3 (>= 3.0.0). 132s systemd-resolved depends on libssl3 (>= 3.0.0). 132s systemd depends on libssl3 (>= 3.0.0). 132s sudo depends on libssl3 (>= 3.0.0). 132s sbsigntool depends on libssl3 (>= 3.0.0). 132s rsync depends on libssl3 (>= 3.0.0). 132s python3-cryptography depends on libssl3 (>= 3.0.0). 132s openssh-server depends on libssl3 (>= 3.0.10). 132s openssh-client depends on libssl3 (>= 3.0.10). 132s mtd-utils depends on libssl3 (>= 3.0.0). 132s mokutil depends on libssl3 (>= 3.0.0). 132s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 132s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 132s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 132s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 132s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 132s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 132s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 132s libnvme1 depends on libssl3 (>= 3.0.0). 132s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 132s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 132s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 132s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 132s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 132s kmod depends on libssl3 (>= 3.0.0). 132s dhcpcd-base depends on libssl3 (>= 3.0.0). 132s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 132s 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 132s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 132s Selecting previously unselected package libssl3t64:arm64. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 132s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 132s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 132s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 132s Setting up openssl (3.0.13-0ubuntu2) ... 132s Processing triggers for man-db (2.12.0-3) ... 133s Processing triggers for libc-bin (2.39-0ubuntu6) ... 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 136s sh: Attempting to set up Debian/Ubuntu apt sources automatically 136s sh: Distribution appears to be Ubuntu 138s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s eatmydata is already the newest version (131-1). 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s dbus is already the newest version (1.14.10-4ubuntu1). 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 144s rng-tools-debian is already the newest version (2.4). 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 146s The following packages will be REMOVED: 146s cloud-init* python3-configobj* python3-debconf* 146s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 146s After this operation, 3256 kB disk space will be freed. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 147s Removing cloud-init (24.1.2-0ubuntu1) ... 148s Removing python3-configobj (5.0.8-3) ... 148s Removing python3-debconf (1.5.86) ... 148s Processing triggers for man-db (2.12.0-3) ... 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 149s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 150s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 150s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 150s invoke-rc.d: policy-rc.d denied execution of try-restart. 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s linux-generic is already the newest version (6.8.0-11.11+1). 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 153s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 153s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 158s Reading package lists... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s Calculating upgrade... 161s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 163s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 163s autopkgtest [17:32:57]: rebooting testbed after setup commands that affected boot 326s autopkgtest [17:35:40]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 329s autopkgtest [17:35:43]: @@@@@@@@@@@@@@@@@@@@ apt-source ivar 332s Get:1 http://ftpmaster.internal/ubuntu noble/universe ivar 1.4.2+dfsg-2ubuntu1 (dsc) [2168 B] 332s Get:2 http://ftpmaster.internal/ubuntu noble/universe ivar 1.4.2+dfsg-2ubuntu1 (tar) [673 kB] 332s Get:3 http://ftpmaster.internal/ubuntu noble/universe ivar 1.4.2+dfsg-2ubuntu1 (diff) [46.3 kB] 332s gpgv: Signature made Wed Oct 4 11:43:34 2023 UTC 332s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 332s gpgv: Can't check signature: No public key 332s dpkg-source: warning: cannot verify inline signature for ./ivar_1.4.2+dfsg-2ubuntu1.dsc: no acceptable signature found 333s autopkgtest [17:35:47]: testing package ivar version 1.4.2+dfsg-2ubuntu1 333s autopkgtest [17:35:47]: build not needed 334s autopkgtest [17:35:48]: test run-unit-test: preparing testbed 339s Reading package lists... 340s Building dependency tree... 340s Reading state information... 341s Starting pkgProblemResolver with broken count: 0 341s Starting 2 pkgProblemResolver with broken count: 0 341s Done 342s The following additional packages will be installed: 342s ivar ivar-doc libdeflate0 libhts3 libhtscodecs2 node-jquery samtools 342s Suggested packages: 342s cwltool 342s Recommended packages: 342s libjs-sizzle 342s The following NEW packages will be installed: 342s autopkgtest-satdep ivar ivar-doc libdeflate0 libhts3 libhtscodecs2 342s node-jquery samtools 342s 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. 342s Need to get 1769 kB/1769 kB of archives. 342s After this operation, 7258 kB of additional disk space will be used. 342s Get:1 /tmp/autopkgtest.4TnAgF/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 342s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 343s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 343s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 343s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 ivar arm64 1.4.2+dfsg-2ubuntu1 [223 kB] 343s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 node-jquery all 3.6.1+dfsg+~3.5.14-1 [160 kB] 343s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 ivar-doc all 1.4.2+dfsg-2ubuntu1 [257 kB] 343s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 samtools arm64 1.19.2-1 [584 kB] 344s Fetched 1769 kB in 1s (2498 kB/s) 344s Selecting previously unselected package libdeflate0:arm64. 344s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 344s Preparing to unpack .../0-libdeflate0_1.19-1_arm64.deb ... 344s Unpacking libdeflate0:arm64 (1.19-1) ... 344s Selecting previously unselected package libhtscodecs2:arm64. 344s Preparing to unpack .../1-libhtscodecs2_1.6.0-1_arm64.deb ... 344s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 344s Selecting previously unselected package libhts3:arm64. 344s Preparing to unpack .../2-libhts3_1.18+ds-1_arm64.deb ... 344s Unpacking libhts3:arm64 (1.18+ds-1) ... 344s Selecting previously unselected package ivar. 344s Preparing to unpack .../3-ivar_1.4.2+dfsg-2ubuntu1_arm64.deb ... 344s Unpacking ivar (1.4.2+dfsg-2ubuntu1) ... 344s Selecting previously unselected package node-jquery. 344s Preparing to unpack .../4-node-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 344s Unpacking node-jquery (3.6.1+dfsg+~3.5.14-1) ... 344s Selecting previously unselected package ivar-doc. 344s Preparing to unpack .../5-ivar-doc_1.4.2+dfsg-2ubuntu1_all.deb ... 344s Unpacking ivar-doc (1.4.2+dfsg-2ubuntu1) ... 344s Selecting previously unselected package samtools. 344s Preparing to unpack .../6-samtools_1.19.2-1_arm64.deb ... 344s Unpacking samtools (1.19.2-1) ... 344s Selecting previously unselected package autopkgtest-satdep. 344s Preparing to unpack .../7-1-autopkgtest-satdep.deb ... 344s Unpacking autopkgtest-satdep (0) ... 344s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 344s Setting up libdeflate0:arm64 (1.19-1) ... 344s Setting up node-jquery (3.6.1+dfsg+~3.5.14-1) ... 344s Setting up libhts3:arm64 (1.18+ds-1) ... 344s Setting up samtools (1.19.2-1) ... 344s Setting up ivar-doc (1.4.2+dfsg-2ubuntu1) ... 344s Setting up ivar (1.4.2+dfsg-2ubuntu1) ... 344s Setting up autopkgtest-satdep (0) ... 344s Processing triggers for man-db (2.12.0-3) ... 345s Processing triggers for libc-bin (2.39-0ubuntu6) ... 351s (Reading database ... 75823 files and directories currently installed.) 351s Removing autopkgtest-satdep (0) ... 351s autopkgtest [17:36:05]: test run-unit-test: [----------------------- 352s .: 352s data 352s ref 352s 352s ./data: 352s db 352s pair_info_2.tsv 352s pair_information.tsv 352s primer_only 352s primer_pair_test 352s test.bed 352s test.filtered.tsv 352s test.gap.fa 352s test.gap.qual.txt 352s test.gap.sorted.bam 352s test.gap.sorted.bam.bai 352s test.gap.sorted.mpileup 352s test.gff 352s test.indel.mpileup 352s test.indel.tsv 352s test.indel2.tsv 352s test.indel3.tsv 352s test.indel4.tsv 352s test.masked_primer_indices.txt 352s test.sim.merged.sorted.bam 352s test.sim.merged.sorted.bam.bai 352s test.sorted.bam 352s test.sorted.bam.bai 352s test.trimmed.masked.bam 352s test.trimmed.masked.bam.bai 352s test.trimmed.sorted.bam 352s test.trimmed.sorted.bam.bai 352s test.unmapped.sorted.bam 352s test.unmapped.sorted.bam.bai 352s test_amplicon.sorted.bam 352s test_isize.bed 352s test_isize.sorted.bam 352s test_merged.bed 352s trim_isize.bam 352s 352s ./data/db: 352s test_ref.fa 352s test_ref.fa.fai 352s 352s ./data/primer_only: 352s primer_edge_cases.bam 352s primer_edge_cases.bam.bai 352s 352s ./data/primer_pair_test: 352s test_primer_pair.bed 352s test_primer_pair_trim.tsv 352s test_primer_pair_trim.untrimmed.bam 352s 352s ./ref: 352s README.test_data 352s out-consensus.fa 352s out-consensus.qual.txt 352s out-filtered.tsv 352s out-getmasked.txt 352s out-removereads.sam 352s out-trim.sam 352s out-trim2.sam 352s out-variants.tsv 352s Test 1 352s Found 8 primers in BED file 352s Reading from data/test.sorted.bam 352s Minimum Read Length based on 6 reads: 73 352s 352s ------- 352s Results: 352s Primer Name Read Count 352s WNV_400_1_LEFT 0 352s WNV_400_1_LEFT_alt 0 352s WNV_400_2_LEFT 0 352s WNV_400_1_RIGHT 0 352s WNV_400_2_RIGHT 0 352s WNV_400_3_LEFT 0 352s WNV_400_2_LEFT_alt 0 352s WNV_400_2_RIGHT_alt 1 352s 352s Trimmed primers from 20% (1) of reads. 352s 20% (1) of reads were quality trimmed below the minimum length of 73 bp and were not written to file. 352s 60% (3) of reads that started outside of primer regions were not written to file 352s 40% (2) of reads had their insert size smaller than their read length 352s Passed 352s 352s Test 2 352s Found 8 primers in BED file 352s Reading from data/test.sorted.bam 352s 352s ------- 352s Results: 352s Primer Name Read Count 352s WNV_400_1_LEFT 1 352s WNV_400_1_LEFT_alt 0 352s WNV_400_2_LEFT 0 352s WNV_400_1_RIGHT 0 352s WNV_400_2_RIGHT 0 352s WNV_400_3_LEFT 0 352s WNV_400_2_LEFT_alt 0 352s WNV_400_2_RIGHT_alt 1 352s 352s Trimmed primers from 33.33% (2) of reads. 352s 16.67% (1) of reads were quality trimmed below the minimum length of 50 bp and were not written to file. 352s 50% (3) of reads that started outside of primer regions were not written to file 352s 33.33% (2) of reads had their insert size smaller than their read length 352s Passed 352s 352s Test 3 352s [mpileup] 1 samples in 1 input files 352s A GFF file containing the open reading frames (ORFs) has not been provided. Amino acid translation will not be done. 352s A reference sequence has not been supplied. Amino acid translation will not be done. 352s Passed 352s 352s Test 4 352s Header format of out-variants.tsv did not match! Please use files generated using "ivar variants" command. 352s Passed 352s 352s Test 5 352s [mpileup] 1 samples in 1 input files 352s Minimum Quality: 20 352s Threshold: 0 352s Minimum depth: 10 352s Minimum Insert Threshold: 0.8 352s Regions with depth less than minimum depth covered by: N 352s Reference length: 356 352s Positions with 0 depth: 0 352s Positions with depth below 10: 356 352s Passed 352s 352s Test 6 352s Found 8 primers in BED file 352s WNV_400_2_LEFT 352s WNV_400_2_LEFT_alt 352s WNV_400_1_LEFT 352s WNV_400_1_LEFT_alt 352s WNV_400_3_LEFT 352s WNV_400_2_LEFT WNV_400_2_LEFT_alt WNV_400_1_LEFT WNV_400_1_LEFT_alt WNV_400_3_LEFT 352s Passed 352s 352s Test 7 352s Found 8 primers in BED file 352s [E::idx_find_and_load] Could not retrieve index file for 'out-trim.bam' 352s Writing to out-removereads.bam 352s Number of references: 1 352s Reference Name: test 352s Reference Length: 401 352s Using Region: test 352s Sorted By Coordinate 352s Results: 352s 0 reads were removed. 352s Passed 352s 352s autopkgtest [17:36:06]: test run-unit-test: -----------------------] 353s autopkgtest [17:36:07]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 353s run-unit-test PASS 353s autopkgtest [17:36:07]: @@@@@@@@@@@@@@@@@@@@ summary 353s run-unit-test PASS 367s Creating nova instance adt-noble-arm64-ivar-20240324-173013-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)...