0s autopkgtest [18:22:16]: starting date and time: 2024-03-24 18:22:16+0000 0s autopkgtest [18:22:16]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [18:22:16]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nhu_m604/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sra-sdk,src:curl,src:file,src:hdf5,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=sra-sdk/3.0.3+dfsg-6ubuntu4 curl/8.5.0-2ubuntu7 file/1:5.45-3 hdf5/1.10.10+repack-3.1ubuntu3 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu2 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-16.secgroup --name adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 99s autopkgtest [18:23:55]: testbed dpkg architecture: arm64 99s autopkgtest [18:23:55]: testbed apt version: 2.7.12 99s autopkgtest [18:23:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 101s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 102s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 102s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [710 kB] 102s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 102s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 102s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 102s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 102s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 102s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 102s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 107s Fetched 9851 kB in 3s (3250 kB/s) 108s Reading package lists... 112s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s Calculating upgrade... 115s The following packages will be REMOVED: 115s libmagic1 libssl3 115s The following NEW packages will be installed: 115s libmagic1t64 libssl3t64 115s The following packages have been kept back: 115s curl 115s The following packages will be upgraded: 115s file libmagic-mgc openssl 115s 3 upgraded, 2 newly installed, 2 to remove and 1 not upgraded. 115s Need to get 3192 kB of archives. 115s After this operation, 145 kB of additional disk space will be used. 115s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 116s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 116s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 116s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 116s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 117s Fetched 3192 kB in 1s (2946 kB/s) 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 117s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 117s Unpacking file (1:5.45-3) over (1:5.45-2) ... 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 118s Removing libmagic1:arm64 (1:5.45-2) ... 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 118s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 118s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 118s Selecting previously unselected package libmagic1t64:arm64. 118s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 118s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 118s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 118s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 118s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 118s wget depends on libssl3 (>= 3.0.0). 118s u-boot-tools depends on libssl3 (>= 3.0.0). 118s tnftp depends on libssl3 (>= 3.0.0). 118s tcpdump depends on libssl3 (>= 3.0.0). 118s systemd-resolved depends on libssl3 (>= 3.0.0). 118s systemd depends on libssl3 (>= 3.0.0). 118s sudo depends on libssl3 (>= 3.0.0). 118s sbsigntool depends on libssl3 (>= 3.0.0). 118s rsync depends on libssl3 (>= 3.0.0). 118s python3-cryptography depends on libssl3 (>= 3.0.0). 118s openssh-server depends on libssl3 (>= 3.0.10). 118s openssh-client depends on libssl3 (>= 3.0.10). 118s mtd-utils depends on libssl3 (>= 3.0.0). 118s mokutil depends on libssl3 (>= 3.0.0). 118s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 118s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 118s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 118s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 118s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 118s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 118s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 118s libnvme1 depends on libssl3 (>= 3.0.0). 118s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 118s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 118s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 118s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 118s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 118s kmod depends on libssl3 (>= 3.0.0). 118s dhcpcd-base depends on libssl3 (>= 3.0.0). 118s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 118s 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 119s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 119s Selecting previously unselected package libssl3t64:arm64. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 119s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 119s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 119s Setting up libmagic-mgc (1:5.45-3) ... 119s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 119s Setting up libmagic1t64:arm64 (1:5.45-3) ... 119s Setting up file (1:5.45-3) ... 119s Setting up openssl (3.0.13-0ubuntu2) ... 119s Processing triggers for man-db (2.12.0-3) ... 120s Processing triggers for libc-bin (2.39-0ubuntu6) ... 120s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 123s sh: Attempting to set up Debian/Ubuntu apt sources automatically 124s sh: Distribution appears to be Ubuntu 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s eatmydata is already the newest version (131-1). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s dbus is already the newest version (1.14.10-4ubuntu1). 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 131s rng-tools-debian is already the newest version (2.4). 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 133s The following packages will be REMOVED: 133s cloud-init* python3-configobj* python3-debconf* 133s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 133s After this operation, 3256 kB disk space will be freed. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 134s Removing cloud-init (24.1.2-0ubuntu1) ... 135s Removing python3-configobj (5.0.8-3) ... 135s Removing python3-debconf (1.5.86) ... 135s Processing triggers for man-db (2.12.0-3) ... 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75525 files and directories currently installed.) 136s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 138s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 138s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 138s invoke-rc.d: policy-rc.d denied execution of try-restart. 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 141s linux-generic is already the newest version (6.8.0-11.11+1). 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 141s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 142s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 145s Fetched 255 kB in 1s (190 kB/s) 147s Reading package lists... 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s Calculating upgrade... 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s Reading package lists... 150s Building dependency tree... 150s Reading state information... 151s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s autopkgtest [18:24:48]: rebooting testbed after setup commands that affected boot 308s autopkgtest [18:27:24]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 311s autopkgtest [18:27:27]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk 322s Get:1 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (dsc) [2649 B] 322s Get:2 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (tar) [46.9 MB] 322s Get:3 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (diff) [39.4 kB] 322s gpgv: Signature made Sun Feb 11 21:45:33 2024 UTC 322s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 322s gpgv: Can't check signature: No public key 322s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-1.dsc: no acceptable signature found 325s autopkgtest [18:27:41]: testing package htsjdk version 4.1.0+dfsg-1 326s autopkgtest [18:27:42]: build not needed 331s autopkgtest [18:27:47]: test beagle-run-sample-analysis: preparing testbed 342s Reading package lists... 343s Building dependency tree... 343s Reading state information... 343s Starting pkgProblemResolver with broken count: 0 344s Starting 2 pkgProblemResolver with broken count: 0 344s Done 345s The following additional packages will be installed: 345s adwaita-icon-theme at-spi2-common beagle beagle-doc ca-certificates-java 345s default-jre default-jre-headless fontconfig fontconfig-config 345s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 345s humanity-icon-theme java-common libapache-pom-java libasound2 345s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 345s libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java 345s libcommons-logging-java libcommons-parent-java libcups2 libdatrie1 345s libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 345s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 345s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 345s libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 libjpeg-turbo8 345s libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 libmbedtls14 345s libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni 345s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 345s libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java libsnappy-jni 345s libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1 345s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 345s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 345s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 345s libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre 345s openjdk-21-jre-headless ubuntu-mono x11-common 345s Suggested packages: 345s libasound2-plugins alsa-utils libasm-java libxz-java 345s libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java 345s cups-common gvfs picard-tools liblcms2-utils libngs-java-doc pcscd rhino 345s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 345s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 345s Recommended packages: 345s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 345s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 345s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 345s The following NEW packages will be installed: 345s adwaita-icon-theme at-spi2-common autopkgtest-satdep beagle beagle-doc 345s ca-certificates-java default-jre default-jre-headless fontconfig 345s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 345s hicolor-icon-theme humanity-icon-theme java-common libapache-pom-java 345s libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 345s libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java 345s libcommons-logging-java libcommons-parent-java libcups2 libdatrie1 345s libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 345s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 345s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 345s libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 libjpeg-turbo8 345s libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 libmbedtls14 345s libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni 345s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 345s libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java libsnappy-jni 345s libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1 345s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 345s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 345s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 345s libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre 345s openjdk-21-jre-headless ubuntu-mono x11-common 345s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. 345s Need to get 98.1 MB/98.1 MB of archives. 345s After this operation, 447 MB of additional disk space will be used. 345s Get:1 /tmp/autopkgtest.opYCPy/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 345s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 345s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 345s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 345s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 345s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 345s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 345s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 345s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 345s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 345s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 345s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 345s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 345s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 346s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 346s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 346s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 346s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 346s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 346s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 346s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 346s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 346s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 346s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 346s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 346s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 346s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 346s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 346s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 346s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 346s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 346s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 346s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 346s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 348s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 348s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 349s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 349s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 349s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 349s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 349s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 349s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 349s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 349s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 349s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 349s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 349s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 349s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 349s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 349s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 349s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 349s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 349s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 349s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 349s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 349s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 349s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 349s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 349s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 349s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 349s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 349s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 349s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 349s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 349s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 349s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 349s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 349s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 349s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 349s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 349s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 349s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 349s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 349s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 350s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 350s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 350s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 350s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 350s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 350s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 350s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 350s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 350s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 350s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 350s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 350s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 350s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 350s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 350s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 350s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 350s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 350s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 350s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 350s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 350s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 350s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 350s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 350s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 350s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 350s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 350s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 350s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 350s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 beagle all 220722-1 [356 kB] 351s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 beagle-doc all 220722-1 [1655 kB] 352s Fetched 98.1 MB in 6s (16.7 MB/s) 352s Selecting previously unselected package libgdk-pixbuf2.0-common. 352s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75470 files and directories currently installed.) 352s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 352s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 352s Selecting previously unselected package libjpeg-turbo8:arm64. 352s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 352s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 352s Selecting previously unselected package libjpeg8:arm64. 352s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 352s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 352s Selecting previously unselected package libdeflate0:arm64. 352s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 352s Unpacking libdeflate0:arm64 (1.19-1) ... 352s Selecting previously unselected package libjbig0:arm64. 352s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 352s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 352s Selecting previously unselected package liblerc4:arm64. 352s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 352s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 352s Selecting previously unselected package libsharpyuv0:arm64. 352s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 352s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 352s Selecting previously unselected package libwebp7:arm64. 352s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 352s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 353s Selecting previously unselected package libtiff6:arm64. 353s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 353s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 353s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 353s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 353s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 353s Selecting previously unselected package gtk-update-icon-cache. 353s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 353s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 353s Selecting previously unselected package hicolor-icon-theme. 353s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 353s Unpacking hicolor-icon-theme (0.17-2) ... 353s Selecting previously unselected package humanity-icon-theme. 353s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 353s Unpacking humanity-icon-theme (0.6.16) ... 355s Selecting previously unselected package ubuntu-mono. 355s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 355s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 357s Selecting previously unselected package adwaita-icon-theme. 357s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 357s Unpacking adwaita-icon-theme (46~rc-1) ... 357s Selecting previously unselected package at-spi2-common. 357s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 357s Unpacking at-spi2-common (2.50.0-1) ... 357s Selecting previously unselected package ca-certificates-java. 357s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 357s Unpacking ca-certificates-java (20240118) ... 357s Selecting previously unselected package java-common. 357s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 357s Unpacking java-common (0.75+exp1) ... 357s Selecting previously unselected package libavahi-common-data:arm64. 357s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 357s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 357s Selecting previously unselected package libavahi-common3:arm64. 357s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 357s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 357s Selecting previously unselected package libavahi-client3:arm64. 357s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 357s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 357s Selecting previously unselected package libcups2:arm64. 357s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 357s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 358s Selecting previously unselected package liblcms2-2:arm64. 358s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 358s Unpacking liblcms2-2:arm64 (2.14-2) ... 358s Selecting previously unselected package fonts-dejavu-mono. 358s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 358s Unpacking fonts-dejavu-mono (2.37-8) ... 358s Selecting previously unselected package fonts-dejavu-core. 358s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 358s Unpacking fonts-dejavu-core (2.37-8) ... 358s Selecting previously unselected package fontconfig-config. 358s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 358s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 358s Selecting previously unselected package libfontconfig1:arm64. 358s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 358s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 358s Selecting previously unselected package libasound2-data. 358s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 358s Unpacking libasound2-data (1.2.10-3build1) ... 358s Selecting previously unselected package libasound2:arm64. 359s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 359s Unpacking libasound2:arm64 (1.2.10-3build1) ... 359s Selecting previously unselected package libgraphite2-3:arm64. 359s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 359s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 359s Selecting previously unselected package libharfbuzz0b:arm64. 359s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 359s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 359s Selecting previously unselected package libpcsclite1:arm64. 359s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 359s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 359s Selecting previously unselected package openjdk-21-jre-headless:arm64. 359s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 359s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 362s Selecting previously unselected package default-jre-headless. 362s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 362s Unpacking default-jre-headless (2:1.21-75+exp1) ... 362s Selecting previously unselected package libgtk2.0-common. 362s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 362s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 362s Selecting previously unselected package libatk1.0-0:arm64. 362s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 362s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 362s Selecting previously unselected package libpixman-1-0:arm64. 362s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 362s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 362s Selecting previously unselected package libxcb-render0:arm64. 362s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 362s Unpacking libxcb-render0:arm64 (1.15-1) ... 362s Selecting previously unselected package libxcb-shm0:arm64. 362s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 362s Unpacking libxcb-shm0:arm64 (1.15-1) ... 362s Selecting previously unselected package libxrender1:arm64. 363s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 363s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 363s Selecting previously unselected package libcairo2:arm64. 363s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 363s Unpacking libcairo2:arm64 (1.18.0-1) ... 363s Selecting previously unselected package fontconfig. 363s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 363s Unpacking fontconfig (2.15.0-1ubuntu1) ... 363s Selecting previously unselected package libthai-data. 363s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 363s Unpacking libthai-data (0.1.29-2) ... 363s Selecting previously unselected package libdatrie1:arm64. 363s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 363s Unpacking libdatrie1:arm64 (0.2.13-3) ... 363s Selecting previously unselected package libthai0:arm64. 363s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 363s Unpacking libthai0:arm64 (0.1.29-2) ... 363s Selecting previously unselected package libpango-1.0-0:arm64. 363s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 363s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 363s Selecting previously unselected package libpangoft2-1.0-0:arm64. 363s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 363s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 363s Selecting previously unselected package libpangocairo-1.0-0:arm64. 363s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 363s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 363s Selecting previously unselected package libxcomposite1:arm64. 363s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 363s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 363s Selecting previously unselected package libxfixes3:arm64. 363s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 363s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 363s Selecting previously unselected package libxcursor1:arm64. 363s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 363s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 363s Selecting previously unselected package libxdamage1:arm64. 363s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 363s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 363s Selecting previously unselected package libxi6:arm64. 364s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 364s Unpacking libxi6:arm64 (2:1.8.1-1) ... 364s Selecting previously unselected package libxinerama1:arm64. 364s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 364s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 364s Selecting previously unselected package libxrandr2:arm64. 364s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 364s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 364s Selecting previously unselected package libgtk2.0-0:arm64. 364s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 364s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 364s Selecting previously unselected package libglvnd0:arm64. 364s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 364s Unpacking libglvnd0:arm64 (1.7.0-1) ... 364s Selecting previously unselected package libglapi-mesa:arm64. 364s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 364s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 364s Selecting previously unselected package libx11-xcb1:arm64. 364s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 364s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 364s Selecting previously unselected package libxcb-dri2-0:arm64. 364s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 364s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 364s Selecting previously unselected package libxcb-dri3-0:arm64. 364s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 364s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 364s Selecting previously unselected package libxcb-glx0:arm64. 364s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 364s Unpacking libxcb-glx0:arm64 (1.15-1) ... 364s Selecting previously unselected package libxcb-present0:arm64. 364s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 364s Unpacking libxcb-present0:arm64 (1.15-1) ... 364s Selecting previously unselected package libxcb-randr0:arm64. 364s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 364s Unpacking libxcb-randr0:arm64 (1.15-1) ... 364s Selecting previously unselected package libxcb-sync1:arm64. 365s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 365s Unpacking libxcb-sync1:arm64 (1.15-1) ... 365s Selecting previously unselected package libxcb-xfixes0:arm64. 365s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 365s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 365s Selecting previously unselected package libxshmfence1:arm64. 365s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 365s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 365s Selecting previously unselected package libxxf86vm1:arm64. 365s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 365s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 365s Selecting previously unselected package libvulkan1:arm64. 365s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 365s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 365s Selecting previously unselected package libdrm-amdgpu1:arm64. 365s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 365s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 365s Selecting previously unselected package libdrm-nouveau2:arm64. 365s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 365s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 365s Selecting previously unselected package libdrm-radeon1:arm64. 365s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 365s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 365s Selecting previously unselected package libllvm17:arm64. 365s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 365s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 367s Selecting previously unselected package libgl1-mesa-dri:arm64. 367s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 367s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 367s Selecting previously unselected package libglx-mesa0:arm64. 367s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 367s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 367s Selecting previously unselected package libglx0:arm64. 367s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 367s Unpacking libglx0:arm64 (1.7.0-1) ... 368s Selecting previously unselected package libgl1:arm64. 368s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 368s Unpacking libgl1:arm64 (1.7.0-1) ... 368s Selecting previously unselected package libgif7:arm64. 368s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 368s Unpacking libgif7:arm64 (5.2.1-2.5) ... 368s Selecting previously unselected package x11-common. 368s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 368s Unpacking x11-common (1:7.7+23ubuntu2) ... 368s Selecting previously unselected package libxtst6:arm64. 368s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 368s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 368s Selecting previously unselected package openjdk-21-jre:arm64. 368s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 368s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 368s Selecting previously unselected package default-jre. 368s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 368s Unpacking default-jre (2:1.21-75+exp1) ... 368s Selecting previously unselected package libapache-pom-java. 368s Preparing to unpack .../082-libapache-pom-java_29-2_all.deb ... 368s Unpacking libapache-pom-java (29-2) ... 368s Selecting previously unselected package libcommons-parent-java. 368s Preparing to unpack .../083-libcommons-parent-java_56-1_all.deb ... 368s Unpacking libcommons-parent-java (56-1) ... 368s Selecting previously unselected package libcommons-compress-java. 368s Preparing to unpack .../084-libcommons-compress-java_1.25.0-1_all.deb ... 368s Unpacking libcommons-compress-java (1.25.0-1) ... 368s Selecting previously unselected package libcommons-logging-java. 368s Preparing to unpack .../085-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 368s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 368s Selecting previously unselected package libcommons-jexl2-java. 368s Preparing to unpack .../086-libcommons-jexl2-java_2.1.1-6_all.deb ... 368s Unpacking libcommons-jexl2-java (2.1.1-6) ... 368s Selecting previously unselected package libmjson-java. 368s Preparing to unpack .../087-libmjson-java_1.4.0-3_all.deb ... 368s Unpacking libmjson-java (1.4.0-3) ... 368s Selecting previously unselected package libmbedcrypto7:arm64. 368s Preparing to unpack .../088-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 368s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 369s Selecting previously unselected package libmbedx509-1:arm64. 369s Preparing to unpack .../089-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 369s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 369s Selecting previously unselected package libmbedtls14:arm64. 369s Preparing to unpack .../090-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 369s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 369s Selecting previously unselected package ncbi-vdb-data. 369s Preparing to unpack .../091-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 369s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 369s Selecting previously unselected package libncbi-vdb3:arm64. 369s Preparing to unpack .../092-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 369s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 369s Selecting previously unselected package libncbi-ngs3:arm64. 369s Preparing to unpack .../093-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 369s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 369s Selecting previously unselected package libngs-jni:arm64. 369s Preparing to unpack .../094-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 369s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 369s Selecting previously unselected package libngs-java:arm64. 369s Preparing to unpack .../095-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 369s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 369s Selecting previously unselected package librhino-java. 369s Preparing to unpack .../096-librhino-java_1.7.14-2.1_all.deb ... 369s Unpacking librhino-java (1.7.14-2.1) ... 369s Selecting previously unselected package libsnappy1v5:arm64. 369s Preparing to unpack .../097-libsnappy1v5_1.1.10-1_arm64.deb ... 369s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 369s Selecting previously unselected package libsnappy-jni. 369s Preparing to unpack .../098-libsnappy-jni_1.1.10.5-1_arm64.deb ... 369s Unpacking libsnappy-jni (1.1.10.5-1) ... 369s Selecting previously unselected package libsnappy-java. 369s Preparing to unpack .../099-libsnappy-java_1.1.10.5-1_all.deb ... 369s Unpacking libsnappy-java (1.1.10.5-1) ... 369s Selecting previously unselected package libhtsjdk-java. 369s Preparing to unpack .../100-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 369s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 370s Selecting previously unselected package beagle. 370s Preparing to unpack .../101-beagle_220722-1_all.deb ... 370s Unpacking beagle (220722-1) ... 370s Selecting previously unselected package beagle-doc. 370s Preparing to unpack .../102-beagle-doc_220722-1_all.deb ... 370s Unpacking beagle-doc (220722-1) ... 370s Selecting previously unselected package autopkgtest-satdep. 370s Preparing to unpack .../103-1-autopkgtest-satdep.deb ... 370s Unpacking autopkgtest-satdep (0) ... 370s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 370s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 370s Setting up liblcms2-2:arm64 (2.14-2) ... 370s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 370s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 370s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 370s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 370s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 370s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 370s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 370s Setting up hicolor-icon-theme (0.17-2) ... 370s Setting up libxi6:arm64 (2:1.8.1-1) ... 370s Setting up java-common (0.75+exp1) ... 370s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 370s Setting up libdatrie1:arm64 (0.2.13-3) ... 370s Setting up beagle-doc (220722-1) ... 370s Setting up libxcb-render0:arm64 (1.15-1) ... 370s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 370s Setting up libglvnd0:arm64 (1.7.0-1) ... 370s Setting up libmjson-java (1.4.0-3) ... 370s Setting up libxcb-glx0:arm64 (1.15-1) ... 370s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 370s Setting up x11-common (1:7.7+23ubuntu2) ... 371s Setting up libdeflate0:arm64 (1.19-1) ... 371s Setting up libxcb-shm0:arm64 (1.15-1) ... 371s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 371s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 371s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 371s Setting up libxcb-present0:arm64 (1.15-1) ... 371s Setting up libasound2-data (1.2.10-3build1) ... 371s Setting up librhino-java (1.7.14-2.1) ... 371s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 371s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 371s Setting up libxcb-sync1:arm64 (1.15-1) ... 371s Setting up libapache-pom-java (29-2) ... 371s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 371s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 371s Setting up fonts-dejavu-mono (2.37-8) ... 371s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 371s Setting up fonts-dejavu-core (2.37-8) ... 371s Setting up libpcsclite1:arm64 (2.0.0-1) ... 371s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 371s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 371s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 371s Setting up libwebp7:arm64 (1.3.2-0.4) ... 371s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 371s Setting up libgif7:arm64 (5.2.1-2.5) ... 371s Setting up libxshmfence1:arm64 (1.3-1build4) ... 371s Setting up at-spi2-common (2.50.0-1) ... 371s Setting up libxcb-randr0:arm64 (1.15-1) ... 371s Setting up libasound2:arm64 (1.2.10-3build1) ... 371s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 371s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 371s Setting up libthai-data (0.1.29-2) ... 371s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 371s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 371s Setting up ca-certificates-java (20240118) ... 371s No JRE found. Skipping Java certificates setup. 371s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 371s Setting up libsnappy-jni (1.1.10.5-1) ... 371s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 371s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 371s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 371s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 371s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 371s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 372s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 372s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 372s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 372s Setting up libcommons-parent-java (56-1) ... 372s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 372s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 372s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 372s Setting up libcommons-jexl2-java (2.1.1-6) ... 372s Setting up libthai0:arm64 (0.1.29-2) ... 372s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 372s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 372s Setting up libsnappy-java (1.1.10.5-1) ... 372s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 372s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 372s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 372s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 372s Setting up fontconfig (2.15.0-1ubuntu1) ... 374s Regenerating fonts cache... done. 374s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 374s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 374s Setting up libglx0:arm64 (1.7.0-1) ... 374s Setting up libcommons-compress-java (1.25.0-1) ... 374s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 374s Setting up libcairo2:arm64 (1.18.0-1) ... 374s Setting up libgl1:arm64 (1.7.0-1) ... 374s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 374s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 374s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 374s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 374s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 374s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 374s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 374s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 374s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 374s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 374s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 374s Setting up adwaita-icon-theme (46~rc-1) ... 374s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 374s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 374s Setting up humanity-icon-theme (0.6.16) ... 375s Setting up ubuntu-mono (24.04-0ubuntu1) ... 375s Processing triggers for man-db (2.12.0-3) ... 376s Processing triggers for libc-bin (2.39-0ubuntu6) ... 376s Processing triggers for ca-certificates-java (20240118) ... 377s Adding debian:ACCVRAIZ1.pem 377s Adding debian:AC_RAIZ_FNMT-RCM.pem 377s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 377s Adding debian:ANF_Secure_Server_Root_CA.pem 377s Adding debian:Actalis_Authentication_Root_CA.pem 377s Adding debian:AffirmTrust_Commercial.pem 377s Adding debian:AffirmTrust_Networking.pem 377s Adding debian:AffirmTrust_Premium.pem 377s Adding debian:AffirmTrust_Premium_ECC.pem 377s Adding debian:Amazon_Root_CA_1.pem 377s Adding debian:Amazon_Root_CA_2.pem 377s Adding debian:Amazon_Root_CA_3.pem 377s Adding debian:Amazon_Root_CA_4.pem 377s Adding debian:Atos_TrustedRoot_2011.pem 377s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 377s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 377s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 377s Adding debian:BJCA_Global_Root_CA1.pem 377s Adding debian:BJCA_Global_Root_CA2.pem 377s Adding debian:Baltimore_CyberTrust_Root.pem 377s Adding debian:Buypass_Class_2_Root_CA.pem 377s Adding debian:Buypass_Class_3_Root_CA.pem 377s Adding debian:CA_Disig_Root_R2.pem 377s Adding debian:CFCA_EV_ROOT.pem 377s Adding debian:COMODO_Certification_Authority.pem 377s Adding debian:COMODO_ECC_Certification_Authority.pem 377s Adding debian:COMODO_RSA_Certification_Authority.pem 377s Adding debian:Certainly_Root_E1.pem 377s Adding debian:Certainly_Root_R1.pem 377s Adding debian:Certigna.pem 377s Adding debian:Certigna_Root_CA.pem 377s Adding debian:Certum_EC-384_CA.pem 377s Adding debian:Certum_Trusted_Network_CA.pem 377s Adding debian:Certum_Trusted_Network_CA_2.pem 377s Adding debian:Certum_Trusted_Root_CA.pem 377s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 377s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 377s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 377s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 377s Adding debian:Comodo_AAA_Services_root.pem 377s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 377s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 377s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 377s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 377s Adding debian:DigiCert_Assured_ID_Root_CA.pem 377s Adding debian:DigiCert_Assured_ID_Root_G2.pem 377s Adding debian:DigiCert_Assured_ID_Root_G3.pem 377s Adding debian:DigiCert_Global_Root_CA.pem 377s Adding debian:DigiCert_Global_Root_G2.pem 377s Adding debian:DigiCert_Global_Root_G3.pem 377s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 377s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 377s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 377s Adding debian:DigiCert_Trusted_Root_G4.pem 377s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 377s Adding debian:Entrust_Root_Certification_Authority.pem 377s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 377s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 377s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 378s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 378s Adding debian:GLOBALTRUST_2020.pem 378s Adding debian:GTS_Root_R1.pem 378s Adding debian:GTS_Root_R2.pem 378s Adding debian:GTS_Root_R3.pem 378s Adding debian:GTS_Root_R4.pem 378s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 378s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 378s Adding debian:GlobalSign_Root_CA.pem 378s Adding debian:GlobalSign_Root_CA_-_R3.pem 378s Adding debian:GlobalSign_Root_CA_-_R6.pem 378s Adding debian:GlobalSign_Root_E46.pem 378s Adding debian:GlobalSign_Root_R46.pem 378s Adding debian:Go_Daddy_Class_2_CA.pem 378s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 378s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 378s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 378s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 378s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 378s Adding debian:HiPKI_Root_CA_-_G1.pem 378s Adding debian:Hongkong_Post_Root_CA_3.pem 378s Adding debian:ISRG_Root_X1.pem 378s Adding debian:ISRG_Root_X2.pem 378s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 378s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 378s Adding debian:Izenpe.com.pem 378s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 378s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 378s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 378s Adding debian:NAVER_Global_Root_Certification_Authority.pem 378s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 378s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 378s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 378s Adding debian:QuoVadis_Root_CA_1_G3.pem 378s Adding debian:QuoVadis_Root_CA_2.pem 378s Adding debian:QuoVadis_Root_CA_2_G3.pem 378s Adding debian:QuoVadis_Root_CA_3.pem 378s Adding debian:QuoVadis_Root_CA_3_G3.pem 378s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 378s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 378s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 378s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 378s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 378s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 378s Adding debian:SZAFIR_ROOT_CA2.pem 378s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 378s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 378s Adding debian:SecureSign_RootCA11.pem 378s Adding debian:SecureTrust_CA.pem 378s Adding debian:Secure_Global_CA.pem 378s Adding debian:Security_Communication_ECC_RootCA1.pem 378s Adding debian:Security_Communication_RootCA2.pem 378s Adding debian:Security_Communication_RootCA3.pem 378s Adding debian:Security_Communication_Root_CA.pem 378s Adding debian:Starfield_Class_2_CA.pem 378s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 378s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 378s Adding debian:SwissSign_Gold_CA_-_G2.pem 378s Adding debian:SwissSign_Silver_CA_-_G2.pem 378s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 378s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 378s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 378s Adding debian:TWCA_Global_Root_CA.pem 378s Adding debian:TWCA_Root_Certification_Authority.pem 378s Adding debian:TeliaSonera_Root_CA_v1.pem 378s Adding debian:Telia_Root_CA_v2.pem 378s Adding debian:TrustAsia_Global_Root_CA_G3.pem 378s Adding debian:TrustAsia_Global_Root_CA_G4.pem 378s Adding debian:Trustwave_Global_Certification_Authority.pem 378s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 378s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 378s Adding debian:TunTrust_Root_CA.pem 378s Adding debian:UCA_Extended_Validation_Root.pem 378s Adding debian:UCA_Global_G2_Root.pem 378s Adding debian:USERTrust_ECC_Certification_Authority.pem 378s Adding debian:USERTrust_RSA_Certification_Authority.pem 378s Adding debian:XRamp_Global_CA_Root.pem 378s Adding debian:certSIGN_ROOT_CA.pem 378s Adding debian:certSIGN_Root_CA_G2.pem 378s Adding debian:e-Szigno_Root_CA_2017.pem 378s Adding debian:ePKI_Root_Certification_Authority.pem 378s Adding debian:emSign_ECC_Root_CA_-_C3.pem 378s Adding debian:emSign_ECC_Root_CA_-_G3.pem 378s Adding debian:emSign_Root_CA_-_C1.pem 378s Adding debian:emSign_Root_CA_-_G1.pem 378s Adding debian:vTrus_ECC_Root_CA.pem 378s Adding debian:vTrus_Root_CA.pem 379s done. 379s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 379s Setting up default-jre-headless (2:1.21-75+exp1) ... 379s Setting up default-jre (2:1.21-75+exp1) ... 379s Setting up beagle (220722-1) ... 379s Setting up autopkgtest-satdep (0) ... 388s (Reading database ... 89681 files and directories currently installed.) 388s Removing autopkgtest-satdep (0) ... 389s autopkgtest [18:28:45]: test beagle-run-sample-analysis: [----------------------- 391s beagle.22Jul22.46e.jar (version 5.4) 391s Copyright (C) 2014-2022 Brian L. Browning 391s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument 392s Start time: 06:28 PM UTC on 24 Mar 2024 392s 392s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar 392s gt=test.vcf.gz 392s out=out.gt 392s nthreads=1 392s 392s No genetic map is specified: using 1 cM = 1 Mb 393s 393s Reference samples: 0 393s Study samples: 191 393s 393s Window 1 [22:20000086-20099941] 393s Study markers: 1,356 396s 396s Burnin iteration 1: 2 seconds 397s Burnin iteration 2: 1 second 398s 398s Estimated ne: 136281 398s Estimated err: 1.4e-03 398s 398s Phasing iteration 1: 1 second 398s Phasing iteration 2: 0 seconds 398s Phasing iteration 3: 0 seconds 399s Phasing iteration 4: 0 seconds 399s Phasing iteration 5: 0 seconds 399s Phasing iteration 6: 0 seconds 399s Phasing iteration 7: 0 seconds 399s Phasing iteration 8: 0 seconds 399s Phasing iteration 9: 0 seconds 400s Phasing iteration 10: 0 seconds 400s Phasing iteration 11: 0 seconds 400s Phasing iteration 12: 0 seconds 401s Low frequency phasing: 1 second 401s 401s Cumulative Statistics: 401s 401s Study markers: 1,356 401s 401s Haplotype phasing time: 7 seconds 401s Total time: 10 seconds 401s 401s End time: 06:28 PM UTC on 24 Mar 2024 401s beagle.22Jul22.46e.jar finished 401s beagle.22Jul22.46e.jar (version 5.4) 401s Copyright (C) 2014-2022 Brian L. Browning 401s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument 402s Start time: 06:28 PM UTC on 24 Mar 2024 402s 402s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar 402s ref=ref.vcf.gz 402s gt=target.vcf.gz 402s out=out.ref 402s nthreads=1 402s 402s No genetic map is specified: using 1 cM = 1 Mb 403s 403s Reference samples: 181 403s Study samples: 10 403s 403s Window 1 [22:20000086-20099941] 403s Reference markers: 1,356 403s Study markers: 1,356 404s 404s Burnin iteration 1: 1 second 404s Burnin iteration 2: 0 seconds 404s 404s Estimated ne: 217008 404s Estimated err: 1.4e-03 404s 404s Phasing iteration 1: 0 seconds 404s Phasing iteration 2: 0 seconds 404s Phasing iteration 3: 0 seconds 404s Phasing iteration 4: 0 seconds 404s Phasing iteration 5: 0 seconds 405s Phasing iteration 6: 0 seconds 405s Phasing iteration 7: 0 seconds 405s Phasing iteration 8: 0 seconds 405s Phasing iteration 9: 0 seconds 405s Phasing iteration 10: 0 seconds 405s Phasing iteration 11: 0 seconds 405s Phasing iteration 12: 0 seconds 405s Low frequency phasing: 0 seconds 405s 405s Cumulative Statistics: 405s 405s Study markers: 1,356 405s 405s Haplotype phasing time: 2 seconds 405s Total time: 4 seconds 405s 405s End time: 06:29 PM UTC on 24 Mar 2024 405s beagle.22Jul22.46e.jar finished 406s beagle.22Jul22.46e.jar (version 5.4) 406s Copyright (C) 2014-2022 Brian L. Browning 406s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument 406s Start time: 06:29 PM UTC on 24 Mar 2024 406s 406s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar 406s ref=ref.bref3 406s gt=target.vcf.gz 406s out=out.bref3 406s nthreads=1 406s 406s No genetic map is specified: using 1 cM = 1 Mb 407s 407s Reference samples: 181 407s Study samples: 10 407s 407s Window 1 [22:20000086-20099941] 407s Reference markers: 1,356 407s Study markers: 1,356 408s 408s Burnin iteration 1: 1 second 409s Burnin iteration 2: 0 seconds 409s 409s Estimated ne: 217008 409s Estimated err: 1.4e-03 409s 409s Phasing iteration 1: 0 seconds 409s Phasing iteration 2: 0 seconds 409s Phasing iteration 3: 0 seconds 409s Phasing iteration 4: 0 seconds 409s Phasing iteration 5: 0 seconds 409s Phasing iteration 6: 0 seconds 409s Phasing iteration 7: 0 seconds 409s Phasing iteration 8: 0 seconds 409s Phasing iteration 9: 0 seconds 409s Phasing iteration 10: 0 seconds 409s Phasing iteration 11: 0 seconds 409s Phasing iteration 12: 0 seconds 409s Low frequency phasing: 0 seconds 410s 410s Cumulative Statistics: 410s 410s Study markers: 1,356 410s 410s Haplotype phasing time: 2 seconds 410s Total time: 4 seconds 410s 410s End time: 06:29 PM UTC on 24 Mar 2024 410s beagle.22Jul22.46e.jar finished 410s autopkgtest [18:29:06]: test beagle-run-sample-analysis: -----------------------] 411s autopkgtest [18:29:07]: test beagle-run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 411s beagle-run-sample-analysis PASS 411s autopkgtest [18:29:07]: test chromhmm-run-sample-analysis: preparing testbed 514s autopkgtest [18:30:50]: testbed dpkg architecture: arm64 514s autopkgtest [18:30:50]: testbed apt version: 2.7.12 514s autopkgtest [18:30:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 515s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 516s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 516s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 516s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 516s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 516s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 516s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 516s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 516s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 516s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 517s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 517s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 517s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 522s Fetched 9848 kB in 3s (3288 kB/s) 523s Reading package lists... 527s Reading package lists... 528s Building dependency tree... 528s Reading state information... 529s Calculating upgrade... 530s The following packages will be REMOVED: 530s libmagic1 libssl3 530s The following NEW packages will be installed: 530s libmagic1t64 libssl3t64 530s The following packages have been kept back: 530s curl 530s The following packages will be upgraded: 530s file libmagic-mgc openssl 530s 3 upgraded, 2 newly installed, 2 to remove and 1 not upgraded. 530s Need to get 3192 kB of archives. 530s After this operation, 145 kB of additional disk space will be used. 530s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 530s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 530s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 530s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 530s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 531s Fetched 3192 kB in 1s (4158 kB/s) 532s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 532s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 532s Unpacking file (1:5.45-3) over (1:5.45-2) ... 532s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 532s Removing libmagic1:arm64 (1:5.45-2) ... 532s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 532s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 532s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 532s Selecting previously unselected package libmagic1t64:arm64. 532s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 532s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 532s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 532s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 533s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 533s wget depends on libssl3 (>= 3.0.0). 533s u-boot-tools depends on libssl3 (>= 3.0.0). 533s tnftp depends on libssl3 (>= 3.0.0). 533s tcpdump depends on libssl3 (>= 3.0.0). 533s systemd-resolved depends on libssl3 (>= 3.0.0). 533s systemd depends on libssl3 (>= 3.0.0). 533s sudo depends on libssl3 (>= 3.0.0). 533s sbsigntool depends on libssl3 (>= 3.0.0). 533s rsync depends on libssl3 (>= 3.0.0). 533s python3-cryptography depends on libssl3 (>= 3.0.0). 533s openssh-server depends on libssl3 (>= 3.0.10). 533s openssh-client depends on libssl3 (>= 3.0.10). 533s mtd-utils depends on libssl3 (>= 3.0.0). 533s mokutil depends on libssl3 (>= 3.0.0). 533s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 533s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 533s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 533s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 533s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 533s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 533s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 533s libnvme1 depends on libssl3 (>= 3.0.0). 533s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 533s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 533s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 533s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 533s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 533s kmod depends on libssl3 (>= 3.0.0). 533s dhcpcd-base depends on libssl3 (>= 3.0.0). 533s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 533s 533s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 533s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 533s Selecting previously unselected package libssl3t64:arm64. 533s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 533s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 533s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 533s Setting up libmagic-mgc (1:5.45-3) ... 533s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 533s Setting up libmagic1t64:arm64 (1:5.45-3) ... 533s Setting up file (1:5.45-3) ... 533s Setting up openssl (3.0.13-0ubuntu2) ... 533s Processing triggers for man-db (2.12.0-3) ... 534s Processing triggers for libc-bin (2.39-0ubuntu6) ... 535s Reading package lists... 535s Building dependency tree... 535s Reading state information... 536s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 538s sh: Attempting to set up Debian/Ubuntu apt sources automatically 538s sh: Distribution appears to be Ubuntu 539s Reading package lists... 540s Building dependency tree... 540s Reading state information... 541s eatmydata is already the newest version (131-1). 541s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 541s Reading package lists... 542s Building dependency tree... 542s Reading state information... 543s dbus is already the newest version (1.14.10-4ubuntu1). 543s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 543s Reading package lists... 543s Building dependency tree... 543s Reading state information... 545s rng-tools-debian is already the newest version (2.4). 545s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 545s Reading package lists... 545s Building dependency tree... 545s Reading state information... 546s The following packages will be REMOVED: 546s cloud-init* python3-configobj* python3-debconf* 547s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 547s After this operation, 3256 kB disk space will be freed. 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 547s Removing cloud-init (24.1.2-0ubuntu1) ... 548s Removing python3-configobj (5.0.8-3) ... 549s Removing python3-debconf (1.5.86) ... 549s Processing triggers for man-db (2.12.0-3) ... 549s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75525 files and directories currently installed.) 549s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 551s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 551s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 551s invoke-rc.d: policy-rc.d denied execution of try-restart. 552s Reading package lists... 552s Building dependency tree... 552s Reading state information... 553s linux-generic is already the newest version (6.8.0-11.11+1). 553s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 554s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 554s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 554s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 559s Reading package lists... 559s Reading package lists... 560s Building dependency tree... 560s Reading state information... 561s Calculating upgrade... 562s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 562s Reading package lists... 562s Building dependency tree... 562s Reading state information... 564s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 564s autopkgtest [18:31:40]: rebooting testbed after setup commands that affected boot 729s Reading package lists... 729s Building dependency tree... 729s Reading state information... 730s Starting pkgProblemResolver with broken count: 0 730s Starting 2 pkgProblemResolver with broken count: 0 730s Done 731s The following additional packages will be installed: 731s adwaita-icon-theme at-spi2-common ca-certificates-java chromhmm 731s chromhmm-example default-jre default-jre-headless fontconfig 731s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 731s hicolor-icon-theme humanity-icon-theme java-common java-wrappers 731s libapache-pom-java libasound2 libasound2-data libatk1.0-0 libavahi-client3 731s libavahi-common-data libavahi-common3 libbatik-java libcairo2 731s libcommons-compress-java libcommons-io-java libcommons-jexl2-java 731s libcommons-logging-java libcommons-parent-java libcups2 libdatrie1 731s libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 731s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 731s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 731s libgtk2.0-common libharfbuzz0b libhtsjdk-java libjaxp1.3-java libjbig0 731s libjheatchart-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17 731s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 731s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 731s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 librhino-java libsharpyuv0 731s libsnappy-java libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 731s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 731s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 731s libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 731s libxinerama1 libxml-commons-external-java libxmlgraphics-commons-java 731s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 731s openjdk-21-jre openjdk-21-jre-headless ubuntu-mono unzip x11-common 731s Suggested packages: 731s libasound2-plugins alsa-utils libasm-java libxz-java libcommons-io-java-doc 731s libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java 731s cups-common gvfs picard-tools liblcms2-utils libngs-java-doc pcscd rhino 731s libxmlgraphics-commons-java-doc libnss-mdns fonts-dejavu-extra 731s fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei 731s | fonts-wqy-zenhei fonts-indic zip 731s Recommended packages: 731s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 731s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 731s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 732s The following NEW packages will be installed: 732s adwaita-icon-theme at-spi2-common autopkgtest-satdep ca-certificates-java 732s chromhmm chromhmm-example default-jre default-jre-headless fontconfig 732s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 732s hicolor-icon-theme humanity-icon-theme java-common java-wrappers 732s libapache-pom-java libasound2 libasound2-data libatk1.0-0 libavahi-client3 732s libavahi-common-data libavahi-common3 libbatik-java libcairo2 732s libcommons-compress-java libcommons-io-java libcommons-jexl2-java 732s libcommons-logging-java libcommons-parent-java libcups2 libdatrie1 732s libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 732s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 732s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 732s libgtk2.0-common libharfbuzz0b libhtsjdk-java libjaxp1.3-java libjbig0 732s libjheatchart-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17 732s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 732s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 732s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 librhino-java libsharpyuv0 732s libsnappy-java libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 732s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 732s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 732s libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 732s libxinerama1 libxml-commons-external-java libxmlgraphics-commons-java 732s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 732s openjdk-21-jre openjdk-21-jre-headless ubuntu-mono unzip x11-common 732s 0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded. 732s Need to get 147 MB/147 MB of archives. 732s After this operation, 491 MB of additional disk space will be used. 732s Get:1 /tmp/autopkgtest.opYCPy/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 732s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 732s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 732s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 732s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 732s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 732s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 732s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 732s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 732s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 732s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 732s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 732s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 732s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 732s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 732s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 733s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 733s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 733s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 733s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 733s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 733s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 733s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 733s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 733s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 733s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 733s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 733s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 733s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 733s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 733s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 733s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 733s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 733s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 735s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 735s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 735s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 735s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 735s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 735s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 735s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 735s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 735s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 735s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 735s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 735s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 735s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 735s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 735s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 735s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 735s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 735s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 735s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 735s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 735s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 735s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 735s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 735s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 735s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 735s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 735s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 735s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 735s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 735s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 735s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 735s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 735s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 735s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 735s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 735s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 735s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 735s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 735s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 735s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 736s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 736s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 736s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 736s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 736s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 737s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 737s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 737s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 737s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 737s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 737s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 java-wrappers all 0.4 [8662 B] 737s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxp1.3-java all 1.3.05-6 [227 kB] 737s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 737s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 737s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 737s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 737s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 737s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libxmlgraphics-commons-java all 2.8-2 [619 kB] 737s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libbatik-java all 1.17+dfsg-1 [3877 kB] 737s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 737s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 737s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 737s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 737s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 737s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 737s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 737s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 737s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 737s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 737s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 737s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 737s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 737s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 737s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 737s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 737s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjheatchart-java all 0.6-1.1 [8408 B] 737s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 chromhmm all 1.25+dfsg-1 [191 kB] 737s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 chromhmm-example all 1.25+dfsg-1 [45.0 MB] 740s Fetched 147 MB in 7s (20.4 MB/s) 740s Selecting previously unselected package libgdk-pixbuf2.0-common. 740s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75470 files and directories currently installed.) 740s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 740s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 740s Selecting previously unselected package libjpeg-turbo8:arm64. 740s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 740s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 740s Selecting previously unselected package libjpeg8:arm64. 740s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 740s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 740s Selecting previously unselected package libdeflate0:arm64. 740s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 740s Unpacking libdeflate0:arm64 (1.19-1) ... 740s Selecting previously unselected package libjbig0:arm64. 740s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 740s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 740s Selecting previously unselected package liblerc4:arm64. 740s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 740s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 741s Selecting previously unselected package libsharpyuv0:arm64. 741s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 741s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 741s Selecting previously unselected package libwebp7:arm64. 741s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 741s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 741s Selecting previously unselected package libtiff6:arm64. 741s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 741s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 741s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 741s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 741s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 741s Selecting previously unselected package gtk-update-icon-cache. 741s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 741s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 741s Selecting previously unselected package hicolor-icon-theme. 741s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 741s Unpacking hicolor-icon-theme (0.17-2) ... 741s Selecting previously unselected package humanity-icon-theme. 741s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 741s Unpacking humanity-icon-theme (0.6.16) ... 743s Selecting previously unselected package ubuntu-mono. 744s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 744s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 745s Selecting previously unselected package adwaita-icon-theme. 745s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 745s Unpacking adwaita-icon-theme (46~rc-1) ... 745s Selecting previously unselected package at-spi2-common. 745s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 745s Unpacking at-spi2-common (2.50.0-1) ... 745s Selecting previously unselected package ca-certificates-java. 745s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 745s Unpacking ca-certificates-java (20240118) ... 745s Selecting previously unselected package java-common. 745s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 745s Unpacking java-common (0.75+exp1) ... 745s Selecting previously unselected package libavahi-common-data:arm64. 746s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 746s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 746s Selecting previously unselected package libavahi-common3:arm64. 746s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 746s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 746s Selecting previously unselected package libavahi-client3:arm64. 746s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 746s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 746s Selecting previously unselected package libcups2:arm64. 746s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 746s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 746s Selecting previously unselected package liblcms2-2:arm64. 746s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 746s Unpacking liblcms2-2:arm64 (2.14-2) ... 746s Selecting previously unselected package fonts-dejavu-mono. 746s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 746s Unpacking fonts-dejavu-mono (2.37-8) ... 746s Selecting previously unselected package fonts-dejavu-core. 746s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 746s Unpacking fonts-dejavu-core (2.37-8) ... 746s Selecting previously unselected package fontconfig-config. 746s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 747s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 747s Selecting previously unselected package libfontconfig1:arm64. 747s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 747s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 747s Selecting previously unselected package libasound2-data. 747s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 747s Unpacking libasound2-data (1.2.10-3build1) ... 747s Selecting previously unselected package libasound2:arm64. 747s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 747s Unpacking libasound2:arm64 (1.2.10-3build1) ... 747s Selecting previously unselected package libgraphite2-3:arm64. 747s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 747s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 747s Selecting previously unselected package libharfbuzz0b:arm64. 747s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 747s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 747s Selecting previously unselected package libpcsclite1:arm64. 747s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 747s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 747s Selecting previously unselected package openjdk-21-jre-headless:arm64. 747s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 747s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 750s Selecting previously unselected package default-jre-headless. 750s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 750s Unpacking default-jre-headless (2:1.21-75+exp1) ... 750s Selecting previously unselected package libgtk2.0-common. 750s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 750s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 750s Selecting previously unselected package libatk1.0-0:arm64. 750s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 750s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 750s Selecting previously unselected package libpixman-1-0:arm64. 750s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 750s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 751s Selecting previously unselected package libxcb-render0:arm64. 751s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 751s Unpacking libxcb-render0:arm64 (1.15-1) ... 751s Selecting previously unselected package libxcb-shm0:arm64. 751s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 751s Unpacking libxcb-shm0:arm64 (1.15-1) ... 751s Selecting previously unselected package libxrender1:arm64. 751s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 751s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 751s Selecting previously unselected package libcairo2:arm64. 751s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 751s Unpacking libcairo2:arm64 (1.18.0-1) ... 751s Selecting previously unselected package fontconfig. 751s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 751s Unpacking fontconfig (2.15.0-1ubuntu1) ... 751s Selecting previously unselected package libthai-data. 751s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 751s Unpacking libthai-data (0.1.29-2) ... 751s Selecting previously unselected package libdatrie1:arm64. 751s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 751s Unpacking libdatrie1:arm64 (0.2.13-3) ... 751s Selecting previously unselected package libthai0:arm64. 751s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 751s Unpacking libthai0:arm64 (0.1.29-2) ... 751s Selecting previously unselected package libpango-1.0-0:arm64. 751s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 751s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 751s Selecting previously unselected package libpangoft2-1.0-0:arm64. 751s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 751s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 751s Selecting previously unselected package libpangocairo-1.0-0:arm64. 751s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 751s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 751s Selecting previously unselected package libxcomposite1:arm64. 751s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 751s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 751s Selecting previously unselected package libxfixes3:arm64. 751s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 751s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 751s Selecting previously unselected package libxcursor1:arm64. 751s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 751s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 752s Selecting previously unselected package libxdamage1:arm64. 752s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 752s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 752s Selecting previously unselected package libxi6:arm64. 752s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 752s Unpacking libxi6:arm64 (2:1.8.1-1) ... 752s Selecting previously unselected package libxinerama1:arm64. 752s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 752s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 752s Selecting previously unselected package libxrandr2:arm64. 752s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 752s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 752s Selecting previously unselected package libgtk2.0-0:arm64. 752s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 752s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 752s Selecting previously unselected package libglvnd0:arm64. 752s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 752s Unpacking libglvnd0:arm64 (1.7.0-1) ... 752s Selecting previously unselected package libglapi-mesa:arm64. 752s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 752s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 752s Selecting previously unselected package libx11-xcb1:arm64. 752s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 752s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 752s Selecting previously unselected package libxcb-dri2-0:arm64. 752s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 752s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 752s Selecting previously unselected package libxcb-dri3-0:arm64. 752s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 752s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 752s Selecting previously unselected package libxcb-glx0:arm64. 752s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 752s Unpacking libxcb-glx0:arm64 (1.15-1) ... 752s Selecting previously unselected package libxcb-present0:arm64. 752s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 752s Unpacking libxcb-present0:arm64 (1.15-1) ... 752s Selecting previously unselected package libxcb-randr0:arm64. 753s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 753s Unpacking libxcb-randr0:arm64 (1.15-1) ... 753s Selecting previously unselected package libxcb-sync1:arm64. 753s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 753s Unpacking libxcb-sync1:arm64 (1.15-1) ... 753s Selecting previously unselected package libxcb-xfixes0:arm64. 753s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 753s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 753s Selecting previously unselected package libxshmfence1:arm64. 753s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 753s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 753s Selecting previously unselected package libxxf86vm1:arm64. 753s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 753s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 753s Selecting previously unselected package libvulkan1:arm64. 753s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 753s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 753s Selecting previously unselected package libdrm-amdgpu1:arm64. 753s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 753s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 753s Selecting previously unselected package libdrm-nouveau2:arm64. 753s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 753s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 753s Selecting previously unselected package libdrm-radeon1:arm64. 753s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 753s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 753s Selecting previously unselected package libllvm17:arm64. 753s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 753s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 755s Selecting previously unselected package libgl1-mesa-dri:arm64. 755s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 755s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 755s Selecting previously unselected package libglx-mesa0:arm64. 755s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 755s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 755s Selecting previously unselected package libglx0:arm64. 755s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 755s Unpacking libglx0:arm64 (1.7.0-1) ... 756s Selecting previously unselected package libgl1:arm64. 756s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 756s Unpacking libgl1:arm64 (1.7.0-1) ... 756s Selecting previously unselected package libgif7:arm64. 756s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 756s Unpacking libgif7:arm64 (5.2.1-2.5) ... 756s Selecting previously unselected package x11-common. 756s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 756s Unpacking x11-common (1:7.7+23ubuntu2) ... 756s Selecting previously unselected package libxtst6:arm64. 756s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 756s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 756s Selecting previously unselected package openjdk-21-jre:arm64. 756s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 756s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 756s Selecting previously unselected package default-jre. 756s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 756s Unpacking default-jre (2:1.21-75+exp1) ... 756s Selecting previously unselected package unzip. 756s Preparing to unpack .../082-unzip_6.0-28ubuntu3_arm64.deb ... 756s Unpacking unzip (6.0-28ubuntu3) ... 756s Selecting previously unselected package java-wrappers. 756s Preparing to unpack .../083-java-wrappers_0.4_all.deb ... 756s Unpacking java-wrappers (0.4) ... 756s Selecting previously unselected package libjaxp1.3-java. 756s Preparing to unpack .../084-libjaxp1.3-java_1.3.05-6_all.deb ... 756s Unpacking libjaxp1.3-java (1.3.05-6) ... 756s Selecting previously unselected package libxml-commons-external-java. 756s Preparing to unpack .../085-libxml-commons-external-java_1.4.01-6_all.deb ... 756s Unpacking libxml-commons-external-java (1.4.01-6) ... 756s Selecting previously unselected package libapache-pom-java. 756s Preparing to unpack .../086-libapache-pom-java_29-2_all.deb ... 756s Unpacking libapache-pom-java (29-2) ... 756s Selecting previously unselected package libcommons-parent-java. 756s Preparing to unpack .../087-libcommons-parent-java_56-1_all.deb ... 756s Unpacking libcommons-parent-java (56-1) ... 756s Selecting previously unselected package libcommons-io-java. 757s Preparing to unpack .../088-libcommons-io-java_2.11.0-2_all.deb ... 757s Unpacking libcommons-io-java (2.11.0-2) ... 757s Selecting previously unselected package libcommons-logging-java. 757s Preparing to unpack .../089-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 757s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 757s Selecting previously unselected package libxmlgraphics-commons-java. 757s Preparing to unpack .../090-libxmlgraphics-commons-java_2.8-2_all.deb ... 757s Unpacking libxmlgraphics-commons-java (2.8-2) ... 757s Selecting previously unselected package libbatik-java. 757s Preparing to unpack .../091-libbatik-java_1.17+dfsg-1_all.deb ... 757s Unpacking libbatik-java (1.17+dfsg-1) ... 757s Selecting previously unselected package libcommons-compress-java. 757s Preparing to unpack .../092-libcommons-compress-java_1.25.0-1_all.deb ... 757s Unpacking libcommons-compress-java (1.25.0-1) ... 757s Selecting previously unselected package libcommons-jexl2-java. 757s Preparing to unpack .../093-libcommons-jexl2-java_2.1.1-6_all.deb ... 757s Unpacking libcommons-jexl2-java (2.1.1-6) ... 757s Selecting previously unselected package libmjson-java. 757s Preparing to unpack .../094-libmjson-java_1.4.0-3_all.deb ... 757s Unpacking libmjson-java (1.4.0-3) ... 757s Selecting previously unselected package libmbedcrypto7:arm64. 757s Preparing to unpack .../095-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 757s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 757s Selecting previously unselected package libmbedx509-1:arm64. 757s Preparing to unpack .../096-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 757s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 757s Selecting previously unselected package libmbedtls14:arm64. 757s Preparing to unpack .../097-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 757s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 757s Selecting previously unselected package ncbi-vdb-data. 757s Preparing to unpack .../098-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 757s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 758s Selecting previously unselected package libncbi-vdb3:arm64. 758s Preparing to unpack .../099-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 758s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 758s Selecting previously unselected package libncbi-ngs3:arm64. 758s Preparing to unpack .../100-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 758s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 758s Selecting previously unselected package libngs-jni:arm64. 758s Preparing to unpack .../101-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 758s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 758s Selecting previously unselected package libngs-java:arm64. 758s Preparing to unpack .../102-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 758s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 758s Selecting previously unselected package librhino-java. 758s Preparing to unpack .../103-librhino-java_1.7.14-2.1_all.deb ... 758s Unpacking librhino-java (1.7.14-2.1) ... 758s Selecting previously unselected package libsnappy1v5:arm64. 758s Preparing to unpack .../104-libsnappy1v5_1.1.10-1_arm64.deb ... 758s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 758s Selecting previously unselected package libsnappy-jni. 758s Preparing to unpack .../105-libsnappy-jni_1.1.10.5-1_arm64.deb ... 758s Unpacking libsnappy-jni (1.1.10.5-1) ... 758s Selecting previously unselected package libsnappy-java. 758s Preparing to unpack .../106-libsnappy-java_1.1.10.5-1_all.deb ... 758s Unpacking libsnappy-java (1.1.10.5-1) ... 758s Selecting previously unselected package libhtsjdk-java. 758s Preparing to unpack .../107-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 758s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 758s Selecting previously unselected package libjheatchart-java. 758s Preparing to unpack .../108-libjheatchart-java_0.6-1.1_all.deb ... 758s Unpacking libjheatchart-java (0.6-1.1) ... 758s Selecting previously unselected package chromhmm. 758s Preparing to unpack .../109-chromhmm_1.25+dfsg-1_all.deb ... 758s Unpacking chromhmm (1.25+dfsg-1) ... 758s Selecting previously unselected package chromhmm-example. 758s Preparing to unpack .../110-chromhmm-example_1.25+dfsg-1_all.deb ... 758s Unpacking chromhmm-example (1.25+dfsg-1) ... 759s Selecting previously unselected package autopkgtest-satdep. 759s Preparing to unpack .../111-2-autopkgtest-satdep.deb ... 759s Unpacking autopkgtest-satdep (0) ... 759s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 759s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 759s Setting up liblcms2-2:arm64 (2.14-2) ... 759s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 759s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 759s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 759s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 759s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 759s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 759s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 759s Setting up hicolor-icon-theme (0.17-2) ... 759s Setting up libxi6:arm64 (2:1.8.1-1) ... 759s Setting up java-common (0.75+exp1) ... 759s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 759s Setting up libdatrie1:arm64 (0.2.13-3) ... 759s Setting up libxcb-render0:arm64 (1.15-1) ... 759s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 759s Setting up libglvnd0:arm64 (1.7.0-1) ... 759s Setting up libmjson-java (1.4.0-3) ... 759s Setting up libxcb-glx0:arm64 (1.15-1) ... 759s Setting up unzip (6.0-28ubuntu3) ... 759s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 759s Setting up x11-common (1:7.7+23ubuntu2) ... 760s Setting up libdeflate0:arm64 (1.19-1) ... 760s Setting up libxcb-shm0:arm64 (1.15-1) ... 760s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 760s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 760s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 760s Setting up libxcb-present0:arm64 (1.15-1) ... 760s Setting up libasound2-data (1.2.10-3build1) ... 760s Setting up chromhmm-example (1.25+dfsg-1) ... 760s Setting up librhino-java (1.7.14-2.1) ... 760s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 760s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 760s Setting up libxcb-sync1:arm64 (1.15-1) ... 760s Setting up libapache-pom-java (29-2) ... 760s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 760s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 760s Setting up fonts-dejavu-mono (2.37-8) ... 760s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 760s Setting up fonts-dejavu-core (2.37-8) ... 760s Setting up libpcsclite1:arm64 (2.0.0-1) ... 760s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 760s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 761s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 761s Setting up libwebp7:arm64 (1.3.2-0.4) ... 761s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 761s Setting up libgif7:arm64 (5.2.1-2.5) ... 761s Setting up libxshmfence1:arm64 (1.3-1build4) ... 761s Setting up at-spi2-common (2.50.0-1) ... 761s Setting up libxcb-randr0:arm64 (1.15-1) ... 761s Setting up libxml-commons-external-java (1.4.01-6) ... 761s Setting up libasound2:arm64 (1.2.10-3build1) ... 761s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 761s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 761s Setting up libthai-data (0.1.29-2) ... 761s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 761s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 761s Setting up ca-certificates-java (20240118) ... 761s No JRE found. Skipping Java certificates setup. 761s Setting up libjheatchart-java (0.6-1.1) ... 761s Setting up libjaxp1.3-java (1.3.05-6) ... 761s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 761s Setting up libsnappy-jni (1.1.10.5-1) ... 761s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 761s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 761s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 761s Setting up java-wrappers (0.4) ... 761s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 761s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 761s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 761s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 761s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 761s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 761s Setting up libcommons-parent-java (56-1) ... 761s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 761s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 761s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 761s Setting up libcommons-jexl2-java (2.1.1-6) ... 761s Setting up libthai0:arm64 (0.1.29-2) ... 761s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 761s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 761s Setting up libsnappy-java (1.1.10.5-1) ... 761s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 761s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 761s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 761s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 761s Setting up fontconfig (2.15.0-1ubuntu1) ... 763s Regenerating fonts cache... done. 763s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 763s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 763s Setting up libglx0:arm64 (1.7.0-1) ... 763s Setting up libcommons-compress-java (1.25.0-1) ... 763s Setting up libcommons-io-java (2.11.0-2) ... 763s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 763s Setting up libxmlgraphics-commons-java (2.8-2) ... 763s Setting up libcairo2:arm64 (1.18.0-1) ... 763s Setting up libgl1:arm64 (1.7.0-1) ... 763s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 763s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 763s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 763s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 763s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 763s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 763s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 763s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 763s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 763s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 763s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 763s Setting up libbatik-java (1.17+dfsg-1) ... 763s Setting up adwaita-icon-theme (46~rc-1) ... 763s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 763s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 763s Setting up humanity-icon-theme (0.6.16) ... 764s Setting up ubuntu-mono (24.04-0ubuntu1) ... 764s Processing triggers for man-db (2.12.0-3) ... 765s Processing triggers for libc-bin (2.39-0ubuntu6) ... 765s Processing triggers for ca-certificates-java (20240118) ... 766s Adding debian:ACCVRAIZ1.pem 766s Adding debian:AC_RAIZ_FNMT-RCM.pem 766s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 767s Adding debian:ANF_Secure_Server_Root_CA.pem 767s Adding debian:Actalis_Authentication_Root_CA.pem 767s Adding debian:AffirmTrust_Commercial.pem 767s Adding debian:AffirmTrust_Networking.pem 767s Adding debian:AffirmTrust_Premium.pem 767s Adding debian:AffirmTrust_Premium_ECC.pem 767s Adding debian:Amazon_Root_CA_1.pem 767s Adding debian:Amazon_Root_CA_2.pem 767s Adding debian:Amazon_Root_CA_3.pem 767s Adding debian:Amazon_Root_CA_4.pem 767s Adding debian:Atos_TrustedRoot_2011.pem 767s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 767s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 767s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 767s Adding debian:BJCA_Global_Root_CA1.pem 767s Adding debian:BJCA_Global_Root_CA2.pem 767s Adding debian:Baltimore_CyberTrust_Root.pem 767s Adding debian:Buypass_Class_2_Root_CA.pem 767s Adding debian:Buypass_Class_3_Root_CA.pem 767s Adding debian:CA_Disig_Root_R2.pem 767s Adding debian:CFCA_EV_ROOT.pem 767s Adding debian:COMODO_Certification_Authority.pem 767s Adding debian:COMODO_ECC_Certification_Authority.pem 767s Adding debian:COMODO_RSA_Certification_Authority.pem 767s Adding debian:Certainly_Root_E1.pem 767s Adding debian:Certainly_Root_R1.pem 767s Adding debian:Certigna.pem 767s Adding debian:Certigna_Root_CA.pem 767s Adding debian:Certum_EC-384_CA.pem 767s Adding debian:Certum_Trusted_Network_CA.pem 767s Adding debian:Certum_Trusted_Network_CA_2.pem 767s Adding debian:Certum_Trusted_Root_CA.pem 767s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 767s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 767s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 767s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 767s Adding debian:Comodo_AAA_Services_root.pem 767s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 767s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 767s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 767s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 767s Adding debian:DigiCert_Assured_ID_Root_CA.pem 767s Adding debian:DigiCert_Assured_ID_Root_G2.pem 767s Adding debian:DigiCert_Assured_ID_Root_G3.pem 767s Adding debian:DigiCert_Global_Root_CA.pem 767s Adding debian:DigiCert_Global_Root_G2.pem 767s Adding debian:DigiCert_Global_Root_G3.pem 767s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 767s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 767s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 767s Adding debian:DigiCert_Trusted_Root_G4.pem 767s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 767s Adding debian:Entrust_Root_Certification_Authority.pem 767s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 767s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 767s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 767s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 767s Adding debian:GLOBALTRUST_2020.pem 767s Adding debian:GTS_Root_R1.pem 767s Adding debian:GTS_Root_R2.pem 767s Adding debian:GTS_Root_R3.pem 767s Adding debian:GTS_Root_R4.pem 767s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 767s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 767s Adding debian:GlobalSign_Root_CA.pem 767s Adding debian:GlobalSign_Root_CA_-_R3.pem 767s Adding debian:GlobalSign_Root_CA_-_R6.pem 767s Adding debian:GlobalSign_Root_E46.pem 767s Adding debian:GlobalSign_Root_R46.pem 767s Adding debian:Go_Daddy_Class_2_CA.pem 767s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 767s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 767s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 767s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 767s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 767s Adding debian:HiPKI_Root_CA_-_G1.pem 767s Adding debian:Hongkong_Post_Root_CA_3.pem 767s Adding debian:ISRG_Root_X1.pem 767s Adding debian:ISRG_Root_X2.pem 767s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 767s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 767s Adding debian:Izenpe.com.pem 767s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 767s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 767s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 767s Adding debian:NAVER_Global_Root_Certification_Authority.pem 767s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 767s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 767s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 767s Adding debian:QuoVadis_Root_CA_1_G3.pem 767s Adding debian:QuoVadis_Root_CA_2.pem 767s Adding debian:QuoVadis_Root_CA_2_G3.pem 767s Adding debian:QuoVadis_Root_CA_3.pem 767s Adding debian:QuoVadis_Root_CA_3_G3.pem 767s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 767s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 767s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 767s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 767s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 768s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 768s Adding debian:SZAFIR_ROOT_CA2.pem 768s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 768s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 768s Adding debian:SecureSign_RootCA11.pem 768s Adding debian:SecureTrust_CA.pem 768s Adding debian:Secure_Global_CA.pem 768s Adding debian:Security_Communication_ECC_RootCA1.pem 768s Adding debian:Security_Communication_RootCA2.pem 768s Adding debian:Security_Communication_RootCA3.pem 768s Adding debian:Security_Communication_Root_CA.pem 768s Adding debian:Starfield_Class_2_CA.pem 768s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 768s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 768s Adding debian:SwissSign_Gold_CA_-_G2.pem 768s Adding debian:SwissSign_Silver_CA_-_G2.pem 768s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 768s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 768s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 768s Adding debian:TWCA_Global_Root_CA.pem 768s Adding debian:TWCA_Root_Certification_Authority.pem 768s Adding debian:TeliaSonera_Root_CA_v1.pem 768s Adding debian:Telia_Root_CA_v2.pem 768s Adding debian:TrustAsia_Global_Root_CA_G3.pem 768s Adding debian:TrustAsia_Global_Root_CA_G4.pem 768s Adding debian:Trustwave_Global_Certification_Authority.pem 768s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 768s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 768s Adding debian:TunTrust_Root_CA.pem 768s Adding debian:UCA_Extended_Validation_Root.pem 768s Adding debian:UCA_Global_G2_Root.pem 768s Adding debian:USERTrust_ECC_Certification_Authority.pem 768s Adding debian:USERTrust_RSA_Certification_Authority.pem 768s Adding debian:XRamp_Global_CA_Root.pem 768s Adding debian:certSIGN_ROOT_CA.pem 768s Adding debian:certSIGN_Root_CA_G2.pem 768s Adding debian:e-Szigno_Root_CA_2017.pem 768s Adding debian:ePKI_Root_Certification_Authority.pem 768s Adding debian:emSign_ECC_Root_CA_-_C3.pem 768s Adding debian:emSign_ECC_Root_CA_-_G3.pem 768s Adding debian:emSign_Root_CA_-_C1.pem 768s Adding debian:emSign_Root_CA_-_G1.pem 768s Adding debian:vTrus_ECC_Root_CA.pem 768s Adding debian:vTrus_Root_CA.pem 768s done. 768s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 768s Setting up default-jre-headless (2:1.21-75+exp1) ... 768s Setting up chromhmm (1.25+dfsg-1) ... 768s Setting up autopkgtest-satdep (0) ... 768s Setting up default-jre (2:1.21-75+exp1) ... 778s (Reading database ... 90057 files and directories currently installed.) 778s Removing autopkgtest-satdep (0) ... 787s autopkgtest [18:35:23]: test chromhmm-run-sample-analysis: [----------------------- 788s This is Version 1.25 of ChromHMM (c) Copyright 2008-2012 Massachusetts Institute of Technology 788s Need to specify the mode BinarizeBam|BinarizeBed|BinarizeSignal|CompareModels|ConvertGeneTable|EvalSubset|LearnModel|MakeBrowserFiles|MakeSegmentation|MergeBinary|NeighborhoodEnrichment|StatePruning|OverlapEnrichment|Reorder|Version 788s autopkgtest [18:35:24]: test chromhmm-run-sample-analysis: -----------------------] 789s autopkgtest [18:35:25]: test chromhmm-run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 789s chromhmm-run-sample-analysis PASS 790s autopkgtest [18:35:26]: test drop-seq-run-unit-test: preparing testbed 942s autopkgtest [18:37:58]: testbed dpkg architecture: arm64 943s autopkgtest [18:37:59]: testbed apt version: 2.7.12 943s autopkgtest [18:37:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 949s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 950s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 950s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 950s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 950s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 951s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 951s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 951s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 951s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 951s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 951s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 951s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 951s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 960s Fetched 9848 kB in 9s (1095 kB/s) 961s Reading package lists... 966s Reading package lists... 967s Building dependency tree... 967s Reading state information... 969s Calculating upgrade... 970s The following packages will be REMOVED: 970s libmagic1 libssl3 970s The following NEW packages will be installed: 970s libmagic1t64 libssl3t64 970s The following packages have been kept back: 970s curl 970s The following packages will be upgraded: 970s file libmagic-mgc openssl 970s 3 upgraded, 2 newly installed, 2 to remove and 1 not upgraded. 970s Need to get 3192 kB of archives. 970s After this operation, 145 kB of additional disk space will be used. 970s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 970s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 971s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 971s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 971s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 972s Fetched 3192 kB in 1s (3734 kB/s) 972s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 972s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 972s Unpacking file (1:5.45-3) over (1:5.45-2) ... 972s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 972s Removing libmagic1:arm64 (1:5.45-2) ... 973s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 973s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 973s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 973s Selecting previously unselected package libmagic1t64:arm64. 973s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 973s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 973s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 973s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 974s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 974s wget depends on libssl3 (>= 3.0.0). 974s u-boot-tools depends on libssl3 (>= 3.0.0). 974s tnftp depends on libssl3 (>= 3.0.0). 974s tcpdump depends on libssl3 (>= 3.0.0). 974s systemd-resolved depends on libssl3 (>= 3.0.0). 974s systemd depends on libssl3 (>= 3.0.0). 974s sudo depends on libssl3 (>= 3.0.0). 974s sbsigntool depends on libssl3 (>= 3.0.0). 974s rsync depends on libssl3 (>= 3.0.0). 974s python3-cryptography depends on libssl3 (>= 3.0.0). 974s openssh-server depends on libssl3 (>= 3.0.10). 974s openssh-client depends on libssl3 (>= 3.0.10). 974s mtd-utils depends on libssl3 (>= 3.0.0). 974s mokutil depends on libssl3 (>= 3.0.0). 974s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 974s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 974s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 974s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 974s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 974s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 974s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 974s libnvme1 depends on libssl3 (>= 3.0.0). 974s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 974s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 974s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 974s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 974s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 974s kmod depends on libssl3 (>= 3.0.0). 974s dhcpcd-base depends on libssl3 (>= 3.0.0). 974s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 974s 974s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 974s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 974s Selecting previously unselected package libssl3t64:arm64. 974s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 974s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 974s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 974s Setting up libmagic-mgc (1:5.45-3) ... 974s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 974s Setting up libmagic1t64:arm64 (1:5.45-3) ... 974s Setting up file (1:5.45-3) ... 974s Setting up openssl (3.0.13-0ubuntu2) ... 974s Processing triggers for man-db (2.12.0-3) ... 975s Processing triggers for libc-bin (2.39-0ubuntu6) ... 976s Reading package lists... 977s Building dependency tree... 977s Reading state information... 979s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 981s sh: Attempting to set up Debian/Ubuntu apt sources automatically 981s sh: Distribution appears to be Ubuntu 983s Reading package lists... 984s Building dependency tree... 984s Reading state information... 986s eatmydata is already the newest version (131-1). 986s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 986s Reading package lists... 986s Building dependency tree... 986s Reading state information... 988s dbus is already the newest version (1.14.10-4ubuntu1). 988s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 988s Reading package lists... 989s Building dependency tree... 989s Reading state information... 990s rng-tools-debian is already the newest version (2.4). 990s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 990s Reading package lists... 991s Building dependency tree... 991s Reading state information... 992s The following packages will be REMOVED: 992s cloud-init* python3-configobj* python3-debconf* 993s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 993s After this operation, 3256 kB disk space will be freed. 993s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 994s Removing cloud-init (24.1.2-0ubuntu1) ... 996s Removing python3-configobj (5.0.8-3) ... 996s Removing python3-debconf (1.5.86) ... 996s Processing triggers for man-db (2.12.0-3) ... 997s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75525 files and directories currently installed.) 997s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 1000s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1000s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1000s invoke-rc.d: policy-rc.d denied execution of try-restart. 1000s Reading package lists... 1001s Building dependency tree... 1001s Reading state information... 1002s linux-generic is already the newest version (6.8.0-11.11+1). 1002s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1003s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1003s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1003s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1013s Reading package lists... 1013s Reading package lists... 1013s Building dependency tree... 1013s Reading state information... 1015s Calculating upgrade... 1016s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1016s Reading package lists... 1016s Building dependency tree... 1016s Reading state information... 1018s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1019s autopkgtest [18:39:15]: rebooting testbed after setup commands that affected boot 1189s Reading package lists... 1189s Building dependency tree... 1189s Reading state information... 1190s Starting pkgProblemResolver with broken count: 0 1190s Starting 2 pkgProblemResolver with broken count: 0 1190s Done 1192s The following additional packages will be installed: 1192s adwaita-icon-theme ant ant-optional at-spi2-common ca-certificates-java 1192s default-jre default-jre-headless drop-seq-testdata drop-seq-tools fontconfig 1192s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 1192s hicolor-icon-theme humanity-icon-theme java-common java-wrappers 1192s libactivation-java libantlr4-runtime-java libaopalliance-java 1192s libapache-pom-java libapfloat-java libargs4j-java libasm-java libasound2 1192s libasound2-data libatinject-jsr330-api-java libatk1.0-0 libavahi-client3 1192s libavahi-common-data libavahi-common3 libbarclay-java libbiojava6-java 1192s libcairo2 libcdi-api-java libciftools-java libcodemodel-java 1192s libcommons-cli-java libcommons-codec-java libcommons-collections4-java 1192s libcommons-compress-java libcommons-exec-java libcommons-io-java 1192s libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java 1192s libcommons-logging-java libcommons-math-java libcommons-math3-java 1192s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 1192s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 1192s libdtd-parser-java liberror-prone-java libexec-maven-plugin-java 1192s libfastinfoset-java libfastutil-java libfontconfig1 libfreemarker-java 1192s libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 1192s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 1192s libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 1192s libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 1192s libgtk2.0-common libguava-java libguice-java libharfbuzz0b libhts3 1192s libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libinchi1 1192s libistack-commons-java libitext5-java libjackson2-annotations-java 1192s libjackson2-core-java libjackson2-databind-java libjaxb-api-java 1192s libjaxb-java libjaxen-java libjbig0 libjgrapht-java libjgraphx-java 1192s libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni 1192s libjoptsimple-java libjpeg-turbo8 libjpeg8 libjson-simple-java libjsoup-java 1192s libjsr305-java libla4j-java liblcms2-2 liblerc4 liblightcouch-java libllvm17 1192s liblog4j1.2-java liblog4j2-java libmaven-archiver-java 1192s libmaven-compiler-plugin-java libmaven-file-management-java 1192s libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java 1192s libmaven-shared-incremental-java libmaven-shared-io-java 1192s libmaven-shared-utils-java libmaven3-core-java libmbedcrypto7 libmbedtls14 1192s libmbedx509-1 libmjson-java libmmtf-java libmongodb-java libmsgpack-java 1192s libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 1192s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpicard-java 1192s libpixman-1-0 libplexus-archiver-java libplexus-cipher-java 1192s libplexus-classworlds-java libplexus-compiler-java 1192s libplexus-component-annotations-java libplexus-container-default-java 1192s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 1192s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox2-java 1192s librelaxng-datatype-java librhino-java librngom-java libsharpyuv0 1192s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 1192s libsnappy-jni libsnappy1v5 libstax-ex-java libstreambuffer-java libthai-data 1192s libthai0 libtiff6 libtxw2-java libvecmath-java libvulkan1 libwagon-http-java 1192s libwagon-provider-api-java libwebp7 libx11-xcb1 libxbean-reflect-java 1192s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 1192s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 1192s libxcursor1 libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 1192s libxml-commons-external-java libxml-commons-resolver1.1-java libxrandr2 1192s libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java 1192s libyaml-snake-java ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless 1192s picard-tools samtools ubuntu-mono unzip x11-common 1192s Suggested packages: 1192s ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit junit4 1192s jython libbcel-java libbsf-java libcommons-net-java libmail-java 1192s libjaxp1.3-java libjdepend-java libjsch-java liboro-java libregexp-java 1192s libxalan2-java libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc 1192s libbiojava6-java-doc libel-api-java libcommons-collections4-java-doc 1192s libcommons-io-java-doc libcommons-lang-java-doc libavalon-framework-java 1192s libexcalibur-logkit-java cups-common libmsv-java libxpp2-java libxpp3-java 1192s libjdom1-java libgoogle-gson-java-doc gvfs libcglib-java libbcpkix-java 1192s libbcprov-java libxml-security-java libjackson2-annotations-java-doc 1192s libxom-java libjmol-java-doc libjoptsimple-java-doc libjson-simple-doc 1192s libjsoup-java-doc libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc 1192s libcommons-csv-java libconversant-disruptor-java libdisruptor-java 1192s libgeronimo-jms-1.1-spec-java libjackson2-dataformat-xml-java 1192s libjackson2-dataformat-yaml libjansi-java libjctools-java libjeromq-java 1192s libwoodstox-java libmaven-file-management-java-doc 1192s libmaven-shared-incremental-java-doc libmaven-shared-utils-java-doc 1192s liblogback-java libmmtf-java-doc libngs-java-doc pcscd 1192s libeclipse-jdt-core-java libplexus-utils2-java-doc rhino testng 1192s libxerces2-java-doc libxml-commons-resolver1.1-java-doc libnss-mdns 1192s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 1192s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic cwltool zip 1192s Recommended packages: 1192s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 1192s libgkl-jni libgl1-amber-dri libgail-common libgtk2.0-bin libjansi-java 1192s r-base-core mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni 1192s fonts-dejavu-extra 1192s The following NEW packages will be installed: 1192s adwaita-icon-theme ant ant-optional at-spi2-common autopkgtest-satdep 1192s ca-certificates-java default-jre default-jre-headless drop-seq-testdata 1192s drop-seq-tools fontconfig fontconfig-config fonts-dejavu-core 1192s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 1192s humanity-icon-theme java-common java-wrappers libactivation-java 1192s libantlr4-runtime-java libaopalliance-java libapache-pom-java 1192s libapfloat-java libargs4j-java libasm-java libasound2 libasound2-data 1192s libatinject-jsr330-api-java libatk1.0-0 libavahi-client3 1192s libavahi-common-data libavahi-common3 libbarclay-java libbiojava6-java 1192s libcairo2 libcdi-api-java libciftools-java libcodemodel-java 1192s libcommons-cli-java libcommons-codec-java libcommons-collections4-java 1192s libcommons-compress-java libcommons-exec-java libcommons-io-java 1192s libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java 1192s libcommons-logging-java libcommons-math-java libcommons-math3-java 1192s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 1192s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 1192s libdtd-parser-java liberror-prone-java libexec-maven-plugin-java 1192s libfastinfoset-java libfastutil-java libfontconfig1 libfreemarker-java 1192s libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 1192s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 1192s libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 1192s libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 1192s libgtk2.0-common libguava-java libguice-java libharfbuzz0b libhts3 1192s libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libinchi1 1192s libistack-commons-java libitext5-java libjackson2-annotations-java 1192s libjackson2-core-java libjackson2-databind-java libjaxb-api-java 1192s libjaxb-java libjaxen-java libjbig0 libjgrapht-java libjgraphx-java 1192s libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni 1192s libjoptsimple-java libjpeg-turbo8 libjpeg8 libjson-simple-java libjsoup-java 1192s libjsr305-java libla4j-java liblcms2-2 liblerc4 liblightcouch-java libllvm17 1192s liblog4j1.2-java liblog4j2-java libmaven-archiver-java 1192s libmaven-compiler-plugin-java libmaven-file-management-java 1192s libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java 1192s libmaven-shared-incremental-java libmaven-shared-io-java 1192s libmaven-shared-utils-java libmaven3-core-java libmbedcrypto7 libmbedtls14 1192s libmbedx509-1 libmjson-java libmmtf-java libmongodb-java libmsgpack-java 1192s libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 1192s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpicard-java 1192s libpixman-1-0 libplexus-archiver-java libplexus-cipher-java 1192s libplexus-classworlds-java libplexus-compiler-java 1192s libplexus-component-annotations-java libplexus-container-default-java 1192s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 1192s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox2-java 1192s librelaxng-datatype-java librhino-java librngom-java libsharpyuv0 1192s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 1192s libsnappy-jni libsnappy1v5 libstax-ex-java libstreambuffer-java libthai-data 1192s libthai0 libtiff6 libtxw2-java libvecmath-java libvulkan1 libwagon-http-java 1192s libwagon-provider-api-java libwebp7 libx11-xcb1 libxbean-reflect-java 1192s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 1192s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 1192s libxcursor1 libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 1192s libxml-commons-external-java libxml-commons-resolver1.1-java libxrandr2 1192s libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java 1192s libyaml-snake-java ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless 1192s picard-tools samtools ubuntu-mono unzip x11-common 1192s 0 upgraded, 218 newly installed, 0 to remove and 0 not upgraded. 1192s Need to get 320 MB/320 MB of archives. 1192s After this operation, 696 MB of additional disk space will be used. 1192s Get:1 /tmp/autopkgtest.opYCPy/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 1192s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 1192s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 1193s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 1193s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 1193s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 1193s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 1193s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 1193s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 1193s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 1193s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 1193s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 1193s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 1193s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 1193s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 1193s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 1193s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 1193s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 1193s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 1193s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 1193s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 1193s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 1193s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 1193s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 1193s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 1193s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 1193s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 1193s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 1193s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 1193s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 1193s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 1193s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 1193s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 1195s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 1195s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 ant all 1.10.14-1 [2147 kB] 1195s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 ant-optional all 1.10.14-1 [451 kB] 1195s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 1195s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 1195s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 1195s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 1195s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 1195s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 1195s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 1195s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 1196s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 1196s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 1196s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 1196s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 1196s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 1196s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 1196s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 1196s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 1196s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 1196s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 1196s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 1196s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 1196s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 1196s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 1196s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 1196s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 1196s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 1196s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 1196s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 1196s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 1196s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 1196s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 1196s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 1196s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 1196s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 1196s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 1196s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 1196s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 1196s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 1196s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 1196s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 1196s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 1197s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 1197s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 1197s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 1197s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 1197s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 1197s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1197s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 1197s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 1197s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 1197s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 drop-seq-testdata all 2.5.4+dfsg-1 [142 MB] 1204s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 1204s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 1204s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 1204s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreemarker-java all 2.3.32-2 [1542 kB] 1204s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 1204s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjoptsimple-java all 5.0.4-4 [73.1 kB] 1204s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 1204s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 1204s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 1204s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 1204s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 1204s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 1204s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 1204s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 1204s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libbarclay-java all 5.0.0+dfsg-1 [108 kB] 1204s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.2 kB] 1204s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libciftools-java all 5.0.2-1 [2191 kB] 1206s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math-java all 2.2-8 [921 kB] 1206s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] 1206s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] 1206s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] 1206s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libguava-java all 32.0.1-1 [2692 kB] 1206s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libitext5-java all 5.5.13.3-4 [2691 kB] 1206s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-annotations-java all 2.14.0-1 [64.7 kB] 1206s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-core-java all 2.14.1-1 [432 kB] 1206s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-databind-java all 2.14.0-1 [1531 kB] 1206s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libactivation-java all 1.2.0-2 [84.7 kB] 1206s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-api-java all 2.3.1-1 [119 kB] 1206s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libargs4j-java all 2.33-2 [137 kB] 1206s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxen-java all 1.1.6-4 [214 kB] 1206s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libdom4j-java all 2.1.4-1 [310 kB] 1206s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 1206s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-utils-java all 3.3.4-1 [137 kB] 1206s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-cli-java all 1.6.0-1 [59.9 kB] 1206s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libaopalliance-java all 20070526-7 [8166 B] 1206s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 libguice-java all 4.2.3-2 [1434 kB] 1206s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-parent-java all 35-1 [5810 B] 1206s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-utils2-java all 3.4.2-1 [256 kB] 1206s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-provider-api-java all 3.5.3-1 [47.9 kB] 1206s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-resolver-java all 1.6.3-1 [544 kB] 1206s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-cipher-java all 2.0-1 [14.7 kB] 1206s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-classworlds-java all 2.7.0-1 [50.0 kB] 1206s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-component-annotations-java all 2.1.1-1 [6550 B] 1206s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-interpolation-java all 1.26-1 [76.8 kB] 1206s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-sec-dispatcher-java all 2.0-3 [28.1 kB] 1206s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4fakesync [8616 B] 1206s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libcdi-api-java all 1.2-3 [54.3 kB] 1206s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-inject-java all 0.3.4-2 [347 kB] 1206s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-plexus-java all 0.3.4-3 [181 kB] 1206s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven3-core-java all 3.8.7-2 [1565 kB] 1206s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-io-java all 3.0.0-4 [32.6 kB] 1206s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] 1206s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 1206s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-io-java all 3.3.1-2 [64.4 kB] 1206s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 1206s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 1206s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 1206s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 libxz-java all 1.9-1 [140 kB] 1206s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-archiver-java all 4.6.1-1 [185 kB] 1206s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsoup-java all 1.15.3-1 [407 kB] 1206s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-http-java all 3.5.3-1 [48.8 kB] 1206s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 libistack-commons-java all 3.0.6-5 [145 kB] 1206s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 libcodemodel-java all 2.6+jaxb2.3.0.1-10.1 [164 kB] 1206s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.8 kB] 1206s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 librngom-java all 2.3.0.1-10.1 [289 kB] 1206s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 libxsom-java all 2.3.0.1-10.1 [397 kB] 1206s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 libtxw2-java all 2.3.0.1-10.1 [133 kB] 1206s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 1206s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 libdtd-parser-java all 1.2-1 [64.9 kB] 1206s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 libstax-ex-java all 1.7.8-3 [40.9 kB] 1206s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] 1206s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastinfoset-java all 1.2.12-3 [343 kB] 1206s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-java all 2.3.0.1-10.1 [1967 kB] 1206s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr4-runtime-java all 4.9.2-2 [308 kB] 1206s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 libapfloat-java all 1.13.0-1 [698 kB] 1206s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-archiver-java all 3.6.0-1 [25.3 kB] 1206s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-jar-plugin-java all 3.3.0-2 [23.9 kB] 1206s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-text-java all 1.11.0-1 [215 kB] 1206s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] 1207s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 libjheaps-java all 0.14-2 [143 kB] 1207s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 1207s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces2-java all 2.12.2-1 [1430 kB] 1207s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgraphx-java all 2.1.0.7-3 [801 kB] 1207s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgrapht-java all 1.5.2-1 [1584 kB] 1207s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 libinchi1 arm64 1.03+dfsg-4 [448 kB] 1207s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-jni arm64 0.8+dfsg-7 [10.0 kB] 1207s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-exec-java all 1.3-2 [48.1 kB] 1207s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 libexec-maven-plugin-java all 3.1.0-2 [66.1 kB] 1207s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-incremental-java all 1.1-4 [9904 B] 1207s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 1207s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libxbean-reflect-java all 4.5-8 [132 kB] 1207s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-container-default-java all 2.1.1-1 [191 kB] 1207s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-compiler-java all 2.12.1-2 [98.4 kB] 1207s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 libasm-java all 9.6~us1-0ubuntu1 [386 kB] 1207s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 libqdox2-java all 2.0.3-1 [296 kB] 1207s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-languages-java all 1.1.1-2 [46.8 kB] 1207s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-compiler-plugin-java all 3.10.1-2 [58.5 kB] 1207s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 1207s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-java all 0.8+dfsg-7 [32.3 kB] 1207s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libnaga-java all 3.0+svn80-5 [43.5 kB] 1207s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libjmol-java all 14.32.83+dfsg-3 [8469 kB] 1208s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 libjson-simple-java all 2.3.0-1 [61.0 kB] 1208s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 libmsgpack-java all 0.9.6-1 [159 kB] 1208s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 libmmtf-java all 1.0.11-1 [184 kB] 1208s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libvecmath-java all 1.5.2-7 [96.9 kB] 1208s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libbiojava6-java all 6.1.0+dfsg-4 [5330 kB] 1208s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-collections4-java all 4.4-2 [670 kB] 1208s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math3-java all 3.6.1-3 [2016 kB] 1208s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 1208s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 1208s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 1208s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 1208s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 1208s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 1208s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 1208s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 1208s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 1208s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 1208s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 1209s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 1209s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 libla4j-java all 0.6.0-4 [224 kB] 1209s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libgatk-native-bindings-java all 1.0.0+dfsg-2 [8014 B] 1209s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libgkl-java all 0.8.11+dfsg-2 [24.8 kB] 1209s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libpicard-java all 3.1.1+dfsg-1 [1731 kB] 1209s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libyaml-snake-java all 1.33-2 [320 kB] 1209s Get:212 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 1209s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 java-wrappers all 0.4 [8662 B] 1209s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 picard-tools all 3.1.1+dfsg-1 [308 kB] 1209s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 drop-seq-tools all 2.5.4+dfsg-1 [570 kB] 1209s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 1209s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 1209s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 samtools arm64 1.19.2-1 [584 kB] 1211s Fetched 320 MB in 17s (18.9 MB/s) 1211s Selecting previously unselected package libgdk-pixbuf2.0-common. 1211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75470 files and directories currently installed.) 1211s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 1211s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 1211s Selecting previously unselected package libjpeg-turbo8:arm64. 1211s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 1211s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1212s Selecting previously unselected package libjpeg8:arm64. 1212s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 1212s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1212s Selecting previously unselected package libdeflate0:arm64. 1212s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 1212s Unpacking libdeflate0:arm64 (1.19-1) ... 1212s Selecting previously unselected package libjbig0:arm64. 1212s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 1212s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 1212s Selecting previously unselected package liblerc4:arm64. 1212s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 1212s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1212s Selecting previously unselected package libsharpyuv0:arm64. 1212s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 1212s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 1212s Selecting previously unselected package libwebp7:arm64. 1212s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 1212s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 1212s Selecting previously unselected package libtiff6:arm64. 1212s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 1212s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1212s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 1212s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 1212s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 1212s Selecting previously unselected package gtk-update-icon-cache. 1212s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 1212s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 1212s Selecting previously unselected package hicolor-icon-theme. 1212s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 1212s Unpacking hicolor-icon-theme (0.17-2) ... 1213s Selecting previously unselected package humanity-icon-theme. 1213s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 1213s Unpacking humanity-icon-theme (0.6.16) ... 1216s Selecting previously unselected package ubuntu-mono. 1217s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 1217s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 1218s Selecting previously unselected package adwaita-icon-theme. 1218s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 1218s Unpacking adwaita-icon-theme (46~rc-1) ... 1219s Selecting previously unselected package ca-certificates-java. 1219s Preparing to unpack .../015-ca-certificates-java_20240118_all.deb ... 1219s Unpacking ca-certificates-java (20240118) ... 1219s Selecting previously unselected package java-common. 1219s Preparing to unpack .../016-java-common_0.75+exp1_all.deb ... 1219s Unpacking java-common (0.75+exp1) ... 1219s Selecting previously unselected package libavahi-common-data:arm64. 1219s Preparing to unpack .../017-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 1219s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 1219s Selecting previously unselected package libavahi-common3:arm64. 1219s Preparing to unpack .../018-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 1219s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 1219s Selecting previously unselected package libavahi-client3:arm64. 1219s Preparing to unpack .../019-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 1219s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 1220s Selecting previously unselected package libcups2:arm64. 1220s Preparing to unpack .../020-libcups2_2.4.6-0ubuntu3_arm64.deb ... 1220s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 1220s Selecting previously unselected package liblcms2-2:arm64. 1220s Preparing to unpack .../021-liblcms2-2_2.14-2_arm64.deb ... 1220s Unpacking liblcms2-2:arm64 (2.14-2) ... 1220s Selecting previously unselected package fonts-dejavu-mono. 1220s Preparing to unpack .../022-fonts-dejavu-mono_2.37-8_all.deb ... 1220s Unpacking fonts-dejavu-mono (2.37-8) ... 1220s Selecting previously unselected package fonts-dejavu-core. 1220s Preparing to unpack .../023-fonts-dejavu-core_2.37-8_all.deb ... 1220s Unpacking fonts-dejavu-core (2.37-8) ... 1220s Selecting previously unselected package fontconfig-config. 1220s Preparing to unpack .../024-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 1221s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1221s Selecting previously unselected package libfontconfig1:arm64. 1221s Preparing to unpack .../025-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 1221s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1221s Selecting previously unselected package libasound2-data. 1221s Preparing to unpack .../026-libasound2-data_1.2.10-3build1_all.deb ... 1221s Unpacking libasound2-data (1.2.10-3build1) ... 1221s Selecting previously unselected package libasound2:arm64. 1221s Preparing to unpack .../027-libasound2_1.2.10-3build1_arm64.deb ... 1221s Unpacking libasound2:arm64 (1.2.10-3build1) ... 1221s Selecting previously unselected package libgraphite2-3:arm64. 1221s Preparing to unpack .../028-libgraphite2-3_1.3.14-2_arm64.deb ... 1221s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 1221s Selecting previously unselected package libharfbuzz0b:arm64. 1221s Preparing to unpack .../029-libharfbuzz0b_8.3.0-2_arm64.deb ... 1221s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 1221s Selecting previously unselected package libpcsclite1:arm64. 1221s Preparing to unpack .../030-libpcsclite1_2.0.0-1_arm64.deb ... 1221s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 1221s Selecting previously unselected package openjdk-21-jre-headless:arm64. 1221s Preparing to unpack .../031-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 1221s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 1226s Selecting previously unselected package default-jre-headless. 1226s Preparing to unpack .../032-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 1226s Unpacking default-jre-headless (2:1.21-75+exp1) ... 1226s Selecting previously unselected package ant. 1226s Preparing to unpack .../033-ant_1.10.14-1_all.deb ... 1226s Unpacking ant (1.10.14-1) ... 1226s Selecting previously unselected package ant-optional. 1226s Preparing to unpack .../034-ant-optional_1.10.14-1_all.deb ... 1226s Unpacking ant-optional (1.10.14-1) ... 1226s Selecting previously unselected package at-spi2-common. 1227s Preparing to unpack .../035-at-spi2-common_2.50.0-1_all.deb ... 1227s Unpacking at-spi2-common (2.50.0-1) ... 1227s Selecting previously unselected package libgtk2.0-common. 1227s Preparing to unpack .../036-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 1227s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 1227s Selecting previously unselected package libatk1.0-0:arm64. 1227s Preparing to unpack .../037-libatk1.0-0_2.50.0-1_arm64.deb ... 1227s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 1227s Selecting previously unselected package libpixman-1-0:arm64. 1227s Preparing to unpack .../038-libpixman-1-0_0.42.2-1_arm64.deb ... 1227s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 1227s Selecting previously unselected package libxcb-render0:arm64. 1227s Preparing to unpack .../039-libxcb-render0_1.15-1_arm64.deb ... 1227s Unpacking libxcb-render0:arm64 (1.15-1) ... 1227s Selecting previously unselected package libxcb-shm0:arm64. 1227s Preparing to unpack .../040-libxcb-shm0_1.15-1_arm64.deb ... 1227s Unpacking libxcb-shm0:arm64 (1.15-1) ... 1227s Selecting previously unselected package libxrender1:arm64. 1227s Preparing to unpack .../041-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 1227s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 1227s Selecting previously unselected package libcairo2:arm64. 1227s Preparing to unpack .../042-libcairo2_1.18.0-1_arm64.deb ... 1227s Unpacking libcairo2:arm64 (1.18.0-1) ... 1227s Selecting previously unselected package fontconfig. 1227s Preparing to unpack .../043-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 1227s Unpacking fontconfig (2.15.0-1ubuntu1) ... 1227s Selecting previously unselected package libthai-data. 1227s Preparing to unpack .../044-libthai-data_0.1.29-2_all.deb ... 1227s Unpacking libthai-data (0.1.29-2) ... 1228s Selecting previously unselected package libdatrie1:arm64. 1228s Preparing to unpack .../045-libdatrie1_0.2.13-3_arm64.deb ... 1228s Unpacking libdatrie1:arm64 (0.2.13-3) ... 1228s Selecting previously unselected package libthai0:arm64. 1228s Preparing to unpack .../046-libthai0_0.1.29-2_arm64.deb ... 1228s Unpacking libthai0:arm64 (0.1.29-2) ... 1228s Selecting previously unselected package libpango-1.0-0:arm64. 1228s Preparing to unpack .../047-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 1228s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1228s Selecting previously unselected package libpangoft2-1.0-0:arm64. 1228s Preparing to unpack .../048-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 1228s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 1228s Selecting previously unselected package libpangocairo-1.0-0:arm64. 1228s Preparing to unpack .../049-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 1228s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 1228s Selecting previously unselected package libxcomposite1:arm64. 1228s Preparing to unpack .../050-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 1228s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 1228s Selecting previously unselected package libxfixes3:arm64. 1228s Preparing to unpack .../051-libxfixes3_1%3a6.0.0-2_arm64.deb ... 1228s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 1228s Selecting previously unselected package libxcursor1:arm64. 1228s Preparing to unpack .../052-libxcursor1_1%3a1.2.1-1_arm64.deb ... 1228s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 1228s Selecting previously unselected package libxdamage1:arm64. 1228s Preparing to unpack .../053-libxdamage1_1%3a1.1.6-1_arm64.deb ... 1228s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 1228s Selecting previously unselected package libxi6:arm64. 1228s Preparing to unpack .../054-libxi6_2%3a1.8.1-1_arm64.deb ... 1228s Unpacking libxi6:arm64 (2:1.8.1-1) ... 1229s Selecting previously unselected package libxinerama1:arm64. 1229s Preparing to unpack .../055-libxinerama1_2%3a1.1.4-3_arm64.deb ... 1229s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 1229s Selecting previously unselected package libxrandr2:arm64. 1229s Preparing to unpack .../056-libxrandr2_2%3a1.5.2-2_arm64.deb ... 1229s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 1229s Selecting previously unselected package libgtk2.0-0:arm64. 1229s Preparing to unpack .../057-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 1229s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 1229s Selecting previously unselected package libglvnd0:arm64. 1229s Preparing to unpack .../058-libglvnd0_1.7.0-1_arm64.deb ... 1229s Unpacking libglvnd0:arm64 (1.7.0-1) ... 1229s Selecting previously unselected package libglapi-mesa:arm64. 1229s Preparing to unpack .../059-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 1229s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1229s Selecting previously unselected package libx11-xcb1:arm64. 1229s Preparing to unpack .../060-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 1229s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 1229s Selecting previously unselected package libxcb-dri2-0:arm64. 1229s Preparing to unpack .../061-libxcb-dri2-0_1.15-1_arm64.deb ... 1229s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 1229s Selecting previously unselected package libxcb-dri3-0:arm64. 1229s Preparing to unpack .../062-libxcb-dri3-0_1.15-1_arm64.deb ... 1229s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 1230s Selecting previously unselected package libxcb-glx0:arm64. 1230s Preparing to unpack .../063-libxcb-glx0_1.15-1_arm64.deb ... 1230s Unpacking libxcb-glx0:arm64 (1.15-1) ... 1230s Selecting previously unselected package libxcb-present0:arm64. 1230s Preparing to unpack .../064-libxcb-present0_1.15-1_arm64.deb ... 1230s Unpacking libxcb-present0:arm64 (1.15-1) ... 1230s Selecting previously unselected package libxcb-randr0:arm64. 1230s Preparing to unpack .../065-libxcb-randr0_1.15-1_arm64.deb ... 1230s Unpacking libxcb-randr0:arm64 (1.15-1) ... 1230s Selecting previously unselected package libxcb-sync1:arm64. 1230s Preparing to unpack .../066-libxcb-sync1_1.15-1_arm64.deb ... 1230s Unpacking libxcb-sync1:arm64 (1.15-1) ... 1230s Selecting previously unselected package libxcb-xfixes0:arm64. 1230s Preparing to unpack .../067-libxcb-xfixes0_1.15-1_arm64.deb ... 1230s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 1230s Selecting previously unselected package libxshmfence1:arm64. 1230s Preparing to unpack .../068-libxshmfence1_1.3-1build4_arm64.deb ... 1230s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 1230s Selecting previously unselected package libxxf86vm1:arm64. 1230s Preparing to unpack .../069-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 1230s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1230s Selecting previously unselected package libvulkan1:arm64. 1230s Preparing to unpack .../070-libvulkan1_1.3.275.0-1_arm64.deb ... 1230s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 1230s Selecting previously unselected package libdrm-amdgpu1:arm64. 1230s Preparing to unpack .../071-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 1230s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 1230s Selecting previously unselected package libdrm-nouveau2:arm64. 1230s Preparing to unpack .../072-libdrm-nouveau2_2.4.120-2_arm64.deb ... 1230s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 1230s Selecting previously unselected package libdrm-radeon1:arm64. 1231s Preparing to unpack .../073-libdrm-radeon1_2.4.120-2_arm64.deb ... 1231s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 1231s Selecting previously unselected package libllvm17:arm64. 1231s Preparing to unpack .../074-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 1231s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 1233s Selecting previously unselected package libgl1-mesa-dri:arm64. 1233s Preparing to unpack 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... 1234s Selecting previously unselected package libxtst6:arm64. 1234s Preparing to unpack .../081-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 1234s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 1234s Selecting previously unselected package openjdk-21-jre:arm64. 1234s Preparing to unpack .../082-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 1234s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 1235s Selecting previously unselected package default-jre. 1235s Preparing to unpack .../083-default-jre_2%3a1.21-75+exp1_arm64.deb ... 1235s Unpacking default-jre (2:1.21-75+exp1) ... 1235s Selecting previously unselected package drop-seq-testdata. 1235s Preparing to unpack .../084-drop-seq-testdata_2.5.4+dfsg-1_all.deb ... 1235s Unpacking drop-seq-testdata (2.5.4+dfsg-1) ... 1238s Selecting previously unselected package libapache-pom-java. 1238s Preparing to unpack .../085-libapache-pom-java_29-2_all.deb ... 1238s Unpacking libapache-pom-java (29-2) ... 1238s Selecting previously unselected package libcommons-parent-java. 1238s Preparing to unpack .../086-libcommons-parent-java_56-1_all.deb ... 1238s Unpacking libcommons-parent-java (56-1) ... 1238s Selecting previously unselected package libcommons-lang3-java. 1238s Preparing to unpack .../087-libcommons-lang3-java_3.14.0-1_all.deb ... 1238s Unpacking libcommons-lang3-java (3.14.0-1) ... 1238s Selecting previously unselected package libfreemarker-java. 1238s Preparing to unpack .../088-libfreemarker-java_2.3.32-2_all.deb ... 1238s Unpacking libfreemarker-java (2.3.32-2) ... 1238s Selecting previously unselected package libgoogle-gson-java. 1238s Preparing to unpack .../089-libgoogle-gson-java_2.10.1-1_all.deb ... 1238s Unpacking libgoogle-gson-java (2.10.1-1) ... 1238s Selecting previously unselected package libjoptsimple-java. 1238s Preparing to unpack .../090-libjoptsimple-java_5.0.4-4_all.deb ... 1238s Unpacking libjoptsimple-java (5.0.4-4) ... 1238s Selecting previously unselected package libcommons-codec-java. 1238s Preparing to unpack .../091-libcommons-codec-java_1.16.0-1_all.deb ... 1238s Unpacking libcommons-codec-java (1.16.0-1) ... 1238s Selecting previously unselected package libcommons-logging-java. 1238s Preparing to unpack .../092-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 1238s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 1238s Selecting previously unselected package libhttpcore-java. 1238s Preparing to unpack .../093-libhttpcore-java_4.4.16-1_all.deb ... 1238s Unpacking libhttpcore-java (4.4.16-1) ... 1239s Selecting previously unselected package libhttpclient-java. 1239s Preparing to unpack .../094-libhttpclient-java_4.5.14-1_all.deb ... 1239s Unpacking libhttpclient-java (4.5.14-1) ... 1239s Selecting previously unselected package liblightcouch-java. 1239s Preparing to unpack .../095-liblightcouch-java_0.2.0-1_all.deb ... 1239s Unpacking liblightcouch-java (0.2.0-1) ... 1239s Selecting previously unselected package libmongodb-java. 1239s Preparing to unpack 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... 1240s Unpacking libciftools-java (5.0.2-1) ... 1240s Selecting previously unselected package libcommons-math-java. 1240s Preparing to unpack .../102-libcommons-math-java_2.2-8_all.deb ... 1240s Unpacking libcommons-math-java (2.2-8) ... 1240s Selecting previously unselected package libatinject-jsr330-api-java. 1240s Preparing to unpack .../103-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... 1240s Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... 1240s Selecting previously unselected package liberror-prone-java. 1240s Preparing to unpack .../104-liberror-prone-java_2.18.0-1_all.deb ... 1240s Unpacking liberror-prone-java (2.18.0-1) ... 1240s Selecting previously unselected package libjsr305-java. 1240s Preparing to unpack .../105-libjsr305-java_0.1~+svn49-11_all.deb ... 1240s Unpacking libjsr305-java (0.1~+svn49-11) ... 1240s Selecting previously unselected package libguava-java. 1240s Preparing to unpack .../106-libguava-java_32.0.1-1_all.deb ... 1240s Unpacking libguava-java (32.0.1-1) ... 1240s Selecting previously unselected package libitext5-java. 1240s Preparing to unpack .../107-libitext5-java_5.5.13.3-4_all.deb ... 1240s Unpacking libitext5-java (5.5.13.3-4) ... 1241s Selecting previously unselected package libjackson2-annotations-java. 1241s Preparing to unpack .../108-libjackson2-annotations-java_2.14.0-1_all.deb ... 1241s Unpacking libjackson2-annotations-java (2.14.0-1) ... 1241s Selecting previously unselected package libjackson2-core-java. 1241s Preparing to unpack .../109-libjackson2-core-java_2.14.1-1_all.deb ... 1241s Unpacking libjackson2-core-java (2.14.1-1) ... 1241s Selecting previously unselected package libjackson2-databind-java. 1241s Preparing to unpack .../110-libjackson2-databind-java_2.14.0-1_all.deb ... 1241s Unpacking libjackson2-databind-java (2.14.0-1) ... 1241s Selecting previously unselected package libactivation-java. 1241s Preparing to unpack .../111-libactivation-java_1.2.0-2_all.deb ... 1241s Unpacking libactivation-java (1.2.0-2) ... 1241s Selecting previously unselected package libjaxb-api-java. 1241s Preparing to unpack .../112-libjaxb-api-java_2.3.1-1_all.deb ... 1241s Unpacking libjaxb-api-java (2.3.1-1) ... 1241s Selecting previously unselected package libargs4j-java. 1241s Preparing to unpack .../113-libargs4j-java_2.33-2_all.deb ... 1241s Unpacking libargs4j-java (2.33-2) ... 1241s Selecting previously unselected package libjaxen-java. 1241s Preparing to unpack .../114-libjaxen-java_1.1.6-4_all.deb ... 1241s Unpacking libjaxen-java (1.1.6-4) ... 1241s Selecting previously unselected package libdom4j-java. 1241s Preparing to unpack .../115-libdom4j-java_2.1.4-1_all.deb ... 1241s Unpacking libdom4j-java (2.1.4-1) ... 1242s Selecting previously unselected package libcommons-io-java. 1242s Preparing to unpack .../116-libcommons-io-java_2.11.0-2_all.deb ... 1242s Unpacking libcommons-io-java (2.11.0-2) ... 1242s Selecting previously unselected package libmaven-shared-utils-java. 1242s Preparing to unpack .../117-libmaven-shared-utils-java_3.3.4-1_all.deb ... 1242s Unpacking libmaven-shared-utils-java (3.3.4-1) ... 1242s Selecting previously unselected package libcommons-cli-java. 1242s Preparing to unpack .../118-libcommons-cli-java_1.6.0-1_all.deb ... 1242s Unpacking libcommons-cli-java (1.6.0-1) ... 1242s Selecting previously unselected package libaopalliance-java. 1242s Preparing to unpack .../119-libaopalliance-java_20070526-7_all.deb ... 1242s Unpacking libaopalliance-java (20070526-7) ... 1242s Selecting previously unselected package libguice-java. 1242s Preparing to unpack .../120-libguice-java_4.2.3-2_all.deb ... 1242s Unpacking libguice-java (4.2.3-2) ... 1242s Selecting previously unselected package libmaven-parent-java. 1242s Preparing to unpack .../121-libmaven-parent-java_35-1_all.deb ... 1242s Unpacking libmaven-parent-java (35-1) ... 1242s Selecting previously unselected package libplexus-utils2-java. 1242s Preparing to unpack .../122-libplexus-utils2-java_3.4.2-1_all.deb ... 1242s Unpacking libplexus-utils2-java (3.4.2-1) ... 1243s Selecting previously unselected package libwagon-provider-api-java. 1243s Preparing to unpack .../123-libwagon-provider-api-java_3.5.3-1_all.deb ... 1243s Unpacking libwagon-provider-api-java (3.5.3-1) ... 1243s Selecting previously unselected package libmaven-resolver-java. 1243s Preparing to unpack .../124-libmaven-resolver-java_1.6.3-1_all.deb ... 1243s Unpacking libmaven-resolver-java (1.6.3-1) ... 1243s Selecting previously unselected package libplexus-cipher-java. 1243s Preparing to unpack .../125-libplexus-cipher-java_2.0-1_all.deb ... 1243s Unpacking libplexus-cipher-java (2.0-1) ... 1243s Selecting previously unselected package libplexus-classworlds-java. 1243s Preparing to unpack .../126-libplexus-classworlds-java_2.7.0-1_all.deb ... 1243s Unpacking libplexus-classworlds-java (2.7.0-1) ... 1243s Selecting previously unselected package libplexus-component-annotations-java. 1243s Preparing to unpack .../127-libplexus-component-annotations-java_2.1.1-1_all.deb ... 1243s Unpacking libplexus-component-annotations-java (2.1.1-1) ... 1243s Selecting previously unselected package libplexus-interpolation-java. 1243s Preparing to unpack .../128-libplexus-interpolation-java_1.26-1_all.deb ... 1243s Unpacking libplexus-interpolation-java (1.26-1) ... 1243s Selecting previously unselected package libplexus-sec-dispatcher-java. 1243s Preparing to unpack .../129-libplexus-sec-dispatcher-java_2.0-3_all.deb ... 1243s Unpacking libplexus-sec-dispatcher-java (2.0-3) ... 1243s Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java. 1243s Preparing to unpack .../130-libgeronimo-interceptor-3.0-spec-java_1.0.1-4fakesync_all.deb ... 1243s Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 1243s Selecting previously unselected package libcdi-api-java. 1244s Preparing to unpack .../131-libcdi-api-java_1.2-3_all.deb ... 1244s Unpacking libcdi-api-java (1.2-3) ... 1244s Selecting previously unselected package libsisu-inject-java. 1244s Preparing to unpack .../132-libsisu-inject-java_0.3.4-2_all.deb ... 1244s Unpacking libsisu-inject-java (0.3.4-2) ... 1244s Selecting previously unselected package libsisu-plexus-java. 1244s Preparing to unpack .../133-libsisu-plexus-java_0.3.4-3_all.deb ... 1244s Unpacking libsisu-plexus-java (0.3.4-3) ... 1244s Selecting previously unselected package libmaven3-core-java. 1244s Preparing to unpack .../134-libmaven3-core-java_3.8.7-2_all.deb ... 1244s Unpacking libmaven3-core-java (3.8.7-2) ... 1244s Selecting previously unselected package libmaven-shared-io-java. 1244s Preparing to unpack .../135-libmaven-shared-io-java_3.0.0-4_all.deb ... 1244s Unpacking libmaven-shared-io-java (3.0.0-4) ... 1244s Selecting previously unselected package libmaven-file-management-java. 1244s Preparing to unpack .../136-libmaven-file-management-java_3.0.0-1_all.deb ... 1244s Unpacking libmaven-file-management-java (3.0.0-1) ... 1244s Selecting previously unselected package libcommons-compress-java. 1244s Preparing to unpack .../137-libcommons-compress-java_1.25.0-1_all.deb ... 1244s Unpacking libcommons-compress-java (1.25.0-1) ... 1244s Selecting previously unselected package libplexus-io-java. 1245s Preparing to unpack .../138-libplexus-io-java_3.3.1-2_all.deb ... 1245s Unpacking libplexus-io-java (3.3.1-2) ... 1245s Selecting previously unselected package libsnappy1v5:arm64. 1245s Preparing to unpack .../139-libsnappy1v5_1.1.10-1_arm64.deb ... 1245s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 1245s Selecting previously unselected package libsnappy-jni. 1245s Preparing to unpack .../140-libsnappy-jni_1.1.10.5-1_arm64.deb ... 1245s Unpacking libsnappy-jni (1.1.10.5-1) ... 1245s Selecting previously unselected package libsnappy-java. 1245s Preparing to unpack .../141-libsnappy-java_1.1.10.5-1_all.deb ... 1245s Unpacking libsnappy-java (1.1.10.5-1) ... 1245s Selecting previously unselected package libxz-java. 1245s Preparing to unpack .../142-libxz-java_1.9-1_all.deb ... 1245s Unpacking libxz-java (1.9-1) ... 1245s Selecting previously unselected package libplexus-archiver-java. 1245s Preparing to unpack .../143-libplexus-archiver-java_4.6.1-1_all.deb ... 1245s Unpacking libplexus-archiver-java (4.6.1-1) ... 1245s Selecting previously unselected package libjsoup-java. 1245s Preparing to unpack .../144-libjsoup-java_1.15.3-1_all.deb ... 1245s Unpacking libjsoup-java (1.15.3-1) ... 1245s Selecting previously unselected package libwagon-http-java. 1245s Preparing to unpack .../145-libwagon-http-java_3.5.3-1_all.deb ... 1245s Unpacking libwagon-http-java (3.5.3-1) ... 1245s Selecting previously unselected package libistack-commons-java. 1245s Preparing to unpack .../146-libistack-commons-java_3.0.6-5_all.deb ... 1245s Unpacking libistack-commons-java (3.0.6-5) ... 1245s Selecting previously unselected package libcodemodel-java. 1246s Preparing to unpack .../147-libcodemodel-java_2.6+jaxb2.3.0.1-10.1_all.deb ... 1246s Unpacking libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 1246s Selecting previously unselected package librelaxng-datatype-java. 1246s Preparing to unpack .../148-librelaxng-datatype-java_1.0+ds1-3.1_all.deb ... 1246s Unpacking librelaxng-datatype-java (1.0+ds1-3.1) ... 1246s Selecting previously unselected package librngom-java. 1246s Preparing to unpack .../149-librngom-java_2.3.0.1-10.1_all.deb ... 1246s Unpacking librngom-java (2.3.0.1-10.1) ... 1246s Selecting previously unselected package libxsom-java. 1246s Preparing to unpack .../150-libxsom-java_2.3.0.1-10.1_all.deb ... 1246s Unpacking libxsom-java (2.3.0.1-10.1) ... 1246s Selecting previously unselected package libtxw2-java. 1246s Preparing to unpack .../151-libtxw2-java_2.3.0.1-10.1_all.deb ... 1246s Unpacking libtxw2-java (2.3.0.1-10.1) ... 1246s Selecting previously unselected package libxml-commons-resolver1.1-java. 1246s Preparing to unpack .../152-libxml-commons-resolver1.1-java_1.2-11_all.deb ... 1246s Unpacking libxml-commons-resolver1.1-java (1.2-11) ... 1246s Selecting previously unselected package libdtd-parser-java. 1246s Preparing to unpack .../153-libdtd-parser-java_1.2-1_all.deb ... 1246s Unpacking libdtd-parser-java (1.2-1) ... 1246s Selecting previously unselected package libstax-ex-java. 1246s Preparing to unpack .../154-libstax-ex-java_1.7.8-3_all.deb ... 1246s Unpacking libstax-ex-java (1.7.8-3) ... 1246s Selecting previously unselected package libstreambuffer-java. 1246s Preparing to unpack .../155-libstreambuffer-java_1.5.4-1.1_all.deb ... 1246s Unpacking libstreambuffer-java (1.5.4-1.1) ... 1246s Selecting previously unselected package libfastinfoset-java. 1246s Preparing to unpack .../156-libfastinfoset-java_1.2.12-3_all.deb ... 1246s Unpacking libfastinfoset-java (1.2.12-3) ... 1247s Selecting previously unselected package libjaxb-java. 1247s Preparing to unpack .../157-libjaxb-java_2.3.0.1-10.1_all.deb ... 1247s Unpacking libjaxb-java (2.3.0.1-10.1) ... 1247s Selecting previously unselected package libantlr4-runtime-java. 1247s Preparing to unpack .../158-libantlr4-runtime-java_4.9.2-2_all.deb ... 1247s Unpacking libantlr4-runtime-java (4.9.2-2) ... 1247s Selecting previously unselected package libapfloat-java. 1247s Preparing to unpack .../159-libapfloat-java_1.13.0-1_all.deb ... 1247s Unpacking libapfloat-java (1.13.0-1) ... 1247s Selecting previously unselected package libmaven-archiver-java. 1247s Preparing to unpack .../160-libmaven-archiver-java_3.6.0-1_all.deb ... 1247s Unpacking libmaven-archiver-java (3.6.0-1) ... 1247s Selecting previously unselected package libmaven-jar-plugin-java. 1247s Preparing to unpack .../161-libmaven-jar-plugin-java_3.3.0-2_all.deb ... 1247s Unpacking libmaven-jar-plugin-java (3.3.0-2) ... 1247s Selecting previously unselected package libcommons-text-java. 1247s Preparing to unpack .../162-libcommons-text-java_1.11.0-1_all.deb ... 1247s Unpacking libcommons-text-java (1.11.0-1) ... 1247s Selecting previously unselected package libfastutil-java. 1247s Preparing to unpack .../163-libfastutil-java_8.5.12+dfsg-1_all.deb ... 1247s Unpacking libfastutil-java (8.5.12+dfsg-1) ... 1248s Selecting previously unselected package libjheaps-java. 1248s Preparing to unpack .../164-libjheaps-java_0.14-2_all.deb ... 1248s Unpacking libjheaps-java (0.14-2) ... 1248s Selecting previously unselected package libxml-commons-external-java. 1248s Preparing to unpack .../165-libxml-commons-external-java_1.4.01-6_all.deb ... 1248s Unpacking libxml-commons-external-java (1.4.01-6) ... 1248s Selecting previously unselected package libxerces2-java. 1248s Preparing to unpack .../166-libxerces2-java_2.12.2-1_all.deb ... 1248s Unpacking libxerces2-java (2.12.2-1) ... 1248s Selecting previously unselected package libjgraphx-java. 1248s Preparing to unpack .../167-libjgraphx-java_2.1.0.7-3_all.deb ... 1248s Unpacking libjgraphx-java (2.1.0.7-3) ... 1248s Selecting previously unselected package libjgrapht-java. 1248s Preparing to unpack .../168-libjgrapht-java_1.5.2-1_all.deb ... 1248s Unpacking libjgrapht-java (1.5.2-1) ... 1249s Selecting previously unselected package libinchi1. 1249s Preparing to unpack .../169-libinchi1_1.03+dfsg-4_arm64.deb ... 1249s Unpacking libinchi1 (1.03+dfsg-4) ... 1249s Selecting previously unselected package libjni-inchi-jni. 1249s Preparing to unpack .../170-libjni-inchi-jni_0.8+dfsg-7_arm64.deb ... 1249s Unpacking libjni-inchi-jni (0.8+dfsg-7) ... 1249s Selecting previously unselected package libcommons-exec-java. 1249s Preparing to unpack .../171-libcommons-exec-java_1.3-2_all.deb ... 1249s Unpacking libcommons-exec-java (1.3-2) ... 1249s Selecting previously unselected package libexec-maven-plugin-java. 1249s Preparing to unpack .../172-libexec-maven-plugin-java_3.1.0-2_all.deb ... 1249s Unpacking libexec-maven-plugin-java (3.1.0-2) ... 1249s Selecting previously unselected package libmaven-shared-incremental-java. 1249s Preparing to unpack .../173-libmaven-shared-incremental-java_1.1-4_all.deb ... 1249s Unpacking libmaven-shared-incremental-java (1.1-4) ... 1249s Selecting previously unselected package libcommons-lang-java. 1249s Preparing to unpack .../174-libcommons-lang-java_2.6-10_all.deb ... 1249s Unpacking libcommons-lang-java (2.6-10) ... 1249s Selecting previously unselected package libxbean-reflect-java. 1249s Preparing to unpack .../175-libxbean-reflect-java_4.5-8_all.deb ... 1249s Unpacking libxbean-reflect-java (4.5-8) ... 1249s Selecting previously unselected package libplexus-container-default-java. 1249s Preparing to unpack .../176-libplexus-container-default-java_2.1.1-1_all.deb ... 1249s Unpacking libplexus-container-default-java (2.1.1-1) ... 1249s Selecting previously unselected package libplexus-compiler-java. 1249s Preparing to unpack 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libmsgpack-java (0.9.6-1) ... 1251s Selecting previously unselected package libmmtf-java. 1251s Preparing to unpack .../188-libmmtf-java_1.0.11-1_all.deb ... 1251s Unpacking libmmtf-java (1.0.11-1) ... 1251s Selecting previously unselected package libvecmath-java. 1251s Preparing to unpack .../189-libvecmath-java_1.5.2-7_all.deb ... 1251s Unpacking libvecmath-java (1.5.2-7) ... 1251s Selecting previously unselected package libbiojava6-java. 1251s Preparing to unpack .../190-libbiojava6-java_6.1.0+dfsg-4_all.deb ... 1251s Unpacking libbiojava6-java (6.1.0+dfsg-4) ... 1252s Selecting previously unselected package libcommons-collections4-java. 1252s Preparing to unpack .../191-libcommons-collections4-java_4.4-2_all.deb ... 1252s Unpacking libcommons-collections4-java (4.4-2) ... 1252s Selecting previously unselected package libcommons-math3-java. 1252s Preparing to unpack .../192-libcommons-math3-java_3.6.1-3_all.deb ... 1252s Unpacking libcommons-math3-java (3.6.1-3) ... 1252s Selecting previously unselected package libcommons-jexl2-java. 1252s Preparing to unpack .../193-libcommons-jexl2-java_2.1.1-6_all.deb ... 1252s Unpacking libcommons-jexl2-java (2.1.1-6) ... 1252s Selecting previously unselected package libmjson-java. 1252s Preparing to unpack .../194-libmjson-java_1.4.0-3_all.deb ... 1252s Unpacking libmjson-java (1.4.0-3) ... 1252s Selecting previously unselected package libmbedcrypto7:arm64. 1252s Preparing to unpack .../195-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 1252s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 1252s Selecting previously unselected package libmbedx509-1:arm64. 1252s Preparing to unpack .../196-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 1252s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 1252s Selecting previously unselected package libmbedtls14:arm64. 1252s Preparing to unpack .../197-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 1252s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 1252s Selecting previously unselected package ncbi-vdb-data. 1252s Preparing to unpack .../198-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 1252s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 1253s Selecting previously unselected package libncbi-vdb3:arm64. 1253s Preparing to unpack .../199-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 1253s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 1253s Selecting previously unselected package libncbi-ngs3:arm64. 1253s Preparing to unpack .../200-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1253s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 1253s Selecting previously unselected package libngs-jni:arm64. 1253s Preparing to unpack .../201-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1253s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 1253s Selecting previously unselected package libngs-java:arm64. 1253s Preparing to unpack .../202-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1253s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 1253s Selecting previously unselected package librhino-java. 1253s Preparing to unpack .../203-librhino-java_1.7.14-2.1_all.deb ... 1253s Unpacking librhino-java (1.7.14-2.1) ... 1253s Selecting previously unselected package libhtsjdk-java. 1253s Preparing to unpack .../204-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 1253s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 1253s Selecting previously unselected package libla4j-java. 1253s Preparing to unpack .../205-libla4j-java_0.6.0-4_all.deb ... 1253s Unpacking libla4j-java (0.6.0-4) ... 1253s Selecting previously unselected package libgatk-native-bindings-java. 1253s Preparing to unpack .../206-libgatk-native-bindings-java_1.0.0+dfsg-2_all.deb ... 1253s Unpacking libgatk-native-bindings-java (1.0.0+dfsg-2) ... 1253s Selecting previously unselected package libgkl-java. 1254s Preparing to unpack .../207-libgkl-java_0.8.11+dfsg-2_all.deb ... 1254s Unpacking libgkl-java (0.8.11+dfsg-2) ... 1254s Selecting previously unselected package libpicard-java. 1254s Preparing to unpack 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previously unselected package libhtscodecs2:arm64. 1254s Preparing to unpack .../214-libhtscodecs2_1.6.0-1_arm64.deb ... 1254s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 1254s Selecting previously unselected package libhts3:arm64. 1254s Preparing to unpack .../215-libhts3_1.18+ds-1_arm64.deb ... 1254s Unpacking libhts3:arm64 (1.18+ds-1) ... 1255s Selecting previously unselected package samtools. 1255s Preparing to unpack .../216-samtools_1.19.2-1_arm64.deb ... 1255s Unpacking samtools (1.19.2-1) ... 1255s Selecting previously unselected package autopkgtest-satdep. 1255s Preparing to unpack .../217-3-autopkgtest-satdep.deb ... 1255s Unpacking autopkgtest-satdep (0) ... 1255s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 1255s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 1255s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 1255s Setting up liblcms2-2:arm64 (2.14-2) ... 1255s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 1255s Setting up libfastutil-java (8.5.12+dfsg-1) ... 1255s Setting up libjackson2-annotations-java (2.14.0-1) ... 1255s Setting up libdtd-parser-java (1.2-1) ... 1255s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 1255s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 1255s Setting up libslf4j-java (1.7.32-1) ... 1255s Setting up libplexus-utils2-java (3.4.2-1) ... 1255s Setting up libplexus-classworlds-java (2.7.0-1) ... 1255s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 1255s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 1255s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 1255s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1255s Setting up libjsr305-java (0.1~+svn49-11) ... 1255s Setting up hicolor-icon-theme (0.17-2) ... 1255s Setting up libxi6:arm64 (2:1.8.1-1) ... 1255s Setting up libgatk-native-bindings-java (1.0.0+dfsg-2) ... 1255s Setting up java-common (0.75+exp1) ... 1255s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 1255s Setting up libdatrie1:arm64 (0.2.13-3) ... 1255s Setting up libqdox2-java (2.0.3-1) ... 1255s Setting up libla4j-java (0.6.0-4) ... 1255s Setting up libaopalliance-java (20070526-7) ... 1255s Setting up libcommons-cli-java (1.6.0-1) ... 1255s Setting up libjheaps-java (0.14-2) ... 1255s Setting up libcommons-exec-java (1.3-2) ... 1255s Setting up libvecmath-java (1.5.2-7) ... 1255s Setting up libxcb-render0:arm64 (1.15-1) ... 1255s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 1255s Setting up libglvnd0:arm64 (1.7.0-1) ... 1255s Setting up libgoogle-gson-java (2.10.1-1) ... 1255s Setting up libmjson-java (1.4.0-3) ... 1255s Setting up libxcb-glx0:arm64 (1.15-1) ... 1255s Setting up unzip (6.0-28ubuntu3) ... 1255s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 1255s Setting up libasm-java (9.6~us1-0ubuntu1) ... 1255s Setting up x11-common (1:7.7+23ubuntu2) ... 1257s Setting up libdeflate0:arm64 (1.19-1) ... 1257s Setting up liblog4j1.2-java (1.2.17-11) ... 1257s Setting up libplexus-component-annotations-java (2.1.1-1) ... 1257s Setting up libantlr4-runtime-java (4.9.2-2) ... 1257s Setting up libxcb-shm0:arm64 (1.15-1) ... 1257s Setting up libjson-simple-java (2.3.0-1) ... 1257s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 1257s Setting up drop-seq-testdata (2.5.4+dfsg-1) ... 1257s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1257s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 1257s Setting up libexec-maven-plugin-java (3.1.0-2) ... 1257s Setting up libxcb-present0:arm64 (1.15-1) ... 1257s Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... 1257s Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 1257s Setting up libasound2-data (1.2.10-3build1) ... 1257s Setting up librhino-java (1.7.14-2.1) ... 1257s Setting up libjaxen-java (1.1.6-4) ... 1257s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 1257s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 1257s Setting up libxcb-sync1:arm64 (1.15-1) ... 1257s Setting up libapache-pom-java (29-2) ... 1257s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 1257s Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... 1257s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 1257s Setting up libplexus-interpolation-java (1.26-1) ... 1257s Setting up fonts-dejavu-mono (2.37-8) ... 1257s Setting up libitext5-java (5.5.13.3-4) ... 1257s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 1257s Setting up libxz-java (1.9-1) ... 1257s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 1257s Setting up fonts-dejavu-core (2.37-8) ... 1257s Setting up libpcsclite1:arm64 (2.0.0-1) ... 1257s Setting up libmongodb-java (3.6.3-2) ... 1257s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1257s Setting up libactivation-java (1.2.0-2) ... 1257s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1257s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 1257s Setting up libapfloat-java (1.13.0-1) ... 1257s Setting up libwebp7:arm64 (1.3.2-0.4) ... 1257s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 1257s Setting up libgif7:arm64 (5.2.1-2.5) ... 1257s Setting up libfreemarker-java (2.3.32-2) ... 1257s Setting up libxshmfence1:arm64 (1.3-1build4) ... 1257s Setting up libjsoup-java (1.15.3-1) ... 1257s Setting up at-spi2-common (2.50.0-1) ... 1257s Setting up libcommons-math-java (2.2-8) ... 1257s Setting up libxcb-randr0:arm64 (1.15-1) ... 1257s Setting up libxml-commons-external-java (1.4.01-6) ... 1257s Setting up libxbean-reflect-java (4.5-8) ... 1257s Setting up libasound2:arm64 (1.2.10-3build1) ... 1257s Setting up libjackson2-core-java (2.14.1-1) ... 1257s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 1257s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 1257s Setting up libthai-data (0.1.29-2) ... 1257s Setting up libcommons-math3-java (3.6.1-3) ... 1257s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 1257s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 1257s Setting up libhttpcore-java (4.4.16-1) ... 1257s Setting up libjoptsimple-java (5.0.4-4) ... 1257s Setting up ca-certificates-java (20240118) ... 1257s No JRE found. Skipping Java certificates setup. 1257s Setting up libxerces2-java (2.12.2-1) ... 1257s Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... 1257s Setting up libyaml-snake-java (1.33-2) ... 1257s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 1257s Setting up libcdi-api-java (1.2-3) ... 1257s Setting up libsnappy-jni (1.1.10.5-1) ... 1257s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 1257s Setting up libargs4j-java (2.33-2) ... 1257s Setting up libinchi1 (1.03+dfsg-4) ... 1257s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 1257s Setting up libnaga-java (3.0+svn80-5) ... 1257s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 1257s Setting up libdom4j-java (2.1.4-1) ... 1257s Setting up libjaxb-api-java (2.3.1-1) ... 1257s Setting up libwagon-provider-api-java (3.5.3-1) ... 1257s Setting up libhts3:arm64 (1.18+ds-1) ... 1257s Setting up java-wrappers (0.4) ... 1257s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 1257s Setting up libplexus-languages-java (1.1.1-2) ... 1257s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 1257s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 1258s Setting up libstax-ex-java (1.7.8-3) ... 1258s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 1258s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 1258s Setting up libmaven-parent-java (35-1) ... 1258s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1258s Setting up libcommons-parent-java (56-1) ... 1258s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 1258s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 1258s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 1258s Setting up libsisu-inject-java (0.3.4-2) ... 1258s Setting up libciftools-java (5.0.2-1) ... 1258s Setting up libcommons-lang-java (2.6-10) ... 1258s Setting up libjackson2-databind-java (2.14.0-1) ... 1258s Setting up libplexus-cipher-java (2.0-1) ... 1258s Setting up samtools (1.19.2-1) ... 1258s Setting up libcommons-jexl2-java (2.1.1-6) ... 1258s Setting up libthai0:arm64 (0.1.29-2) ... 1258s Setting up libsisu-plexus-java (0.3.4-3) ... 1258s Setting up libstreambuffer-java (1.5.4-1.1) ... 1258s Setting up libcommons-collections4-java (4.4-2) ... 1258s Setting up libcommons-lang3-java (3.14.0-1) ... 1258s Setting up librngom-java (2.3.0.1-10.1) ... 1258s Setting up libjni-inchi-jni (0.8+dfsg-7) ... 1258s Setting up libjgraphx-java (2.1.0.7-3) ... 1258s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1258s Setting up libplexus-sec-dispatcher-java (2.0-3) ... 1258s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 1258s Setting up libsnappy-java (1.1.10.5-1) ... 1258s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1258s Setting up libxsom-java (2.3.0.1-10.1) ... 1258s Setting up libcommons-codec-java (1.16.0-1) ... 1258s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 1258s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 1258s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 1258s Setting up fontconfig (2.15.0-1ubuntu1) ... 1260s Regenerating fonts cache... done. 1260s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 1260s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1260s Setting up libglx0:arm64 (1.7.0-1) ... 1260s Setting up libcommons-compress-java (1.25.0-1) ... 1260s Setting up libcommons-io-java (2.11.0-2) ... 1260s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1260s Setting up libcairo2:arm64 (1.18.0-1) ... 1260s Setting up libmaven-resolver-java (1.6.3-1) ... 1260s Setting up libgl1:arm64 (1.7.0-1) ... 1260s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 1260s Setting up libhttpclient-java (4.5.14-1) ... 1260s Setting up liblightcouch-java (0.2.0-1) ... 1260s Setting up libwagon-http-java (3.5.3-1) ... 1260s Setting up libmaven-shared-utils-java (3.3.4-1) ... 1260s Setting up libfastinfoset-java (1.2.12-3) ... 1260s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 1260s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 1260s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 1260s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 1260s Setting up libplexus-io-java (3.3.1-2) ... 1260s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 1260s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 1260s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 1260s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 1260s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 1260s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 1260s Setting up liblog4j2-java (2.19.0-2) ... 1260s Setting up libplexus-archiver-java (4.6.1-1) ... 1260s Setting up libbarclay-java (5.0.0+dfsg-1) ... 1260s Setting up libgkl-java (0.8.11+dfsg-2) ... 1260s Setting up libmaven-archiver-java (3.6.0-1) ... 1260s Setting up libpicard-java (3.1.1+dfsg-1) ... 1260s Setting up adwaita-icon-theme (46~rc-1) ... 1260s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 1260s Setting up liberror-prone-java (2.18.0-1) ... 1260s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 1260s Setting up humanity-icon-theme (0.6.16) ... 1261s Setting up libguava-java (32.0.1-1) ... 1261s Setting up libplexus-container-default-java (2.1.1-1) ... 1261s Setting up ubuntu-mono (24.04-0ubuntu1) ... 1261s Setting up libguice-java (4.2.3-2) ... 1261s Setting up libmaven3-core-java (3.8.7-2) ... 1261s Setting up libmaven-shared-incremental-java (1.1-4) ... 1261s Setting up libmaven-shared-io-java (3.0.0-4) ... 1261s Setting up libplexus-compiler-java (2.12.1-2) ... 1261s Setting up libmaven-compiler-plugin-java (3.10.1-2) ... 1261s Setting up libjni-inchi-java (0.8+dfsg-7) ... 1261s Setting up libmaven-file-management-java (3.0.0-1) ... 1261s Setting up libjmol-java (14.32.83+dfsg-3) ... 1261s Setting up libmaven-jar-plugin-java (3.3.0-2) ... 1261s Setting up libcommons-text-java (1.11.0-1) ... 1261s Setting up libmsgpack-java (0.9.6-1) ... 1261s Setting up libmmtf-java (1.0.11-1) ... 1261s Setting up libjgrapht-java (1.5.2-1) ... 1261s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1261s Processing triggers for man-db (2.12.0-3) ... 1263s Processing triggers for ca-certificates-java (20240118) ... 1265s Adding debian:ACCVRAIZ1.pem 1265s Adding debian:AC_RAIZ_FNMT-RCM.pem 1265s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 1265s Adding debian:ANF_Secure_Server_Root_CA.pem 1265s Adding debian:Actalis_Authentication_Root_CA.pem 1265s Adding debian:AffirmTrust_Commercial.pem 1265s Adding debian:AffirmTrust_Networking.pem 1265s Adding debian:AffirmTrust_Premium.pem 1265s Adding debian:AffirmTrust_Premium_ECC.pem 1265s Adding debian:Amazon_Root_CA_1.pem 1265s Adding debian:Amazon_Root_CA_2.pem 1265s Adding debian:Amazon_Root_CA_3.pem 1265s Adding debian:Amazon_Root_CA_4.pem 1265s Adding debian:Atos_TrustedRoot_2011.pem 1265s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 1265s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 1265s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 1265s Adding debian:BJCA_Global_Root_CA1.pem 1265s Adding debian:BJCA_Global_Root_CA2.pem 1265s Adding debian:Baltimore_CyberTrust_Root.pem 1265s Adding debian:Buypass_Class_2_Root_CA.pem 1265s Adding debian:Buypass_Class_3_Root_CA.pem 1265s Adding debian:CA_Disig_Root_R2.pem 1265s Adding debian:CFCA_EV_ROOT.pem 1265s Adding debian:COMODO_Certification_Authority.pem 1265s Adding debian:COMODO_ECC_Certification_Authority.pem 1265s Adding debian:COMODO_RSA_Certification_Authority.pem 1265s Adding debian:Certainly_Root_E1.pem 1265s Adding debian:Certainly_Root_R1.pem 1265s Adding debian:Certigna.pem 1265s Adding debian:Certigna_Root_CA.pem 1265s Adding debian:Certum_EC-384_CA.pem 1265s Adding debian:Certum_Trusted_Network_CA.pem 1265s Adding debian:Certum_Trusted_Network_CA_2.pem 1265s Adding debian:Certum_Trusted_Root_CA.pem 1265s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 1265s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 1265s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 1265s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 1265s Adding debian:Comodo_AAA_Services_root.pem 1265s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 1265s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 1265s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 1265s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 1265s Adding debian:DigiCert_Assured_ID_Root_CA.pem 1265s Adding debian:DigiCert_Assured_ID_Root_G2.pem 1265s Adding debian:DigiCert_Assured_ID_Root_G3.pem 1265s Adding debian:DigiCert_Global_Root_CA.pem 1265s Adding debian:DigiCert_Global_Root_G2.pem 1265s Adding debian:DigiCert_Global_Root_G3.pem 1265s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 1265s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 1265s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 1265s Adding debian:DigiCert_Trusted_Root_G4.pem 1265s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 1265s Adding debian:Entrust_Root_Certification_Authority.pem 1265s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 1265s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 1265s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 1265s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 1265s Adding debian:GLOBALTRUST_2020.pem 1265s Adding debian:GTS_Root_R1.pem 1265s Adding debian:GTS_Root_R2.pem 1265s Adding debian:GTS_Root_R3.pem 1265s Adding debian:GTS_Root_R4.pem 1266s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 1266s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 1266s Adding debian:GlobalSign_Root_CA.pem 1266s Adding debian:GlobalSign_Root_CA_-_R3.pem 1266s Adding debian:GlobalSign_Root_CA_-_R6.pem 1266s Adding debian:GlobalSign_Root_E46.pem 1266s Adding debian:GlobalSign_Root_R46.pem 1266s Adding debian:Go_Daddy_Class_2_CA.pem 1266s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 1266s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 1266s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 1266s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 1266s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 1266s Adding debian:HiPKI_Root_CA_-_G1.pem 1266s Adding debian:Hongkong_Post_Root_CA_3.pem 1266s Adding debian:ISRG_Root_X1.pem 1266s Adding debian:ISRG_Root_X2.pem 1266s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 1266s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 1266s Adding debian:Izenpe.com.pem 1266s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 1266s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 1266s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 1266s Adding debian:NAVER_Global_Root_Certification_Authority.pem 1266s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 1266s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 1266s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 1266s Adding debian:QuoVadis_Root_CA_1_G3.pem 1266s Adding debian:QuoVadis_Root_CA_2.pem 1266s Adding debian:QuoVadis_Root_CA_2_G3.pem 1266s Adding debian:QuoVadis_Root_CA_3.pem 1266s Adding debian:QuoVadis_Root_CA_3_G3.pem 1266s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 1266s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 1266s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 1266s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 1266s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 1266s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 1266s Adding debian:SZAFIR_ROOT_CA2.pem 1266s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 1266s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 1266s Adding debian:SecureSign_RootCA11.pem 1266s Adding debian:SecureTrust_CA.pem 1266s Adding debian:Secure_Global_CA.pem 1266s Adding debian:Security_Communication_ECC_RootCA1.pem 1266s Adding debian:Security_Communication_RootCA2.pem 1266s Adding debian:Security_Communication_RootCA3.pem 1266s Adding debian:Security_Communication_Root_CA.pem 1266s Adding debian:Starfield_Class_2_CA.pem 1266s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 1266s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 1266s Adding debian:SwissSign_Gold_CA_-_G2.pem 1266s Adding debian:SwissSign_Silver_CA_-_G2.pem 1266s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 1266s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 1266s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 1266s Adding debian:TWCA_Global_Root_CA.pem 1266s Adding debian:TWCA_Root_Certification_Authority.pem 1266s Adding debian:TeliaSonera_Root_CA_v1.pem 1266s Adding debian:Telia_Root_CA_v2.pem 1266s Adding debian:TrustAsia_Global_Root_CA_G3.pem 1266s Adding debian:TrustAsia_Global_Root_CA_G4.pem 1266s Adding debian:Trustwave_Global_Certification_Authority.pem 1267s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 1267s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 1267s Adding debian:TunTrust_Root_CA.pem 1267s Adding debian:UCA_Extended_Validation_Root.pem 1267s Adding debian:UCA_Global_G2_Root.pem 1267s Adding debian:USERTrust_ECC_Certification_Authority.pem 1267s Adding debian:USERTrust_RSA_Certification_Authority.pem 1267s Adding debian:XRamp_Global_CA_Root.pem 1267s Adding debian:certSIGN_ROOT_CA.pem 1267s Adding debian:certSIGN_Root_CA_G2.pem 1267s Adding debian:e-Szigno_Root_CA_2017.pem 1267s Adding debian:ePKI_Root_Certification_Authority.pem 1267s Adding debian:emSign_ECC_Root_CA_-_C3.pem 1267s Adding debian:emSign_ECC_Root_CA_-_G3.pem 1267s Adding debian:emSign_Root_CA_-_C1.pem 1267s Adding debian:emSign_Root_CA_-_G1.pem 1267s Adding debian:vTrus_ECC_Root_CA.pem 1267s Adding debian:vTrus_Root_CA.pem 1267s done. 1267s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 1267s Setting up ant (1.10.14-1) ... 1267s Setting up default-jre-headless (2:1.21-75+exp1) ... 1267s Setting up default-jre (2:1.21-75+exp1) ... 1267s Setting up picard-tools (3.1.1+dfsg-1) ... 1267s Setting up ant-optional (1.10.14-1) ... 1267s Setting up libistack-commons-java (3.0.6-5) ... 1267s Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 1267s Setting up libtxw2-java (2.3.0.1-10.1) ... 1267s Setting up libjaxb-java (2.3.0.1-10.1) ... 1267s Setting up libbiojava6-java (6.1.0+dfsg-4) ... 1267s Setting up drop-seq-tools (2.5.4+dfsg-1) ... 1267s Setting up autopkgtest-satdep (0) ... 1286s (Reading database ... 93162 files and directories currently installed.) 1286s Removing autopkgtest-satdep (0) ... 1293s autopkgtest [18:43:49]: test drop-seq-run-unit-test: [----------------------- 1295s Test 1 1295s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 1300s INFO 2024-03-24 18:43:56 TagBamWithReadSequenceExtended 1300s 1300s ********** NOTE: Picard's command line syntax is changing. 1300s ********** 1300s ********** For more information, please see: 1300s ********** 1300s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 1300s ********** 1300s ********** The command line looks like this in the new syntax: 1300s ********** 1300s ********** TagBamWithReadSequenceExtended -INPUT org/broadinstitute/dropseq/annotation/test.bam -OUTPUT out/TagBamWithReadSequenceExtended-cellular.bam -SUMMARY TagBamWithReadSequenceExtended-cellular.bam_summary.txt -BASE_RANGE 1-12 -BASE_QUALITY 10 -BARCODED_READ 1 -DISCARD_READ false -TAG_NAME XC -NUM_BASES_BELOW_QUALITY 1 1300s ********** 1300s 1300s 1300s 18:43:56.607 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1300s 18:43:56.613 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1300s 18:43:56.615 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1300s 18:43:56.623 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1300s 18:43:56.624 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1300s 18:43:56.626 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1300s [Sun Mar 24 18:43:56 UTC 2024] TagBamWithReadSequenceExtended INPUT=org/broadinstitute/dropseq/annotation/test.bam OUTPUT=out/TagBamWithReadSequenceExtended-cellular.bam SUMMARY=TagBamWithReadSequenceExtended-cellular.bam_summary.txt BASE_RANGE=1-12 BARCODED_READ=1 DISCARD_READ=false BASE_QUALITY=10 NUM_BASES_BELOW_QUALITY=1 TAG_NAME=XC TAG_BARCODED_READ=false HARD_CLIP_BASES=false TAG_QUALITY=XQ VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 1300s [Sun Mar 24 18:43:56 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 1300s 18:43:56.690 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 1300s 18:43:56.712 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 1300s INFO 2024-03-24 18:43:56 CustomBAMIterators Input SAM/BAM not in queryname order, sorting... 1300s INFO 2024-03-24 18:43:56 CustomBAMIterators Reading in records for query name sorting 1300s INFO 2024-03-24 18:43:56 CustomBAMIterators Sorting finished. 1300s 18:43:56.965 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 1301s INFO 2024-03-24 18:43:57 TagBamWithReadSequenceExtended Total of 0 reads processed. 1301s [Sun Mar 24 18:43:57 UTC 2024] org.broadinstitute.dropseqrna.utils.TagBamWithReadSequenceExtended done. Elapsed time: 0.01 minutes. 1301s Runtime.totalMemory()=129761280 1301s Passed 1301s 1301s Test 2 1301s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 1306s INFO 2024-03-24 18:44:02 TagBamWithReadSequenceExtended 1306s 1306s ********** NOTE: Picard's command line syntax is changing. 1306s ********** 1306s ********** For more information, please see: 1306s ********** 1306s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 1306s ********** 1306s ********** The command line looks like this in the new syntax: 1306s ********** 1306s ********** TagBamWithReadSequenceExtended -INPUT org/broadinstitute/dropseq/annotation/test.bam -OUTPUT out/TagBamWithReadSequenceExtended-molecular.bam -SUMMARY TagBamWithReadSequenceExtended-molecular.bam_summary.txt -BASE_RANGE 1-12 -BASE_QUALITY 10 -BARCODED_READ 1 -DISCARD_READ false -TAG_NAME XM -NUM_BASES_BELOW_QUALITY 1 1306s ********** 1306s 1306s 1306s 18:44:02.859 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1306s 18:44:02.874 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1306s 18:44:02.875 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1306s 18:44:02.884 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1306s 18:44:02.887 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1306s 18:44:02.888 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1306s [Sun Mar 24 18:44:02 UTC 2024] TagBamWithReadSequenceExtended INPUT=org/broadinstitute/dropseq/annotation/test.bam OUTPUT=out/TagBamWithReadSequenceExtended-molecular.bam SUMMARY=TagBamWithReadSequenceExtended-molecular.bam_summary.txt BASE_RANGE=1-12 BARCODED_READ=1 DISCARD_READ=false BASE_QUALITY=10 NUM_BASES_BELOW_QUALITY=1 TAG_NAME=XM TAG_BARCODED_READ=false HARD_CLIP_BASES=false TAG_QUALITY=XQ VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 1306s [Sun Mar 24 18:44:02 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 1306s 18:44:02.936 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 1306s 18:44:02.950 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 1307s INFO 2024-03-24 18:44:03 CustomBAMIterators Input SAM/BAM not in queryname order, sorting... 1307s INFO 2024-03-24 18:44:03 CustomBAMIterators Reading in records for query name sorting 1307s INFO 2024-03-24 18:44:03 CustomBAMIterators Sorting finished. 1307s 18:44:03.192 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 1307s INFO 2024-03-24 18:44:03 TagBamWithReadSequenceExtended Total of 0 reads processed. 1307s [Sun Mar 24 18:44:03 UTC 2024] org.broadinstitute.dropseqrna.utils.TagBamWithReadSequenceExtended done. Elapsed time: 0.01 minutes. 1307s Runtime.totalMemory()=129761280 1307s Passed 1307s 1307s Test 3 1307s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 1312s INFO 2024-03-24 18:44:08 FilterBam 1312s 1312s ********** NOTE: Picard's command line syntax is changing. 1312s ********** 1312s ********** For more information, please see: 1312s ********** 1312s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 1312s ********** 1312s ********** The command line looks like this in the new syntax: 1312s ********** 1312s ********** FilterBam -TAG_REJECT XQ -INPUT org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam -OUTPUT out/FilterBam.bam 1312s ********** 1312s 1312s 1312s 18:44:08.898 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1312s 18:44:08.916 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1312s 18:44:08.920 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1312s 18:44:08.928 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1312s 18:44:08.930 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1312s 18:44:08.932 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1312s [Sun Mar 24 18:44:08 UTC 2024] FilterBam INPUT=org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam OUTPUT=out/FilterBam.bam TAG_REJECT=[XQ] FILTER_PCR_DUPES=false RETAIN_ONLY_PRIMARY_READS=false DROP_REJECTED_REF=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 1312s [Sun Mar 24 18:44:08 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 1313s 18:44:09.191 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 1313s INFO 2024-03-24 18:44:09 FilterBam Total 995 reads processed. 995 reads accepted; 0 reads rejected. 1313s [Sun Mar 24 18:44:09 UTC 2024] org.broadinstitute.dropseqrna.utils.FilterBam done. Elapsed time: 0.02 minutes. 1313s Runtime.totalMemory()=129761280 1313s Passed 1313s 1313s Test 4 1314s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 1319s INFO 2024-03-24 18:44:15 TrimStartingSequence 1319s 1319s ********** NOTE: Picard's command line syntax is changing. 1319s ********** 1319s ********** For more information, please see: 1319s ********** 1319s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 1319s ********** 1319s ********** The command line looks like this in the new syntax: 1319s ********** 1319s ********** TrimStartingSequence -INPUT out/FilterBam.bam -OUTPUT out/TrimStartingSequence.bam -OUTPUT_SUMMARY out/TrimStartingSequence.summary.txt -SEQUENCE AAGCAGTGGTATCAACGCAGAGTGAATGGG -MISMATCHES 0 -NUM_BASES 5 1319s ********** 1319s 1319s 1319s 18:44:15.640 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1319s 18:44:15.648 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1319s 18:44:15.649 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1319s 18:44:15.654 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1319s 18:44:15.655 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1319s 18:44:15.656 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1319s [Sun Mar 24 18:44:15 UTC 2024] TrimStartingSequence INPUT=out/FilterBam.bam OUTPUT=out/TrimStartingSequence.bam OUTPUT_SUMMARY=out/TrimStartingSequence.summary.txt SEQUENCE=AAGCAGTGGTATCAACGCAGAGTGAATGGG MISMATCHES=0 NUM_BASES=5 LEGACY=false TRIM_TAG=ZS VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 1319s [Sun Mar 24 18:44:15 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 1319s 18:44:15.720 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 1319s 18:44:15.783 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 1319s 18:44:15.917 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 1320s INFO 2024-03-24 18:44:16 TrimStartingSequence Number of reads trimmed: 210 total reads: 995 1320s [Sun Mar 24 18:44:16 UTC 2024] org.broadinstitute.dropseqrna.readtrimming.TrimStartingSequence done. Elapsed time: 0.02 minutes. 1320s Runtime.totalMemory()=129761280 1320s Passed 1320s 1320s Test 5 1320s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 1325s INFO 2024-03-24 18:44:21 PolyATrimmer 1325s 1325s ********** NOTE: Picard's command line syntax is changing. 1325s ********** 1325s ********** For more information, please see: 1325s ********** 1325s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 1325s ********** 1325s ********** The command line looks like this in the new syntax: 1325s ********** 1325s ********** PolyATrimmer -INPUT out/TrimStartingSequence.bam -OUTPUT out/PolyATrimmer.bam -OUTPUT_SUMMARY out/PolyATrimmer.summary.bam -MISMATCHES 0 -NUM_BASES 6 -USE_NEW_TRIMMER true 1325s ********** 1325s 1325s 1326s 18:44:21.963 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1326s 18:44:21.977 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1326s 18:44:21.979 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1326s 18:44:21.987 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1326s 18:44:21.992 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 1326s 18:44:21.992 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 1326s [Sun Mar 24 18:44:22 UTC 2024] PolyATrimmer INPUT=out/TrimStartingSequence.bam OUTPUT=out/PolyATrimmer.bam OUTPUT_SUMMARY=out/PolyATrimmer.summary.bam USE_NEW_TRIMMER=true MISMATCHES=0 NUM_BASES=6 TRIM_TAG=ZP ADAPTER=~XM~XC MAX_ADAPTER_ERROR_RATE=0.1 MIN_ADAPTER_MATCH=4 MIN_POLY_A_LENGTH=20 MIN_POLY_A_LENGTH_NO_ADAPTER_MATCH=6 DUBIOUS_ADAPTER_MATCH_LENGTH=6 MAX_POLY_A_ERROR_RATE=0.1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 1326s [Sun Mar 24 18:44:22 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 1326s 18:44:22.111 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 1326s 18:44:22.137 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 1326s 18:44:22.250 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 1326s INFO 2024-03-24 18:44:22 PolyATrimmer Total 995 reads processed. 1326s INFO 2024-03-24 18:44:22 PolyATrimmer Number of reads trimmed: 290 1326s INFO 2024-03-24 18:44:22 PolyATrimmer Number of reads completely trimmed: 6 1326s [Sun Mar 24 18:44:22 UTC 2024] org.broadinstitute.dropseqrna.readtrimming.PolyATrimmer done. Elapsed time: 0.02 minutes. 1326s Runtime.totalMemory()=129761280 1327s Passed 1327s 1327s autopkgtest [18:44:23]: test drop-seq-run-unit-test: -----------------------] 1328s autopkgtest [18:44:24]: test drop-seq-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1328s drop-seq-run-unit-test PASS 1328s autopkgtest [18:44:24]: test fastqc-run-unit-test: preparing testbed 1461s autopkgtest [18:46:37]: testbed dpkg architecture: arm64 1461s autopkgtest [18:46:37]: testbed apt version: 2.7.12 1461s autopkgtest [18:46:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1463s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1463s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 1463s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 1465s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 1465s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 1466s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 1466s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 1466s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 1466s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 1466s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 1466s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 1466s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 1466s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 1475s Fetched 9848 kB in 6s (1696 kB/s) 1475s Reading package lists... 1481s Reading package lists... 1481s Building dependency tree... 1481s Reading state information... 1483s Calculating upgrade... 1483s The following packages will be REMOVED: 1483s libmagic1 libssl3 1483s The following NEW packages will be installed: 1483s libmagic1t64 libssl3t64 1483s The following packages have been kept back: 1483s curl 1483s The following packages will be upgraded: 1483s file libmagic-mgc openssl 1484s 3 upgraded, 2 newly installed, 2 to remove and 1 not upgraded. 1484s Need to get 3192 kB of archives. 1484s After this operation, 145 kB of additional disk space will be used. 1484s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 1484s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 1484s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 1484s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 1484s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 1485s Fetched 3192 kB in 1s (4182 kB/s) 1486s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 1486s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 1486s Unpacking file (1:5.45-3) over (1:5.45-2) ... 1486s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 1486s Removing libmagic1:arm64 (1:5.45-2) ... 1486s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 1486s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 1486s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 1486s Selecting previously unselected package libmagic1t64:arm64. 1486s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 1486s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 1486s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 1487s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 1487s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 1487s wget depends on libssl3 (>= 3.0.0). 1487s u-boot-tools depends on libssl3 (>= 3.0.0). 1487s tnftp depends on libssl3 (>= 3.0.0). 1487s tcpdump depends on libssl3 (>= 3.0.0). 1487s systemd-resolved depends on libssl3 (>= 3.0.0). 1487s systemd depends on libssl3 (>= 3.0.0). 1487s sudo depends on libssl3 (>= 3.0.0). 1487s sbsigntool depends on libssl3 (>= 3.0.0). 1487s rsync depends on libssl3 (>= 3.0.0). 1487s python3-cryptography depends on libssl3 (>= 3.0.0). 1487s openssh-server depends on libssl3 (>= 3.0.10). 1487s openssh-client depends on libssl3 (>= 3.0.10). 1487s mtd-utils depends on libssl3 (>= 3.0.0). 1487s mokutil depends on libssl3 (>= 3.0.0). 1487s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 1487s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 1487s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 1487s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 1487s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 1487s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 1487s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 1487s libnvme1 depends on libssl3 (>= 3.0.0). 1487s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 1487s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 1487s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 1487s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 1487s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 1487s kmod depends on libssl3 (>= 3.0.0). 1487s dhcpcd-base depends on libssl3 (>= 3.0.0). 1487s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 1487s 1487s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 1487s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 1487s Selecting previously unselected package libssl3t64:arm64. 1487s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 1487s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 1487s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 1488s Setting up libmagic-mgc (1:5.45-3) ... 1488s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 1488s Setting up libmagic1t64:arm64 (1:5.45-3) ... 1488s Setting up file (1:5.45-3) ... 1488s Setting up openssl (3.0.13-0ubuntu2) ... 1488s Processing triggers for man-db (2.12.0-3) ... 1489s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1490s Reading package lists... 1491s Building dependency tree... 1491s Reading state information... 1492s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 1494s sh: Attempting to set up Debian/Ubuntu apt sources automatically 1494s sh: Distribution appears to be Ubuntu 1497s Reading package lists... 1497s Building dependency tree... 1497s Reading state information... 1499s eatmydata is already the newest version (131-1). 1499s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1499s Reading package lists... 1499s Building dependency tree... 1499s Reading state information... 1501s dbus is already the newest version (1.14.10-4ubuntu1). 1501s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1501s Reading package lists... 1501s Building dependency tree... 1501s Reading state information... 1503s rng-tools-debian is already the newest version (2.4). 1503s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1503s Reading package lists... 1504s Building dependency tree... 1504s Reading state information... 1505s The following packages will be REMOVED: 1505s cloud-init* python3-configobj* python3-debconf* 1506s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 1506s After this operation, 3256 kB disk space will be freed. 1506s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 1506s Removing cloud-init (24.1.2-0ubuntu1) ... 1508s Removing python3-configobj (5.0.8-3) ... 1508s Removing python3-debconf (1.5.86) ... 1508s Processing triggers for man-db (2.12.0-3) ... 1509s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75525 files and directories currently installed.) 1509s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 1512s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1512s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1512s invoke-rc.d: policy-rc.d denied execution of try-restart. 1512s Reading package lists... 1513s Building dependency tree... 1513s Reading state information... 1515s linux-generic is already the newest version (6.8.0-11.11+1). 1515s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1515s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1515s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1515s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1524s Reading package lists... 1524s Reading package lists... 1524s Building dependency tree... 1524s Reading state information... 1526s Calculating upgrade... 1527s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1527s Reading package lists... 1527s Building dependency tree... 1527s Reading state information... 1529s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1529s autopkgtest [18:47:45]: rebooting testbed after setup commands that affected boot 1689s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1709s Reading package lists... 1709s Building dependency tree... 1709s Reading state information... 1710s Starting pkgProblemResolver with broken count: 0 1710s Starting 2 pkgProblemResolver with broken count: 0 1710s Done 1711s The following additional packages will be installed: 1711s adwaita-icon-theme at-spi2-common ca-certificates-java default-jre 1711s default-jre-headless fastqc fontconfig fontconfig-config fonts-dejavu-core 1711s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 1711s humanity-icon-theme java-common libaec0 libapache-pom-java libargs4j-java 1711s libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 1711s libavahi-common3 libcairo2 libcommons-compress-java libcommons-io-java 1711s libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java 1711s libcommons-math3-java libcommons-parent-java libcups2 libdatrie1 libdeflate0 1711s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfindbin-libs-perl 1711s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 1711s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 1711s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhdf5-103-1 libhtsjdk-java 1711s libjbig0 libjbzip2-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 1711s libllvm17 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java 1711s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 1711s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 1711s librhino-java libsharpyuv0 libsis-base-java libsis-base-jni 1711s libsis-jhdf5-java libsis-jhdf5-jni libsnappy-java libsnappy-jni libsnappy1v5 1711s libsz2 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1 1711s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 1711s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 1711s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 1711s libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre 1711s openjdk-21-jre-headless ubuntu-mono unzip x11-common 1711s Suggested packages: 1711s libasound2-plugins alsa-utils libasm-java libxz-java libcommons-io-java-doc 1711s libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java 1711s cups-common gvfs picard-tools liblcms2-utils libngs-java-doc pcscd rhino 1711s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 1711s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic zip 1711s Recommended packages: 1711s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 1711s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 1711s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 1712s The following NEW packages will be installed: 1712s adwaita-icon-theme at-spi2-common autopkgtest-satdep ca-certificates-java 1712s default-jre default-jre-headless fastqc fontconfig fontconfig-config 1712s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 1712s humanity-icon-theme java-common libaec0 libapache-pom-java libargs4j-java 1712s libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 1712s libavahi-common3 libcairo2 libcommons-compress-java libcommons-io-java 1712s libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java 1712s libcommons-math3-java libcommons-parent-java libcups2 libdatrie1 libdeflate0 1712s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfindbin-libs-perl 1712s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 1712s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 1712s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhdf5-103-1 libhtsjdk-java 1712s libjbig0 libjbzip2-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 1712s libllvm17 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java 1712s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 1712s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 1712s librhino-java libsharpyuv0 libsis-base-java libsis-base-jni 1712s libsis-jhdf5-java libsis-jhdf5-jni libsnappy-java libsnappy-jni libsnappy1v5 1712s libsz2 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1 1712s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 1712s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 1712s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 1712s libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre 1712s openjdk-21-jre-headless ubuntu-mono unzip x11-common 1712s 0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded. 1712s Need to get 103 MB/103 MB of archives. 1712s After this operation, 445 MB of additional disk space will be used. 1712s Get:1 /tmp/autopkgtest.opYCPy/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 1712s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 1712s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 1712s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 1712s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 1712s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 1712s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 1712s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 1712s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 1712s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 1712s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 1712s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 1712s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 1712s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 1712s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 1712s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 1712s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 1713s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 1713s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 1713s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 1713s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 1713s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 1713s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 1713s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 1713s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 1713s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 1713s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 1713s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 1713s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 1713s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 1713s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 1713s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 1713s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 1713s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 1715s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 1715s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 1715s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 1715s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 1715s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 1715s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 1715s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 1715s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 1715s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 1715s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 1715s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 1715s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 1715s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 1715s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 1715s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 1715s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 1715s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 1715s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 1715s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 1715s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 1715s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 1715s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 1715s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 1715s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 1715s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 1715s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 1715s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 1715s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 1715s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 1715s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 1715s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 1715s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 1715s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 1715s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 1715s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 1715s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 1715s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 1715s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 1715s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 1715s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 1716s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 1717s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 1717s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 1717s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 1717s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 1717s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1717s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 1717s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 1717s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 1717s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math3-java all 3.6.1-3 [2016 kB] 1717s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjbzip2-java all 0.9.1-8 [42.4 kB] 1717s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 1717s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 1717s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 1717s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 1717s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 1717s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 1717s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 1717s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 1717s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 1717s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 1717s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 1717s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 1717s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 1717s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 1717s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 1717s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 1717s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 1717s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 1717s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 1718s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libfindbin-libs-perl all 3.0.2-1 [22.3 kB] 1718s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libargs4j-java all 2.33-2 [137 kB] 1718s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 1718s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 1718s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libsis-base-jni arm64 18.09~pre1+git20180928.45fbd31+dfsg-3 [13.2 kB] 1718s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libsis-base-java all 18.09~pre1+git20180928.45fbd31+dfsg-3 [96.4 kB] 1718s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 1718s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 1718s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 1718s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libsis-jhdf5-jni arm64 19.04.1+dfsg-4 [111 kB] 1718s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libsis-jhdf5-java all 19.04.1+dfsg-4 [1491 kB] 1718s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 fastqc all 0.12.1+dfsg-3 [379 kB] 1718s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 1719s Fetched 103 MB in 6s (17.3 MB/s) 1719s Selecting previously unselected package libgdk-pixbuf2.0-common. 1720s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75470 files and directories currently installed.) 1720s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 1720s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 1720s Selecting previously unselected package libjpeg-turbo8:arm64. 1720s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 1720s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1720s Selecting previously unselected package libjpeg8:arm64. 1720s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 1720s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1720s Selecting previously unselected package libdeflate0:arm64. 1720s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 1720s Unpacking libdeflate0:arm64 (1.19-1) ... 1720s Selecting previously unselected package libjbig0:arm64. 1720s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 1720s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 1720s Selecting previously unselected package liblerc4:arm64. 1720s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 1720s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1720s Selecting previously unselected package libsharpyuv0:arm64. 1720s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 1720s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 1720s Selecting previously unselected package libwebp7:arm64. 1720s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 1720s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 1720s Selecting previously unselected package libtiff6:arm64. 1720s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 1720s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1720s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 1720s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 1720s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 1720s Selecting previously unselected package gtk-update-icon-cache. 1721s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 1721s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 1721s Selecting previously unselected package hicolor-icon-theme. 1721s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 1721s Unpacking hicolor-icon-theme (0.17-2) ... 1721s Selecting previously unselected package humanity-icon-theme. 1721s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 1721s Unpacking humanity-icon-theme (0.6.16) ... 1725s Selecting previously unselected package ubuntu-mono. 1725s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 1725s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 1727s Selecting previously unselected package adwaita-icon-theme. 1727s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 1727s Unpacking adwaita-icon-theme (46~rc-1) ... 1727s Selecting previously unselected package at-spi2-common. 1727s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 1727s Unpacking at-spi2-common (2.50.0-1) ... 1728s Selecting previously unselected package ca-certificates-java. 1728s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 1728s Unpacking ca-certificates-java (20240118) ... 1728s Selecting previously unselected package java-common. 1728s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 1728s Unpacking java-common (0.75+exp1) ... 1728s Selecting previously unselected package libavahi-common-data:arm64. 1728s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 1728s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 1728s Selecting previously unselected package libavahi-common3:arm64. 1728s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 1728s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 1728s Selecting previously unselected package libavahi-client3:arm64. 1728s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 1728s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 1728s Selecting previously unselected package libcups2:arm64. 1728s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 1728s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 1728s Selecting previously unselected package liblcms2-2:arm64. 1728s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 1728s Unpacking liblcms2-2:arm64 (2.14-2) ... 1728s Selecting previously unselected package fonts-dejavu-mono. 1728s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 1728s Unpacking fonts-dejavu-mono (2.37-8) ... 1728s Selecting previously unselected package fonts-dejavu-core. 1728s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 1728s Unpacking fonts-dejavu-core (2.37-8) ... 1729s Selecting previously unselected package fontconfig-config. 1729s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 1729s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1729s Selecting previously unselected package libfontconfig1:arm64. 1729s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 1729s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1729s Selecting previously unselected package libasound2-data. 1729s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 1729s Unpacking libasound2-data (1.2.10-3build1) ... 1729s Selecting previously unselected package libasound2:arm64. 1730s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 1730s Unpacking libasound2:arm64 (1.2.10-3build1) ... 1730s Selecting previously unselected package libgraphite2-3:arm64. 1730s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 1730s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 1730s Selecting previously unselected package libharfbuzz0b:arm64. 1730s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 1730s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 1730s Selecting previously unselected package libpcsclite1:arm64. 1730s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 1730s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 1730s Selecting previously unselected package openjdk-21-jre-headless:arm64. 1730s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 1730s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 1734s Selecting previously unselected package default-jre-headless. 1734s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 1734s Unpacking default-jre-headless (2:1.21-75+exp1) ... 1735s Selecting previously unselected package libgtk2.0-common. 1735s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 1735s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 1735s Selecting previously unselected package libatk1.0-0:arm64. 1735s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 1735s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 1735s Selecting previously unselected package libpixman-1-0:arm64. 1735s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 1735s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 1735s Selecting previously unselected package libxcb-render0:arm64. 1735s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 1735s Unpacking libxcb-render0:arm64 (1.15-1) ... 1735s Selecting previously unselected package libxcb-shm0:arm64. 1735s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 1735s Unpacking libxcb-shm0:arm64 (1.15-1) ... 1735s Selecting previously unselected package libxrender1:arm64. 1735s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 1735s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 1735s Selecting previously unselected package libcairo2:arm64. 1735s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 1735s Unpacking libcairo2:arm64 (1.18.0-1) ... 1735s Selecting previously unselected package fontconfig. 1735s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 1735s Unpacking fontconfig (2.15.0-1ubuntu1) ... 1735s Selecting previously unselected package libthai-data. 1735s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 1735s Unpacking libthai-data (0.1.29-2) ... 1735s Selecting previously unselected package libdatrie1:arm64. 1735s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 1735s Unpacking libdatrie1:arm64 (0.2.13-3) ... 1736s Selecting previously unselected package libthai0:arm64. 1736s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 1736s Unpacking libthai0:arm64 (0.1.29-2) ... 1736s Selecting previously unselected package libpango-1.0-0:arm64. 1736s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 1736s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1736s Selecting previously unselected package libpangoft2-1.0-0:arm64. 1736s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 1736s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 1736s Selecting previously unselected package libpangocairo-1.0-0:arm64. 1736s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 1736s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 1736s Selecting previously unselected package libxcomposite1:arm64. 1736s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 1736s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 1736s Selecting previously unselected package libxfixes3:arm64. 1736s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 1736s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 1736s Selecting previously unselected package libxcursor1:arm64. 1736s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 1736s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 1736s Selecting previously unselected package libxdamage1:arm64. 1736s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 1736s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 1736s Selecting previously unselected package libxi6:arm64. 1736s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 1736s Unpacking libxi6:arm64 (2:1.8.1-1) ... 1736s Selecting previously unselected package libxinerama1:arm64. 1736s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 1736s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 1736s Selecting previously unselected package libxrandr2:arm64. 1737s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 1737s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 1737s Selecting previously unselected package libgtk2.0-0:arm64. 1737s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 1737s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 1737s Selecting previously unselected package libglvnd0:arm64. 1737s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 1737s Unpacking libglvnd0:arm64 (1.7.0-1) ... 1737s Selecting previously unselected package libglapi-mesa:arm64. 1737s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 1737s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1737s Selecting previously unselected package libx11-xcb1:arm64. 1737s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 1737s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 1737s Selecting previously unselected package libxcb-dri2-0:arm64. 1737s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 1737s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 1737s Selecting previously unselected package libxcb-dri3-0:arm64. 1737s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 1737s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 1737s Selecting previously unselected package libxcb-glx0:arm64. 1737s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 1737s Unpacking libxcb-glx0:arm64 (1.15-1) ... 1737s Selecting previously unselected package libxcb-present0:arm64. 1737s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 1737s Unpacking libxcb-present0:arm64 (1.15-1) ... 1737s Selecting previously unselected package libxcb-randr0:arm64. 1738s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 1738s Unpacking libxcb-randr0:arm64 (1.15-1) ... 1738s Selecting previously unselected package libxcb-sync1:arm64. 1738s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 1738s Unpacking libxcb-sync1:arm64 (1.15-1) ... 1738s Selecting previously unselected package libxcb-xfixes0:arm64. 1738s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 1738s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 1738s Selecting previously unselected package libxshmfence1:arm64. 1738s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 1738s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 1738s Selecting previously unselected package libxxf86vm1:arm64. 1738s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 1738s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1738s Selecting previously unselected package libvulkan1:arm64. 1738s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 1738s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 1738s Selecting previously unselected package libdrm-amdgpu1:arm64. 1738s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 1738s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 1738s Selecting previously unselected package libdrm-nouveau2:arm64. 1738s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 1738s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 1738s Selecting previously unselected package libdrm-radeon1:arm64. 1738s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 1738s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 1738s Selecting previously unselected package libllvm17:arm64. 1738s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 1738s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 1741s Selecting previously unselected package libgl1-mesa-dri:arm64. 1741s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 1741s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1742s Selecting previously unselected package libglx-mesa0:arm64. 1742s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 1742s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1742s Selecting previously unselected package libglx0:arm64. 1742s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 1742s Unpacking libglx0:arm64 (1.7.0-1) ... 1742s Selecting previously unselected package libgl1:arm64. 1742s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 1742s Unpacking libgl1:arm64 (1.7.0-1) ... 1742s Selecting previously unselected package libgif7:arm64. 1742s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 1742s Unpacking libgif7:arm64 (5.2.1-2.5) ... 1742s Selecting previously unselected package x11-common. 1742s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 1742s Unpacking x11-common (1:7.7+23ubuntu2) ... 1742s Selecting previously unselected package libxtst6:arm64. 1742s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 1742s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 1742s Selecting previously unselected package openjdk-21-jre:arm64. 1742s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 1742s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 1744s Selecting previously unselected package default-jre. 1744s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 1744s Unpacking default-jre (2:1.21-75+exp1) ... 1744s Selecting previously unselected package libcommons-math3-java. 1744s Preparing to unpack .../082-libcommons-math3-java_3.6.1-3_all.deb ... 1744s Unpacking libcommons-math3-java (3.6.1-3) ... 1744s Selecting previously unselected package libjbzip2-java. 1744s Preparing to unpack .../083-libjbzip2-java_0.9.1-8_all.deb ... 1744s Unpacking libjbzip2-java (0.9.1-8) ... 1744s Selecting previously unselected package libapache-pom-java. 1744s Preparing to unpack .../084-libapache-pom-java_29-2_all.deb ... 1744s Unpacking libapache-pom-java (29-2) ... 1744s Selecting previously unselected package libcommons-parent-java. 1744s Preparing to unpack .../085-libcommons-parent-java_56-1_all.deb ... 1744s Unpacking libcommons-parent-java (56-1) ... 1744s Selecting previously unselected package libcommons-compress-java. 1744s Preparing to unpack .../086-libcommons-compress-java_1.25.0-1_all.deb ... 1744s Unpacking libcommons-compress-java (1.25.0-1) ... 1744s Selecting previously unselected package libcommons-logging-java. 1744s Preparing to unpack .../087-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 1744s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 1744s Selecting previously unselected package libcommons-jexl2-java. 1744s Preparing to unpack .../088-libcommons-jexl2-java_2.1.1-6_all.deb ... 1744s Unpacking libcommons-jexl2-java (2.1.1-6) ... 1744s Selecting previously unselected package libmjson-java. 1744s Preparing to unpack .../089-libmjson-java_1.4.0-3_all.deb ... 1744s Unpacking libmjson-java (1.4.0-3) ... 1744s Selecting previously unselected package libmbedcrypto7:arm64. 1744s Preparing to unpack .../090-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 1744s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 1744s Selecting previously unselected package libmbedx509-1:arm64. 1744s Preparing to unpack .../091-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 1744s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 1744s Selecting previously unselected package libmbedtls14:arm64. 1744s Preparing to unpack .../092-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 1744s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 1744s Selecting previously unselected package ncbi-vdb-data. 1744s Preparing to unpack .../093-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 1744s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 1744s Selecting previously unselected package libncbi-vdb3:arm64. 1744s Preparing to unpack .../094-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 1744s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 1744s Selecting previously unselected package libncbi-ngs3:arm64. 1744s Preparing to unpack .../095-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1744s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 1744s Selecting previously unselected package libngs-jni:arm64. 1744s Preparing to unpack .../096-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1744s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 1744s Selecting previously unselected package libngs-java:arm64. 1744s Preparing to unpack .../097-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1744s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 1744s Selecting previously unselected package librhino-java. 1744s Preparing to unpack .../098-librhino-java_1.7.14-2.1_all.deb ... 1744s Unpacking librhino-java (1.7.14-2.1) ... 1744s Selecting previously unselected package libsnappy1v5:arm64. 1745s Preparing to unpack .../099-libsnappy1v5_1.1.10-1_arm64.deb ... 1745s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 1745s Selecting previously unselected package libsnappy-jni. 1745s Preparing to unpack .../100-libsnappy-jni_1.1.10.5-1_arm64.deb ... 1745s Unpacking libsnappy-jni (1.1.10.5-1) ... 1745s Selecting previously unselected package libsnappy-java. 1745s Preparing to unpack .../101-libsnappy-java_1.1.10.5-1_all.deb ... 1745s Unpacking libsnappy-java (1.1.10.5-1) ... 1745s Selecting previously unselected package libhtsjdk-java. 1745s Preparing to unpack .../102-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 1745s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 1745s Selecting previously unselected package libfindbin-libs-perl. 1745s Preparing to unpack .../103-libfindbin-libs-perl_3.0.2-1_all.deb ... 1745s Unpacking libfindbin-libs-perl (3.0.2-1) ... 1745s Selecting previously unselected package libargs4j-java. 1745s Preparing to unpack .../104-libargs4j-java_2.33-2_all.deb ... 1745s Unpacking libargs4j-java (2.33-2) ... 1745s Selecting previously unselected package libcommons-io-java. 1745s Preparing to unpack .../105-libcommons-io-java_2.11.0-2_all.deb ... 1745s Unpacking libcommons-io-java (2.11.0-2) ... 1745s Selecting previously unselected package libcommons-lang3-java. 1745s Preparing to unpack .../106-libcommons-lang3-java_3.14.0-1_all.deb ... 1745s Unpacking libcommons-lang3-java (3.14.0-1) ... 1745s Selecting previously unselected package libsis-base-jni. 1745s Preparing to unpack .../107-libsis-base-jni_18.09~pre1+git20180928.45fbd31+dfsg-3_arm64.deb ... 1745s Unpacking libsis-base-jni (18.09~pre1+git20180928.45fbd31+dfsg-3) ... 1745s Selecting previously unselected package libsis-base-java. 1745s Preparing to unpack .../108-libsis-base-java_18.09~pre1+git20180928.45fbd31+dfsg-3_all.deb ... 1745s Unpacking libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... 1746s Selecting previously unselected package libaec0:arm64. 1746s Preparing to unpack .../109-libaec0_1.1.2-1_arm64.deb ... 1746s Unpacking libaec0:arm64 (1.1.2-1) ... 1746s Selecting previously unselected package libsz2:arm64. 1746s Preparing to unpack .../110-libsz2_1.1.2-1_arm64.deb ... 1746s Unpacking libsz2:arm64 (1.1.2-1) ... 1746s Selecting previously unselected package libhdf5-103-1:arm64. 1746s Preparing to unpack .../111-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 1746s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 1746s Selecting previously unselected package libsis-jhdf5-jni. 1746s Preparing to unpack .../112-libsis-jhdf5-jni_19.04.1+dfsg-4_arm64.deb ... 1746s Unpacking libsis-jhdf5-jni (19.04.1+dfsg-4) ... 1746s Selecting previously unselected package libsis-jhdf5-java. 1746s Preparing to unpack .../113-libsis-jhdf5-java_19.04.1+dfsg-4_all.deb ... 1746s Unpacking libsis-jhdf5-java (19.04.1+dfsg-4) ... 1746s Selecting previously unselected package fastqc. 1746s Preparing to unpack .../114-fastqc_0.12.1+dfsg-3_all.deb ... 1746s Unpacking fastqc (0.12.1+dfsg-3) ... 1746s Selecting previously unselected package unzip. 1746s Preparing to unpack .../115-unzip_6.0-28ubuntu3_arm64.deb ... 1746s Unpacking unzip (6.0-28ubuntu3) ... 1746s Selecting previously unselected package autopkgtest-satdep. 1746s Preparing to unpack .../116-4-autopkgtest-satdep.deb ... 1746s Unpacking autopkgtest-satdep (0) ... 1747s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 1747s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 1747s Setting up liblcms2-2:arm64 (2.14-2) ... 1747s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 1747s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 1747s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 1747s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 1747s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 1747s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 1747s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1747s Setting up hicolor-icon-theme (0.17-2) ... 1747s Setting up libxi6:arm64 (2:1.8.1-1) ... 1747s Setting up java-common (0.75+exp1) ... 1747s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 1747s Setting up libdatrie1:arm64 (0.2.13-3) ... 1747s Setting up libxcb-render0:arm64 (1.15-1) ... 1747s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 1747s Setting up libglvnd0:arm64 (1.7.0-1) ... 1747s Setting up libmjson-java (1.4.0-3) ... 1747s Setting up libxcb-glx0:arm64 (1.15-1) ... 1747s Setting up unzip (6.0-28ubuntu3) ... 1747s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 1747s Setting up x11-common (1:7.7+23ubuntu2) ... 1748s Setting up libdeflate0:arm64 (1.19-1) ... 1748s Setting up libxcb-shm0:arm64 (1.15-1) ... 1748s Setting up libfindbin-libs-perl (3.0.2-1) ... 1748s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 1748s Setting up libaec0:arm64 (1.1.2-1) ... 1748s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1748s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 1748s Setting up libxcb-present0:arm64 (1.15-1) ... 1748s Setting up libasound2-data (1.2.10-3build1) ... 1748s Setting up libsis-base-jni (18.09~pre1+git20180928.45fbd31+dfsg-3) ... 1748s Setting up librhino-java (1.7.14-2.1) ... 1748s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 1748s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 1748s Setting up libxcb-sync1:arm64 (1.15-1) ... 1748s Setting up libapache-pom-java (29-2) ... 1748s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 1748s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 1748s Setting up fonts-dejavu-mono (2.37-8) ... 1748s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 1748s Setting up fonts-dejavu-core (2.37-8) ... 1748s Setting up libjbzip2-java (0.9.1-8) ... 1748s Setting up libpcsclite1:arm64 (2.0.0-1) ... 1748s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1748s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1748s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 1748s Setting up libwebp7:arm64 (1.3.2-0.4) ... 1748s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 1748s Setting up libgif7:arm64 (5.2.1-2.5) ... 1748s Setting up libxshmfence1:arm64 (1.3-1build4) ... 1748s Setting up at-spi2-common (2.50.0-1) ... 1748s Setting up libxcb-randr0:arm64 (1.15-1) ... 1748s Setting up libasound2:arm64 (1.2.10-3build1) ... 1748s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 1748s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 1748s Setting up libthai-data (0.1.29-2) ... 1748s Setting up libcommons-math3-java (3.6.1-3) ... 1748s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 1748s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 1748s Setting up ca-certificates-java (20240118) ... 1749s No JRE found. Skipping Java certificates setup. 1749s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 1749s Setting up libsnappy-jni (1.1.10.5-1) ... 1749s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 1749s Setting up libargs4j-java (2.33-2) ... 1749s Setting up libsz2:arm64 (1.1.2-1) ... 1749s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 1749s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 1749s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 1749s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 1749s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 1749s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 1749s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 1749s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1749s Setting up libcommons-parent-java (56-1) ... 1749s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 1749s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 1749s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 1749s Setting up libcommons-jexl2-java (2.1.1-6) ... 1749s Setting up libthai0:arm64 (0.1.29-2) ... 1749s Setting up libcommons-lang3-java (3.14.0-1) ... 1749s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 1749s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1749s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 1749s Setting up libsis-jhdf5-jni (19.04.1+dfsg-4) ... 1749s Setting up libsnappy-java (1.1.10.5-1) ... 1749s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1749s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 1749s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 1749s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 1749s Setting up fontconfig (2.15.0-1ubuntu1) ... 1751s Regenerating fonts cache... done. 1751s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 1751s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1751s Setting up libglx0:arm64 (1.7.0-1) ... 1751s Setting up libcommons-compress-java (1.25.0-1) ... 1751s Setting up libcommons-io-java (2.11.0-2) ... 1751s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1751s Setting up libcairo2:arm64 (1.18.0-1) ... 1751s Setting up libgl1:arm64 (1.7.0-1) ... 1751s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 1751s Setting up libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... 1751s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 1751s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 1751s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 1751s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 1751s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 1751s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 1751s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 1751s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 1751s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 1751s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 1752s Setting up libsis-jhdf5-java (19.04.1+dfsg-4) ... 1752s Setting up adwaita-icon-theme (46~rc-1) ... 1752s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 1752s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 1752s Setting up humanity-icon-theme (0.6.16) ... 1752s Setting up ubuntu-mono (24.04-0ubuntu1) ... 1753s Processing triggers for man-db (2.12.0-3) ... 1754s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1754s Processing triggers for ca-certificates-java (20240118) ... 1757s Adding debian:ACCVRAIZ1.pem 1757s Adding debian:AC_RAIZ_FNMT-RCM.pem 1757s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 1757s Adding debian:ANF_Secure_Server_Root_CA.pem 1757s Adding debian:Actalis_Authentication_Root_CA.pem 1757s Adding debian:AffirmTrust_Commercial.pem 1757s Adding debian:AffirmTrust_Networking.pem 1757s Adding debian:AffirmTrust_Premium.pem 1757s Adding debian:AffirmTrust_Premium_ECC.pem 1757s Adding debian:Amazon_Root_CA_1.pem 1757s Adding debian:Amazon_Root_CA_2.pem 1757s Adding debian:Amazon_Root_CA_3.pem 1757s Adding debian:Amazon_Root_CA_4.pem 1757s Adding debian:Atos_TrustedRoot_2011.pem 1757s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 1757s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 1757s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 1757s Adding debian:BJCA_Global_Root_CA1.pem 1757s Adding debian:BJCA_Global_Root_CA2.pem 1757s Adding debian:Baltimore_CyberTrust_Root.pem 1757s Adding debian:Buypass_Class_2_Root_CA.pem 1757s Adding debian:Buypass_Class_3_Root_CA.pem 1757s Adding debian:CA_Disig_Root_R2.pem 1757s Adding debian:CFCA_EV_ROOT.pem 1757s Adding debian:COMODO_Certification_Authority.pem 1757s Adding debian:COMODO_ECC_Certification_Authority.pem 1757s Adding debian:COMODO_RSA_Certification_Authority.pem 1757s Adding debian:Certainly_Root_E1.pem 1757s Adding debian:Certainly_Root_R1.pem 1757s Adding debian:Certigna.pem 1757s Adding debian:Certigna_Root_CA.pem 1757s Adding debian:Certum_EC-384_CA.pem 1757s Adding debian:Certum_Trusted_Network_CA.pem 1757s Adding debian:Certum_Trusted_Network_CA_2.pem 1757s Adding debian:Certum_Trusted_Root_CA.pem 1757s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 1757s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 1757s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 1757s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 1757s Adding debian:Comodo_AAA_Services_root.pem 1757s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 1757s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 1757s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 1757s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 1757s Adding debian:DigiCert_Assured_ID_Root_CA.pem 1757s Adding debian:DigiCert_Assured_ID_Root_G2.pem 1757s Adding debian:DigiCert_Assured_ID_Root_G3.pem 1757s Adding debian:DigiCert_Global_Root_CA.pem 1757s Adding debian:DigiCert_Global_Root_G2.pem 1757s Adding debian:DigiCert_Global_Root_G3.pem 1757s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 1757s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 1757s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 1757s Adding debian:DigiCert_Trusted_Root_G4.pem 1757s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 1757s Adding debian:Entrust_Root_Certification_Authority.pem 1757s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 1757s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 1757s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 1757s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 1757s Adding debian:GLOBALTRUST_2020.pem 1757s Adding debian:GTS_Root_R1.pem 1757s Adding debian:GTS_Root_R2.pem 1757s Adding debian:GTS_Root_R3.pem 1757s Adding debian:GTS_Root_R4.pem 1757s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 1757s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 1757s Adding debian:GlobalSign_Root_CA.pem 1757s Adding debian:GlobalSign_Root_CA_-_R3.pem 1757s Adding debian:GlobalSign_Root_CA_-_R6.pem 1757s Adding debian:GlobalSign_Root_E46.pem 1757s Adding debian:GlobalSign_Root_R46.pem 1757s Adding debian:Go_Daddy_Class_2_CA.pem 1757s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 1757s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 1757s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 1757s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 1757s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 1757s Adding debian:HiPKI_Root_CA_-_G1.pem 1757s Adding debian:Hongkong_Post_Root_CA_3.pem 1757s Adding debian:ISRG_Root_X1.pem 1757s Adding debian:ISRG_Root_X2.pem 1757s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 1757s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 1757s Adding debian:Izenpe.com.pem 1757s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 1757s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 1757s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 1757s Adding debian:NAVER_Global_Root_Certification_Authority.pem 1757s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 1757s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 1757s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 1757s Adding debian:QuoVadis_Root_CA_1_G3.pem 1757s Adding debian:QuoVadis_Root_CA_2.pem 1757s Adding debian:QuoVadis_Root_CA_2_G3.pem 1757s Adding debian:QuoVadis_Root_CA_3.pem 1757s Adding debian:QuoVadis_Root_CA_3_G3.pem 1757s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 1757s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 1758s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 1758s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 1758s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 1758s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 1758s Adding debian:SZAFIR_ROOT_CA2.pem 1758s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 1758s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 1758s Adding debian:SecureSign_RootCA11.pem 1758s Adding debian:SecureTrust_CA.pem 1758s Adding debian:Secure_Global_CA.pem 1758s Adding debian:Security_Communication_ECC_RootCA1.pem 1758s Adding debian:Security_Communication_RootCA2.pem 1758s Adding debian:Security_Communication_RootCA3.pem 1758s Adding debian:Security_Communication_Root_CA.pem 1758s Adding debian:Starfield_Class_2_CA.pem 1758s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 1758s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 1758s Adding debian:SwissSign_Gold_CA_-_G2.pem 1758s Adding debian:SwissSign_Silver_CA_-_G2.pem 1758s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 1758s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 1758s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 1758s Adding debian:TWCA_Global_Root_CA.pem 1758s Adding debian:TWCA_Root_Certification_Authority.pem 1758s Adding debian:TeliaSonera_Root_CA_v1.pem 1758s Adding debian:Telia_Root_CA_v2.pem 1758s Adding debian:TrustAsia_Global_Root_CA_G3.pem 1758s Adding debian:TrustAsia_Global_Root_CA_G4.pem 1758s Adding debian:Trustwave_Global_Certification_Authority.pem 1758s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 1758s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 1758s Adding debian:TunTrust_Root_CA.pem 1758s Adding debian:UCA_Extended_Validation_Root.pem 1758s Adding debian:UCA_Global_G2_Root.pem 1758s Adding debian:USERTrust_ECC_Certification_Authority.pem 1758s Adding debian:USERTrust_RSA_Certification_Authority.pem 1758s Adding debian:XRamp_Global_CA_Root.pem 1758s Adding debian:certSIGN_ROOT_CA.pem 1758s Adding debian:certSIGN_Root_CA_G2.pem 1758s Adding debian:e-Szigno_Root_CA_2017.pem 1758s Adding debian:ePKI_Root_Certification_Authority.pem 1758s Adding debian:emSign_ECC_Root_CA_-_C3.pem 1758s Adding debian:emSign_ECC_Root_CA_-_G3.pem 1758s Adding debian:emSign_Root_CA_-_C1.pem 1758s Adding debian:emSign_Root_CA_-_G1.pem 1758s Adding debian:vTrus_ECC_Root_CA.pem 1758s Adding debian:vTrus_Root_CA.pem 1758s done. 1758s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 1758s Setting up default-jre-headless (2:1.21-75+exp1) ... 1758s Setting up default-jre (2:1.21-75+exp1) ... 1758s Setting up fastqc (0.12.1+dfsg-3) ... 1758s Setting up autopkgtest-satdep (0) ... 1770s (Reading database ... 89647 files and directories currently installed.) 1770s Removing autopkgtest-satdep (0) ... 1780s autopkgtest [18:51:56]: test fastqc-run-unit-test: [----------------------- 1782s null 1782s Started analysis of example.fastq 1782s Analysis complete for example.fastq 1791s Summary results match for: fastqc example.fastq 1791s 1792s Started analysis of toy_sam.sam 1792s Analysis complete for toy_sam.sam 1799s Summary results match for: fastqc toy_sam.sam 1799s 1800s Started analysis of toy_bam.bam 1800s Analysis complete for toy_bam.bam 1808s Summary results match for: fastqc toy_bam.bam 1808s 1808s PASS 1809s autopkgtest [18:52:25]: test fastqc-run-unit-test: -----------------------] 1809s autopkgtest [18:52:25]: test fastqc-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1809s fastqc-run-unit-test PASS 1810s autopkgtest [18:52:26]: test jalview-run-unit-test: preparing testbed 1941s autopkgtest [18:54:37]: testbed dpkg architecture: arm64 1941s autopkgtest [18:54:37]: testbed apt version: 2.7.12 1941s autopkgtest [18:54:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1942s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1943s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 1943s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 1943s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 1944s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 1944s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 1944s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 1944s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 1944s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 1944s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 1944s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 1944s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 1944s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 1954s Fetched 9848 kB in 5s (1992 kB/s) 1955s Reading package lists... 1960s Reading package lists... 1961s Building dependency tree... 1961s Reading state information... 1962s Calculating upgrade... 1963s The following packages will be REMOVED: 1963s libmagic1 libssl3 1963s The following NEW packages will be installed: 1963s libmagic1t64 libssl3t64 1963s The following packages have been kept back: 1963s curl 1963s The following packages will be upgraded: 1963s file libmagic-mgc openssl 1963s 3 upgraded, 2 newly installed, 2 to remove and 1 not upgraded. 1963s Need to get 3192 kB of archives. 1963s After this operation, 145 kB of additional disk space will be used. 1963s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 1963s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 1964s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 1964s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 1964s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 1965s Fetched 3192 kB in 1s (4212 kB/s) 1965s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 1965s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 1965s Unpacking file (1:5.45-3) over (1:5.45-2) ... 1966s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 1966s Removing libmagic1:arm64 (1:5.45-2) ... 1966s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 1966s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 1966s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 1966s Selecting previously unselected package libmagic1t64:arm64. 1966s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 1966s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 1966s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 1966s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 1967s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 1967s wget depends on libssl3 (>= 3.0.0). 1967s u-boot-tools depends on libssl3 (>= 3.0.0). 1967s tnftp depends on libssl3 (>= 3.0.0). 1967s tcpdump depends on libssl3 (>= 3.0.0). 1967s systemd-resolved depends on libssl3 (>= 3.0.0). 1967s systemd depends on libssl3 (>= 3.0.0). 1967s sudo depends on libssl3 (>= 3.0.0). 1967s sbsigntool depends on libssl3 (>= 3.0.0). 1967s rsync depends on libssl3 (>= 3.0.0). 1967s python3-cryptography depends on libssl3 (>= 3.0.0). 1967s openssh-server depends on libssl3 (>= 3.0.10). 1967s openssh-client depends on libssl3 (>= 3.0.10). 1967s mtd-utils depends on libssl3 (>= 3.0.0). 1967s mokutil depends on libssl3 (>= 3.0.0). 1967s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 1967s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 1967s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 1967s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 1967s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 1967s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 1967s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 1967s libnvme1 depends on libssl3 (>= 3.0.0). 1967s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 1967s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 1967s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 1967s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 1967s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 1967s kmod depends on libssl3 (>= 3.0.0). 1967s dhcpcd-base depends on libssl3 (>= 3.0.0). 1967s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 1967s 1967s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 1967s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 1967s Selecting previously unselected package libssl3t64:arm64. 1967s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 1967s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 1967s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 1967s Setting up libmagic-mgc (1:5.45-3) ... 1967s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 1967s Setting up libmagic1t64:arm64 (1:5.45-3) ... 1967s Setting up file (1:5.45-3) ... 1967s Setting up openssl (3.0.13-0ubuntu2) ... 1967s Processing triggers for man-db (2.12.0-3) ... 1969s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1969s Reading package lists... 1970s Building dependency tree... 1970s Reading state information... 1972s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 1973s sh: Attempting to set up Debian/Ubuntu apt sources automatically 1973s sh: Distribution appears to be Ubuntu 1977s Reading package lists... 1977s Building dependency tree... 1977s Reading state information... 1979s eatmydata is already the newest version (131-1). 1979s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1979s Reading package lists... 1980s Building dependency tree... 1980s Reading state information... 1981s dbus is already the newest version (1.14.10-4ubuntu1). 1981s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1981s Reading package lists... 1982s Building dependency tree... 1982s Reading state information... 1984s rng-tools-debian is already the newest version (2.4). 1984s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1984s Reading package lists... 1984s Building dependency tree... 1984s Reading state information... 1986s The following packages will be REMOVED: 1986s cloud-init* python3-configobj* python3-debconf* 1987s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 1987s After this operation, 3256 kB disk space will be freed. 1987s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 1987s Removing cloud-init (24.1.2-0ubuntu1) ... 1989s Removing python3-configobj (5.0.8-3) ... 1990s Removing python3-debconf (1.5.86) ... 1990s Processing triggers for man-db (2.12.0-3) ... 1991s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75525 files and directories currently installed.) 1991s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 1993s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1993s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1993s invoke-rc.d: policy-rc.d denied execution of try-restart. 1994s Reading package lists... 1994s Building dependency tree... 1994s Reading state information... 1996s linux-generic is already the newest version (6.8.0-11.11+1). 1996s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1996s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1996s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1997s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 2006s Reading package lists... 2006s Reading package lists... 2006s Building dependency tree... 2006s Reading state information... 2008s Calculating upgrade... 2009s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2009s Reading package lists... 2010s Building dependency tree... 2010s Reading state information... 2012s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2012s autopkgtest [18:55:48]: rebooting testbed after setup commands that affected boot 2183s Reading package lists... 2184s Building dependency tree... 2184s Reading state information... 2184s Starting pkgProblemResolver with broken count: 0 2185s Starting 2 pkgProblemResolver with broken count: 0 2185s Done 2186s The following additional packages will be installed: 2186s adwaita-icon-theme ant ant-optional antlr at-spi2-common 2186s ca-certificates-java default-jre default-jre-headless fontconfig 2186s fontconfig-config fonts-dejavu-core fonts-dejavu-mono groovy 2186s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ivy jalview 2186s java-common javahelp2 junit4 libactivation-java libandroid-json-org-java 2186s libantlr-java libantlr4-runtime-java libaopalliance-java 2186s libapache-mime4j-java libapache-pom-java libapfloat-java libargs4j-java 2186s libasm-java libasound2 libasound2-data libatinject-jsr330-api-java 2186s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 2186s libaxis-java libbiojava6-java libbsf-java libcairo2 libcastor-core-java 2186s libcastor-xml-java libcdi-api-java libciftools-java libcodemodel-java 2186s libcommons-cli-java libcommons-codec-java libcommons-compress-java 2186s libcommons-discovery-java libcommons-exec-java libcommons-httpclient-java 2186s libcommons-io-java libcommons-jexl2-java libcommons-lang-java 2186s libcommons-lang3-java libcommons-logging-java libcommons-math-java 2186s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 2186s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 2186s libdtd-parser-java libel-api-java liberror-prone-java 2186s libexec-maven-plugin-java libfastinfoset-java libfastutil-java 2186s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 2186s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 2186s libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 2186s libgmbal-commons-java libgmbal-java libgmbal-pfl-java libgoogle-gson-java 2186s libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java 2186s libhamcrest-java libharfbuzz0b libhawtjni-runtime-java libhtsjdk-java 2186s libhttpclient-java libhttpcore-java libhttpmime-java libinchi1 2186s libintervalstorej-java libisorelax-java libistack-commons-java 2186s libitext5-java libjaba-client-java libjackson2-annotations-java 2186s libjackson2-core-java libjackson2-databind-java libjansi-java 2186s libjansi-native-java libjansi1-java libjaxb-api-java libjaxb-java 2186s libjaxen-java libjaxrs-api-java libjaxws-api-java libjaxws-java libjbig0 2186s libjersey1-client-java libjersey1-core-java libjetty9-java libjfreesvg-java 2186s libjgrapht-java libjgraphx-java libjheaps-java libjline2-java libjmol-java 2186s libjni-inchi-java libjni-inchi-jni libjpeg-turbo8 libjpeg8 2186s libjson-simple-java libjsoup-java libjsp-api-java libjsr305-java 2186s libjsr311-api-java libjswingreader-java libjws-api-java 2186s libknopflerfish-osgi-framework-java liblcms2-2 liblerc4 liblightcouch-java 2186s libllvm17 liblog4j1.2-java liblog4j2-java libmail-java 2186s libmaven-archiver-java libmaven-compiler-plugin-java 2186s libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java 2186s libmaven-resolver-java libmaven-shared-incremental-java 2186s libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java 2186s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmetro-policy-java 2186s libmiglayout-java libmimepull-java libmjson-java libmmtf-java 2186s libmongodb-java libmsgpack-java libmsv-java libnaga-java libncbi-ngs3 2186s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 2186s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 libplexus-archiver-java 2186s libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java 2186s libplexus-component-annotations-java libplexus-container-default-java 2186s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 2186s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox-java 2186s libqdox2-java librelaxng-datatype-java librhino-java librngom-java 2186s libsaaj-java libsaaj-ri-java libservlet-api-java libsharpyuv0 2186s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 2186s libsnappy-jni libsnappy1v5 libstax-ex-java libstax2-api-java 2186s libstreambuffer-java libthai-data libthai0 libtiff6 libtxw2-java 2186s libvamsas-client-java libvecmath-java libvulkan1 libwagon-http-java 2186s libwagon-provider-api-java libwebp7 libwebsocket-api-java libwoodstox-java 2186s libwsdl4j-java libx11-xcb1 libxbean-reflect-java libxcb-dri2-0 libxcb-dri3-0 2186s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 2186s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 2186s libxerces2-java libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 2186s libxml-commons-resolver1.1-java libxpp3-java libxrandr2 libxrender1 2186s libxshmfence1 libxsom-java libxstream-java libxtst6 libxxf86vm1 libxz-java 2186s ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless ubuntu-mono varna 2186s x11-common 2186s Suggested packages: 2186s ant-doc default-jdk | java-compiler | java-sdk javacc junit jython 2186s libbcel-java libcommons-net-java libjaxp1.3-java libjdepend-java 2186s libjsch-java liboro-java libregexp-java libxalan2-java groovy-doc ivy-doc 2186s libbcpg-java libbcprov-java libjsch-agent-proxy-java clustalw kalign 2186s t-coffee javahelp2-doc libandroid-json-org-java-doc libasound2-plugins 2186s alsa-utils libatinject-jsr330-api-java-doc libaxis-java-doc 2186s libbiojava6-java-doc bsh rhino libcastor-java-doc 2186s libcommons-httpclient-java-doc libcommons-io-java-doc 2186s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 2186s cups-common libxpp2-java libgoogle-gson-java-doc gvfs libcglib-java 2186s picard-tools libbcpkix-java libxml-security-java 2186s libjackson2-annotations-java-doc libjdom1-java libxom-java jetty9 2186s libjfreesvg-java-doc libjmol-java-doc libjson-simple-doc libjsoup-java-doc 2186s libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc libcommons-csv-java 2186s libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java 2186s libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjctools-java 2186s libjeromq-java libmail-java-doc libmaven-file-management-java-doc 2186s libmaven-shared-incremental-java-doc libmaven-shared-utils-java-doc 2186s liblogback-java libswt-gtk-4-java libmmtf-java-doc libngs-java-doc pcscd 2186s libeclipse-jdt-core-java libplexus-utils2-java-doc libqdox-java-doc testng 2186s libxerces2-java-doc libxml-commons-resolver1.1-java-doc libcglib-nodep-java 2186s libjdom2-java libjettison-java libjoda-time-java libkxml2-java libnss-mdns 2186s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 2186s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 2186s Recommended packages: 2186s librsvg2-common libgpars-groovy-java libjcommander-java alsa-ucm-conf 2186s alsa-topology-conf liboro-java libregexp-java libgdk-pixbuf2.0-bin 2186s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 2186s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 2186s The following NEW packages will be installed: 2186s adwaita-icon-theme ant ant-optional antlr at-spi2-common autopkgtest-satdep 2186s ca-certificates-java default-jre default-jre-headless fontconfig 2186s fontconfig-config fonts-dejavu-core fonts-dejavu-mono groovy 2186s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ivy jalview 2186s java-common javahelp2 junit4 libactivation-java libandroid-json-org-java 2186s libantlr-java libantlr4-runtime-java libaopalliance-java 2186s libapache-mime4j-java libapache-pom-java libapfloat-java libargs4j-java 2186s libasm-java libasound2 libasound2-data libatinject-jsr330-api-java 2186s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 2186s libaxis-java libbiojava6-java libbsf-java libcairo2 libcastor-core-java 2186s libcastor-xml-java libcdi-api-java libciftools-java libcodemodel-java 2186s libcommons-cli-java libcommons-codec-java libcommons-compress-java 2187s libcommons-discovery-java libcommons-exec-java libcommons-httpclient-java 2187s libcommons-io-java libcommons-jexl2-java libcommons-lang-java 2187s libcommons-lang3-java libcommons-logging-java libcommons-math-java 2187s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 2187s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 2187s libdtd-parser-java libel-api-java liberror-prone-java 2187s libexec-maven-plugin-java libfastinfoset-java libfastutil-java 2187s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 2187s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 2187s libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 2187s libgmbal-commons-java libgmbal-java libgmbal-pfl-java libgoogle-gson-java 2187s libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java 2187s libhamcrest-java libharfbuzz0b libhawtjni-runtime-java libhtsjdk-java 2187s libhttpclient-java libhttpcore-java libhttpmime-java libinchi1 2187s libintervalstorej-java libisorelax-java libistack-commons-java 2187s libitext5-java libjaba-client-java libjackson2-annotations-java 2187s libjackson2-core-java libjackson2-databind-java libjansi-java 2187s libjansi-native-java libjansi1-java libjaxb-api-java libjaxb-java 2187s libjaxen-java libjaxrs-api-java libjaxws-api-java libjaxws-java libjbig0 2187s libjersey1-client-java libjersey1-core-java libjetty9-java libjfreesvg-java 2187s libjgrapht-java libjgraphx-java libjheaps-java libjline2-java libjmol-java 2187s libjni-inchi-java libjni-inchi-jni libjpeg-turbo8 libjpeg8 2187s libjson-simple-java libjsoup-java libjsp-api-java libjsr305-java 2187s libjsr311-api-java libjswingreader-java libjws-api-java 2187s libknopflerfish-osgi-framework-java liblcms2-2 liblerc4 liblightcouch-java 2187s libllvm17 liblog4j1.2-java liblog4j2-java libmail-java 2187s libmaven-archiver-java libmaven-compiler-plugin-java 2187s libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java 2187s libmaven-resolver-java libmaven-shared-incremental-java 2187s libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java 2187s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmetro-policy-java 2187s libmiglayout-java libmimepull-java libmjson-java libmmtf-java 2187s libmongodb-java libmsgpack-java libmsv-java libnaga-java libncbi-ngs3 2187s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 2187s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 libplexus-archiver-java 2187s libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java 2187s libplexus-component-annotations-java libplexus-container-default-java 2187s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 2187s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox-java 2187s libqdox2-java librelaxng-datatype-java librhino-java librngom-java 2187s libsaaj-java libsaaj-ri-java libservlet-api-java libsharpyuv0 2187s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 2187s libsnappy-jni libsnappy1v5 libstax-ex-java libstax2-api-java 2187s libstreambuffer-java libthai-data libthai0 libtiff6 libtxw2-java 2187s libvamsas-client-java libvecmath-java libvulkan1 libwagon-http-java 2187s libwagon-provider-api-java libwebp7 libwebsocket-api-java libwoodstox-java 2187s libwsdl4j-java libx11-xcb1 libxbean-reflect-java libxcb-dri2-0 libxcb-dri3-0 2187s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 2187s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 2187s libxerces2-java libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 2187s libxml-commons-resolver1.1-java libxpp3-java libxrandr2 libxrender1 2187s libxshmfence1 libxsom-java libxstream-java libxtst6 libxxf86vm1 libxz-java 2187s ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless ubuntu-mono varna 2187s x11-common 2187s 0 upgraded, 258 newly installed, 0 to remove and 0 not upgraded. 2187s Need to get 211 MB/211 MB of archives. 2187s After this operation, 605 MB of additional disk space will be used. 2187s Get:1 /tmp/autopkgtest.opYCPy/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 2187s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 2187s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 2187s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 2187s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 2187s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 2187s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 2187s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 2187s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 2187s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 2187s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 2187s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 2187s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 2187s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 2187s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 2187s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 2187s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 2187s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 2187s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 2187s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 2187s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 2187s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 2187s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 2187s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 2188s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 2188s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 2188s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 2188s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 2188s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 2188s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 2188s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 2188s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 2188s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 2190s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 2190s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 ant all 1.10.14-1 [2147 kB] 2190s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 ant-optional all 1.10.14-1 [451 kB] 2190s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr-java all 2.7.7+dfsg-13 [452 kB] 2190s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 antlr all 2.7.7+dfsg-13 [5154 B] 2190s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 2190s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 2190s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 2190s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 2190s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 2190s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 2190s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 2190s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 2190s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 2190s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 2190s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 2190s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 2190s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 2190s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 2190s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 2190s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 2190s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 2190s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 2190s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 2190s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 2190s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 2190s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 2190s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 2190s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 2190s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 2190s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 2190s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 2190s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 2190s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 2190s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 2190s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 2190s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 2190s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 2190s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 2190s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 2190s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 2190s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 2190s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 2190s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 2190s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 2192s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 2192s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 2192s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 2192s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 2192s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 2192s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 2192s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 2192s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 2192s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 2192s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 ivy all 2.5.2-1 [1286 kB] 2192s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libhamcrest-java all 2.2-2 [117 kB] 2192s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 junit4 all 4.13.2-4 [347 kB] 2192s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libasm-java all 9.6~us1-0ubuntu1 [386 kB] 2192s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libbsf-java all 1:2.4.0-8 [73.6 kB] 2192s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-cli-java all 1.6.0-1 [59.9 kB] 2192s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 2192s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 2192s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 2192s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi-java all 2.4.1-2 [83.0 kB] 2192s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libhawtjni-runtime-java all 1.18-1 [28.9 kB] 2192s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi-native-java all 1.8-2 [24.1 kB] 2192s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi1-java all 1.18-3ubuntu1 [56.0 kB] 2192s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjline2-java all 2.14.6-5 [150 kB] 2192s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsp-api-java all 2.3.4-3 [53.7 kB] 2192s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libqdox-java all 1.12.1-3 [172 kB] 2193s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libservlet-api-java all 4.0.1-2 [81.0 kB] 2193s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libxpp3-java all 1.1.4c-3 [292 kB] 2193s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libxstream-java all 1.4.20-1 [561 kB] 2193s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 groovy all 2.4.21-10 [10.8 MB] 2193s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-discovery-java all 0.5-4 [70.8 kB] 2193s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libactivation-java all 1.2.0-2 [84.7 kB] 2193s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-api-java all 2.3.1-1 [119 kB] 2193s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libstax-ex-java all 1.7.8-3 [40.9 kB] 2193s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] 2193s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.8 kB] 2193s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libxsom-java all 2.3.0.1-10.1 [397 kB] 2194s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastinfoset-java all 1.2.12-3 [343 kB] 2194s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.2 kB] 2194s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-commons-java all 3.2.1-b003-1.1 [46.6 kB] 2194s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-pfl-java all 4.0.1-b003-2 [1029 kB] 2194s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-java all 4.0.0-b002-1.1 [188 kB] 2194s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libargs4j-java all 2.33-2 [137 kB] 2194s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxen-java all 1.1.6-4 [214 kB] 2194s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 libdom4j-java all 2.1.4-1 [310 kB] 2194s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 2194s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-utils-java all 3.3.4-1 [137 kB] 2194s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] 2194s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 2194s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libaopalliance-java all 20070526-7 [8166 B] 2194s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] 2194s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] 2194s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libguava-java all 32.0.1-1 [2692 kB] 2194s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libguice-java all 4.2.3-2 [1434 kB] 2194s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-parent-java all 35-1 [5810 B] 2194s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-utils2-java all 3.4.2-1 [256 kB] 2194s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-provider-api-java all 3.5.3-1 [47.9 kB] 2194s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-resolver-java all 1.6.3-1 [544 kB] 2194s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-cipher-java all 2.0-1 [14.7 kB] 2194s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-classworlds-java all 2.7.0-1 [50.0 kB] 2194s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-component-annotations-java all 2.1.1-1 [6550 B] 2194s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-interpolation-java all 1.26-1 [76.8 kB] 2194s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-sec-dispatcher-java all 2.0-3 [28.1 kB] 2194s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4fakesync [8616 B] 2194s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 libcdi-api-java all 1.2-3 [54.3 kB] 2194s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 2194s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-inject-java all 0.3.4-2 [347 kB] 2194s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-plexus-java all 0.3.4-3 [181 kB] 2194s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven3-core-java all 3.8.7-2 [1565 kB] 2194s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-io-java all 3.0.0-4 [32.6 kB] 2194s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] 2194s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 2194s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-io-java all 3.3.1-2 [64.4 kB] 2194s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 2194s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 2194s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 2194s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libxz-java all 1.9-1 [140 kB] 2194s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-archiver-java all 4.6.1-1 [185 kB] 2194s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 2194s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 2194s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 2194s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsoup-java all 1.15.3-1 [407 kB] 2194s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-http-java all 3.5.3-1 [48.8 kB] 2194s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 libistack-commons-java all 3.0.6-5 [145 kB] 2194s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 libcodemodel-java all 2.6+jaxb2.3.0.1-10.1 [164 kB] 2194s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 librngom-java all 2.3.0.1-10.1 [289 kB] 2194s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 libtxw2-java all 2.3.0.1-10.1 [133 kB] 2194s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 2194s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 libdtd-parser-java all 1.2-1 [64.9 kB] 2194s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-java all 2.3.0.1-10.1 [1967 kB] 2195s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 libsaaj-java all 1.4.0-4 [38.2 kB] 2195s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxws-api-java all 2.3.0-1.1 [49.9 kB] 2195s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 libjws-api-java all 1.1-2 [21.2 kB] 2195s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 libknopflerfish-osgi-framework-java all 6.1.1-3.1 [642 kB] 2195s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 libisorelax-java all 20041111-14 [63.4 kB] 2195s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 2195s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces2-java all 2.12.2-1 [1430 kB] 2195s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 libmsv-java all 2009.1+dfsg1-6 [760 kB] 2195s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 libstax2-api-java all 4.1-1 [152 kB] 2195s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libwoodstox-java all 1:6.2.1-1 [1122 kB] 2195s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libmetro-policy-java all 2.7.2-3ubuntu1 [171 kB] 2195s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 libmimepull-java all 1.9.7-2 [66.9 kB] 2195s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 libsaaj-ri-java all 1.4.1-1.1 [461 kB] 2195s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxws-java all 2.3.0.2-2 [3046 kB] 2195s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 javahelp2 all 2.0.05.ds1-10 [942 kB] 2195s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 libandroid-json-org-java all 20121204-20090211-5 [35.9 kB] 2195s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-mime4j-java all 0.8.10-1 [442 kB] 2195s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-httpclient-java all 3.1-16 [289 kB] 2195s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libmail-java all 1.6.5-2 [681 kB] 2195s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libwsdl4j-java all 1.6.3-4.1 [184 kB] 2195s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 libaxis-java all 1.4-29 [1499 kB] 2195s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 2195s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 libciftools-java all 5.0.2-1 [2191 kB] 2195s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math-java all 2.2-8 [921 kB] 2195s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libitext5-java all 5.5.13.3-4 [2691 kB] 2195s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-annotations-java all 2.14.0-1 [64.7 kB] 2195s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-core-java all 2.14.1-1 [432 kB] 2195s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-databind-java all 2.14.0-1 [1531 kB] 2196s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr4-runtime-java all 4.9.2-2 [308 kB] 2196s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libapfloat-java all 1.13.0-1 [698 kB] 2196s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-archiver-java all 3.6.0-1 [25.3 kB] 2196s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-jar-plugin-java all 3.3.0-2 [23.9 kB] 2196s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-text-java all 1.11.0-1 [215 kB] 2196s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] 2196s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 libjheaps-java all 0.14-2 [143 kB] 2196s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgraphx-java all 2.1.0.7-3 [801 kB] 2197s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgrapht-java all 1.5.2-1 [1584 kB] 2197s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 libinchi1 arm64 1.03+dfsg-4 [448 kB] 2197s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-jni arm64 0.8+dfsg-7 [10.0 kB] 2197s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-exec-java all 1.3-2 [48.1 kB] 2197s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libexec-maven-plugin-java all 3.1.0-2 [66.1 kB] 2197s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-incremental-java all 1.1-4 [9904 B] 2197s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 2197s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libxbean-reflect-java all 4.5-8 [132 kB] 2197s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-container-default-java all 2.1.1-1 [191 kB] 2197s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-compiler-java all 2.12.1-2 [98.4 kB] 2197s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 libqdox2-java all 2.0.3-1 [296 kB] 2197s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-languages-java all 1.1.1-2 [46.8 kB] 2197s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-compiler-plugin-java all 3.10.1-2 [58.5 kB] 2197s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 2197s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-java all 0.8+dfsg-7 [32.3 kB] 2197s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 libnaga-java all 3.0+svn80-5 [43.5 kB] 2197s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 libjmol-java all 14.32.83+dfsg-3 [8469 kB] 2198s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 libjson-simple-java all 2.3.0-1 [61.0 kB] 2198s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 libmsgpack-java all 0.9.6-1 [159 kB] 2198s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 libmmtf-java all 1.0.11-1 [184 kB] 2198s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 libvecmath-java all 1.5.2-7 [96.9 kB] 2198s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 libbiojava6-java all 6.1.0+dfsg-4 [5330 kB] 2198s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 2198s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 2198s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 2198s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 2198s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 2198s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 2198s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 2198s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 2198s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 2198s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 2198s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 2198s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 2198s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpmime-java all 4.5.14-1 [39.6 kB] 2198s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libintervalstorej-java all 1.2+dfsg-5 [25.8 kB] 2198s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaba-client-java all 2.2.0-2 [400 kB] 2198s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxrs-api-java all 2.1.2-2 [115 kB] 2198s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr311-api-java all 1.1.1-1.1 [46.4 kB] 2198s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 libjersey1-core-java all 1.19.3-8 [390 kB] 2198s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 libjersey1-client-java all 1.19.3-8 [127 kB] 2198s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 libel-api-java all 3.0.0-3 [64.9 kB] 2198s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libwebsocket-api-java all 1.1-2 [40.1 kB] 2198s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 libjetty9-java all 9.4.53-1 [2807 kB] 2198s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 libjfreesvg-java all 4.1-2 [44.1 kB] 2198s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 libjswingreader-java all 0.3-4 [81.5 kB] 2198s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 2198s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 2199s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 2199s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 libmiglayout-java all 11.1+ds-1 [177 kB] 2199s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 libcastor-core-java all 1.3.2-7 [54.1 kB] 2199s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 libcastor-xml-java all 1.3.2-7 [735 kB] 2199s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 libvamsas-client-java all 0.2+dfsg-2 [583 kB] 2199s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 varna all 3-93+ds-5 [796 kB] 2199s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 jalview all 2.11.3.1+dfsg-1 [8735 kB] 2201s Preconfiguring packages ... 2201s Fetched 211 MB in 12s (17.1 MB/s) 2201s Selecting previously unselected package libgdk-pixbuf2.0-common. 2202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75470 files and directories currently installed.) 2202s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 2202s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 2202s Selecting previously unselected package libjpeg-turbo8:arm64. 2202s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 2202s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2202s Selecting previously unselected package libjpeg8:arm64. 2202s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 2202s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 2202s Selecting previously unselected package libdeflate0:arm64. 2202s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 2202s Unpacking libdeflate0:arm64 (1.19-1) ... 2202s Selecting previously unselected package libjbig0:arm64. 2202s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 2202s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 2202s Selecting previously unselected package liblerc4:arm64. 2202s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 2202s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2202s Selecting previously unselected package libsharpyuv0:arm64. 2202s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 2202s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 2202s Selecting previously unselected package libwebp7:arm64. 2202s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 2202s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 2202s Selecting previously unselected package libtiff6:arm64. 2203s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 2203s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2203s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 2203s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 2203s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 2203s Selecting previously unselected package gtk-update-icon-cache. 2203s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 2203s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 2203s Selecting previously unselected package hicolor-icon-theme. 2203s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 2203s Unpacking hicolor-icon-theme (0.17-2) ... 2203s Selecting previously unselected package humanity-icon-theme. 2203s Preparing 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fonts-dejavu-mono (2.37-8) ... 2210s Selecting previously unselected package fonts-dejavu-core. 2210s Preparing to unpack .../023-fonts-dejavu-core_2.37-8_all.deb ... 2210s Unpacking fonts-dejavu-core (2.37-8) ... 2210s Selecting previously unselected package fontconfig-config. 2211s Preparing to unpack .../024-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 2211s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 2211s Selecting previously unselected package libfontconfig1:arm64. 2211s Preparing to unpack .../025-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 2211s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2211s Selecting previously unselected package libasound2-data. 2211s Preparing to unpack .../026-libasound2-data_1.2.10-3build1_all.deb ... 2211s Unpacking libasound2-data (1.2.10-3build1) ... 2212s Selecting previously unselected package libasound2:arm64. 2212s Preparing to unpack .../027-libasound2_1.2.10-3build1_arm64.deb ... 2212s Unpacking libasound2:arm64 (1.2.10-3build1) ... 2212s Selecting previously unselected package libgraphite2-3:arm64. 2212s Preparing to unpack .../028-libgraphite2-3_1.3.14-2_arm64.deb ... 2212s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 2212s Selecting previously unselected package libharfbuzz0b:arm64. 2212s Preparing to unpack .../029-libharfbuzz0b_8.3.0-2_arm64.deb ... 2212s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 2212s Selecting previously unselected package libpcsclite1:arm64. 2212s Preparing to unpack .../030-libpcsclite1_2.0.0-1_arm64.deb ... 2212s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 2212s Selecting previously unselected package openjdk-21-jre-headless:arm64. 2212s Preparing to unpack .../031-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 2212s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 2217s Selecting previously unselected package default-jre-headless. 2217s Preparing to unpack .../032-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 2217s Unpacking default-jre-headless 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.../038-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 2217s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 2217s Selecting previously unselected package libatk1.0-0:arm64. 2217s Preparing to unpack .../039-libatk1.0-0_2.50.0-1_arm64.deb ... 2217s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 2218s Selecting previously unselected package libpixman-1-0:arm64. 2218s Preparing to unpack .../040-libpixman-1-0_0.42.2-1_arm64.deb ... 2218s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 2218s Selecting previously unselected package libxcb-render0:arm64. 2218s Preparing to unpack .../041-libxcb-render0_1.15-1_arm64.deb ... 2218s Unpacking libxcb-render0:arm64 (1.15-1) ... 2218s Selecting previously unselected package libxcb-shm0:arm64. 2218s Preparing to unpack .../042-libxcb-shm0_1.15-1_arm64.deb ... 2218s Unpacking libxcb-shm0:arm64 (1.15-1) ... 2218s Selecting previously unselected package libxrender1:arm64. 2218s Preparing to unpack .../043-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 2218s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 2218s Selecting previously unselected package libcairo2:arm64. 2218s Preparing to unpack .../044-libcairo2_1.18.0-1_arm64.deb ... 2218s Unpacking libcairo2:arm64 (1.18.0-1) ... 2218s Selecting previously unselected package fontconfig. 2218s Preparing to unpack .../045-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 2218s Unpacking fontconfig (2.15.0-1ubuntu1) ... 2218s Selecting previously unselected package libthai-data. 2218s Preparing to unpack .../046-libthai-data_0.1.29-2_all.deb ... 2218s Unpacking libthai-data (0.1.29-2) ... 2218s Selecting previously unselected package libdatrie1:arm64. 2218s Preparing to unpack .../047-libdatrie1_0.2.13-3_arm64.deb ... 2218s Unpacking libdatrie1:arm64 (0.2.13-3) ... 2218s Selecting previously unselected package libthai0:arm64. 2218s Preparing to unpack .../048-libthai0_0.1.29-2_arm64.deb ... 2218s Unpacking libthai0:arm64 (0.1.29-2) ... 2218s Selecting previously unselected package libpango-1.0-0:arm64. 2218s Preparing to unpack .../049-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 2218s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2219s Selecting previously unselected package libpangoft2-1.0-0:arm64. 2219s Preparing to unpack .../050-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 2219s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2219s Selecting previously unselected package libpangocairo-1.0-0:arm64. 2219s Preparing to unpack .../051-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 2219s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2219s Selecting previously unselected package libxcomposite1:arm64. 2219s Preparing to unpack .../052-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 2219s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 2219s Selecting previously unselected package libxfixes3:arm64. 2219s Preparing to unpack .../053-libxfixes3_1%3a6.0.0-2_arm64.deb ... 2219s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 2219s Selecting previously unselected package libxcursor1:arm64. 2219s Preparing to unpack .../054-libxcursor1_1%3a1.2.1-1_arm64.deb ... 2219s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 2219s Selecting previously unselected package libxdamage1:arm64. 2219s Preparing to unpack .../055-libxdamage1_1%3a1.1.6-1_arm64.deb ... 2219s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 2219s Selecting previously unselected package libxi6:arm64. 2219s Preparing to unpack .../056-libxi6_2%3a1.8.1-1_arm64.deb ... 2219s Unpacking libxi6:arm64 (2:1.8.1-1) ... 2219s Selecting previously unselected package libxinerama1:arm64. 2219s Preparing to unpack .../057-libxinerama1_2%3a1.1.4-3_arm64.deb ... 2219s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 2219s Selecting previously unselected package libxrandr2:arm64. 2219s Preparing to unpack .../058-libxrandr2_2%3a1.5.2-2_arm64.deb ... 2219s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 2219s Selecting previously unselected package libgtk2.0-0:arm64. 2219s Preparing to unpack .../059-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 2219s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 2220s Selecting previously unselected package libglvnd0:arm64. 2220s Preparing to unpack .../060-libglvnd0_1.7.0-1_arm64.deb ... 2220s Unpacking libglvnd0:arm64 (1.7.0-1) ... 2220s Selecting previously unselected package libglapi-mesa:arm64. 2220s Preparing to unpack .../061-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 2220s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 2220s Selecting previously unselected package libx11-xcb1:arm64. 2220s Preparing to unpack .../062-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 2220s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 2220s Selecting previously unselected package libxcb-dri2-0:arm64. 2220s Preparing to unpack .../063-libxcb-dri2-0_1.15-1_arm64.deb ... 2220s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 2220s Selecting previously unselected package libxcb-dri3-0:arm64. 2220s Preparing to unpack .../064-libxcb-dri3-0_1.15-1_arm64.deb ... 2220s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 2220s Selecting previously unselected package libxcb-glx0:arm64. 2220s Preparing to unpack .../065-libxcb-glx0_1.15-1_arm64.deb ... 2220s Unpacking libxcb-glx0:arm64 (1.15-1) ... 2220s Selecting previously unselected package libxcb-present0:arm64. 2220s Preparing to unpack .../066-libxcb-present0_1.15-1_arm64.deb ... 2220s Unpacking libxcb-present0:arm64 (1.15-1) ... 2220s Selecting previously unselected package libxcb-randr0:arm64. 2220s Preparing to unpack .../067-libxcb-randr0_1.15-1_arm64.deb ... 2220s Unpacking libxcb-randr0:arm64 (1.15-1) ... 2220s Selecting previously unselected package libxcb-sync1:arm64. 2220s Preparing to unpack .../068-libxcb-sync1_1.15-1_arm64.deb ... 2220s Unpacking libxcb-sync1:arm64 (1.15-1) ... 2221s Selecting previously unselected package libxcb-xfixes0:arm64. 2221s Preparing to unpack .../069-libxcb-xfixes0_1.15-1_arm64.deb ... 2221s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 2221s Selecting previously unselected package libxshmfence1:arm64. 2221s Preparing to unpack .../070-libxshmfence1_1.3-1build4_arm64.deb ... 2221s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 2221s Selecting previously unselected package libxxf86vm1:arm64. 2221s Preparing to unpack .../071-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 2221s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 2221s Selecting previously unselected package libvulkan1:arm64. 2221s Preparing to unpack .../072-libvulkan1_1.3.275.0-1_arm64.deb ... 2221s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 2221s Selecting previously unselected package libdrm-amdgpu1:arm64. 2221s Preparing to unpack .../073-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 2221s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 2221s Selecting previously unselected package libdrm-nouveau2:arm64. 2221s Preparing to unpack .../074-libdrm-nouveau2_2.4.120-2_arm64.deb ... 2221s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 2221s Selecting previously unselected package libdrm-radeon1:arm64. 2221s Preparing to unpack .../075-libdrm-radeon1_2.4.120-2_arm64.deb ... 2221s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 2221s Selecting previously unselected package libllvm17:arm64. 2221s Preparing to unpack .../076-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 2221s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 2224s Selecting previously unselected package libgl1-mesa-dri:arm64. 2224s Preparing to unpack .../077-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 2224s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 2224s Selecting previously unselected package libglx-mesa0:arm64. 2224s Preparing to unpack .../078-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 2224s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 2224s Selecting previously unselected package libglx0:arm64. 2224s Preparing to unpack .../079-libglx0_1.7.0-1_arm64.deb ... 2224s Unpacking libglx0:arm64 (1.7.0-1) ... 2225s Selecting previously unselected package libgl1:arm64. 2225s Preparing to unpack .../080-libgl1_1.7.0-1_arm64.deb ... 2225s Unpacking libgl1:arm64 (1.7.0-1) ... 2225s Selecting previously unselected package libgif7:arm64. 2225s Preparing to unpack .../081-libgif7_5.2.1-2.5_arm64.deb ... 2225s Unpacking libgif7:arm64 (5.2.1-2.5) ... 2225s Selecting previously unselected package x11-common. 2225s Preparing to unpack .../082-x11-common_1%3a7.7+23ubuntu2_all.deb ... 2225s Unpacking x11-common (1:7.7+23ubuntu2) ... 2225s Selecting previously unselected package libxtst6:arm64. 2225s Preparing to unpack .../083-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 2225s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 2225s Selecting previously unselected package openjdk-21-jre:arm64. 2225s Preparing to unpack .../084-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 2225s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 2225s Selecting previously unselected package default-jre. 2225s Preparing to unpack .../085-default-jre_2%3a1.21-75+exp1_arm64.deb ... 2225s Unpacking default-jre (2:1.21-75+exp1) ... 2225s Selecting previously unselected package ivy. 2225s Preparing to unpack .../086-ivy_2.5.2-1_all.deb ... 2225s Unpacking ivy (2.5.2-1) ... 2225s Selecting previously unselected package libhamcrest-java. 2225s Preparing to unpack .../087-libhamcrest-java_2.2-2_all.deb ... 2225s Unpacking libhamcrest-java (2.2-2) ... 2225s Selecting previously unselected package junit4. 2225s Preparing to unpack .../088-junit4_4.13.2-4_all.deb ... 2225s Unpacking junit4 (4.13.2-4) ... 2226s Selecting previously unselected package libasm-java. 2226s Preparing to unpack .../089-libasm-java_9.6~us1-0ubuntu1_all.deb ... 2226s Unpacking libasm-java (9.6~us1-0ubuntu1) ... 2226s Selecting previously unselected package libbsf-java. 2226s Preparing to unpack .../090-libbsf-java_1%3a2.4.0-8_all.deb ... 2226s Unpacking libbsf-java (1:2.4.0-8) ... 2226s Selecting previously unselected package libcommons-cli-java. 2226s Preparing to unpack .../091-libcommons-cli-java_1.6.0-1_all.deb ... 2226s Unpacking libcommons-cli-java (1.6.0-1) ... 2226s Selecting previously unselected package libapache-pom-java. 2226s Preparing to unpack .../092-libapache-pom-java_29-2_all.deb ... 2226s Unpacking libapache-pom-java (29-2) ... 2226s Selecting previously unselected package libcommons-parent-java. 2226s Preparing to unpack .../093-libcommons-parent-java_56-1_all.deb ... 2226s Unpacking libcommons-parent-java (56-1) ... 2226s Selecting previously unselected package libcommons-logging-java. 2226s Preparing to unpack .../094-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 2226s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 2226s Selecting previously unselected package libjansi-java. 2226s Preparing to unpack .../095-libjansi-java_2.4.1-2_all.deb ... 2226s Unpacking libjansi-java (2.4.1-2) ... 2226s Selecting previously unselected package libhawtjni-runtime-java. 2226s Preparing to unpack .../096-libhawtjni-runtime-java_1.18-1_all.deb ... 2226s Unpacking libhawtjni-runtime-java (1.18-1) ... 2226s Selecting previously unselected package libjansi-native-java. 2226s Preparing to unpack .../097-libjansi-native-java_1.8-2_all.deb ... 2226s Unpacking libjansi-native-java (1.8-2) ... 2226s Selecting previously unselected package libjansi1-java. 2226s Preparing to unpack .../098-libjansi1-java_1.18-3ubuntu1_all.deb ... 2226s Unpacking libjansi1-java (1.18-3ubuntu1) ... 2227s Selecting previously unselected package libjline2-java. 2227s Preparing to unpack .../099-libjline2-java_2.14.6-5_all.deb ... 2227s Unpacking libjline2-java (2.14.6-5) ... 2227s Selecting previously unselected package libjsp-api-java. 2227s Preparing to unpack .../100-libjsp-api-java_2.3.4-3_all.deb ... 2227s Unpacking libjsp-api-java (2.3.4-3) ... 2227s Selecting previously unselected package libqdox-java. 2227s Preparing to unpack .../101-libqdox-java_1.12.1-3_all.deb ... 2227s Unpacking libqdox-java (1.12.1-3) ... 2227s Selecting previously unselected package libservlet-api-java. 2227s Preparing to unpack .../102-libservlet-api-java_4.0.1-2_all.deb ... 2227s Unpacking libservlet-api-java (4.0.1-2) ... 2227s Selecting previously unselected package libxpp3-java. 2227s Preparing to unpack .../103-libxpp3-java_1.1.4c-3_all.deb ... 2227s Unpacking libxpp3-java (1.1.4c-3) ... 2227s Selecting previously unselected package libxstream-java. 2227s Preparing to unpack .../104-libxstream-java_1.4.20-1_all.deb ... 2227s Unpacking libxstream-java (1.4.20-1) ... 2227s Selecting previously unselected package groovy. 2227s Preparing to unpack .../105-groovy_2.4.21-10_all.deb ... 2227s Unpacking groovy (2.4.21-10) ... 2228s Selecting previously unselected package libcommons-discovery-java. 2228s Preparing to unpack .../106-libcommons-discovery-java_0.5-4_all.deb ... 2228s Unpacking libcommons-discovery-java (0.5-4) ... 2228s Selecting previously unselected package libactivation-java. 2228s Preparing to unpack .../107-libactivation-java_1.2.0-2_all.deb ... 2228s Unpacking libactivation-java (1.2.0-2) ... 2228s Selecting previously unselected package libjaxb-api-java. 2228s Preparing to unpack .../108-libjaxb-api-java_2.3.1-1_all.deb ... 2228s Unpacking libjaxb-api-java (2.3.1-1) ... 2228s Selecting previously unselected package libstax-ex-java. 2228s Preparing to unpack .../109-libstax-ex-java_1.7.8-3_all.deb ... 2228s Unpacking libstax-ex-java (1.7.8-3) ... 2228s Selecting previously unselected package libstreambuffer-java. 2228s Preparing to unpack .../110-libstreambuffer-java_1.5.4-1.1_all.deb ... 2228s Unpacking libstreambuffer-java (1.5.4-1.1) ... 2229s Selecting previously unselected package librelaxng-datatype-java. 2229s Preparing to unpack .../111-librelaxng-datatype-java_1.0+ds1-3.1_all.deb ... 2229s Unpacking librelaxng-datatype-java (1.0+ds1-3.1) ... 2229s Selecting previously unselected package libxsom-java. 2229s Preparing to unpack .../112-libxsom-java_2.3.0.1-10.1_all.deb ... 2229s Unpacking libxsom-java (2.3.0.1-10.1) ... 2229s Selecting previously unselected package libfastinfoset-java. 2229s Preparing to unpack .../113-libfastinfoset-java_1.2.12-3_all.deb ... 2229s Unpacking libfastinfoset-java (1.2.12-3) ... 2229s Selecting previously unselected package libgeronimo-annotation-1.3-spec-java. 2229s Preparing to unpack .../114-libgeronimo-annotation-1.3-spec-java_1.3-1_all.deb ... 2229s Unpacking libgeronimo-annotation-1.3-spec-java (1.3-1) ... 2229s Selecting previously unselected package libgmbal-commons-java. 2229s Preparing to unpack .../115-libgmbal-commons-java_3.2.1-b003-1.1_all.deb ... 2229s Unpacking libgmbal-commons-java (3.2.1-b003-1.1) ... 2229s Selecting previously unselected package libgmbal-pfl-java. 2229s Preparing to unpack .../116-libgmbal-pfl-java_4.0.1-b003-2_all.deb ... 2229s Unpacking libgmbal-pfl-java (4.0.1-b003-2) ... 2229s Selecting previously unselected package libgmbal-java. 2230s Preparing to unpack .../117-libgmbal-java_4.0.0-b002-1.1_all.deb ... 2230s Unpacking libgmbal-java 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libatinject-jsr330-api-java. 2230s Preparing to unpack .../123-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... 2230s Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... 2230s Selecting previously unselected package libcommons-lang3-java. 2230s Preparing to unpack .../124-libcommons-lang3-java_3.14.0-1_all.deb ... 2230s Unpacking libcommons-lang3-java (3.14.0-1) ... 2230s Selecting previously unselected package libaopalliance-java. 2230s Preparing to unpack .../125-libaopalliance-java_20070526-7_all.deb ... 2230s Unpacking libaopalliance-java (20070526-7) ... 2230s Selecting previously unselected package liberror-prone-java. 2231s Preparing to unpack .../126-liberror-prone-java_2.18.0-1_all.deb ... 2231s Unpacking liberror-prone-java (2.18.0-1) ... 2231s Selecting previously unselected package libjsr305-java. 2231s Preparing to unpack .../127-libjsr305-java_0.1~+svn49-11_all.deb ... 2231s Unpacking libjsr305-java (0.1~+svn49-11) ... 2231s Selecting previously unselected package libguava-java. 2231s Preparing to unpack .../128-libguava-java_32.0.1-1_all.deb ... 2231s Unpacking libguava-java (32.0.1-1) ... 2231s Selecting previously unselected package libguice-java. 2231s Preparing to unpack .../129-libguice-java_4.2.3-2_all.deb ... 2231s Unpacking libguice-java (4.2.3-2) ... 2231s Selecting previously unselected package libmaven-parent-java. 2231s Preparing to unpack .../130-libmaven-parent-java_35-1_all.deb ... 2231s Unpacking libmaven-parent-java (35-1) ... 2231s Selecting previously unselected package libplexus-utils2-java. 2231s Preparing to unpack .../131-libplexus-utils2-java_3.4.2-1_all.deb ... 2231s Unpacking libplexus-utils2-java (3.4.2-1) ... 2231s Selecting previously unselected package libwagon-provider-api-java. 2232s Preparing to unpack .../132-libwagon-provider-api-java_3.5.3-1_all.deb ... 2232s Unpacking libwagon-provider-api-java (3.5.3-1) ... 2232s Selecting previously unselected package libmaven-resolver-java. 2232s Preparing to unpack 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unselected package libplexus-sec-dispatcher-java. 2232s Preparing to unpack .../138-libplexus-sec-dispatcher-java_2.0-3_all.deb ... 2232s Unpacking libplexus-sec-dispatcher-java (2.0-3) ... 2232s Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java. 2232s Preparing to unpack .../139-libgeronimo-interceptor-3.0-spec-java_1.0.1-4fakesync_all.deb ... 2232s Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 2232s Selecting previously unselected package libcdi-api-java. 2232s Preparing to unpack .../140-libcdi-api-java_1.2-3_all.deb ... 2232s Unpacking libcdi-api-java (1.2-3) ... 2233s Selecting previously unselected package libslf4j-java. 2233s Preparing to unpack .../141-libslf4j-java_1.7.32-1_all.deb ... 2233s Unpacking libslf4j-java (1.7.32-1) ... 2233s Selecting previously unselected package libsisu-inject-java. 2233s Preparing to unpack .../142-libsisu-inject-java_0.3.4-2_all.deb ... 2233s Unpacking libsisu-inject-java (0.3.4-2) ... 2233s Selecting previously unselected package libsisu-plexus-java. 2233s Preparing to unpack .../143-libsisu-plexus-java_0.3.4-3_all.deb ... 2233s Unpacking libsisu-plexus-java (0.3.4-3) ... 2233s Selecting previously unselected package libmaven3-core-java. 2233s Preparing to unpack .../144-libmaven3-core-java_3.8.7-2_all.deb ... 2233s Unpacking libmaven3-core-java (3.8.7-2) ... 2233s Selecting previously unselected package libmaven-shared-io-java. 2233s Preparing to unpack .../145-libmaven-shared-io-java_3.0.0-4_all.deb ... 2233s Unpacking libmaven-shared-io-java (3.0.0-4) ... 2233s Selecting previously unselected package libmaven-file-management-java. 2233s Preparing to unpack .../146-libmaven-file-management-java_3.0.0-1_all.deb ... 2233s Unpacking libmaven-file-management-java (3.0.0-1) ... 2233s Selecting previously unselected package libcommons-compress-java. 2233s Preparing to unpack .../147-libcommons-compress-java_1.25.0-1_all.deb ... 2233s Unpacking libcommons-compress-java 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unpack .../153-libplexus-archiver-java_4.6.1-1_all.deb ... 2234s Unpacking libplexus-archiver-java (4.6.1-1) ... 2234s Selecting previously unselected package libhttpcore-java. 2234s Preparing to unpack .../154-libhttpcore-java_4.4.16-1_all.deb ... 2234s Unpacking libhttpcore-java (4.4.16-1) ... 2234s Selecting previously unselected package libcommons-codec-java. 2234s Preparing to unpack .../155-libcommons-codec-java_1.16.0-1_all.deb ... 2234s Unpacking libcommons-codec-java (1.16.0-1) ... 2235s Selecting previously unselected package libhttpclient-java. 2235s Preparing to unpack .../156-libhttpclient-java_4.5.14-1_all.deb ... 2235s Unpacking libhttpclient-java (4.5.14-1) ... 2235s Selecting previously unselected package libjsoup-java. 2235s Preparing to unpack .../157-libjsoup-java_1.15.3-1_all.deb ... 2235s Unpacking libjsoup-java (1.15.3-1) ... 2235s Selecting previously unselected package libwagon-http-java. 2235s Preparing to unpack .../158-libwagon-http-java_3.5.3-1_all.deb ... 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libknopflerfish-osgi-framework-java. 2236s Preparing to unpack .../169-libknopflerfish-osgi-framework-java_6.1.1-3.1_all.deb ... 2236s Unpacking libknopflerfish-osgi-framework-java (6.1.1-3.1) ... 2236s Selecting previously unselected package libisorelax-java. 2236s Preparing to unpack .../170-libisorelax-java_20041111-14_all.deb ... 2236s Unpacking libisorelax-java (20041111-14) ... 2236s Selecting previously unselected package libxml-commons-external-java. 2236s Preparing to unpack .../171-libxml-commons-external-java_1.4.01-6_all.deb ... 2236s Unpacking libxml-commons-external-java (1.4.01-6) ... 2237s Selecting previously unselected package libxerces2-java. 2237s Preparing to unpack .../172-libxerces2-java_2.12.2-1_all.deb ... 2237s Unpacking libxerces2-java (2.12.2-1) ... 2237s Selecting previously unselected package libmsv-java. 2237s Preparing to unpack .../173-libmsv-java_2009.1+dfsg1-6_all.deb ... 2237s Unpacking libmsv-java (2009.1+dfsg1-6) ... 2237s Selecting previously unselected package libstax2-api-java. 2237s Preparing to unpack .../174-libstax2-api-java_4.1-1_all.deb ... 2237s Unpacking libstax2-api-java (4.1-1) ... 2237s Selecting previously unselected package libwoodstox-java. 2237s Preparing to unpack .../175-libwoodstox-java_1%3a6.2.1-1_all.deb ... 2237s Unpacking libwoodstox-java (1:6.2.1-1) ... 2237s Selecting previously unselected package libmetro-policy-java. 2237s Preparing to unpack .../176-libmetro-policy-java_2.7.2-3ubuntu1_all.deb ... 2237s Unpacking libmetro-policy-java (2.7.2-3ubuntu1) ... 2237s Selecting previously unselected package libmimepull-java. 2237s Preparing to unpack .../177-libmimepull-java_1.9.7-2_all.deb ... 2237s Unpacking libmimepull-java (1.9.7-2) ... 2238s Selecting previously unselected package libsaaj-ri-java. 2238s Preparing to unpack .../178-libsaaj-ri-java_1.4.1-1.1_all.deb ... 2238s Unpacking libsaaj-ri-java (1.4.1-1.1) ... 2238s Selecting previously unselected package libjaxws-java. 2238s Preparing to unpack .../179-libjaxws-java_2.3.0.2-2_all.deb ... 2238s Unpacking libjaxws-java (2.3.0.2-2) ... 2238s Selecting previously unselected package javahelp2. 2238s Preparing to unpack .../180-javahelp2_2.0.05.ds1-10_all.deb ... 2238s Unpacking javahelp2 (2.0.05.ds1-10) ... 2238s Selecting previously unselected package libandroid-json-org-java. 2238s Preparing to unpack .../181-libandroid-json-org-java_20121204-20090211-5_all.deb ... 2238s Unpacking libandroid-json-org-java (20121204-20090211-5) ... 2238s Selecting previously unselected package libapache-mime4j-java. 2238s Preparing to unpack .../182-libapache-mime4j-java_0.8.10-1_all.deb ... 2238s Unpacking libapache-mime4j-java (0.8.10-1) ... 2238s Selecting previously unselected package libcommons-httpclient-java. 2238s Preparing to unpack .../183-libcommons-httpclient-java_3.1-16_all.deb ... 2238s Unpacking libcommons-httpclient-java (3.1-16) ... 2239s Selecting previously unselected package libmail-java. 2239s Preparing to unpack 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2239s Selecting previously unselected package libitext5-java. 2239s Preparing to unpack .../190-libitext5-java_5.5.13.3-4_all.deb ... 2239s Unpacking libitext5-java (5.5.13.3-4) ... 2240s Selecting previously unselected package libjackson2-annotations-java. 2240s Preparing to unpack .../191-libjackson2-annotations-java_2.14.0-1_all.deb ... 2240s Unpacking libjackson2-annotations-java (2.14.0-1) ... 2240s Selecting previously unselected package libjackson2-core-java. 2240s Preparing to unpack .../192-libjackson2-core-java_2.14.1-1_all.deb ... 2240s Unpacking libjackson2-core-java (2.14.1-1) ... 2240s Selecting previously unselected package libjackson2-databind-java. 2240s Preparing to unpack .../193-libjackson2-databind-java_2.14.0-1_all.deb ... 2240s Unpacking libjackson2-databind-java (2.14.0-1) ... 2240s Selecting previously unselected package libantlr4-runtime-java. 2240s Preparing to unpack .../194-libantlr4-runtime-java_4.9.2-2_all.deb ... 2240s Unpacking libantlr4-runtime-java 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Selecting previously unselected package libjheaps-java. 2241s Preparing to unpack .../200-libjheaps-java_0.14-2_all.deb ... 2241s Unpacking libjheaps-java (0.14-2) ... 2241s Selecting previously unselected package libjgraphx-java. 2241s Preparing to unpack .../201-libjgraphx-java_2.1.0.7-3_all.deb ... 2241s Unpacking libjgraphx-java (2.1.0.7-3) ... 2241s Selecting previously unselected package libjgrapht-java. 2241s Preparing to unpack .../202-libjgrapht-java_1.5.2-1_all.deb ... 2241s Unpacking libjgrapht-java (1.5.2-1) ... 2242s Selecting previously unselected package libinchi1. 2242s Preparing to unpack .../203-libinchi1_1.03+dfsg-4_arm64.deb ... 2242s Unpacking libinchi1 (1.03+dfsg-4) ... 2242s Selecting previously unselected package libjni-inchi-jni. 2242s Preparing to unpack .../204-libjni-inchi-jni_0.8+dfsg-7_arm64.deb ... 2242s Unpacking libjni-inchi-jni (0.8+dfsg-7) ... 2242s Selecting previously unselected package libcommons-exec-java. 2242s Preparing to unpack .../205-libcommons-exec-java_1.3-2_all.deb ... 2242s Unpacking libcommons-exec-java (1.3-2) ... 2242s Selecting previously unselected package libexec-maven-plugin-java. 2242s Preparing to unpack .../206-libexec-maven-plugin-java_3.1.0-2_all.deb ... 2242s Unpacking libexec-maven-plugin-java (3.1.0-2) ... 2242s Selecting previously unselected package libmaven-shared-incremental-java. 2242s Preparing to unpack .../207-libmaven-shared-incremental-java_1.1-4_all.deb ... 2242s Unpacking libmaven-shared-incremental-java (1.1-4) ... 2242s Selecting previously unselected package libcommons-lang-java. 2242s Preparing to unpack .../208-libcommons-lang-java_2.6-10_all.deb ... 2242s Unpacking libcommons-lang-java (2.6-10) ... 2242s Selecting previously unselected package libxbean-reflect-java. 2242s Preparing to unpack .../209-libxbean-reflect-java_4.5-8_all.deb ... 2242s Unpacking libxbean-reflect-java (4.5-8) ... 2242s Selecting previously unselected package libplexus-container-default-java. 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package liblog4j1.2-java. 2243s Preparing to unpack .../215-liblog4j1.2-java_1.2.17-11_all.deb ... 2243s Unpacking liblog4j1.2-java (1.2.17-11) ... 2243s Selecting previously unselected package libjni-inchi-java. 2243s Preparing to unpack .../216-libjni-inchi-java_0.8+dfsg-7_all.deb ... 2243s Unpacking libjni-inchi-java (0.8+dfsg-7) ... 2243s Selecting previously unselected package libnaga-java. 2243s Preparing to unpack .../217-libnaga-java_3.0+svn80-5_all.deb ... 2243s Unpacking libnaga-java (3.0+svn80-5) ... 2244s Selecting previously unselected package libjmol-java. 2244s Preparing to unpack .../218-libjmol-java_14.32.83+dfsg-3_all.deb ... 2244s Unpacking libjmol-java (14.32.83+dfsg-3) ... 2244s Selecting previously unselected package libjson-simple-java. 2244s Preparing to unpack .../219-libjson-simple-java_2.3.0-1_all.deb ... 2244s Unpacking libjson-simple-java (2.3.0-1) ... 2244s Selecting previously unselected package libmsgpack-java. 2244s Preparing to unpack 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... 2245s Selecting previously unselected package libmbedcrypto7:arm64. 2245s Preparing to unpack .../226-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 2245s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 2245s Selecting previously unselected package libmbedx509-1:arm64. 2245s Preparing to unpack .../227-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 2245s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 2245s Selecting previously unselected package libmbedtls14:arm64. 2245s Preparing to unpack .../228-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 2245s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 2246s Selecting previously unselected package ncbi-vdb-data. 2246s Preparing to unpack .../229-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 2246s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 2246s Selecting previously unselected package libncbi-vdb3:arm64. 2246s Preparing to unpack .../230-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 2246s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 2246s Selecting previously unselected package libncbi-ngs3:arm64. 2246s Preparing to unpack .../231-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2246s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 2246s Selecting previously unselected package libngs-jni:arm64. 2246s Preparing to unpack .../232-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2246s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 2246s Selecting previously unselected package libngs-java:arm64. 2246s Preparing to unpack .../233-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2246s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 2246s Selecting previously unselected package librhino-java. 2246s Preparing to unpack .../234-librhino-java_1.7.14-2.1_all.deb ... 2246s Unpacking librhino-java (1.7.14-2.1) ... 2246s Selecting previously unselected package libhtsjdk-java. 2246s Preparing to unpack .../235-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 2246s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 2246s Selecting previously unselected package libhttpmime-java. 2246s Preparing to unpack .../236-libhttpmime-java_4.5.14-1_all.deb ... 2246s Unpacking libhttpmime-java (4.5.14-1) ... 2246s Selecting previously unselected package libintervalstorej-java. 2247s Preparing to unpack .../237-libintervalstorej-java_1.2+dfsg-5_all.deb ... 2247s Unpacking libintervalstorej-java (1.2+dfsg-5) ... 2247s Selecting previously unselected package libjaba-client-java. 2247s Preparing to unpack .../238-libjaba-client-java_2.2.0-2_all.deb ... 2247s Unpacking libjaba-client-java (2.2.0-2) ... 2247s Selecting previously unselected package libjaxrs-api-java. 2247s Preparing to unpack .../239-libjaxrs-api-java_2.1.2-2_all.deb ... 2247s Unpacking libjaxrs-api-java (2.1.2-2) ... 2247s Selecting previously unselected package libjsr311-api-java. 2247s Preparing to unpack .../240-libjsr311-api-java_1.1.1-1.1_all.deb ... 2247s Unpacking libjsr311-api-java (1.1.1-1.1) ... 2247s Selecting previously unselected package libjersey1-core-java. 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libatinject-jsr330-api-java (1.0+ds1-5) ... 2252s Setting up libwebsocket-api-java (1.1-2) ... 2252s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 2252s Setting up libplexus-interpolation-java (1.26-1) ... 2252s Setting up fonts-dejavu-mono (2.37-8) ... 2252s Setting up libitext5-java (5.5.13.3-4) ... 2252s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 2252s Setting up libxz-java (1.9-1) ... 2252s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 2252s Setting up fonts-dejavu-core (2.37-8) ... 2252s Setting up libpcsclite1:arm64 (2.0.0-1) ... 2252s Setting up libintervalstorej-java (1.2+dfsg-5) ... 2252s Setting up libmongodb-java (3.6.3-2) ... 2252s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2252s Setting up libisorelax-java (20041111-14) ... 2252s Setting up libactivation-java (1.2.0-2) ... 2252s Setting up libhamcrest-java (2.2-2) ... 2252s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 2252s Setting up libjsp-api-java (2.3.4-3) ... 2252s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 2252s Setting up libmimepull-java (1.9.7-2) ... 2252s Setting up libapfloat-java (1.13.0-1) ... 2252s Setting up libwebp7:arm64 (1.3.2-0.4) ... 2252s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 2252s Setting up libgif7:arm64 (5.2.1-2.5) ... 2252s Setting up libjfreesvg-java (4.1-2) ... 2252s Setting up libxshmfence1:arm64 (1.3-1build4) ... 2252s Setting up libjsoup-java (1.15.3-1) ... 2252s Setting up libmail-java (1.6.5-2) ... 2252s Setting up at-spi2-common (2.50.0-1) ... 2252s Setting up libcommons-math-java (2.2-8) ... 2252s Setting up libxcb-randr0:arm64 (1.15-1) ... 2252s Setting up libxml-commons-external-java (1.4.01-6) ... 2252s Setting up libxbean-reflect-java (4.5-8) ... 2252s Setting up libasound2:arm64 (1.2.10-3build1) ... 2252s Setting up libservlet-api-java (4.0.1-2) ... 2252s Setting up libjackson2-core-java (2.14.1-1) ... 2252s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 2252s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 2252s Setting up libthai-data (0.1.29-2) ... 2252s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 2252s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 2252s Setting up libhttpcore-java (4.4.16-1) ... 2252s Setting up ca-certificates-java (20240118) ... 2252s No JRE found. 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Setting up libjetty9-java (9.4.53-1) ... 2252s Setting up libjersey1-client-java (1.19.3-8) ... 2252s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 2252s Setting up libplexus-languages-java (1.1.1-2) ... 2252s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 2252s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 2253s Setting up libstax-ex-java (1.7.8-3) ... 2253s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 2253s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 2253s Setting up libmaven-parent-java (35-1) ... 2253s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 2253s Setting up libcommons-parent-java (56-1) ... 2253s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 2253s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 2253s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 2253s Setting up libsisu-inject-java (0.3.4-2) ... 2253s Setting up libciftools-java (5.0.2-1) ... 2253s Setting up libjaxws-api-java (2.3.0-1.1) ... 2253s Setting up libcommons-lang-java (2.6-10) ... 2253s Setting up libjackson2-databind-java (2.14.0-1) ... 2253s Setting up libplexus-cipher-java (2.0-1) ... 2253s Setting up libcastor-core-java (1.3.2-7) ... 2253s Setting up libcommons-jexl2-java (2.1.1-6) ... 2253s Setting up libthai0:arm64 (0.1.29-2) ... 2253s Setting up libsisu-plexus-java (0.3.4-3) ... 2253s Setting up libcastor-xml-java (1.3.2-7) ... 2253s Setting up libstreambuffer-java (1.5.4-1.1) ... 2253s Setting up libjswingreader-java (0.3-4) ... 2253s Setting up libcommons-discovery-java (0.5-4) ... 2253s Setting up libcommons-lang3-java (3.14.0-1) ... 2253s Setting up librngom-java (2.3.0.1-10.1) ... 2253s Setting up libjni-inchi-jni (0.8+dfsg-7) ... 2253s Setting up libjansi-native-java (1.8-2) ... 2253s Setting up libjgraphx-java (2.1.0.7-3) ... 2253s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2253s Setting up libjansi1-java (1.18-3ubuntu1) ... 2253s Setting up libplexus-sec-dispatcher-java (2.0-3) ... 2253s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 2253s Setting up libsnappy-java (1.1.10.5-1) ... 2253s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2253s Setting up libxsom-java (2.3.0.1-10.1) ... 2253s Setting up libcommons-codec-java (1.16.0-1) ... 2253s Setting up libjline2-java (2.14.6-5) ... 2253s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 2253s Setting up libsaaj-ri-java (1.4.1-1.1) ... 2253s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 2253s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 2253s Setting up fontconfig (2.15.0-1ubuntu1) ... 2255s Regenerating fonts cache... done. 2255s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 2255s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 2255s Setting up libglx0:arm64 (1.7.0-1) ... 2255s Setting up libcommons-compress-java (1.25.0-1) ... 2255s Setting up libcommons-io-java (2.11.0-2) ... 2255s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2255s Setting up libvamsas-client-java (0.2+dfsg-2) ... 2255s Setting up libcairo2:arm64 (1.18.0-1) ... 2255s Setting up libmaven-resolver-java (1.6.3-1) ... 2255s Setting up libgl1:arm64 (1.7.0-1) ... 2255s Setting up libcommons-httpclient-java (3.1-16) ... 2255s Setting up libaxis-java (1.4-29) ... 2255s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 2255s Setting up libhttpclient-java (4.5.14-1) ... 2255s Setting up liblightcouch-java (0.2.0-1) ... 2255s Setting up libwagon-http-java (3.5.3-1) ... 2255s Setting up libmaven-shared-utils-java (3.3.4-1) ... 2255s Setting up libfastinfoset-java (1.2.12-3) ... 2255s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 2255s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2255s Setting up libapache-mime4j-java (0.8.10-1) ... 2255s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 2255s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2255s Setting up libplexus-io-java (3.3.1-2) ... 2255s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 2255s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 2255s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 2255s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 2255s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 2255s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 2255s Setting up liblog4j2-java (2.19.0-2) ... 2255s Setting up libhttpmime-java (4.5.14-1) ... 2255s Setting up libplexus-archiver-java (4.6.1-1) ... 2255s Setting up libmaven-archiver-java (3.6.0-1) ... 2255s Setting up adwaita-icon-theme (46~rc-1) ... 2255s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 2255s Setting up liberror-prone-java (2.18.0-1) ... 2255s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 2255s Setting up humanity-icon-theme (0.6.16) ... 2256s Setting up libguava-java (32.0.1-1) ... 2256s Setting up libplexus-container-default-java (2.1.1-1) ... 2256s Setting up ubuntu-mono (24.04-0ubuntu1) ... 2256s Setting up libguice-java (4.2.3-2) ... 2256s Setting up libmaven3-core-java (3.8.7-2) ... 2256s Setting up libmaven-shared-incremental-java (1.1-4) ... 2256s Setting up libmaven-shared-io-java (3.0.0-4) ... 2256s Setting up libplexus-compiler-java (2.12.1-2) ... 2256s Setting up libmaven-compiler-plugin-java (3.10.1-2) ... 2256s Setting up libjni-inchi-java (0.8+dfsg-7) ... 2256s Setting up libmaven-file-management-java (3.0.0-1) ... 2256s Setting up libjmol-java (14.32.83+dfsg-3) ... 2256s Setting up libmaven-jar-plugin-java (3.3.0-2) ... 2256s Setting up libcommons-text-java (1.11.0-1) ... 2256s Setting up libmsgpack-java (0.9.6-1) ... 2256s Setting up libmmtf-java (1.0.11-1) ... 2256s Setting up libjgrapht-java (1.5.2-1) ... 2256s Processing triggers for libc-bin (2.39-0ubuntu6) ... 2256s Processing triggers for man-db (2.12.0-3) ... 2258s Processing triggers for shared-mime-info (2.4-1) ... 2260s Processing triggers for ca-certificates-java (20240118) ... 2261s Adding debian:ACCVRAIZ1.pem 2261s Adding debian:AC_RAIZ_FNMT-RCM.pem 2261s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 2261s Adding debian:ANF_Secure_Server_Root_CA.pem 2261s Adding debian:Actalis_Authentication_Root_CA.pem 2261s Adding debian:AffirmTrust_Commercial.pem 2261s Adding debian:AffirmTrust_Networking.pem 2261s Adding debian:AffirmTrust_Premium.pem 2261s Adding debian:AffirmTrust_Premium_ECC.pem 2261s Adding debian:Amazon_Root_CA_1.pem 2261s Adding debian:Amazon_Root_CA_2.pem 2261s Adding debian:Amazon_Root_CA_3.pem 2261s Adding debian:Amazon_Root_CA_4.pem 2261s Adding debian:Atos_TrustedRoot_2011.pem 2261s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 2261s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 2261s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 2261s Adding debian:BJCA_Global_Root_CA1.pem 2261s Adding debian:BJCA_Global_Root_CA2.pem 2261s Adding debian:Baltimore_CyberTrust_Root.pem 2261s Adding debian:Buypass_Class_2_Root_CA.pem 2261s Adding debian:Buypass_Class_3_Root_CA.pem 2261s Adding debian:CA_Disig_Root_R2.pem 2261s Adding debian:CFCA_EV_ROOT.pem 2261s Adding debian:COMODO_Certification_Authority.pem 2261s Adding debian:COMODO_ECC_Certification_Authority.pem 2261s Adding debian:COMODO_RSA_Certification_Authority.pem 2261s Adding debian:Certainly_Root_E1.pem 2261s Adding debian:Certainly_Root_R1.pem 2261s Adding debian:Certigna.pem 2261s Adding debian:Certigna_Root_CA.pem 2261s Adding debian:Certum_EC-384_CA.pem 2261s Adding debian:Certum_Trusted_Network_CA.pem 2261s Adding debian:Certum_Trusted_Network_CA_2.pem 2262s Adding debian:Certum_Trusted_Root_CA.pem 2262s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 2262s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 2262s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 2262s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 2262s Adding debian:Comodo_AAA_Services_root.pem 2262s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 2262s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 2262s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 2262s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 2262s Adding debian:DigiCert_Assured_ID_Root_CA.pem 2262s Adding debian:DigiCert_Assured_ID_Root_G2.pem 2262s Adding debian:DigiCert_Assured_ID_Root_G3.pem 2262s Adding debian:DigiCert_Global_Root_CA.pem 2262s Adding debian:DigiCert_Global_Root_G2.pem 2262s Adding debian:DigiCert_Global_Root_G3.pem 2262s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 2262s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 2262s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 2262s Adding debian:DigiCert_Trusted_Root_G4.pem 2262s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 2262s Adding debian:Entrust_Root_Certification_Authority.pem 2262s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 2262s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 2262s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 2262s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 2262s Adding debian:GLOBALTRUST_2020.pem 2262s Adding debian:GTS_Root_R1.pem 2262s Adding debian:GTS_Root_R2.pem 2262s Adding debian:GTS_Root_R3.pem 2262s Adding debian:GTS_Root_R4.pem 2262s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 2262s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 2262s Adding debian:GlobalSign_Root_CA.pem 2262s Adding debian:GlobalSign_Root_CA_-_R3.pem 2262s Adding debian:GlobalSign_Root_CA_-_R6.pem 2262s Adding debian:GlobalSign_Root_E46.pem 2262s Adding debian:GlobalSign_Root_R46.pem 2262s Adding debian:Go_Daddy_Class_2_CA.pem 2262s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 2262s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 2262s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 2262s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 2262s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 2262s Adding debian:HiPKI_Root_CA_-_G1.pem 2262s Adding debian:Hongkong_Post_Root_CA_3.pem 2262s Adding debian:ISRG_Root_X1.pem 2262s Adding debian:ISRG_Root_X2.pem 2262s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 2262s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 2262s Adding debian:Izenpe.com.pem 2262s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 2262s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 2262s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 2262s Adding debian:NAVER_Global_Root_Certification_Authority.pem 2262s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 2262s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 2262s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 2262s Adding debian:QuoVadis_Root_CA_1_G3.pem 2262s Adding debian:QuoVadis_Root_CA_2.pem 2262s Adding debian:QuoVadis_Root_CA_2_G3.pem 2262s Adding debian:QuoVadis_Root_CA_3.pem 2262s Adding debian:QuoVadis_Root_CA_3_G3.pem 2262s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 2262s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 2262s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 2262s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 2262s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 2262s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 2263s Adding debian:SZAFIR_ROOT_CA2.pem 2263s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 2263s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 2263s Adding debian:SecureSign_RootCA11.pem 2263s Adding debian:SecureTrust_CA.pem 2263s Adding debian:Secure_Global_CA.pem 2263s Adding debian:Security_Communication_ECC_RootCA1.pem 2263s Adding debian:Security_Communication_RootCA2.pem 2263s Adding debian:Security_Communication_RootCA3.pem 2263s Adding debian:Security_Communication_Root_CA.pem 2263s Adding debian:Starfield_Class_2_CA.pem 2263s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 2263s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 2263s Adding debian:SwissSign_Gold_CA_-_G2.pem 2263s Adding debian:SwissSign_Silver_CA_-_G2.pem 2263s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 2263s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 2263s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 2263s Adding debian:TWCA_Global_Root_CA.pem 2263s Adding debian:TWCA_Root_Certification_Authority.pem 2263s Adding debian:TeliaSonera_Root_CA_v1.pem 2263s Adding debian:Telia_Root_CA_v2.pem 2263s Adding debian:TrustAsia_Global_Root_CA_G3.pem 2263s Adding debian:TrustAsia_Global_Root_CA_G4.pem 2263s Adding debian:Trustwave_Global_Certification_Authority.pem 2263s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 2263s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 2263s Adding debian:TunTrust_Root_CA.pem 2263s Adding debian:UCA_Extended_Validation_Root.pem 2263s Adding debian:UCA_Global_G2_Root.pem 2263s Adding debian:USERTrust_ECC_Certification_Authority.pem 2263s Adding debian:USERTrust_RSA_Certification_Authority.pem 2263s Adding debian:XRamp_Global_CA_Root.pem 2263s Adding debian:certSIGN_ROOT_CA.pem 2263s Adding debian:certSIGN_Root_CA_G2.pem 2263s Adding debian:e-Szigno_Root_CA_2017.pem 2263s Adding debian:ePKI_Root_Certification_Authority.pem 2263s Adding debian:emSign_ECC_Root_CA_-_C3.pem 2263s Adding debian:emSign_ECC_Root_CA_-_G3.pem 2263s Adding debian:emSign_Root_CA_-_C1.pem 2263s Adding debian:emSign_Root_CA_-_G1.pem 2263s Adding debian:vTrus_ECC_Root_CA.pem 2263s Adding debian:vTrus_Root_CA.pem 2263s done. 2263s Setting up ant (1.10.14-1) ... 2263s Setting up libmsv-java (2009.1+dfsg1-6) ... 2263s Setting up junit4 (4.13.2-4) ... 2263s Setting up default-jre-headless (2:1.21-75+exp1) ... 2263s Setting up varna (3-93+ds-5) ... 2263s Setting up ant-optional (1.10.14-1) ... 2263s Setting up libwoodstox-java (1:6.2.1-1) ... 2263s Setting up antlr (2.7.7+dfsg-13) ... 2263s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 2263s Setting up ivy (2.5.2-1) ... 2263s Setting up javahelp2 (2.0.05.ds1-10) ... 2263s Setting up groovy (2.4.21-10) ... 2263s update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode 2263s update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode 2263s update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode 2263s update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode 2263s update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode 2263s update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode 2263s update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode 2263s update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode 2263s Setting up libistack-commons-java (3.0.6-5) ... 2263s Setting up default-jre (2:1.21-75+exp1) ... 2263s Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 2263s Setting up libtxw2-java (2.3.0.1-10.1) ... 2263s Setting up libjaxb-java (2.3.0.1-10.1) ... 2263s Setting up libmetro-policy-java (2.7.2-3ubuntu1) ... 2263s Setting up libbiojava6-java (6.1.0+dfsg-4) ... 2263s Setting up libjaba-client-java (2.2.0-2) ... 2263s Setting up libjaxws-java (2.3.0.2-2) ... 2263s Setting up jalview (2.11.3.1+dfsg-1) ... 2264s Setting up autopkgtest-satdep (0) ... 2291s (Reading database ... 94119 files and directories currently installed.) 2291s Removing autopkgtest-satdep (0) ... 2298s autopkgtest [19:00:34]: test jalview-run-unit-test: [----------------------- 2298s Could not obtain JAVA_COMPILE_VERSION for comparison 2298s Could not make Java version check 2300s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (987230208). 2300s Cannot get screen resolution: 2300s No X11 DISPLAY variable was set, 2300s or no headful library support was found, 2300s but this program performed an operation which requires it, 2300s 2300s Cannot get screen size height and width: 2300s No X11 DISPLAY variable was set, 2300s or no headful library support was found, 2300s but this program performed an operation which requires it, 2300s 2302s Java version: 21.0.2 2302s Java home: /usr/lib/jvm/java-21-openjdk-arm64 2302s Java arch: aarch64 Linux 6.8.0-11-generic 2303s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 2303s Falling back to properties file '/home/ubuntu/.jalview_properties' 2303s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 2303s Setting initial log level to INFO 2306s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 2306s SLF4J: Defaulting to no-operation (NOP) logger implementation 2306s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 2307s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (957ms) 2307s INFO - Getting messages for lang: en 2307s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 2308s WARN - Error when running commands 2308s Could not obtain JAVA_COMPILE_VERSION for comparison 2308s Could not make Java version check 2308s CMD [-open uniref50.fa] executed successfully! 2310s Creating EPS file: /tmp/autopkgtest.opYCPy/autopkgtest_tmp/uniref50_out.eps 2311s Output generated in eps format in /tmp/autopkgtest.opYCPy/autopkgtest_tmp/uniref50_out.eps 2311s Could not obtain JAVA_COMPILE_VERSION for comparison 2311s Could not make Java version check 2313s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (987230208). 2313s Cannot get screen resolution: 2313s No X11 DISPLAY variable was set, 2313s or no headful library support was found, 2313s but this program performed an operation which requires it, 2313s 2313s Cannot get screen size height and width: 2313s No X11 DISPLAY variable was set, 2313s or no headful library support was found, 2313s but this program performed an operation which requires it, 2313s 2314s Java version: 21.0.2 2314s Java home: /usr/lib/jvm/java-21-openjdk-arm64 2314s Java arch: aarch64 Linux 6.8.0-11-generic 2315s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 2315s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 2315s Setting initial log level to INFO 2318s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 2318s SLF4J: Defaulting to no-operation (NOP) logger implementation 2318s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 2319s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (1121ms) 2319s INFO - Getting messages for lang: en 2319s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 2320s WARN - Error when running commands 2320s Could not obtain JAVA_COMPILE_VERSION for comparison 2320s Could not make Java version check 2320s CMD [-open uniref50.fa] executed successfully! 2322s Creating HTML image: uniref50_out.html 2322s Exporting alignment as HTML file 2323s java.io.FileNotFoundException: /tmp/autopkgtest.opYCPy/autopkgtest_tmp/examples/javascript/facebox-1.3.js (No such file or directory) 2323s at java.base/java.io.FileInputStream.open0(Native Method) 2323s at java.base/java.io.FileInputStream.open(FileInputStream.java:213) 2323s at java.base/java.io.FileInputStream.(FileInputStream.java:152) 2323s at java.base/java.io.FileInputStream.(FileInputStream.java:106) 2323s at java.base/sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:84) 2323s at java.base/sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:180) 2323s at java.base/java.net.URL.openStream(URL.java:1325) 2323s at jalview.io.HTMLOutput.readFileAsString(HTMLOutput.java:121) 2323s at jalview.io.HtmlSvgOutput.getHtml(HtmlSvgOutput.java:177) 2323s at jalview.io.HtmlSvgOutput.doOutput(HtmlSvgOutput.java:301) 2323s at jalview.io.HtmlSvgOutput.run(HtmlSvgOutput.java:248) 2323s at jalview.io.HTMLOutput.exportHTML(HTMLOutput.java:342) 2323s at jalview.io.HTMLOutput.exportHTML(HTMLOutput.java:308) 2323s at jalview.bin.Jalview.doMain(Jalview.java:1039) 2323s at jalview.bin.Jalview.main(Jalview.java:253) 2323s HTML Export completed 2323s Output generated in html format in /tmp/autopkgtest.opYCPy/autopkgtest_tmp/uniref50_out.html 2323s Could not obtain JAVA_COMPILE_VERSION for comparison 2323s Could not make Java version check 2325s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (987230208). 2325s Cannot get screen resolution: 2325s No X11 DISPLAY variable was set, 2325s or no headful library support was found, 2325s but this program performed an operation which requires it, 2325s 2325s Cannot get screen size height and width: 2325s No X11 DISPLAY variable was set, 2325s or no headful library support was found, 2325s but this program performed an operation which requires it, 2325s 2327s Java version: 21.0.2 2327s Java home: /usr/lib/jvm/java-21-openjdk-arm64 2327s Java arch: aarch64 Linux 6.8.0-11-generic 2328s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 2328s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 2328s Setting initial log level to INFO 2331s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 2331s SLF4J: Defaulting to no-operation (NOP) logger implementation 2331s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 2332s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (1090ms) 2333s INFO - Getting messages for lang: en 2333s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 2333s WARN - Error when running commands 2333s Could not obtain JAVA_COMPILE_VERSION for comparison 2333s Could not make Java version check 2333s CMD [-open uniref50.fa] executed successfully! 2335s Creating PNG image: uniref50_out.png 2336s Output generated in png format in /tmp/autopkgtest.opYCPy/autopkgtest_tmp/uniref50_out.png 2337s autopkgtest [19:01:13]: test jalview-run-unit-test: -----------------------] 2337s autopkgtest [19:01:13]: test jalview-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 2337s jalview-run-unit-test PASS 2338s autopkgtest [19:01:14]: test command1: preparing testbed 2476s autopkgtest [19:03:32]: testbed dpkg architecture: arm64 2476s autopkgtest [19:03:32]: testbed apt version: 2.7.12 2476s autopkgtest [19:03:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 2477s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 2478s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 2478s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 2479s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 2479s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 2479s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 2479s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 2479s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 2479s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 2479s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 2479s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 2479s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 2479s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 2489s Fetched 9848 kB in 5s (1905 kB/s) 2490s Reading package lists... 2495s Reading package lists... 2496s Building dependency tree... 2496s Reading state information... 2498s Calculating upgrade... 2499s The following packages will be REMOVED: 2499s libmagic1 libssl3 2499s The following NEW packages will be installed: 2499s libmagic1t64 libssl3t64 2499s The following packages have been kept back: 2499s curl 2499s The following packages will be upgraded: 2499s file libmagic-mgc openssl 2499s 3 upgraded, 2 newly installed, 2 to remove and 1 not upgraded. 2499s Need to get 3192 kB of archives. 2499s After this operation, 145 kB of additional disk space will be used. 2499s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 2499s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 2500s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 2500s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 2500s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 2501s Fetched 3192 kB in 1s (3987 kB/s) 2502s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 2502s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 2502s Unpacking file (1:5.45-3) over (1:5.45-2) ... 2502s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 2502s Removing libmagic1:arm64 (1:5.45-2) ... 2502s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 2502s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 2502s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 2502s Selecting previously unselected package libmagic1t64:arm64. 2502s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 2502s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 2503s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 2503s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 2503s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 2503s wget depends on libssl3 (>= 3.0.0). 2503s u-boot-tools depends on libssl3 (>= 3.0.0). 2503s tnftp depends on libssl3 (>= 3.0.0). 2503s tcpdump depends on libssl3 (>= 3.0.0). 2503s systemd-resolved depends on libssl3 (>= 3.0.0). 2503s systemd depends on libssl3 (>= 3.0.0). 2503s sudo depends on libssl3 (>= 3.0.0). 2503s sbsigntool depends on libssl3 (>= 3.0.0). 2503s rsync depends on libssl3 (>= 3.0.0). 2503s python3-cryptography depends on libssl3 (>= 3.0.0). 2503s openssh-server depends on libssl3 (>= 3.0.10). 2503s openssh-client depends on libssl3 (>= 3.0.10). 2503s mtd-utils depends on libssl3 (>= 3.0.0). 2503s mokutil depends on libssl3 (>= 3.0.0). 2503s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 2503s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 2503s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 2503s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 2503s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 2503s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 2503s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 2503s libnvme1 depends on libssl3 (>= 3.0.0). 2503s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 2503s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 2503s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 2503s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 2503s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 2503s kmod depends on libssl3 (>= 3.0.0). 2503s dhcpcd-base depends on libssl3 (>= 3.0.0). 2503s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 2503s 2503s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 2503s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 2503s Selecting previously unselected package libssl3t64:arm64. 2503s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 2503s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 2503s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 2504s Setting up libmagic-mgc (1:5.45-3) ... 2504s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 2504s Setting up libmagic1t64:arm64 (1:5.45-3) ... 2504s Setting up file (1:5.45-3) ... 2504s Setting up openssl (3.0.13-0ubuntu2) ... 2504s Processing triggers for man-db (2.12.0-3) ... 2505s Processing triggers for libc-bin (2.39-0ubuntu6) ... 2506s Reading package lists... 2507s Building dependency tree... 2507s Reading state information... 2509s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 2511s sh: Attempting to set up Debian/Ubuntu apt sources automatically 2511s sh: Distribution appears to be Ubuntu 2513s Reading package lists... 2514s Building dependency tree... 2514s Reading state information... 2516s eatmydata is already the newest version (131-1). 2516s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2516s Reading package lists... 2517s Building dependency tree... 2517s Reading state information... 2519s dbus is already the newest version (1.14.10-4ubuntu1). 2519s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2519s Reading package lists... 2519s Building dependency tree... 2519s Reading state information... 2521s rng-tools-debian is already the newest version (2.4). 2521s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2521s Reading package lists... 2522s Building dependency tree... 2522s Reading state information... 2524s The following packages will be REMOVED: 2524s cloud-init* python3-configobj* python3-debconf* 2525s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 2525s After this operation, 3256 kB disk space will be freed. 2525s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 2525s Removing cloud-init (24.1.2-0ubuntu1) ... 2527s Removing python3-configobj (5.0.8-3) ... 2527s Removing python3-debconf (1.5.86) ... 2528s Processing triggers for man-db (2.12.0-3) ... 2528s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75525 files and directories currently installed.) 2528s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 2531s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 2531s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 2531s invoke-rc.d: policy-rc.d denied execution of try-restart. 2532s Reading package lists... 2532s Building dependency tree... 2532s Reading state information... 2534s linux-generic is already the newest version (6.8.0-11.11+1). 2534s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2535s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 2535s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 2535s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 2545s Reading package lists... 2545s Reading package lists... 2546s Building dependency tree... 2546s Reading state information... 2547s Calculating upgrade... 2548s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2548s Reading package lists... 2549s Building dependency tree... 2549s Reading state information... 2551s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2551s autopkgtest [19:04:47]: rebooting testbed after setup commands that affected boot 2722s Reading package lists... 2723s Building dependency tree... 2723s Reading state information... 2724s Starting pkgProblemResolver with broken count: 0 2724s Starting 2 pkgProblemResolver with broken count: 0 2724s Done 2726s The following additional packages will be installed: 2726s adwaita-icon-theme ant at-spi2-common ca-certificates-java default-jre 2726s default-jre-headless fontconfig fontconfig-config fonts-dejavu-core 2726s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 2726s humanity-icon-theme igv java-common java-wrappers libapache-pom-java 2726s libasound2 libasound2-data libatinject-jsr330-api-java libatk1.0-0 2726s libavahi-client3 libavahi-common-data libavahi-common3 libbatik-java 2726s libcairo2 libcolt-free-java libcommons-beanutils-java libcommons-codec-java 2726s libcommons-collections3-java libcommons-compress-java 2726s libcommons-configuration-java libcommons-io-java libcommons-jexl2-java 2726s libcommons-lang-java libcommons-lang3-java libcommons-logging-java 2726s libcommons-math3-java libcommons-parent-java libcups2 libdatrie1 libdeflate0 2726s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libdsiutils-java 2726s liberror-prone-java libfastutil-java libfontconfig1 libgdk-pixbuf-2.0-0 2726s libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa 2726s libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 2726s libgtk2.0-0 libgtk2.0-common libguava-java libharfbuzz0b libhtsjdk-java 2726s libhttpclient-java libhttpcore-java libicb-utils-java libicu4j-java 2726s libjaxp1.3-java libjbig0 libjide-oss-java libjpeg-turbo8 libjpeg8 2726s libjsap-java libjsr305-java liblcms2-2 liblerc4 liblightcouch-java libllvm17 2726s liblog4j1.2-java liblog4j2-java liblogback-java libmbedcrypto7 libmbedtls14 2726s libmbedx509-1 libmjson-java libmongodb-java libnb-absolutelayout-java 2726s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 2726s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 2726s libprotobuf-java librhino-java libsharpyuv0 libslf4j-java libsnappy-java 2726s libsnappy-jni libsnappy1v5 libswing-layout-java libthai-data libthai0 2726s libtiff6 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 2726s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 2726s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 2726s libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 2726s libxmlgraphics-commons-java libxpp3-java libxrandr2 libxrender1 2726s libxshmfence1 libxstream-java libxtst6 libxxf86vm1 ncbi-vdb-data 2726s openjdk-21-jre openjdk-21-jre-headless ubuntu-mono unzip x11-common 2726s Suggested packages: 2726s ant-doc default-jdk | java-compiler | java-sdk libasound2-plugins alsa-utils 2726s libatinject-jsr330-api-java-doc libcommons-collections3-java-doc libasm-java 2726s libxz-java libcommons-digester-java libcommons-jxpath-java 2726s libcommons-vfs-java libxml-commons-resolver1.1-java libcommons-io-java-doc 2726s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 2726s cups-common libgoogle-gson-java-doc gvfs picard-tools libjide-oss-java-doc 2726s libjsap-java-doc libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc 2726s libmail-java libactivation-java libcommons-csv-java 2726s libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java 2726s libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjansi-java 2726s libjctools-java libjeromq-java libwoodstox-java libjanino-java 2726s libjetty9-java libservlet-api-java libtomcat9-java libngs-java-doc pcscd 2726s rhino libswing-layout-java-doc libxmlgraphics-commons-java-doc 2726s libcglib-nodep-java libdom4j-java libjdom1-java libjdom2-java 2726s libjettison-java libjoda-time-java libkxml2-java libxom-java libnss-mdns 2726s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 2726s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic zip 2726s Recommended packages: 2726s librsvg2-common ant-optional libmariadb-java alsa-ucm-conf 2726s alsa-topology-conf libgdk-pixbuf2.0-bin libgl1-amber-dri libgail-common 2726s libgtk2.0-bin mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni 2726s fonts-dejavu-extra 2726s The following NEW packages will be installed: 2726s adwaita-icon-theme ant at-spi2-common autopkgtest-satdep 2726s ca-certificates-java default-jre default-jre-headless fontconfig 2726s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 2726s hicolor-icon-theme humanity-icon-theme igv java-common java-wrappers 2726s libapache-pom-java libasound2 libasound2-data libatinject-jsr330-api-java 2726s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 2726s libbatik-java libcairo2 libcolt-free-java libcommons-beanutils-java 2726s libcommons-codec-java libcommons-collections3-java libcommons-compress-java 2726s libcommons-configuration-java libcommons-io-java libcommons-jexl2-java 2726s libcommons-lang-java libcommons-lang3-java libcommons-logging-java 2726s libcommons-math3-java libcommons-parent-java libcups2 libdatrie1 libdeflate0 2726s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libdsiutils-java 2726s liberror-prone-java libfastutil-java libfontconfig1 libgdk-pixbuf-2.0-0 2726s libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa 2726s libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 2726s libgtk2.0-0 libgtk2.0-common libguava-java libharfbuzz0b libhtsjdk-java 2726s libhttpclient-java libhttpcore-java libicb-utils-java libicu4j-java 2726s libjaxp1.3-java libjbig0 libjide-oss-java libjpeg-turbo8 libjpeg8 2726s libjsap-java libjsr305-java liblcms2-2 liblerc4 liblightcouch-java libllvm17 2726s liblog4j1.2-java liblog4j2-java liblogback-java libmbedcrypto7 libmbedtls14 2726s libmbedx509-1 libmjson-java libmongodb-java libnb-absolutelayout-java 2726s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 2726s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 2726s libprotobuf-java librhino-java libsharpyuv0 libslf4j-java libsnappy-java 2726s libsnappy-jni libsnappy1v5 libswing-layout-java libthai-data libthai0 2726s libtiff6 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 2726s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 2726s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 2726s libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 2726s libxmlgraphics-commons-java libxpp3-java libxrandr2 libxrender1 2726s libxshmfence1 libxstream-java libxtst6 libxxf86vm1 ncbi-vdb-data 2726s openjdk-21-jre openjdk-21-jre-headless ubuntu-mono unzip x11-common 2726s 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. 2726s Need to get 162 MB/162 MB of archives. 2726s After this operation, 521 MB of additional disk space will be used. 2726s Get:1 /tmp/autopkgtest.opYCPy/6-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 2726s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 2726s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 2726s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 2726s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 2726s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 2727s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 2727s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 2727s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 2727s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 2727s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 2727s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 2727s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 2727s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 2727s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 2727s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 2727s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 2727s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 2727s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 2727s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 2727s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 2727s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 2727s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 2727s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 2727s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 2727s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 2727s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 2727s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 2727s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 2727s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 2727s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 2727s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 2727s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 2729s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 2729s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 ant all 1.10.14-1 [2147 kB] 2729s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 2729s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 2729s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 2729s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 2729s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 2729s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 2729s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 2729s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 2729s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 2729s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 2729s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 2729s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 2729s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 2729s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 2729s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 2729s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 2729s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 2729s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 2729s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 2729s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 2729s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 2730s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 2730s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 2730s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 2730s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 2730s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 2730s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 2730s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 2730s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 2730s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 2730s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 2730s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 2730s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 2730s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 2730s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 2730s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 2730s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 2730s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 2730s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 2730s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 2731s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 2731s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 2731s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 2731s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 2731s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 2731s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 2731s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 2731s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 2731s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 2731s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 2731s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 java-wrappers all 0.4 [8662 B] 2731s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxp1.3-java all 1.3.05-6 [227 kB] 2731s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 2731s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 2731s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 2731s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 2731s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 2731s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libxmlgraphics-commons-java all 2.8-2 [619 kB] 2731s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libbatik-java all 1.17+dfsg-1 [3877 kB] 2732s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 2732s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math3-java all 3.6.1-3 [2016 kB] 2732s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] 2733s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] 2733s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] 2733s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] 2733s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libguava-java all 32.0.1-1 [2692 kB] 2733s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libxpp3-java all 1.1.4c-3 [292 kB] 2733s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libxstream-java all 1.4.20-1 [561 kB] 2733s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsap-java all 2.1-5 [100 kB] 2733s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 2733s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 liblogback-java all 1:1.2.11-5 [697 kB] 2733s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 2733s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-configuration-java all 1.10-6 [342 kB] 2733s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-collections3-java all 3.2.2-3 [526 kB] 2733s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libdsiutils-java all 2.7.3+dfsg-1 [511 kB] 2733s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 2733s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 2733s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 2733s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 2733s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 2733s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 2733s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 2734s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 2734s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 2734s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 2734s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 2734s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 2734s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 2734s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 2734s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 2734s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 2734s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 2734s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-beanutils-java all 1.9.4-2 [228 kB] 2734s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libicu4j-java all 73.2-1 [16.4 MB] 2734s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libcolt-free-java all 1.2.0+dfsg-8 [438 kB] 2735s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 2735s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libicb-utils-java all 2.0.1+git20161002.afee1d9-5 [80.9 kB] 2735s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libjide-oss-java all 3.7.6+dfsg-2 [1312 kB] 2735s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 2735s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 2735s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 2735s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 2735s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 2735s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 2735s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libnb-absolutelayout-java all 12.1-3 [7292 B] 2735s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libprotobuf-java all 3.21.12-8ubuntu5 [1201 kB] 2735s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 libswing-layout-java all 1.0.4-4.1 [44.4 kB] 2735s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 igv all 2.17.3+dfsg-1 [3254 kB] 2737s Fetched 162 MB in 9s (17.9 MB/s) 2737s Selecting previously unselected package libgdk-pixbuf2.0-common. 2737s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75470 files and directories currently installed.) 2737s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 2737s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 2737s Selecting previously unselected package libjpeg-turbo8:arm64. 2737s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 2737s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2737s Selecting previously unselected package libjpeg8:arm64. 2737s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 2737s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 2737s Selecting previously unselected package libdeflate0:arm64. 2737s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 2737s Unpacking libdeflate0:arm64 (1.19-1) ... 2737s Selecting previously unselected package libjbig0:arm64. 2738s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 2738s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 2738s Selecting previously unselected package liblerc4:arm64. 2738s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 2738s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2738s Selecting previously unselected package libsharpyuv0:arm64. 2738s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 2738s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 2738s Selecting previously unselected package libwebp7:arm64. 2738s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 2738s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 2738s Selecting previously unselected package libtiff6:arm64. 2738s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 2738s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2738s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 2738s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 2738s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 2738s Selecting previously unselected package gtk-update-icon-cache. 2738s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 2738s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 2738s Selecting previously unselected package hicolor-icon-theme. 2738s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 2738s Unpacking hicolor-icon-theme (0.17-2) ... 2738s Selecting previously unselected package humanity-icon-theme. 2738s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 2738s Unpacking humanity-icon-theme (0.6.16) ... 2742s Selecting previously unselected package ubuntu-mono. 2742s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 2742s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 2744s Selecting previously unselected package adwaita-icon-theme. 2744s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 2744s Unpacking adwaita-icon-theme (46~rc-1) ... 2745s Selecting previously unselected package ca-certificates-java. 2745s Preparing to unpack .../015-ca-certificates-java_20240118_all.deb ... 2745s Unpacking ca-certificates-java (20240118) ... 2745s Selecting previously unselected package java-common. 2745s Preparing to unpack .../016-java-common_0.75+exp1_all.deb ... 2745s Unpacking java-common (0.75+exp1) ... 2745s Selecting previously unselected package libavahi-common-data:arm64. 2745s Preparing to unpack .../017-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 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fonts-dejavu-mono (2.37-8) ... 2746s Selecting previously unselected package fonts-dejavu-core. 2746s Preparing to unpack .../023-fonts-dejavu-core_2.37-8_all.deb ... 2746s Unpacking fonts-dejavu-core (2.37-8) ... 2746s Selecting previously unselected package fontconfig-config. 2746s Preparing to unpack .../024-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 2747s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 2747s Selecting previously unselected package libfontconfig1:arm64. 2747s Preparing to unpack .../025-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 2747s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2747s Selecting previously unselected package libasound2-data. 2747s Preparing to unpack .../026-libasound2-data_1.2.10-3build1_all.deb ... 2747s Unpacking libasound2-data (1.2.10-3build1) ... 2747s Selecting previously unselected package libasound2:arm64. 2747s Preparing to unpack .../027-libasound2_1.2.10-3build1_arm64.deb ... 2747s Unpacking libasound2:arm64 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Preparing to unpack .../038-libxcb-render0_1.15-1_arm64.deb ... 2753s Unpacking libxcb-render0:arm64 (1.15-1) ... 2753s Selecting previously unselected package libxcb-shm0:arm64. 2753s Preparing to unpack .../039-libxcb-shm0_1.15-1_arm64.deb ... 2753s Unpacking libxcb-shm0:arm64 (1.15-1) ... 2753s Selecting previously unselected package libxrender1:arm64. 2753s Preparing to unpack .../040-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 2753s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 2753s Selecting previously unselected package libcairo2:arm64. 2753s Preparing to unpack .../041-libcairo2_1.18.0-1_arm64.deb ... 2753s Unpacking libcairo2:arm64 (1.18.0-1) ... 2753s Selecting previously unselected package fontconfig. 2753s Preparing to unpack .../042-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 2753s Unpacking fontconfig (2.15.0-1ubuntu1) ... 2754s Selecting previously unselected package libthai-data. 2754s Preparing to unpack .../043-libthai-data_0.1.29-2_all.deb ... 2754s Unpacking libthai-data (0.1.29-2) ... 2754s Selecting previously unselected package libdatrie1:arm64. 2754s Preparing to unpack .../044-libdatrie1_0.2.13-3_arm64.deb ... 2754s Unpacking libdatrie1:arm64 (0.2.13-3) ... 2754s Selecting previously unselected package libthai0:arm64. 2754s Preparing to unpack .../045-libthai0_0.1.29-2_arm64.deb ... 2754s Unpacking libthai0:arm64 (0.1.29-2) ... 2754s Selecting previously unselected package libpango-1.0-0:arm64. 2754s Preparing to unpack .../046-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 2754s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2754s Selecting previously unselected package libpangoft2-1.0-0:arm64. 2754s Preparing to unpack .../047-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 2754s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2754s Selecting previously unselected package libpangocairo-1.0-0:arm64. 2754s Preparing to unpack .../048-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 2754s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2754s Selecting previously unselected package libxcomposite1:arm64. 2754s Preparing to unpack .../049-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 2754s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 2754s Selecting previously unselected package libxfixes3:arm64. 2754s Preparing to unpack .../050-libxfixes3_1%3a6.0.0-2_arm64.deb ... 2754s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 2754s Selecting previously unselected package libxcursor1:arm64. 2754s Preparing to unpack .../051-libxcursor1_1%3a1.2.1-1_arm64.deb ... 2754s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 2754s Selecting previously unselected package libxdamage1:arm64. 2754s Preparing to unpack .../052-libxdamage1_1%3a1.1.6-1_arm64.deb ... 2754s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 2755s Selecting previously unselected package libxi6:arm64. 2755s Preparing to unpack .../053-libxi6_2%3a1.8.1-1_arm64.deb ... 2755s Unpacking libxi6:arm64 (2:1.8.1-1) ... 2755s Selecting previously unselected package libxinerama1:arm64. 2755s Preparing to unpack .../054-libxinerama1_2%3a1.1.4-3_arm64.deb ... 2755s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 2755s Selecting previously unselected package libxrandr2:arm64. 2755s Preparing to unpack .../055-libxrandr2_2%3a1.5.2-2_arm64.deb ... 2755s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 2755s Selecting previously unselected package libgtk2.0-0:arm64. 2755s Preparing to unpack .../056-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 2755s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 2755s Selecting previously unselected package libglvnd0:arm64. 2755s Preparing to unpack .../057-libglvnd0_1.7.0-1_arm64.deb ... 2755s Unpacking libglvnd0:arm64 (1.7.0-1) ... 2755s Selecting previously unselected package libglapi-mesa:arm64. 2755s Preparing to unpack .../058-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 2755s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 2755s Selecting previously unselected package libx11-xcb1:arm64. 2755s Preparing to unpack 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libxcb-randr0:arm64 (1.15-1) ... 2756s Selecting previously unselected package libxcb-sync1:arm64. 2756s Preparing to unpack .../065-libxcb-sync1_1.15-1_arm64.deb ... 2756s Unpacking libxcb-sync1:arm64 (1.15-1) ... 2756s Selecting previously unselected package libxcb-xfixes0:arm64. 2756s Preparing to unpack .../066-libxcb-xfixes0_1.15-1_arm64.deb ... 2756s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 2756s Selecting previously unselected package libxshmfence1:arm64. 2756s Preparing to unpack .../067-libxshmfence1_1.3-1build4_arm64.deb ... 2756s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 2756s Selecting previously unselected package libxxf86vm1:arm64. 2756s Preparing to unpack .../068-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 2756s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 2756s Selecting previously unselected package libvulkan1:arm64. 2756s Preparing to unpack .../069-libvulkan1_1.3.275.0-1_arm64.deb ... 2756s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 2756s Selecting previously unselected package libdrm-amdgpu1:arm64. 2756s Preparing to unpack .../070-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 2756s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 2756s Selecting previously unselected package libdrm-nouveau2:arm64. 2757s Preparing to unpack .../071-libdrm-nouveau2_2.4.120-2_arm64.deb ... 2757s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 2757s Selecting previously unselected package libdrm-radeon1:arm64. 2757s Preparing to unpack .../072-libdrm-radeon1_2.4.120-2_arm64.deb ... 2757s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 2757s Selecting previously unselected package libllvm17:arm64. 2757s Preparing to unpack .../073-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 2757s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 2759s Selecting previously unselected package libgl1-mesa-dri:arm64. 2759s Preparing to unpack .../074-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 2759s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 2761s Selecting previously unselected package libglx-mesa0:arm64. 2761s Preparing to unpack .../075-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 2761s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 2761s Selecting previously unselected package libglx0:arm64. 2761s Preparing to unpack .../076-libglx0_1.7.0-1_arm64.deb ... 2761s Unpacking libglx0:arm64 (1.7.0-1) ... 2761s Selecting previously unselected package libgl1:arm64. 2761s Preparing to unpack .../077-libgl1_1.7.0-1_arm64.deb ... 2761s Unpacking libgl1:arm64 (1.7.0-1) ... 2761s Selecting previously unselected package libgif7:arm64. 2761s Preparing to unpack .../078-libgif7_5.2.1-2.5_arm64.deb ... 2761s Unpacking libgif7:arm64 (5.2.1-2.5) ... 2761s Selecting previously unselected package x11-common. 2761s Preparing to unpack .../079-x11-common_1%3a7.7+23ubuntu2_all.deb ... 2761s Unpacking x11-common (1:7.7+23ubuntu2) ... 2761s Selecting previously unselected package libxtst6:arm64. 2761s Preparing to unpack .../080-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 2761s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 2761s Selecting previously unselected package openjdk-21-jre:arm64. 2761s Preparing to unpack .../081-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 2761s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 2761s Selecting previously unselected package default-jre. 2761s Preparing to unpack .../082-default-jre_2%3a1.21-75+exp1_arm64.deb ... 2761s Unpacking default-jre (2:1.21-75+exp1) ... 2761s Selecting previously unselected package unzip. 2761s Preparing to unpack .../083-unzip_6.0-28ubuntu3_arm64.deb ... 2761s Unpacking unzip (6.0-28ubuntu3) ... 2761s Selecting previously unselected package java-wrappers. 2761s Preparing to unpack .../084-java-wrappers_0.4_all.deb ... 2761s Unpacking java-wrappers (0.4) ... 2761s Selecting previously unselected package libjaxp1.3-java. 2761s Preparing to unpack .../085-libjaxp1.3-java_1.3.05-6_all.deb ... 2761s Unpacking libjaxp1.3-java (1.3.05-6) ... 2761s Selecting previously unselected package libxml-commons-external-java. 2761s Preparing to unpack .../086-libxml-commons-external-java_1.4.01-6_all.deb ... 2761s Unpacking libxml-commons-external-java (1.4.01-6) ... 2761s Selecting previously unselected package libapache-pom-java. 2761s Preparing to unpack .../087-libapache-pom-java_29-2_all.deb ... 2761s Unpacking libapache-pom-java (29-2) ... 2761s Selecting previously unselected package libcommons-parent-java. 2761s Preparing to unpack .../088-libcommons-parent-java_56-1_all.deb ... 2761s Unpacking libcommons-parent-java (56-1) ... 2762s Selecting previously unselected package libcommons-io-java. 2762s Preparing to unpack .../089-libcommons-io-java_2.11.0-2_all.deb ... 2762s Unpacking libcommons-io-java (2.11.0-2) ... 2762s Selecting previously unselected package libcommons-logging-java. 2762s Preparing to unpack .../090-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 2762s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 2762s Selecting previously unselected package libxmlgraphics-commons-java. 2762s Preparing to unpack .../091-libxmlgraphics-commons-java_2.8-2_all.deb ... 2762s Unpacking libxmlgraphics-commons-java (2.8-2) ... 2762s Selecting previously unselected package libbatik-java. 2762s Preparing to unpack .../092-libbatik-java_1.17+dfsg-1_all.deb ... 2762s Unpacking libbatik-java (1.17+dfsg-1) ... 2762s Selecting previously unselected package libcommons-lang3-java. 2762s Preparing to unpack .../093-libcommons-lang3-java_3.14.0-1_all.deb ... 2762s Unpacking libcommons-lang3-java (3.14.0-1) ... 2762s Selecting previously unselected package libcommons-math3-java. 2762s Preparing to unpack .../094-libcommons-math3-java_3.6.1-3_all.deb ... 2762s Unpacking libcommons-math3-java (3.6.1-3) ... 2763s Selecting previously unselected package libfastutil-java. 2763s Preparing to unpack .../095-libfastutil-java_8.5.12+dfsg-1_all.deb ... 2763s Unpacking libfastutil-java (8.5.12+dfsg-1) ... 2763s Selecting previously unselected package libatinject-jsr330-api-java. 2763s Preparing to unpack .../096-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... 2763s Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... 2763s Selecting previously unselected package liberror-prone-java. 2763s Preparing to unpack .../097-liberror-prone-java_2.18.0-1_all.deb ... 2763s Unpacking liberror-prone-java (2.18.0-1) ... 2764s Selecting previously unselected package libjsr305-java. 2764s Preparing to unpack .../098-libjsr305-java_0.1~+svn49-11_all.deb ... 2764s Unpacking libjsr305-java (0.1~+svn49-11) ... 2764s Selecting previously unselected package libguava-java. 2764s Preparing to unpack .../099-libguava-java_32.0.1-1_all.deb ... 2764s Unpacking libguava-java (32.0.1-1) ... 2764s Selecting previously unselected package libxpp3-java. 2764s Preparing to unpack .../100-libxpp3-java_1.1.4c-3_all.deb ... 2764s Unpacking libxpp3-java (1.1.4c-3) ... 2764s Selecting previously unselected package libxstream-java. 2764s Preparing to unpack .../101-libxstream-java_1.4.20-1_all.deb ... 2764s Unpacking libxstream-java (1.4.20-1) ... 2764s Selecting previously unselected package libjsap-java. 2764s Preparing to unpack .../102-libjsap-java_2.1-5_all.deb ... 2764s Unpacking libjsap-java (2.1-5) ... 2764s Selecting previously unselected package libslf4j-java. 2764s Preparing to unpack .../103-libslf4j-java_1.7.32-1_all.deb ... 2764s Unpacking libslf4j-java (1.7.32-1) ... 2764s Selecting previously unselected package liblogback-java. 2764s Preparing to unpack .../104-liblogback-java_1%3a1.2.11-5_all.deb ... 2764s Unpacking liblogback-java (1:1.2.11-5) ... 2765s Selecting previously unselected package libcommons-lang-java. 2765s Preparing to unpack .../105-libcommons-lang-java_2.6-10_all.deb ... 2765s Unpacking libcommons-lang-java (2.6-10) ... 2765s Selecting previously unselected package libcommons-configuration-java. 2765s Preparing to unpack .../106-libcommons-configuration-java_1.10-6_all.deb ... 2765s Unpacking libcommons-configuration-java (1.10-6) ... 2765s Selecting previously unselected package libcommons-collections3-java. 2765s Preparing to unpack .../107-libcommons-collections3-java_3.2.2-3_all.deb ... 2765s Unpacking libcommons-collections3-java (3.2.2-3) ... 2765s Selecting previously unselected package libdsiutils-java. 2765s Preparing to unpack .../108-libdsiutils-java_2.7.3+dfsg-1_all.deb ... 2765s Unpacking libdsiutils-java (2.7.3+dfsg-1) ... 2765s Selecting previously unselected package libgoogle-gson-java. 2765s Preparing to unpack .../109-libgoogle-gson-java_2.10.1-1_all.deb ... 2765s Unpacking libgoogle-gson-java (2.10.1-1) ... 2765s Selecting previously unselected package libcommons-compress-java. 2765s Preparing to unpack .../110-libcommons-compress-java_1.25.0-1_all.deb ... 2765s Unpacking libcommons-compress-java (1.25.0-1) ... 2765s Selecting previously unselected package libcommons-jexl2-java. 2765s Preparing to unpack .../111-libcommons-jexl2-java_2.1.1-6_all.deb ... 2765s Unpacking libcommons-jexl2-java (2.1.1-6) ... 2765s Selecting previously unselected package libmjson-java. 2765s Preparing to unpack .../112-libmjson-java_1.4.0-3_all.deb ... 2765s Unpacking libmjson-java (1.4.0-3) ... 2765s Selecting previously unselected package libmbedcrypto7:arm64. 2765s Preparing to unpack .../113-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 2765s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 2766s Selecting previously unselected package libmbedx509-1:arm64. 2766s Preparing to unpack .../114-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 2766s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 2766s Selecting previously unselected package libmbedtls14:arm64. 2766s Preparing to unpack .../115-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 2766s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 2766s Selecting previously unselected package ncbi-vdb-data. 2766s Preparing to unpack .../116-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 2766s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 2766s Selecting previously unselected package libncbi-vdb3:arm64. 2766s Preparing to unpack .../117-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 2766s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 2766s Selecting previously unselected package libncbi-ngs3:arm64. 2766s Preparing to unpack .../118-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2766s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 2766s Selecting previously unselected package libngs-jni:arm64. 2766s Preparing to unpack .../119-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2766s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 2766s Selecting previously unselected package libngs-java:arm64. 2766s Preparing to unpack .../120-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2766s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 2766s Selecting previously unselected package librhino-java. 2766s Preparing to unpack .../121-librhino-java_1.7.14-2.1_all.deb ... 2766s Unpacking librhino-java (1.7.14-2.1) ... 2766s Selecting previously unselected package libsnappy1v5:arm64. 2766s Preparing to unpack .../122-libsnappy1v5_1.1.10-1_arm64.deb ... 2766s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 2767s Selecting previously unselected package libsnappy-jni. 2767s Preparing to unpack .../123-libsnappy-jni_1.1.10.5-1_arm64.deb ... 2767s Unpacking libsnappy-jni (1.1.10.5-1) ... 2767s Selecting previously unselected package libsnappy-java. 2767s Preparing to unpack .../124-libsnappy-java_1.1.10.5-1_all.deb ... 2767s Unpacking libsnappy-java (1.1.10.5-1) ... 2767s Selecting previously unselected package libhtsjdk-java. 2767s Preparing to unpack .../125-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 2767s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 2767s Selecting previously unselected package libcommons-beanutils-java. 2767s Preparing to unpack .../126-libcommons-beanutils-java_1.9.4-2_all.deb ... 2767s Unpacking libcommons-beanutils-java (1.9.4-2) ... 2767s Selecting previously unselected package libicu4j-java. 2767s Preparing to unpack .../127-libicu4j-java_73.2-1_all.deb ... 2767s Unpacking libicu4j-java (73.2-1) ... 2767s Selecting previously unselected package libcolt-free-java. 2768s Preparing to unpack .../128-libcolt-free-java_1.2.0+dfsg-8_all.deb ... 2768s Unpacking libcolt-free-java (1.2.0+dfsg-8) ... 2768s Selecting previously unselected package liblog4j1.2-java. 2768s Preparing to unpack .../129-liblog4j1.2-java_1.2.17-11_all.deb ... 2768s Unpacking liblog4j1.2-java (1.2.17-11) ... 2768s Selecting previously unselected package libicb-utils-java. 2768s Preparing to unpack .../130-libicb-utils-java_2.0.1+git20161002.afee1d9-5_all.deb ... 2768s Unpacking libicb-utils-java (2.0.1+git20161002.afee1d9-5) ... 2768s Selecting previously unselected package libjide-oss-java. 2768s Preparing to unpack .../131-libjide-oss-java_3.7.6+dfsg-2_all.deb ... 2768s Unpacking libjide-oss-java (3.7.6+dfsg-2) ... 2768s Selecting previously unselected package libcommons-codec-java. 2768s Preparing to unpack .../132-libcommons-codec-java_1.16.0-1_all.deb ... 2768s Unpacking libcommons-codec-java (1.16.0-1) ... 2768s Selecting previously unselected package libhttpcore-java. 2768s Preparing to unpack .../133-libhttpcore-java_4.4.16-1_all.deb ... 2768s Unpacking libhttpcore-java (4.4.16-1) ... 2768s Selecting previously unselected package libhttpclient-java. 2768s Preparing to unpack .../134-libhttpclient-java_4.5.14-1_all.deb ... 2768s Unpacking libhttpclient-java (4.5.14-1) ... 2768s Selecting previously unselected package liblightcouch-java. 2768s Preparing to unpack .../135-liblightcouch-java_0.2.0-1_all.deb ... 2768s Unpacking liblightcouch-java (0.2.0-1) ... 2768s Selecting previously unselected package libmongodb-java. 2768s Preparing to unpack .../136-libmongodb-java_3.6.3-2_all.deb ... 2768s Unpacking libmongodb-java (3.6.3-2) ... 2769s Selecting previously unselected package liblog4j2-java. 2769s Preparing to unpack .../137-liblog4j2-java_2.19.0-2_all.deb ... 2769s Unpacking liblog4j2-java (2.19.0-2) ... 2769s Selecting previously unselected package libnb-absolutelayout-java. 2769s Preparing to unpack .../138-libnb-absolutelayout-java_12.1-3_all.deb ... 2769s Unpacking libnb-absolutelayout-java (12.1-3) ... 2769s Selecting previously unselected package libprotobuf-java. 2769s Preparing to unpack .../139-libprotobuf-java_3.21.12-8ubuntu5_all.deb ... 2769s Unpacking libprotobuf-java (3.21.12-8ubuntu5) ... 2769s Selecting previously unselected package libswing-layout-java. 2769s Preparing to unpack .../140-libswing-layout-java_1.0.4-4.1_all.deb ... 2769s Unpacking libswing-layout-java (1.0.4-4.1) ... 2770s Selecting previously unselected package igv. 2770s Preparing to unpack .../141-igv_2.17.3+dfsg-1_all.deb ... 2770s Unpacking igv (2.17.3+dfsg-1) ... 2770s Selecting previously unselected package autopkgtest-satdep. 2770s Preparing to unpack .../142-6-autopkgtest-satdep.deb ... 2770s Unpacking autopkgtest-satdep (0) ... 2770s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 2770s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 2770s Setting up liblcms2-2:arm64 (2.14-2) ... 2770s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 2770s Setting up libfastutil-java (8.5.12+dfsg-1) ... 2770s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 2770s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 2770s Setting up libslf4j-java (1.7.32-1) ... 2770s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 2770s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 2770s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 2770s Setting up libjide-oss-java (3.7.6+dfsg-2) ... 2770s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2770s Setting up libjsr305-java (0.1~+svn49-11) ... 2770s Setting up hicolor-icon-theme (0.17-2) ... 2770s Setting up libxi6:arm64 (2:1.8.1-1) ... 2770s Setting up libicu4j-java (73.2-1) ... 2770s Setting up java-common (0.75+exp1) ... 2770s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 2770s Setting up libdatrie1:arm64 (0.2.13-3) ... 2770s Setting up libxcb-render0:arm64 (1.15-1) ... 2770s Setting up liblogback-java (1:1.2.11-5) ... 2770s Setting up libswing-layout-java (1.0.4-4.1) ... 2770s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 2770s Setting up libglvnd0:arm64 (1.7.0-1) ... 2770s Setting up libgoogle-gson-java (2.10.1-1) ... 2770s Setting up libmjson-java (1.4.0-3) ... 2770s Setting up libxcb-glx0:arm64 (1.15-1) ... 2770s Setting up unzip (6.0-28ubuntu3) ... 2770s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 2770s Setting up x11-common (1:7.7+23ubuntu2) ... 2772s Setting up libdeflate0:arm64 (1.19-1) ... 2772s Setting up liblog4j1.2-java (1.2.17-11) ... 2772s Setting up libxcb-shm0:arm64 (1.15-1) ... 2772s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 2772s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 2772s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 2772s Setting up libxcb-present0:arm64 (1.15-1) ... 2772s Setting up libcommons-collections3-java (3.2.2-3) ... 2772s Setting up libasound2-data (1.2.10-3build1) ... 2772s Setting up libnb-absolutelayout-java (12.1-3) ... 2772s Setting up librhino-java (1.7.14-2.1) ... 2772s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 2772s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 2772s Setting up libxcb-sync1:arm64 (1.15-1) ... 2772s Setting up libapache-pom-java (29-2) ... 2772s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 2772s Setting up libxpp3-java (1.1.4c-3) ... 2772s Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... 2772s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 2772s Setting up fonts-dejavu-mono (2.37-8) ... 2772s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 2772s Setting up fonts-dejavu-core (2.37-8) ... 2772s Setting up libpcsclite1:arm64 (2.0.0-1) ... 2772s Setting up libmongodb-java (3.6.3-2) ... 2772s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2772s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 2772s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 2772s Setting up libwebp7:arm64 (1.3.2-0.4) ... 2772s Setting up libcolt-free-java (1.2.0+dfsg-8) ... 2772s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 2772s Setting up libgif7:arm64 (5.2.1-2.5) ... 2772s Setting up libxshmfence1:arm64 (1.3-1build4) ... 2772s Setting up at-spi2-common (2.50.0-1) ... 2772s Setting up libxcb-randr0:arm64 (1.15-1) ... 2772s Setting up libxml-commons-external-java (1.4.01-6) ... 2772s Setting up libasound2:arm64 (1.2.10-3build1) ... 2772s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 2772s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 2772s Setting up libthai-data (0.1.29-2) ... 2772s Setting up libcommons-math3-java (3.6.1-3) ... 2772s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 2772s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 2772s Setting up libhttpcore-java (4.4.16-1) ... 2772s Setting up ca-certificates-java (20240118) ... 2772s No JRE found. Skipping Java certificates setup. 2772s Setting up libjaxp1.3-java (1.3.05-6) ... 2772s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 2772s Setting up libsnappy-jni (1.1.10.5-1) ... 2772s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 2772s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 2772s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 2772s Setting up libxstream-java (1.4.20-1) ... 2772s Setting up java-wrappers (0.4) ... 2772s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 2772s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 2772s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 2773s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 2773s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 2773s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 2773s Setting up libcommons-parent-java (56-1) ... 2773s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 2773s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 2773s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 2773s Setting up libcommons-lang-java (2.6-10) ... 2773s Setting up libcommons-jexl2-java (2.1.1-6) ... 2773s Setting up libthai0:arm64 (0.1.29-2) ... 2773s Setting up libcommons-lang3-java (3.14.0-1) ... 2773s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2773s Setting up libcommons-beanutils-java (1.9.4-2) ... 2773s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 2773s Setting up libsnappy-java (1.1.10.5-1) ... 2773s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2773s Setting up libcommons-configuration-java (1.10-6) ... 2773s Setting up libcommons-codec-java (1.16.0-1) ... 2773s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 2773s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 2773s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 2773s Setting up fontconfig (2.15.0-1ubuntu1) ... 2775s Regenerating fonts cache... done. 2775s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 2775s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 2775s Setting up libglx0:arm64 (1.7.0-1) ... 2775s Setting up libcommons-compress-java (1.25.0-1) ... 2775s Setting up libcommons-io-java (2.11.0-2) ... 2775s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2775s Setting up libxmlgraphics-commons-java (2.8-2) ... 2775s Setting up libcairo2:arm64 (1.18.0-1) ... 2775s Setting up libgl1:arm64 (1.7.0-1) ... 2775s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 2775s Setting up libhttpclient-java (4.5.14-1) ... 2775s Setting up liblightcouch-java (0.2.0-1) ... 2775s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 2775s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2775s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 2775s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2775s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 2775s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 2775s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 2775s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 2775s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 2775s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 2775s Setting up libbatik-java (1.17+dfsg-1) ... 2775s Setting up liblog4j2-java (2.19.0-2) ... 2775s Setting up adwaita-icon-theme (46~rc-1) ... 2775s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 2775s Setting up liberror-prone-java (2.18.0-1) ... 2775s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 2776s Setting up humanity-icon-theme (0.6.16) ... 2776s Setting up libguava-java (32.0.1-1) ... 2776s Setting up libprotobuf-java (3.21.12-8ubuntu5) ... 2776s Setting up ubuntu-mono (24.04-0ubuntu1) ... 2776s Processing triggers for man-db (2.12.0-3) ... 2778s Processing triggers for libc-bin (2.39-0ubuntu6) ... 2778s Processing triggers for ca-certificates-java (20240118) ... 2780s Adding debian:ACCVRAIZ1.pem 2780s Adding debian:AC_RAIZ_FNMT-RCM.pem 2780s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 2780s Adding debian:ANF_Secure_Server_Root_CA.pem 2780s Adding debian:Actalis_Authentication_Root_CA.pem 2780s Adding debian:AffirmTrust_Commercial.pem 2780s Adding debian:AffirmTrust_Networking.pem 2780s Adding debian:AffirmTrust_Premium.pem 2780s Adding debian:AffirmTrust_Premium_ECC.pem 2780s Adding debian:Amazon_Root_CA_1.pem 2780s Adding debian:Amazon_Root_CA_2.pem 2780s Adding debian:Amazon_Root_CA_3.pem 2780s Adding debian:Amazon_Root_CA_4.pem 2780s Adding debian:Atos_TrustedRoot_2011.pem 2780s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 2780s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 2780s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 2780s Adding debian:BJCA_Global_Root_CA1.pem 2780s Adding debian:BJCA_Global_Root_CA2.pem 2780s Adding debian:Baltimore_CyberTrust_Root.pem 2780s Adding debian:Buypass_Class_2_Root_CA.pem 2780s Adding debian:Buypass_Class_3_Root_CA.pem 2780s Adding debian:CA_Disig_Root_R2.pem 2780s Adding debian:CFCA_EV_ROOT.pem 2780s Adding debian:COMODO_Certification_Authority.pem 2780s Adding debian:COMODO_ECC_Certification_Authority.pem 2781s Adding debian:COMODO_RSA_Certification_Authority.pem 2781s Adding debian:Certainly_Root_E1.pem 2781s Adding debian:Certainly_Root_R1.pem 2781s Adding debian:Certigna.pem 2781s Adding debian:Certigna_Root_CA.pem 2781s Adding debian:Certum_EC-384_CA.pem 2781s Adding debian:Certum_Trusted_Network_CA.pem 2781s Adding debian:Certum_Trusted_Network_CA_2.pem 2781s Adding debian:Certum_Trusted_Root_CA.pem 2781s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 2781s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 2781s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 2781s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 2781s Adding debian:Comodo_AAA_Services_root.pem 2781s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 2781s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 2781s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 2781s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 2781s Adding debian:DigiCert_Assured_ID_Root_CA.pem 2781s Adding debian:DigiCert_Assured_ID_Root_G2.pem 2781s Adding debian:DigiCert_Assured_ID_Root_G3.pem 2781s Adding debian:DigiCert_Global_Root_CA.pem 2781s Adding debian:DigiCert_Global_Root_G2.pem 2781s Adding debian:DigiCert_Global_Root_G3.pem 2781s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 2781s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 2781s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 2781s Adding debian:DigiCert_Trusted_Root_G4.pem 2781s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 2781s Adding debian:Entrust_Root_Certification_Authority.pem 2781s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 2781s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 2781s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 2781s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 2781s Adding debian:GLOBALTRUST_2020.pem 2781s Adding debian:GTS_Root_R1.pem 2781s Adding debian:GTS_Root_R2.pem 2781s Adding debian:GTS_Root_R3.pem 2781s Adding debian:GTS_Root_R4.pem 2781s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 2781s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 2781s Adding debian:GlobalSign_Root_CA.pem 2781s Adding debian:GlobalSign_Root_CA_-_R3.pem 2781s Adding debian:GlobalSign_Root_CA_-_R6.pem 2781s Adding debian:GlobalSign_Root_E46.pem 2781s Adding debian:GlobalSign_Root_R46.pem 2781s Adding debian:Go_Daddy_Class_2_CA.pem 2781s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 2781s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 2781s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 2781s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 2781s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 2781s Adding debian:HiPKI_Root_CA_-_G1.pem 2781s Adding debian:Hongkong_Post_Root_CA_3.pem 2781s Adding debian:ISRG_Root_X1.pem 2781s Adding debian:ISRG_Root_X2.pem 2781s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 2781s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 2781s Adding debian:Izenpe.com.pem 2781s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 2781s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 2781s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 2781s Adding debian:NAVER_Global_Root_Certification_Authority.pem 2781s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 2781s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 2782s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 2782s Adding debian:QuoVadis_Root_CA_1_G3.pem 2782s Adding debian:QuoVadis_Root_CA_2.pem 2782s Adding debian:QuoVadis_Root_CA_2_G3.pem 2782s Adding debian:QuoVadis_Root_CA_3.pem 2782s Adding debian:QuoVadis_Root_CA_3_G3.pem 2782s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 2782s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 2782s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 2782s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 2782s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 2782s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 2782s Adding debian:SZAFIR_ROOT_CA2.pem 2782s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 2782s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 2782s Adding debian:SecureSign_RootCA11.pem 2782s Adding debian:SecureTrust_CA.pem 2782s Adding debian:Secure_Global_CA.pem 2782s Adding debian:Security_Communication_ECC_RootCA1.pem 2782s Adding debian:Security_Communication_RootCA2.pem 2782s Adding debian:Security_Communication_RootCA3.pem 2782s Adding debian:Security_Communication_Root_CA.pem 2782s Adding debian:Starfield_Class_2_CA.pem 2782s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 2782s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 2782s Adding debian:SwissSign_Gold_CA_-_G2.pem 2782s Adding debian:SwissSign_Silver_CA_-_G2.pem 2782s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 2782s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 2782s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 2782s Adding debian:TWCA_Global_Root_CA.pem 2782s Adding debian:TWCA_Root_Certification_Authority.pem 2782s Adding debian:TeliaSonera_Root_CA_v1.pem 2782s Adding debian:Telia_Root_CA_v2.pem 2782s Adding debian:TrustAsia_Global_Root_CA_G3.pem 2782s Adding debian:TrustAsia_Global_Root_CA_G4.pem 2782s Adding debian:Trustwave_Global_Certification_Authority.pem 2782s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 2782s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 2782s Adding debian:TunTrust_Root_CA.pem 2782s Adding debian:UCA_Extended_Validation_Root.pem 2782s Adding debian:UCA_Global_G2_Root.pem 2782s Adding debian:USERTrust_ECC_Certification_Authority.pem 2782s Adding debian:USERTrust_RSA_Certification_Authority.pem 2782s Adding debian:XRamp_Global_CA_Root.pem 2782s Adding debian:certSIGN_ROOT_CA.pem 2782s Adding debian:certSIGN_Root_CA_G2.pem 2782s Adding debian:e-Szigno_Root_CA_2017.pem 2782s Adding debian:ePKI_Root_Certification_Authority.pem 2782s Adding debian:emSign_ECC_Root_CA_-_C3.pem 2782s Adding debian:emSign_ECC_Root_CA_-_G3.pem 2782s Adding debian:emSign_Root_CA_-_C1.pem 2782s Adding debian:emSign_Root_CA_-_G1.pem 2782s Adding debian:vTrus_ECC_Root_CA.pem 2782s Adding debian:vTrus_Root_CA.pem 2783s done. 2783s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 2783s Setting up ant (1.10.14-1) ... 2783s Setting up default-jre-headless (2:1.21-75+exp1) ... 2783s Setting up default-jre (2:1.21-75+exp1) ... 2783s Setting up libjsap-java (2.1-5) ... 2783s Setting up libdsiutils-java (2.7.3+dfsg-1) ... 2783s Setting up libicb-utils-java (2.0.1+git20161002.afee1d9-5) ... 2783s Setting up igv (2.17.3+dfsg-1) ... 2783s Setting up autopkgtest-satdep (0) ... 2798s (Reading database ... 90742 files and directories currently installed.) 2798s Removing autopkgtest-satdep (0) ... 2805s autopkgtest [19:09:01]: test command1: java -cp /usr/share/java/igv.jar org.broad.igv.tools.IgvTools index src/test/resources/htsjdk/samtools/example.bam 2805s autopkgtest [19:09:01]: test command1: [----------------------- 2807s Done 2807s autopkgtest [19:09:03]: test command1: -----------------------] 2808s autopkgtest [19:09:04]: test command1: - - - - - - - - - - results - - - - - - - - - - 2808s command1 PASS 2808s autopkgtest [19:09:04]: test picard-tools-run-unit-test: preparing testbed 2969s autopkgtest [19:11:45]: testbed dpkg architecture: arm64 2970s autopkgtest [19:11:46]: testbed apt version: 2.7.12 2970s autopkgtest [19:11:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 2971s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 2972s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 2972s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 2972s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 2972s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4007 kB] 2972s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 2973s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 2973s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 2973s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 2973s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 2973s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 2973s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 2973s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 2982s Fetched 9869 kB in 5s (2045 kB/s) 2983s Reading package lists... 2989s Reading package lists... 2990s Building dependency tree... 2990s Reading state information... 2991s Calculating upgrade... 2992s The following packages will be REMOVED: 2992s libmagic1 libssl3 2992s The following NEW packages will be installed: 2992s libmagic1t64 libssl3t64 2992s The following packages have been kept back: 2992s curl 2992s The following packages will be upgraded: 2992s file libmagic-mgc openssl 2993s 3 upgraded, 2 newly installed, 2 to remove and 1 not upgraded. 2993s Need to get 3192 kB of archives. 2993s After this operation, 145 kB of additional disk space will be used. 2993s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 2993s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 2993s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 2993s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 2993s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 2994s Fetched 3192 kB in 1s (3969 kB/s) 2995s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 2995s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 2995s Unpacking file (1:5.45-3) over (1:5.45-2) ... 2995s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 2995s Removing libmagic1:arm64 (1:5.45-2) ... 2995s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 2995s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 2995s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 2996s Selecting previously unselected package libmagic1t64:arm64. 2996s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 2996s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 2996s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 2996s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 2997s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 2997s wget depends on libssl3 (>= 3.0.0). 2997s u-boot-tools depends on libssl3 (>= 3.0.0). 2997s tnftp depends on libssl3 (>= 3.0.0). 2997s tcpdump depends on libssl3 (>= 3.0.0). 2997s systemd-resolved depends on libssl3 (>= 3.0.0). 2997s systemd depends on libssl3 (>= 3.0.0). 2997s sudo depends on libssl3 (>= 3.0.0). 2997s sbsigntool depends on libssl3 (>= 3.0.0). 2997s rsync depends on libssl3 (>= 3.0.0). 2997s python3-cryptography depends on libssl3 (>= 3.0.0). 2997s openssh-server depends on libssl3 (>= 3.0.10). 2997s openssh-client depends on libssl3 (>= 3.0.10). 2997s mtd-utils depends on libssl3 (>= 3.0.0). 2997s mokutil depends on libssl3 (>= 3.0.0). 2997s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 2997s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 2997s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 2997s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 2997s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 2997s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 2997s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 2997s libnvme1 depends on libssl3 (>= 3.0.0). 2997s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 2997s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 2997s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 2997s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 2997s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 2997s kmod depends on libssl3 (>= 3.0.0). 2997s dhcpcd-base depends on libssl3 (>= 3.0.0). 2997s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 2997s 2997s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 2997s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 2997s Selecting previously unselected package libssl3t64:arm64. 2997s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 2997s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 2997s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 2997s Setting up libmagic-mgc (1:5.45-3) ... 2997s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 2997s Setting up libmagic1t64:arm64 (1:5.45-3) ... 2997s Setting up file (1:5.45-3) ... 2997s Setting up openssl (3.0.13-0ubuntu2) ... 2997s Processing triggers for man-db (2.12.0-3) ... 2999s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3000s Reading package lists... 3000s Building dependency tree... 3000s Reading state information... 3002s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 3004s sh: Attempting to set up Debian/Ubuntu apt sources automatically 3004s Reading package lists...sh: Distribution appears to be Ubuntu 3007s 3007s Building dependency tree... 3007s Reading state information... 3009s eatmydata is already the newest version (131-1). 3009s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3009s Reading package lists... 3009s Building dependency tree... 3009s Reading state information... 3011s dbus is already the newest version (1.14.10-4ubuntu1). 3011s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3011s Reading package lists... 3012s Building dependency tree... 3012s Reading state information... 3013s rng-tools-debian is already the newest version (2.4). 3013s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3013s Reading package lists... 3014s Building dependency tree... 3014s Reading state information... 3015s The following packages will be REMOVED: 3015s cloud-init* python3-configobj* python3-debconf* 3016s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 3016s After this operation, 3256 kB disk space will be freed. 3016s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 3016s Removing cloud-init (24.1.2-0ubuntu1) ... 3019s Removing python3-configobj (5.0.8-3) ... 3019s Removing python3-debconf (1.5.86) ... 3019s Processing triggers for man-db (2.12.0-3) ... 3020s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75525 files and directories currently installed.) 3020s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 3022s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 3022s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 3022s invoke-rc.d: policy-rc.d denied execution of try-restart. 3023s Reading package lists... 3023s Building dependency tree... 3023s Reading state information... 3025s linux-generic is already the newest version (6.8.0-11.11+1). 3025s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3025s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 3025s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 3025s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 3034s Reading package lists... 3035s Reading package lists... 3035s Building dependency tree... 3035s Reading state information... 3037s Calculating upgrade... 3038s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3038s Reading package lists... 3038s Building dependency tree... 3038s Reading state information... 3040s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3040s autopkgtest [19:12:56]: rebooting testbed after setup commands that affected boot 3208s Reading package lists... 3208s Building dependency tree... 3208s Reading state information... 3209s Starting pkgProblemResolver with broken count: 0 3210s Starting 2 pkgProblemResolver with broken count: 0 3210s Done 3211s The following additional packages will be installed: 3211s adwaita-icon-theme at-spi2-common ca-certificates-java default-jre 3211s default-jre-headless fontconfig fontconfig-config fonts-dejavu-core 3211s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 3211s humanity-icon-theme java-common libapache-pom-java libasound2 3211s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 3211s libavahi-common3 libbarclay-java libcairo2 libcommons-codec-java 3211s libcommons-compress-java libcommons-io-java libcommons-jexl2-java 3211s libcommons-lang3-java libcommons-logging-java libcommons-math3-java 3211s libcommons-parent-java libcups2 libdatrie1 libdeflate0 libdrm-amdgpu1 3211s libdrm-nouveau2 libdrm-radeon1 libfontconfig1 libfreemarker-java 3211s libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 3211s libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 3211s libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 3211s libgtk2.0-common libharfbuzz0b libhtsjdk-java libhttpclient-java 3211s libhttpcore-java libjbig0 libjoptsimple-java libjpeg-turbo8 libjpeg8 3211s liblcms2-2 liblerc4 liblightcouch-java libllvm17 liblog4j2-java 3211s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libmongodb-java 3211s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 3211s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpicard-java 3211s libpixman-1-0 librhino-java libsharpyuv0 libslf4j-java libsnappy-java 3211s libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 3211s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 3211s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 3211s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 3211s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 3211s openjdk-21-jre openjdk-21-jre-headless picard-tools ubuntu-mono x11-common 3211s Suggested packages: 3211s libasound2-plugins alsa-utils libasm-java libxz-java libcommons-io-java-doc 3211s libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java 3211s cups-common jython libdom4j-java libjaxen-java libjdom1-java libxalan2-java 3211s libgoogle-gson-java-doc gvfs libjoptsimple-java-doc liblcms2-utils 3211s libactivation-java libcommons-csv-java libconversant-disruptor-java 3211s libdisruptor-java libgeronimo-jms-1.1-spec-java 3211s libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjansi-java 3211s libjctools-java libjeromq-java libmail-java libwoodstox-java libngs-java-doc 3211s pcscd rhino libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic 3211s fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 3211s Recommended packages: 3211s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 3211s libgkl-jni libgl1-amber-dri libgail-common libgtk2.0-bin r-base-core 3211s mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 3211s The following NEW packages will be installed: 3211s adwaita-icon-theme at-spi2-common autopkgtest-satdep ca-certificates-java 3211s default-jre default-jre-headless fontconfig fontconfig-config 3211s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 3211s humanity-icon-theme java-common libapache-pom-java libasound2 3211s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 3211s libavahi-common3 libbarclay-java libcairo2 libcommons-codec-java 3211s libcommons-compress-java libcommons-io-java libcommons-jexl2-java 3211s libcommons-lang3-java libcommons-logging-java libcommons-math3-java 3211s libcommons-parent-java libcups2 libdatrie1 libdeflate0 libdrm-amdgpu1 3211s libdrm-nouveau2 libdrm-radeon1 libfontconfig1 libfreemarker-java 3211s libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 3211s libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 3211s libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 3211s libgtk2.0-common libharfbuzz0b libhtsjdk-java libhttpclient-java 3211s libhttpcore-java libjbig0 libjoptsimple-java libjpeg-turbo8 libjpeg8 3211s liblcms2-2 liblerc4 liblightcouch-java libllvm17 liblog4j2-java 3211s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libmongodb-java 3211s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 3211s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpicard-java 3211s libpixman-1-0 librhino-java libsharpyuv0 libslf4j-java libsnappy-java 3211s libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 3211s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 3211s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 3211s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 3211s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 3211s openjdk-21-jre openjdk-21-jre-headless picard-tools ubuntu-mono x11-common 3212s 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded. 3212s Need to get 110 MB/110 MB of archives. 3212s After this operation, 453 MB of additional disk space will be used. 3212s Get:1 /tmp/autopkgtest.opYCPy/7-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 3212s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 3212s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 3212s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 3212s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 3212s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 3212s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 3212s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 3212s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 3212s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 3212s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 3212s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 3212s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 3212s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 3212s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 3212s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 3212s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 3212s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 3212s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 3212s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 3212s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 3212s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 3212s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 3212s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 3212s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 3213s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 3213s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 3213s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 3213s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 3213s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 3213s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 3213s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 3213s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 3213s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 3215s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 3215s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 3215s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 3215s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 3215s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 3215s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 3215s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 3215s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 3215s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 3215s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 3215s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 3215s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 3215s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 3215s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 3215s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 3215s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 3215s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 3215s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 3215s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 3215s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 3215s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 3215s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 3215s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 3216s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 3216s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 3216s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 3216s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 3216s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 3216s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 3216s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 3216s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 3216s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 3216s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 3216s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 3216s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 3216s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 3216s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 3216s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 3216s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 3216s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 3217s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 3217s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 3217s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 3217s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 3217s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 3217s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 3217s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 3217s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 3217s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 3217s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 3217s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 3218s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 3218s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreemarker-java all 2.3.32-2 [1542 kB] 3218s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 3218s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjoptsimple-java all 5.0.4-4 [73.1 kB] 3218s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 3218s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 3218s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 3218s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 3218s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 3218s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 3218s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 3218s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 3218s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libbarclay-java all 5.0.0+dfsg-1 [108 kB] 3218s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 3218s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 3218s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 3218s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math3-java all 3.6.1-3 [2016 kB] 3218s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libgatk-native-bindings-java all 1.0.0+dfsg-2 [8014 B] 3218s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 3219s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 3219s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 3219s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 3219s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 3219s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 3219s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 3219s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 3219s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 3219s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 3219s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 3219s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 3219s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 3219s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 3219s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libgkl-java all 0.8.11+dfsg-2 [24.8 kB] 3219s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpicard-java all 3.1.1+dfsg-1 [1731 kB] 3219s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 picard-tools all 3.1.1+dfsg-1 [308 kB] 3221s Fetched 110 MB in 8s (14.2 MB/s) 3221s Selecting previously unselected package libgdk-pixbuf2.0-common. 3221s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75470 files and directories currently installed.) 3221s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 3221s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 3222s Selecting previously unselected package libjpeg-turbo8:arm64. 3222s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 3222s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 3222s Selecting previously unselected package libjpeg8:arm64. 3222s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 3222s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 3222s Selecting previously unselected package libdeflate0:arm64. 3222s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 3222s Unpacking libdeflate0:arm64 (1.19-1) ... 3222s Selecting previously unselected package libjbig0:arm64. 3222s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 3222s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 3222s Selecting previously unselected package liblerc4:arm64. 3222s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 3222s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 3222s Selecting previously unselected package libsharpyuv0:arm64. 3222s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 3222s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 3222s Selecting previously unselected package libwebp7:arm64. 3222s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 3222s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 3222s Selecting previously unselected package libtiff6:arm64. 3222s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 3222s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 3222s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 3222s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 3222s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 3223s Selecting previously unselected package gtk-update-icon-cache. 3223s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 3223s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 3223s Selecting previously unselected package hicolor-icon-theme. 3223s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 3223s Unpacking hicolor-icon-theme (0.17-2) ... 3223s Selecting previously unselected package humanity-icon-theme. 3223s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 3223s Unpacking humanity-icon-theme (0.6.16) ... 3228s Selecting previously unselected package ubuntu-mono. 3228s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 3228s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 3230s Selecting previously unselected package adwaita-icon-theme. 3230s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 3230s Unpacking adwaita-icon-theme (46~rc-1) ... 3231s Selecting previously unselected package at-spi2-common. 3231s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 3231s Unpacking at-spi2-common (2.50.0-1) ... 3231s Selecting previously unselected package ca-certificates-java. 3231s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 3231s Unpacking ca-certificates-java (20240118) ... 3231s Selecting previously unselected package java-common. 3231s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 3231s Unpacking java-common (0.75+exp1) ... 3231s Selecting previously unselected package libavahi-common-data:arm64. 3231s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 3231s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 3231s Selecting previously unselected package libavahi-common3:arm64. 3231s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 3231s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 3232s Selecting previously unselected package libavahi-client3:arm64. 3232s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 3232s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 3232s Selecting previously unselected package libcups2:arm64. 3232s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 3232s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 3232s Selecting previously unselected package liblcms2-2:arm64. 3232s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 3232s Unpacking liblcms2-2:arm64 (2.14-2) ... 3232s Selecting previously unselected package fonts-dejavu-mono. 3232s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 3232s Unpacking fonts-dejavu-mono (2.37-8) ... 3232s Selecting previously unselected package fonts-dejavu-core. 3232s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 3232s Unpacking fonts-dejavu-core (2.37-8) ... 3232s Selecting previously unselected package fontconfig-config. 3232s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 3233s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 3233s Selecting previously unselected package libfontconfig1:arm64. 3233s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 3233s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 3233s Selecting previously unselected package libasound2-data. 3233s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 3233s Unpacking libasound2-data (1.2.10-3build1) ... 3233s Selecting previously unselected package libasound2:arm64. 3233s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 3233s Unpacking libasound2:arm64 (1.2.10-3build1) ... 3234s Selecting previously unselected package libgraphite2-3:arm64. 3234s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 3234s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 3234s Selecting previously unselected package libharfbuzz0b:arm64. 3234s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 3234s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 3234s Selecting previously unselected package libpcsclite1:arm64. 3234s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 3234s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 3234s Selecting previously unselected package openjdk-21-jre-headless:arm64. 3234s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 3234s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 3241s Selecting previously unselected package default-jre-headless. 3241s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 3241s Unpacking default-jre-headless (2:1.21-75+exp1) ... 3241s Selecting previously unselected package libgtk2.0-common. 3242s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 3242s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 3242s Selecting previously unselected package libatk1.0-0:arm64. 3242s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 3242s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 3242s Selecting previously unselected package libpixman-1-0:arm64. 3242s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 3242s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 3242s Selecting previously unselected package libxcb-render0:arm64. 3242s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 3242s Unpacking libxcb-render0:arm64 (1.15-1) ... 3242s Selecting previously unselected package libxcb-shm0:arm64. 3242s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 3242s Unpacking libxcb-shm0:arm64 (1.15-1) ... 3242s Selecting previously unselected package libxrender1:arm64. 3242s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 3242s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 3242s Selecting previously unselected package libcairo2:arm64. 3242s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 3242s Unpacking libcairo2:arm64 (1.18.0-1) ... 3242s Selecting previously unselected package fontconfig. 3242s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 3242s Unpacking fontconfig (2.15.0-1ubuntu1) ... 3242s Selecting previously unselected package libthai-data. 3242s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 3242s Unpacking libthai-data (0.1.29-2) ... 3243s Selecting previously unselected package libdatrie1:arm64. 3243s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 3243s Unpacking libdatrie1:arm64 (0.2.13-3) ... 3243s Selecting previously unselected package libthai0:arm64. 3243s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 3243s Unpacking libthai0:arm64 (0.1.29-2) ... 3243s Selecting previously unselected package libpango-1.0-0:arm64. 3243s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 3243s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 3244s Selecting previously unselected package libpangoft2-1.0-0:arm64. 3244s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 3244s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 3244s Selecting previously unselected package libpangocairo-1.0-0:arm64. 3244s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 3244s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 3244s Selecting previously unselected package libxcomposite1:arm64. 3244s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 3244s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 3244s Selecting previously unselected package libxfixes3:arm64. 3244s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 3244s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 3244s Selecting previously unselected package libxcursor1:arm64. 3244s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 3244s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 3244s Selecting previously unselected package libxdamage1:arm64. 3244s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 3244s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 3244s Selecting previously unselected package libxi6:arm64. 3244s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 3244s Unpacking libxi6:arm64 (2:1.8.1-1) ... 3244s Selecting previously unselected package libxinerama1:arm64. 3244s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 3244s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 3244s Selecting previously unselected package libxrandr2:arm64. 3244s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 3244s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 3244s Selecting previously unselected package libgtk2.0-0:arm64. 3244s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 3244s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 3244s Selecting previously unselected package libglvnd0:arm64. 3244s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 3244s Unpacking libglvnd0:arm64 (1.7.0-1) ... 3244s Selecting previously unselected package libglapi-mesa:arm64. 3244s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 3244s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 3244s Selecting previously unselected package libx11-xcb1:arm64. 3245s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 3245s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 3245s Selecting previously unselected package libxcb-dri2-0:arm64. 3245s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 3245s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 3245s Selecting previously unselected package libxcb-dri3-0:arm64. 3245s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 3245s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 3245s Selecting previously unselected package libxcb-glx0:arm64. 3245s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 3245s Unpacking libxcb-glx0:arm64 (1.15-1) ... 3245s Selecting previously unselected package libxcb-present0:arm64. 3245s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 3245s Unpacking libxcb-present0:arm64 (1.15-1) ... 3245s Selecting previously unselected package libxcb-randr0:arm64. 3245s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 3245s Unpacking libxcb-randr0:arm64 (1.15-1) ... 3245s Selecting previously unselected package libxcb-sync1:arm64. 3245s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 3245s Unpacking libxcb-sync1:arm64 (1.15-1) ... 3245s Selecting previously unselected package libxcb-xfixes0:arm64. 3245s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 3245s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 3245s Selecting previously unselected package libxshmfence1:arm64. 3245s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 3245s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 3246s Selecting previously unselected package libxxf86vm1:arm64. 3246s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 3246s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 3246s Selecting previously unselected package libvulkan1:arm64. 3246s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 3246s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 3246s Selecting previously unselected package libdrm-amdgpu1:arm64. 3246s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 3246s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 3246s Selecting previously unselected package libdrm-nouveau2:arm64. 3246s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 3246s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 3246s Selecting previously unselected package libdrm-radeon1:arm64. 3246s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 3246s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 3246s Selecting previously unselected package libllvm17:arm64. 3246s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 3246s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 3250s Selecting previously unselected package libgl1-mesa-dri:arm64. 3250s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 3250s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 3251s Selecting previously unselected package libglx-mesa0:arm64. 3251s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 3251s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 3251s Selecting previously unselected package libglx0:arm64. 3251s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 3251s Unpacking libglx0:arm64 (1.7.0-1) ... 3251s Selecting previously unselected package libgl1:arm64. 3252s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 3252s Unpacking libgl1:arm64 (1.7.0-1) ... 3252s Selecting previously unselected package libgif7:arm64. 3252s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 3252s Unpacking libgif7:arm64 (5.2.1-2.5) ... 3252s Selecting previously unselected package x11-common. 3252s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 3252s Unpacking x11-common (1:7.7+23ubuntu2) ... 3252s Selecting previously unselected package libxtst6:arm64. 3252s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 3252s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 3252s Selecting previously unselected package openjdk-21-jre:arm64. 3252s Preparing to unpack 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... 3253s Unpacking libfreemarker-java (2.3.32-2) ... 3253s Selecting previously unselected package libgoogle-gson-java. 3253s Preparing to unpack .../086-libgoogle-gson-java_2.10.1-1_all.deb ... 3253s Unpacking libgoogle-gson-java (2.10.1-1) ... 3253s Selecting previously unselected package libjoptsimple-java. 3253s Preparing to unpack .../087-libjoptsimple-java_5.0.4-4_all.deb ... 3253s Unpacking libjoptsimple-java (5.0.4-4) ... 3253s Selecting previously unselected package libcommons-codec-java. 3253s Preparing to unpack .../088-libcommons-codec-java_1.16.0-1_all.deb ... 3253s Unpacking libcommons-codec-java (1.16.0-1) ... 3253s Selecting previously unselected package libcommons-logging-java. 3253s Preparing to unpack .../089-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 3253s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 3253s Selecting previously unselected package libhttpcore-java. 3253s Preparing to unpack .../090-libhttpcore-java_4.4.16-1_all.deb ... 3253s Unpacking libhttpcore-java (4.4.16-1) ... 3253s Selecting previously unselected package libhttpclient-java. 3253s Preparing to unpack .../091-libhttpclient-java_4.5.14-1_all.deb ... 3253s Unpacking libhttpclient-java (4.5.14-1) ... 3253s Selecting previously unselected package liblightcouch-java. 3253s Preparing to unpack .../092-liblightcouch-java_0.2.0-1_all.deb ... 3253s Unpacking liblightcouch-java (0.2.0-1) ... 3254s Selecting previously unselected package libmongodb-java. 3254s Preparing to unpack .../093-libmongodb-java_3.6.3-2_all.deb ... 3254s Unpacking libmongodb-java (3.6.3-2) ... 3254s Selecting previously unselected package libslf4j-java. 3254s Preparing to unpack .../094-libslf4j-java_1.7.32-1_all.deb ... 3254s Unpacking libslf4j-java (1.7.32-1) ... 3254s Selecting previously unselected package liblog4j2-java. 3254s Preparing to unpack .../095-liblog4j2-java_2.19.0-2_all.deb ... 3254s Unpacking liblog4j2-java (2.19.0-2) ... 3254s Selecting previously unselected package libbarclay-java. 3255s Preparing to unpack .../096-libbarclay-java_5.0.0+dfsg-1_all.deb ... 3255s Unpacking libbarclay-java (5.0.0+dfsg-1) ... 3255s Selecting previously unselected package libcommons-compress-java. 3255s Preparing to unpack .../097-libcommons-compress-java_1.25.0-1_all.deb ... 3255s Unpacking libcommons-compress-java (1.25.0-1) ... 3255s Selecting previously unselected package libcommons-io-java. 3255s Preparing to unpack .../098-libcommons-io-java_2.11.0-2_all.deb ... 3255s Unpacking libcommons-io-java (2.11.0-2) ... 3255s Selecting previously unselected package libcommons-jexl2-java. 3255s Preparing to unpack .../099-libcommons-jexl2-java_2.1.1-6_all.deb ... 3255s Unpacking libcommons-jexl2-java (2.1.1-6) ... 3255s Selecting previously unselected package libcommons-math3-java. 3255s Preparing to unpack .../100-libcommons-math3-java_3.6.1-3_all.deb ... 3255s Unpacking libcommons-math3-java (3.6.1-3) ... 3255s Selecting previously unselected package libgatk-native-bindings-java. 3255s Preparing to unpack .../101-libgatk-native-bindings-java_1.0.0+dfsg-2_all.deb ... 3255s Unpacking libgatk-native-bindings-java (1.0.0+dfsg-2) ... 3255s Selecting previously unselected package libmjson-java. 3256s Preparing to unpack .../102-libmjson-java_1.4.0-3_all.deb ... 3256s Unpacking libmjson-java (1.4.0-3) ... 3256s Selecting previously unselected package libmbedcrypto7:arm64. 3256s Preparing to unpack .../103-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 3256s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 3256s Selecting previously unselected package libmbedx509-1:arm64. 3256s Preparing to unpack .../104-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 3256s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 3256s Selecting previously unselected package libmbedtls14:arm64. 3256s Preparing to unpack .../105-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 3256s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 3256s Selecting previously unselected package ncbi-vdb-data. 3256s Preparing to unpack .../106-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 3256s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 3256s Selecting previously unselected package libncbi-vdb3:arm64. 3256s Preparing to unpack .../107-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 3256s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 3256s Selecting previously unselected package libncbi-ngs3:arm64. 3256s Preparing to unpack .../108-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3256s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 3256s Selecting previously unselected package libngs-jni:arm64. 3256s Preparing to unpack .../109-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3256s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 3256s Selecting previously unselected package libngs-java:arm64. 3256s Preparing to unpack .../110-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3256s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 3257s Selecting previously unselected package librhino-java. 3257s Preparing to unpack .../111-librhino-java_1.7.14-2.1_all.deb ... 3257s Unpacking librhino-java (1.7.14-2.1) ... 3257s Selecting previously unselected package libsnappy1v5:arm64. 3257s Preparing to unpack .../112-libsnappy1v5_1.1.10-1_arm64.deb ... 3257s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 3257s Selecting previously unselected package libsnappy-jni. 3257s Preparing to unpack .../113-libsnappy-jni_1.1.10.5-1_arm64.deb ... 3257s Unpacking libsnappy-jni (1.1.10.5-1) ... 3257s Selecting previously unselected package libsnappy-java. 3257s Preparing to unpack .../114-libsnappy-java_1.1.10.5-1_all.deb ... 3257s Unpacking libsnappy-java (1.1.10.5-1) ... 3257s Selecting previously unselected package libhtsjdk-java. 3257s Preparing to unpack .../115-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 3257s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 3257s Selecting previously unselected package libgkl-java. 3257s Preparing to unpack .../116-libgkl-java_0.8.11+dfsg-2_all.deb ... 3257s Unpacking libgkl-java (0.8.11+dfsg-2) ... 3257s Selecting previously unselected package libpicard-java. 3257s Preparing to unpack .../117-libpicard-java_3.1.1+dfsg-1_all.deb ... 3257s Unpacking libpicard-java (3.1.1+dfsg-1) ... 3257s Selecting previously unselected package picard-tools. 3258s Preparing to unpack .../118-picard-tools_3.1.1+dfsg-1_all.deb ... 3258s Unpacking picard-tools (3.1.1+dfsg-1) ... 3258s Selecting previously unselected package autopkgtest-satdep. 3258s Preparing to unpack .../119-7-autopkgtest-satdep.deb ... 3258s Unpacking autopkgtest-satdep (0) ... 3258s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 3258s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 3258s Setting up liblcms2-2:arm64 (2.14-2) ... 3258s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 3258s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 3258s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 3258s Setting up libslf4j-java (1.7.32-1) ... 3258s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 3258s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 3258s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 3258s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 3258s Setting up hicolor-icon-theme (0.17-2) ... 3258s Setting up libxi6:arm64 (2:1.8.1-1) ... 3258s Setting up libgatk-native-bindings-java (1.0.0+dfsg-2) ... 3258s Setting up java-common (0.75+exp1) ... 3258s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 3258s Setting up libdatrie1:arm64 (0.2.13-3) ... 3258s Setting up libxcb-render0:arm64 (1.15-1) ... 3258s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 3258s Setting up libglvnd0:arm64 (1.7.0-1) ... 3258s Setting up libgoogle-gson-java (2.10.1-1) ... 3258s Setting up libmjson-java (1.4.0-3) ... 3258s Setting up libxcb-glx0:arm64 (1.15-1) ... 3258s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 3258s Setting up x11-common (1:7.7+23ubuntu2) ... 3260s Setting up libdeflate0:arm64 (1.19-1) ... 3260s Setting up libxcb-shm0:arm64 (1.15-1) ... 3260s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 3260s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 3260s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 3260s Setting up libxcb-present0:arm64 (1.15-1) ... 3260s Setting up libasound2-data (1.2.10-3build1) ... 3260s Setting up librhino-java (1.7.14-2.1) ... 3260s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 3260s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 3260s Setting up libxcb-sync1:arm64 (1.15-1) ... 3260s Setting up libapache-pom-java (29-2) ... 3260s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 3260s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 3260s Setting up fonts-dejavu-mono (2.37-8) ... 3260s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 3260s Setting up fonts-dejavu-core (2.37-8) ... 3260s Setting up libpcsclite1:arm64 (2.0.0-1) ... 3260s Setting up libmongodb-java (3.6.3-2) ... 3260s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 3260s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 3260s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 3260s Setting up libwebp7:arm64 (1.3.2-0.4) ... 3260s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 3260s Setting up libgif7:arm64 (5.2.1-2.5) ... 3260s Setting up libfreemarker-java (2.3.32-2) ... 3260s Setting up libxshmfence1:arm64 (1.3-1build4) ... 3260s Setting up at-spi2-common (2.50.0-1) ... 3260s Setting up libxcb-randr0:arm64 (1.15-1) ... 3260s Setting up libasound2:arm64 (1.2.10-3build1) ... 3260s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 3260s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 3260s Setting up libthai-data (0.1.29-2) ... 3260s Setting up libcommons-math3-java (3.6.1-3) ... 3260s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 3260s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 3260s Setting up libhttpcore-java (4.4.16-1) ... 3260s Setting up libjoptsimple-java (5.0.4-4) ... 3260s Setting up ca-certificates-java (20240118) ... 3260s No JRE found. Skipping Java certificates setup. 3260s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 3260s Setting up libsnappy-jni (1.1.10.5-1) ... 3260s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 3260s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 3260s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 3260s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 3260s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 3260s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 3261s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 3261s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 3261s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 3261s Setting up libcommons-parent-java (56-1) ... 3261s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 3261s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 3261s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 3261s Setting up libcommons-jexl2-java (2.1.1-6) ... 3261s Setting up libthai0:arm64 (0.1.29-2) ... 3261s Setting up libcommons-lang3-java (3.14.0-1) ... 3261s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 3261s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 3261s Setting up libsnappy-java (1.1.10.5-1) ... 3261s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 3261s Setting up libcommons-codec-java (1.16.0-1) ... 3261s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 3261s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 3261s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 3261s Setting up fontconfig (2.15.0-1ubuntu1) ... 3263s Regenerating fonts cache... done. 3263s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 3263s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 3263s Setting up libglx0:arm64 (1.7.0-1) ... 3263s Setting up libcommons-compress-java (1.25.0-1) ... 3263s Setting up libcommons-io-java (2.11.0-2) ... 3263s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 3263s Setting up libcairo2:arm64 (1.18.0-1) ... 3263s Setting up libgl1:arm64 (1.7.0-1) ... 3263s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 3263s Setting up libhttpclient-java (4.5.14-1) ... 3263s Setting up liblightcouch-java (0.2.0-1) ... 3263s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 3263s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 3263s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 3263s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 3263s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 3263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 3263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 3263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 3263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 3263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 3263s Setting up liblog4j2-java (2.19.0-2) ... 3263s Setting up libbarclay-java (5.0.0+dfsg-1) ... 3263s Setting up libgkl-java (0.8.11+dfsg-2) ... 3263s Setting up libpicard-java (3.1.1+dfsg-1) ... 3263s Setting up adwaita-icon-theme (46~rc-1) ... 3263s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 3263s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 3263s Setting up humanity-icon-theme (0.6.16) ... 3264s Setting up ubuntu-mono (24.04-0ubuntu1) ... 3264s Processing triggers for man-db (2.12.0-3) ... 3266s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3266s Processing triggers for ca-certificates-java (20240118) ... 3267s Adding debian:ACCVRAIZ1.pem 3267s Adding debian:AC_RAIZ_FNMT-RCM.pem 3268s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 3268s Adding debian:ANF_Secure_Server_Root_CA.pem 3268s Adding debian:Actalis_Authentication_Root_CA.pem 3268s Adding debian:AffirmTrust_Commercial.pem 3268s Adding debian:AffirmTrust_Networking.pem 3268s Adding debian:AffirmTrust_Premium.pem 3268s Adding debian:AffirmTrust_Premium_ECC.pem 3268s Adding debian:Amazon_Root_CA_1.pem 3268s Adding debian:Amazon_Root_CA_2.pem 3268s Adding debian:Amazon_Root_CA_3.pem 3268s Adding debian:Amazon_Root_CA_4.pem 3268s Adding debian:Atos_TrustedRoot_2011.pem 3268s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 3268s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 3268s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 3268s Adding debian:BJCA_Global_Root_CA1.pem 3268s Adding debian:BJCA_Global_Root_CA2.pem 3268s Adding debian:Baltimore_CyberTrust_Root.pem 3268s Adding debian:Buypass_Class_2_Root_CA.pem 3268s Adding debian:Buypass_Class_3_Root_CA.pem 3268s Adding debian:CA_Disig_Root_R2.pem 3268s Adding debian:CFCA_EV_ROOT.pem 3268s Adding debian:COMODO_Certification_Authority.pem 3268s Adding debian:COMODO_ECC_Certification_Authority.pem 3268s Adding debian:COMODO_RSA_Certification_Authority.pem 3268s Adding debian:Certainly_Root_E1.pem 3268s Adding debian:Certainly_Root_R1.pem 3268s Adding debian:Certigna.pem 3268s Adding debian:Certigna_Root_CA.pem 3268s Adding debian:Certum_EC-384_CA.pem 3268s Adding debian:Certum_Trusted_Network_CA.pem 3268s Adding debian:Certum_Trusted_Network_CA_2.pem 3268s Adding debian:Certum_Trusted_Root_CA.pem 3268s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 3268s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 3268s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 3268s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 3268s Adding debian:Comodo_AAA_Services_root.pem 3268s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 3268s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 3268s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 3268s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 3268s Adding debian:DigiCert_Assured_ID_Root_CA.pem 3268s Adding debian:DigiCert_Assured_ID_Root_G2.pem 3268s Adding debian:DigiCert_Assured_ID_Root_G3.pem 3268s Adding debian:DigiCert_Global_Root_CA.pem 3268s Adding debian:DigiCert_Global_Root_G2.pem 3268s Adding debian:DigiCert_Global_Root_G3.pem 3268s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 3268s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 3268s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 3268s Adding debian:DigiCert_Trusted_Root_G4.pem 3268s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 3268s Adding debian:Entrust_Root_Certification_Authority.pem 3268s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 3268s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 3268s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 3268s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 3268s Adding debian:GLOBALTRUST_2020.pem 3268s Adding debian:GTS_Root_R1.pem 3268s Adding debian:GTS_Root_R2.pem 3268s Adding debian:GTS_Root_R3.pem 3268s Adding debian:GTS_Root_R4.pem 3268s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 3268s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 3268s Adding debian:GlobalSign_Root_CA.pem 3268s Adding debian:GlobalSign_Root_CA_-_R3.pem 3268s Adding debian:GlobalSign_Root_CA_-_R6.pem 3269s Adding debian:GlobalSign_Root_E46.pem 3269s Adding debian:GlobalSign_Root_R46.pem 3269s Adding debian:Go_Daddy_Class_2_CA.pem 3269s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 3269s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 3269s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 3269s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 3269s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 3269s Adding debian:HiPKI_Root_CA_-_G1.pem 3269s Adding debian:Hongkong_Post_Root_CA_3.pem 3269s Adding debian:ISRG_Root_X1.pem 3269s Adding debian:ISRG_Root_X2.pem 3269s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 3269s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 3269s Adding debian:Izenpe.com.pem 3269s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 3269s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 3269s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 3269s Adding debian:NAVER_Global_Root_Certification_Authority.pem 3269s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 3269s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 3269s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 3269s Adding debian:QuoVadis_Root_CA_1_G3.pem 3269s Adding debian:QuoVadis_Root_CA_2.pem 3269s Adding debian:QuoVadis_Root_CA_2_G3.pem 3269s Adding debian:QuoVadis_Root_CA_3.pem 3269s Adding debian:QuoVadis_Root_CA_3_G3.pem 3269s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 3269s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 3269s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 3269s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 3269s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 3269s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 3269s Adding debian:SZAFIR_ROOT_CA2.pem 3269s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 3269s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 3269s Adding debian:SecureSign_RootCA11.pem 3269s Adding debian:SecureTrust_CA.pem 3269s Adding debian:Secure_Global_CA.pem 3269s Adding debian:Security_Communication_ECC_RootCA1.pem 3269s Adding debian:Security_Communication_RootCA2.pem 3269s Adding debian:Security_Communication_RootCA3.pem 3269s Adding debian:Security_Communication_Root_CA.pem 3269s Adding debian:Starfield_Class_2_CA.pem 3269s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 3269s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 3269s Adding debian:SwissSign_Gold_CA_-_G2.pem 3269s Adding debian:SwissSign_Silver_CA_-_G2.pem 3269s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 3269s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 3269s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 3269s Adding debian:TWCA_Global_Root_CA.pem 3269s Adding debian:TWCA_Root_Certification_Authority.pem 3269s Adding debian:TeliaSonera_Root_CA_v1.pem 3269s Adding debian:Telia_Root_CA_v2.pem 3269s Adding debian:TrustAsia_Global_Root_CA_G3.pem 3269s Adding debian:TrustAsia_Global_Root_CA_G4.pem 3269s Adding debian:Trustwave_Global_Certification_Authority.pem 3269s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 3269s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 3270s Adding debian:TunTrust_Root_CA.pem 3270s Adding debian:UCA_Extended_Validation_Root.pem 3270s Adding debian:UCA_Global_G2_Root.pem 3270s Adding debian:USERTrust_ECC_Certification_Authority.pem 3270s Adding debian:USERTrust_RSA_Certification_Authority.pem 3270s Adding debian:XRamp_Global_CA_Root.pem 3270s Adding debian:certSIGN_ROOT_CA.pem 3270s Adding debian:certSIGN_Root_CA_G2.pem 3270s Adding debian:e-Szigno_Root_CA_2017.pem 3270s Adding debian:ePKI_Root_Certification_Authority.pem 3270s Adding debian:emSign_ECC_Root_CA_-_C3.pem 3270s Adding debian:emSign_ECC_Root_CA_-_G3.pem 3270s Adding debian:emSign_Root_CA_-_C1.pem 3270s Adding debian:emSign_Root_CA_-_G1.pem 3270s Adding debian:vTrus_ECC_Root_CA.pem 3270s Adding debian:vTrus_Root_CA.pem 3270s done. 3270s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 3270s Setting up default-jre-headless (2:1.21-75+exp1) ... 3270s Setting up default-jre (2:1.21-75+exp1) ... 3270s Setting up picard-tools (3.1.1+dfsg-1) ... 3270s Setting up autopkgtest-satdep (0) ... 3283s (Reading database ... 89966 files and directories currently installed.) 3283s Removing autopkgtest-satdep (0) ... 3290s autopkgtest [19:17:06]: test picard-tools-run-unit-test: [----------------------- 3291s JavOpt: 3291s PicardProg: ViewSam 3291s PicardOpts: PF_STATUS=All ALIGNMENT_STATUS=All INPUT=unmapped.sam 3297s INFO 2024-03-24 19:17:13 ViewSam 3298s 3298s ********** NOTE: Picard's command line syntax is changing. 3298s ********** 3298s ********** For more information, please see: 3298s ********** 3298s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 3298s ********** 3298s ********** The command line looks like this in the new syntax: 3298s ********** 3298s ********** ViewSam -PF_STATUS All -ALIGNMENT_STATUS All -INPUT unmapped.sam 3298s ********** 3298s 3298s 3298s 19:17:14.178 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3298s 19:17:14.195 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 3298s 19:17:14.197 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3298s 19:17:14.206 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3298s 19:17:14.211 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 3298s 19:17:14.212 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3298s [Sun Mar 24 19:17:14 UTC 2024] ViewSam INPUT=unmapped.sam ALIGNMENT_STATUS=All PF_STATUS=All HEADER_ONLY=false RECORDS_ONLY=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 3298s [Sun Mar 24 19:17:14 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 3.1.1 3298s @HD VN:1.0 SO:queryname 3298s @RG ID:0 SM:Hi,Mom! PL:ILLUMINA 3298s both_reads_align_clip_adapter 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s both_reads_align_clip_adapter 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s both_reads_align_clip_marked 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 XT:i:97 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s both_reads_align_clip_marked 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 XT:i:97 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s both_reads_present_only_first_aligns 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s both_reads_present_only_first_aligns 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s neither_read_aligns_or_present 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s neither_read_aligns_or_present 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s read_2_too_many_gaps 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s read_2_too_many_gaps 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 3298s [Sun Mar 24 19:17:14 UTC 2024] picard.sam.ViewSam done. Elapsed time: 0.01 minutes. 3298s Runtime.totalMemory()=24379392 3298s JavOpt: 3298s PicardProg: CollectSequencingArtifactMetrics 3298s PicardOpts: I=test.sam O=test R=test.fasta 3304s INFO 2024-03-24 19:17:20 CollectSequencingArtifactMetrics 3304s 3304s ********** NOTE: Picard's command line syntax is changing. 3304s ********** 3304s ********** For more information, please see: 3304s ********** 3304s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 3304s ********** 3304s ********** The command line looks like this in the new syntax: 3304s ********** 3304s ********** CollectSequencingArtifactMetrics -I test.sam -O test -R test.fasta 3304s ********** 3304s 3304s 3305s 19:17:21.039 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3305s 19:17:21.046 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 3305s 19:17:21.048 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3305s 19:17:21.053 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3305s 19:17:21.054 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 3305s 19:17:21.055 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3305s [Sun Mar 24 19:17:21 UTC 2024] CollectSequencingArtifactMetrics INPUT=test.sam OUTPUT=test REFERENCE_SEQUENCE=test.fasta MINIMUM_QUALITY_SCORE=20 MINIMUM_MAPPING_QUALITY=30 MINIMUM_INSERT_SIZE=60 MAXIMUM_INSERT_SIZE=600 INCLUDE_UNPAIRED=false INCLUDE_DUPLICATES=false INCLUDE_NON_PF_READS=false TANDEM_READS=false USE_OQ=true CONTEXT_SIZE=1 ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 3305s [Sun Mar 24 19:17:21 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 3.1.1 3306s [Sun Mar 24 19:17:21 UTC 2024] picard.analysis.artifacts.CollectSequencingArtifactMetrics done. Elapsed time: 0.02 minutes. 3306s Runtime.totalMemory()=24379392 3306s All output files generated 3306s JavOpt: 3306s PicardProg: SortVcf 3306s PicardOpts: I=mini.vcf O=mini_sorted.vcf 3312s INFO 2024-03-24 19:17:28 SortVcf 3312s 3312s ********** NOTE: Picard's command line syntax is changing. 3312s ********** 3312s ********** For more information, please see: 3312s ********** 3312s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 3312s ********** 3312s ********** The command line looks like this in the new syntax: 3312s ********** 3312s ********** SortVcf -I mini.vcf -O mini_sorted.vcf 3312s ********** 3312s 3312s 3312s 19:17:28.594 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3312s 19:17:28.612 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 3312s 19:17:28.614 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3312s 19:17:28.628 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3312s 19:17:28.628 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 3312s 19:17:28.629 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3312s [Sun Mar 24 19:17:28 UTC 2024] SortVcf INPUT=[mini.vcf] OUTPUT=mini_sorted.vcf VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=true CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 3312s [Sun Mar 24 19:17:28 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 3.1.1 3313s INFO 2024-03-24 19:17:29 SortVcf Reading entries from input file 1 3315s [Sun Mar 24 19:17:31 UTC 2024] picard.vcf.SortVcf done. Elapsed time: 0.06 minutes. 3315s Runtime.totalMemory()=24379392 3316s sorted vcf generated 3316s JavOpt: 3316s PicardProg: SplitVcfs 3316s PicardOpts: I=mini.vcf SNP_OUTPUT=snp.vcf INDEL_OUTPUT=indel.vcf 3322s INFO 2024-03-24 19:17:38 SplitVcfs 3322s 3322s ********** NOTE: Picard's command line syntax is changing. 3322s ********** 3322s ********** For more information, please see: 3322s ********** 3322s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 3322s ********** 3322s ********** The command line looks like this in the new syntax: 3322s ********** 3322s ********** SplitVcfs -I mini.vcf -SNP_OUTPUT snp.vcf -INDEL_OUTPUT indel.vcf 3322s ********** 3322s 3322s 3322s 19:17:38.425 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3322s 19:17:38.433 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 3322s 19:17:38.434 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3322s 19:17:38.439 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3322s 19:17:38.441 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 3322s 19:17:38.443 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 3322s [Sun Mar 24 19:17:38 UTC 2024] SplitVcfs INPUT=mini.vcf SNP_OUTPUT=snp.vcf INDEL_OUTPUT=indel.vcf STRICT=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=true CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 3322s [Sun Mar 24 19:17:38 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 3.1.1 3325s [Sun Mar 24 19:17:41 UTC 2024] picard.vcf.SplitVcfs done. Elapsed time: 0.05 minutes. 3325s Runtime.totalMemory()=24379392 3325s snp and indel vcfs generated 3325s autopkgtest [19:17:41]: test picard-tools-run-unit-test: -----------------------] 3326s autopkgtest [19:17:42]: test picard-tools-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 3326s picard-tools-run-unit-test PASS 3326s autopkgtest [19:17:42]: test pilon-run-unit-test: preparing testbed 3430s autopkgtest [19:19:26]: testbed dpkg architecture: arm64 3430s autopkgtest [19:19:26]: testbed apt version: 2.7.12 3430s autopkgtest [19:19:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 3431s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 3432s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 3432s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 3432s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4007 kB] 3432s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 3432s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 3433s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 3433s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 3433s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 3433s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 3433s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 3433s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 3433s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 3438s Fetched 9869 kB in 3s (3350 kB/s) 3439s Reading package lists... 3443s Reading package lists... 3443s Building dependency tree... 3443s Reading state information... 3444s Calculating upgrade... 3445s The following packages will be REMOVED: 3445s libmagic1 libssl3 3445s The following NEW packages will be installed: 3445s libmagic1t64 libssl3t64 3445s The following packages have been kept back: 3445s curl 3445s The following packages will be upgraded: 3445s file libmagic-mgc openssl 3445s 3 upgraded, 2 newly installed, 2 to remove and 1 not upgraded. 3445s Need to get 3192 kB of archives. 3445s After this operation, 145 kB of additional disk space will be used. 3445s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 3445s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 3446s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 3446s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 3446s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 3447s Fetched 3192 kB in 1s (4583 kB/s) 3447s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 3447s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 3447s Unpacking file (1:5.45-3) over (1:5.45-2) ... 3447s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 3447s Removing libmagic1:arm64 (1:5.45-2) ... 3447s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 3447s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 3447s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 3447s Selecting previously unselected package libmagic1t64:arm64. 3447s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 3447s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 3447s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 3447s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 3448s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 3448s wget depends on libssl3 (>= 3.0.0). 3448s u-boot-tools depends on libssl3 (>= 3.0.0). 3448s tnftp depends on libssl3 (>= 3.0.0). 3448s tcpdump depends on libssl3 (>= 3.0.0). 3448s systemd-resolved depends on libssl3 (>= 3.0.0). 3448s systemd depends on libssl3 (>= 3.0.0). 3448s sudo depends on libssl3 (>= 3.0.0). 3448s sbsigntool depends on libssl3 (>= 3.0.0). 3448s rsync depends on libssl3 (>= 3.0.0). 3448s python3-cryptography depends on libssl3 (>= 3.0.0). 3448s openssh-server depends on libssl3 (>= 3.0.10). 3448s openssh-client depends on libssl3 (>= 3.0.10). 3448s mtd-utils depends on libssl3 (>= 3.0.0). 3448s mokutil depends on libssl3 (>= 3.0.0). 3448s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 3448s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 3448s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 3448s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 3448s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 3448s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 3448s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 3448s libnvme1 depends on libssl3 (>= 3.0.0). 3448s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 3448s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 3448s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 3448s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 3448s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 3448s kmod depends on libssl3 (>= 3.0.0). 3448s dhcpcd-base depends on libssl3 (>= 3.0.0). 3448s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 3448s 3448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75912 files and directories currently installed.) 3448s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 3448s Selecting previously unselected package libssl3t64:arm64. 3448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 3448s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 3448s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 3448s Setting up libmagic-mgc (1:5.45-3) ... 3448s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 3448s Setting up libmagic1t64:arm64 (1:5.45-3) ... 3448s Setting up file (1:5.45-3) ... 3448s Setting up openssl (3.0.13-0ubuntu2) ... 3448s Processing triggers for man-db (2.12.0-3) ... 3449s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3450s Reading package lists... 3450s Building dependency tree... 3450s Reading state information... 3451s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 3453s sh: Attempting to set up Debian/Ubuntu apt sources automatically 3453s sh: Distribution appears to be Ubuntu 3454s Reading package lists... 3455s Building dependency tree... 3455s Reading state information... 3456s eatmydata is already the newest version (131-1). 3456s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3456s Reading package lists... 3457s Building dependency tree... 3457s Reading state information... 3458s dbus is already the newest version (1.14.10-4ubuntu1). 3458s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3458s Reading package lists... 3458s Building dependency tree... 3458s Reading state information... 3459s rng-tools-debian is already the newest version (2.4). 3459s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3459s Reading package lists... 3460s Building dependency tree... 3460s Reading state information... 3461s The following packages will be REMOVED: 3461s cloud-init* python3-configobj* python3-debconf* 3462s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 3462s After this operation, 3256 kB disk space will be freed. 3462s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 3462s Removing cloud-init (24.1.2-0ubuntu1) ... 3463s Removing python3-configobj (5.0.8-3) ... 3463s Removing python3-debconf (1.5.86) ... 3463s Processing triggers for man-db (2.12.0-3) ... 3464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75525 files and directories currently installed.) 3464s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 3466s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 3466s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 3466s invoke-rc.d: policy-rc.d denied execution of try-restart. 3466s Reading package lists... 3466s Building dependency tree... 3466s Reading state information... 3468s linux-generic is already the newest version (6.8.0-11.11+1). 3468s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3468s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 3468s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 3468s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 3474s Reading package lists... 3474s Reading package lists... 3474s Building dependency tree... 3474s Reading state information... 3475s Calculating upgrade... 3477s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3477s Reading package lists... 3477s Building dependency tree... 3477s Reading state information... 3478s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3478s autopkgtest [19:20:14]: rebooting testbed after setup commands that affected boot 3639s Reading package lists... 3639s Building dependency tree... 3639s Reading state information... 3640s Starting pkgProblemResolver with broken count: 0 3640s Starting 2 pkgProblemResolver with broken count: 0 3640s Done 3641s The following additional packages will be installed: 3641s adwaita-icon-theme at-spi2-common ca-certificates-java default-jre 3641s default-jre-headless fontconfig fontconfig-config fonts-dejavu-core 3641s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 3641s humanity-icon-theme java-common java-wrappers libapache-pom-java libasound2 3641s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 3641s libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java 3641s libcommons-lang-java libcommons-logging-java libcommons-parent-java libcups2 3641s libdatrie1 libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 3641s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 3641s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 3641s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 3641s libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 3641s libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 3641s libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 3641s libpcsclite1 libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java 3641s libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 3641s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 3641s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 3641s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 3641s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 3641s openjdk-21-jre openjdk-21-jre-headless pilon scala-library ubuntu-mono unzip 3641s x11-common 3641s Suggested packages: 3641s libasound2-plugins alsa-utils libasm-java libxz-java 3641s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 3641s liblog4j1.2-java cups-common gvfs picard-tools liblcms2-utils 3641s libngs-java-doc pcscd rhino libnss-mdns fonts-dejavu-extra 3641s fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei 3641s | fonts-wqy-zenhei fonts-indic zip 3641s Recommended packages: 3641s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 3641s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 3641s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 3641s The following NEW packages will be installed: 3641s adwaita-icon-theme at-spi2-common autopkgtest-satdep ca-certificates-java 3641s default-jre default-jre-headless fontconfig fontconfig-config 3641s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 3641s humanity-icon-theme java-common java-wrappers libapache-pom-java libasound2 3641s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 3641s libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java 3641s libcommons-lang-java libcommons-logging-java libcommons-parent-java libcups2 3641s libdatrie1 libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 3641s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 3641s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 3641s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 3641s libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 3641s libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 3641s libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 3641s libpcsclite1 libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java 3641s libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 3641s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 3641s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 3641s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 3641s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 3641s openjdk-21-jre openjdk-21-jre-headless pilon scala-library ubuntu-mono unzip 3641s x11-common 3641s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. 3641s Need to get 107 MB/107 MB of archives. 3641s After this operation, 446 MB of additional disk space will be used. 3641s Get:1 /tmp/autopkgtest.opYCPy/8-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 3642s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 3642s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 3642s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 3642s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 3642s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 3642s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 3642s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 3642s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 3642s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 3642s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 3642s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 3642s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 3642s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 3642s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 3642s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 3642s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 3642s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 3642s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 3642s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 3642s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 3642s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 3642s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 3642s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 3642s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 3642s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 3642s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 3642s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 3642s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 3642s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 3642s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 3642s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 3642s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 3642s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 3644s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 3644s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 3644s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 3644s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 3644s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 3644s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 3644s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 3644s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 3644s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 3644s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 3644s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 3644s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 3644s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 3644s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 3644s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 3644s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 3644s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 3644s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 3644s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 3644s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 3644s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 3644s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 3644s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 3644s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 3644s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 3644s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 3644s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 3644s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 3644s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 3644s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 3644s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 3644s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 3644s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 3644s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 3644s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 3644s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 3644s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 3644s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 3644s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 3644s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 3645s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 3645s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 3645s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 3645s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 3645s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 3645s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 3645s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 3645s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 3645s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 3645s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 3645s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 java-wrappers all 0.4 [8662 B] 3645s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 3645s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 3645s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 3645s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 3645s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 3645s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 3645s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 3645s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 3645s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 3645s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 3645s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 3645s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 3645s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 3645s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 3645s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 3645s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 3645s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 3645s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 3645s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 3646s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 3646s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 scala-library all 2.11.12-5 [9586 kB] 3646s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 pilon all 1.24-3 [495 kB] 3647s Fetched 107 MB in 5s (21.5 MB/s) 3647s Selecting previously unselected package libgdk-pixbuf2.0-common. 3648s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75470 files and directories currently installed.) 3648s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 3648s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 3648s Selecting previously unselected package libjpeg-turbo8:arm64. 3648s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 3648s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 3648s Selecting previously unselected package libjpeg8:arm64. 3648s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 3648s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 3648s Selecting previously unselected package libdeflate0:arm64. 3648s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 3648s Unpacking libdeflate0:arm64 (1.19-1) ... 3648s Selecting previously unselected package libjbig0:arm64. 3648s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 3648s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 3648s Selecting previously unselected package liblerc4:arm64. 3648s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 3648s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 3648s Selecting previously unselected package libsharpyuv0:arm64. 3648s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 3648s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 3648s Selecting previously unselected package libwebp7:arm64. 3648s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 3648s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 3648s Selecting previously unselected package libtiff6:arm64. 3648s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 3648s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 3648s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 3648s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 3648s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 3648s Selecting previously unselected package gtk-update-icon-cache. 3648s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 3648s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 3648s Selecting previously unselected package hicolor-icon-theme. 3648s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 3648s Unpacking hicolor-icon-theme (0.17-2) ... 3649s Selecting previously unselected package humanity-icon-theme. 3649s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 3649s Unpacking humanity-icon-theme (0.6.16) ... 3651s Selecting previously unselected package ubuntu-mono. 3651s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 3651s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 3652s Selecting previously unselected package adwaita-icon-theme. 3652s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 3652s Unpacking adwaita-icon-theme (46~rc-1) ... 3653s Selecting previously unselected package at-spi2-common. 3653s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 3653s Unpacking at-spi2-common (2.50.0-1) ... 3653s Selecting previously unselected package ca-certificates-java. 3653s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 3653s Unpacking ca-certificates-java (20240118) ... 3653s Selecting previously unselected package java-common. 3653s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 3653s Unpacking java-common (0.75+exp1) ... 3653s Selecting previously unselected package libavahi-common-data:arm64. 3653s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 3653s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 3653s Selecting previously unselected package libavahi-common3:arm64. 3653s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 3653s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 3653s Selecting previously unselected package libavahi-client3:arm64. 3653s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 3653s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 3653s Selecting previously unselected package libcups2:arm64. 3653s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 3653s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 3653s Selecting previously unselected package liblcms2-2:arm64. 3653s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 3653s Unpacking liblcms2-2:arm64 (2.14-2) ... 3653s Selecting previously unselected package fonts-dejavu-mono. 3653s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 3653s Unpacking fonts-dejavu-mono (2.37-8) ... 3653s Selecting previously unselected package fonts-dejavu-core. 3653s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 3653s Unpacking fonts-dejavu-core (2.37-8) ... 3653s Selecting previously unselected package fontconfig-config. 3653s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 3654s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 3654s Selecting previously unselected package libfontconfig1:arm64. 3654s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 3654s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 3654s Selecting previously unselected package libasound2-data. 3654s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 3654s Unpacking libasound2-data (1.2.10-3build1) ... 3654s Selecting previously unselected package libasound2:arm64. 3654s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 3654s Unpacking libasound2:arm64 (1.2.10-3build1) ... 3654s Selecting previously unselected package libgraphite2-3:arm64. 3654s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 3654s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 3654s Selecting previously unselected package libharfbuzz0b:arm64. 3654s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 3654s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 3654s Selecting previously unselected package libpcsclite1:arm64. 3654s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 3654s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 3654s Selecting previously unselected package openjdk-21-jre-headless:arm64. 3654s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 3654s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 3657s Selecting previously unselected package default-jre-headless. 3657s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 3657s Unpacking default-jre-headless (2:1.21-75+exp1) ... 3658s Selecting previously unselected package libgtk2.0-common. 3658s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 3658s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 3658s Selecting previously unselected package libatk1.0-0:arm64. 3658s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 3658s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 3658s Selecting previously unselected package libpixman-1-0:arm64. 3658s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 3658s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 3658s Selecting previously unselected package libxcb-render0:arm64. 3658s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 3658s Unpacking libxcb-render0:arm64 (1.15-1) ... 3658s Selecting previously unselected package libxcb-shm0:arm64. 3658s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 3658s Unpacking libxcb-shm0:arm64 (1.15-1) ... 3658s Selecting previously unselected package libxrender1:arm64. 3658s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 3658s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 3658s Selecting previously unselected package libcairo2:arm64. 3658s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 3658s Unpacking libcairo2:arm64 (1.18.0-1) ... 3658s Selecting previously unselected package fontconfig. 3658s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 3658s Unpacking fontconfig (2.15.0-1ubuntu1) ... 3658s Selecting previously unselected package libthai-data. 3658s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 3658s Unpacking libthai-data (0.1.29-2) ... 3658s Selecting previously unselected package libdatrie1:arm64. 3658s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 3658s Unpacking libdatrie1:arm64 (0.2.13-3) ... 3658s Selecting previously unselected package libthai0:arm64. 3658s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 3658s Unpacking libthai0:arm64 (0.1.29-2) ... 3658s Selecting previously unselected package libpango-1.0-0:arm64. 3658s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 3658s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 3658s Selecting previously unselected package libpangoft2-1.0-0:arm64. 3658s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 3658s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 3658s Selecting previously unselected package libpangocairo-1.0-0:arm64. 3658s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 3658s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 3659s Selecting previously unselected package libxcomposite1:arm64. 3659s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 3659s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 3659s Selecting previously unselected package libxfixes3:arm64. 3659s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 3659s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 3659s Selecting previously unselected package libxcursor1:arm64. 3659s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 3659s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 3659s Selecting previously unselected package libxdamage1:arm64. 3659s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 3659s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 3659s Selecting previously unselected package libxi6:arm64. 3659s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 3659s Unpacking libxi6:arm64 (2:1.8.1-1) ... 3659s Selecting previously unselected package libxinerama1:arm64. 3659s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 3659s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 3659s Selecting previously unselected package libxrandr2:arm64. 3659s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 3659s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 3659s Selecting previously unselected package libgtk2.0-0:arm64. 3659s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 3659s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 3659s Selecting previously unselected package libglvnd0:arm64. 3659s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 3659s Unpacking libglvnd0:arm64 (1.7.0-1) ... 3659s Selecting previously unselected package libglapi-mesa:arm64. 3659s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 3659s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 3659s Selecting previously unselected package libx11-xcb1:arm64. 3659s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 3659s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 3659s Selecting previously unselected package libxcb-dri2-0:arm64. 3659s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 3659s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 3659s Selecting previously unselected package libxcb-dri3-0:arm64. 3659s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 3659s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 3660s Selecting previously unselected package libxcb-glx0:arm64. 3660s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 3660s Unpacking libxcb-glx0:arm64 (1.15-1) ... 3660s Selecting previously unselected package libxcb-present0:arm64. 3660s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 3660s Unpacking libxcb-present0:arm64 (1.15-1) ... 3660s Selecting previously unselected package libxcb-randr0:arm64. 3660s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 3660s Unpacking libxcb-randr0:arm64 (1.15-1) ... 3660s Selecting previously unselected package libxcb-sync1:arm64. 3660s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 3660s Unpacking libxcb-sync1:arm64 (1.15-1) ... 3660s Selecting previously unselected package libxcb-xfixes0:arm64. 3660s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 3660s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 3660s Selecting previously unselected package libxshmfence1:arm64. 3660s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 3660s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 3660s Selecting previously unselected package libxxf86vm1:arm64. 3660s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 3660s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 3660s Selecting previously unselected package libvulkan1:arm64. 3660s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 3660s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 3660s Selecting previously unselected package libdrm-amdgpu1:arm64. 3660s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 3660s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 3660s Selecting previously unselected package libdrm-nouveau2:arm64. 3660s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 3660s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 3660s Selecting previously unselected package libdrm-radeon1:arm64. 3660s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 3660s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 3660s Selecting previously unselected package libllvm17:arm64. 3660s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 3660s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 3662s Selecting previously unselected package libgl1-mesa-dri:arm64. 3662s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 3662s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 3662s Selecting previously unselected package libglx-mesa0:arm64. 3662s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 3662s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 3663s Selecting previously unselected package libglx0:arm64. 3663s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 3663s Unpacking libglx0:arm64 (1.7.0-1) ... 3663s Selecting previously unselected package libgl1:arm64. 3663s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 3663s Unpacking libgl1:arm64 (1.7.0-1) ... 3663s Selecting previously unselected package libgif7:arm64. 3663s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 3663s Unpacking libgif7:arm64 (5.2.1-2.5) ... 3663s Selecting previously unselected package x11-common. 3663s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 3663s Unpacking x11-common (1:7.7+23ubuntu2) ... 3663s Selecting previously unselected package libxtst6:arm64. 3663s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 3663s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 3663s Selecting previously unselected package openjdk-21-jre:arm64. 3663s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 3663s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 3663s Selecting previously unselected package default-jre. 3663s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 3663s Unpacking default-jre (2:1.21-75+exp1) ... 3663s Selecting previously unselected package unzip. 3663s Preparing to unpack .../082-unzip_6.0-28ubuntu3_arm64.deb ... 3663s Unpacking unzip (6.0-28ubuntu3) ... 3663s Selecting previously unselected package java-wrappers. 3663s Preparing to unpack .../083-java-wrappers_0.4_all.deb ... 3663s Unpacking java-wrappers (0.4) ... 3663s Selecting previously unselected package libapache-pom-java. 3663s Preparing to unpack .../084-libapache-pom-java_29-2_all.deb ... 3663s Unpacking libapache-pom-java (29-2) ... 3663s Selecting previously unselected package libcommons-parent-java. 3663s Preparing to unpack .../085-libcommons-parent-java_56-1_all.deb ... 3663s Unpacking libcommons-parent-java (56-1) ... 3663s Selecting previously unselected package libcommons-compress-java. 3663s Preparing to unpack .../086-libcommons-compress-java_1.25.0-1_all.deb ... 3663s Unpacking libcommons-compress-java (1.25.0-1) ... 3663s Selecting previously unselected package libcommons-logging-java. 3663s Preparing to unpack .../087-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 3663s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 3664s Selecting previously unselected package libcommons-jexl2-java. 3664s Preparing to unpack .../088-libcommons-jexl2-java_2.1.1-6_all.deb ... 3664s Unpacking libcommons-jexl2-java (2.1.1-6) ... 3664s Selecting previously unselected package libcommons-lang-java. 3664s Preparing to unpack .../089-libcommons-lang-java_2.6-10_all.deb ... 3664s Unpacking libcommons-lang-java (2.6-10) ... 3664s Selecting previously unselected package libmjson-java. 3664s Preparing to unpack .../090-libmjson-java_1.4.0-3_all.deb ... 3664s Unpacking libmjson-java (1.4.0-3) ... 3664s Selecting previously unselected package libmbedcrypto7:arm64. 3664s Preparing to unpack .../091-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 3664s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 3664s Selecting previously unselected package libmbedx509-1:arm64. 3664s Preparing to unpack .../092-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 3664s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 3664s Selecting previously unselected package libmbedtls14:arm64. 3664s Preparing to unpack .../093-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 3664s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 3664s Selecting previously unselected package ncbi-vdb-data. 3664s Preparing to unpack .../094-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 3664s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 3664s Selecting previously unselected package libncbi-vdb3:arm64. 3664s Preparing to unpack .../095-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 3664s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 3665s Selecting previously unselected package libncbi-ngs3:arm64. 3665s Preparing to unpack .../096-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3665s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 3665s Selecting previously unselected package libngs-jni:arm64. 3665s Preparing to unpack .../097-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3665s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 3665s Selecting previously unselected package libngs-java:arm64. 3665s Preparing to unpack .../098-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3665s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 3665s Selecting previously unselected package librhino-java. 3665s Preparing to unpack .../099-librhino-java_1.7.14-2.1_all.deb ... 3665s Unpacking librhino-java (1.7.14-2.1) ... 3665s Selecting previously unselected package libsnappy1v5:arm64. 3665s Preparing to unpack .../100-libsnappy1v5_1.1.10-1_arm64.deb ... 3665s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 3665s Selecting previously unselected package libsnappy-jni. 3665s Preparing to unpack .../101-libsnappy-jni_1.1.10.5-1_arm64.deb ... 3665s Unpacking libsnappy-jni (1.1.10.5-1) ... 3665s Selecting previously unselected package libsnappy-java. 3665s Preparing to unpack .../102-libsnappy-java_1.1.10.5-1_all.deb ... 3665s Unpacking libsnappy-java (1.1.10.5-1) ... 3665s Selecting previously unselected package libhtsjdk-java. 3665s Preparing to unpack .../103-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 3665s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 3665s Selecting previously unselected package scala-library. 3665s Preparing to unpack .../104-scala-library_2.11.12-5_all.deb ... 3665s Unpacking scala-library (2.11.12-5) ... 3666s Selecting previously unselected package pilon. 3666s Preparing to unpack .../105-pilon_1.24-3_all.deb ... 3666s Unpacking pilon (1.24-3) ... 3666s Selecting previously unselected package autopkgtest-satdep. 3666s Preparing to unpack .../106-8-autopkgtest-satdep.deb ... 3666s Unpacking autopkgtest-satdep (0) ... 3666s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 3666s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 3666s Setting up liblcms2-2:arm64 (2.14-2) ... 3666s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 3666s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 3666s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 3666s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 3666s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 3666s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 3666s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 3666s Setting up hicolor-icon-theme (0.17-2) ... 3666s Setting up libxi6:arm64 (2:1.8.1-1) ... 3666s Setting up java-common (0.75+exp1) ... 3666s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 3666s Setting up libdatrie1:arm64 (0.2.13-3) ... 3666s Setting up libxcb-render0:arm64 (1.15-1) ... 3666s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 3666s Setting up libglvnd0:arm64 (1.7.0-1) ... 3666s Setting up libmjson-java (1.4.0-3) ... 3666s Setting up libxcb-glx0:arm64 (1.15-1) ... 3666s Setting up unzip (6.0-28ubuntu3) ... 3666s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 3666s Setting up x11-common (1:7.7+23ubuntu2) ... 3667s Setting up libdeflate0:arm64 (1.19-1) ... 3667s Setting up scala-library (2.11.12-5) ... 3667s Setting up libxcb-shm0:arm64 (1.15-1) ... 3667s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 3667s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 3667s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 3667s Setting up libxcb-present0:arm64 (1.15-1) ... 3667s Setting up libasound2-data (1.2.10-3build1) ... 3667s Setting up librhino-java (1.7.14-2.1) ... 3667s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 3667s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 3667s Setting up libxcb-sync1:arm64 (1.15-1) ... 3667s Setting up libapache-pom-java (29-2) ... 3667s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 3667s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 3667s Setting up fonts-dejavu-mono (2.37-8) ... 3667s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 3667s Setting up fonts-dejavu-core (2.37-8) ... 3667s Setting up libpcsclite1:arm64 (2.0.0-1) ... 3667s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 3667s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 3667s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 3667s Setting up libwebp7:arm64 (1.3.2-0.4) ... 3667s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 3667s Setting up libgif7:arm64 (5.2.1-2.5) ... 3667s Setting up libxshmfence1:arm64 (1.3-1build4) ... 3667s Setting up at-spi2-common (2.50.0-1) ... 3667s Setting up libxcb-randr0:arm64 (1.15-1) ... 3667s Setting up libasound2:arm64 (1.2.10-3build1) ... 3667s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 3667s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 3667s Setting up libthai-data (0.1.29-2) ... 3667s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 3667s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 3667s Setting up ca-certificates-java (20240118) ... 3667s No JRE found. Skipping Java certificates setup. 3667s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 3667s Setting up libsnappy-jni (1.1.10.5-1) ... 3667s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 3667s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 3667s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 3667s Setting up java-wrappers (0.4) ... 3667s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 3667s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 3667s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 3668s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 3668s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 3668s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 3668s Setting up libcommons-parent-java (56-1) ... 3668s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 3668s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 3668s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 3668s Setting up libcommons-lang-java (2.6-10) ... 3668s Setting up libcommons-jexl2-java (2.1.1-6) ... 3668s Setting up libthai0:arm64 (0.1.29-2) ... 3668s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 3668s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 3668s Setting up libsnappy-java (1.1.10.5-1) ... 3668s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 3668s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 3668s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 3668s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 3668s Setting up fontconfig (2.15.0-1ubuntu1) ... 3670s Regenerating fonts cache... done. 3670s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 3670s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 3670s Setting up libglx0:arm64 (1.7.0-1) ... 3670s Setting up libcommons-compress-java (1.25.0-1) ... 3670s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 3670s Setting up libcairo2:arm64 (1.18.0-1) ... 3670s Setting up libgl1:arm64 (1.7.0-1) ... 3670s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 3670s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 3670s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 3670s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 3670s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 3670s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 3670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 3670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 3670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 3670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 3670s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 3670s Setting up adwaita-icon-theme (46~rc-1) ... 3670s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 3670s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 3670s Setting up humanity-icon-theme (0.6.16) ... 3670s Setting up ubuntu-mono (24.04-0ubuntu1) ... 3671s Processing triggers for man-db (2.12.0-3) ... 3672s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3672s Processing triggers for ca-certificates-java (20240118) ... 3673s Adding debian:ACCVRAIZ1.pem 3673s Adding debian:AC_RAIZ_FNMT-RCM.pem 3673s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 3673s Adding debian:ANF_Secure_Server_Root_CA.pem 3673s Adding debian:Actalis_Authentication_Root_CA.pem 3673s Adding debian:AffirmTrust_Commercial.pem 3673s Adding debian:AffirmTrust_Networking.pem 3673s Adding debian:AffirmTrust_Premium.pem 3673s Adding debian:AffirmTrust_Premium_ECC.pem 3673s Adding debian:Amazon_Root_CA_1.pem 3673s Adding debian:Amazon_Root_CA_2.pem 3673s Adding debian:Amazon_Root_CA_3.pem 3673s Adding debian:Amazon_Root_CA_4.pem 3673s Adding debian:Atos_TrustedRoot_2011.pem 3673s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 3673s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 3673s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 3673s Adding debian:BJCA_Global_Root_CA1.pem 3673s Adding debian:BJCA_Global_Root_CA2.pem 3673s Adding debian:Baltimore_CyberTrust_Root.pem 3673s Adding debian:Buypass_Class_2_Root_CA.pem 3673s Adding debian:Buypass_Class_3_Root_CA.pem 3673s Adding debian:CA_Disig_Root_R2.pem 3673s Adding debian:CFCA_EV_ROOT.pem 3673s Adding debian:COMODO_Certification_Authority.pem 3673s Adding debian:COMODO_ECC_Certification_Authority.pem 3673s Adding debian:COMODO_RSA_Certification_Authority.pem 3673s Adding debian:Certainly_Root_E1.pem 3673s Adding debian:Certainly_Root_R1.pem 3673s Adding debian:Certigna.pem 3673s Adding debian:Certigna_Root_CA.pem 3673s Adding debian:Certum_EC-384_CA.pem 3673s Adding debian:Certum_Trusted_Network_CA.pem 3673s Adding debian:Certum_Trusted_Network_CA_2.pem 3673s Adding debian:Certum_Trusted_Root_CA.pem 3673s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 3673s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 3673s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 3673s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 3673s Adding debian:Comodo_AAA_Services_root.pem 3673s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 3673s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 3673s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 3673s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 3673s Adding debian:DigiCert_Assured_ID_Root_CA.pem 3673s Adding debian:DigiCert_Assured_ID_Root_G2.pem 3673s Adding debian:DigiCert_Assured_ID_Root_G3.pem 3673s Adding debian:DigiCert_Global_Root_CA.pem 3673s Adding debian:DigiCert_Global_Root_G2.pem 3673s Adding debian:DigiCert_Global_Root_G3.pem 3673s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 3673s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 3673s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 3673s Adding debian:DigiCert_Trusted_Root_G4.pem 3673s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 3673s Adding debian:Entrust_Root_Certification_Authority.pem 3673s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 3673s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 3673s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 3673s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 3674s Adding debian:GLOBALTRUST_2020.pem 3674s Adding debian:GTS_Root_R1.pem 3674s Adding debian:GTS_Root_R2.pem 3674s Adding debian:GTS_Root_R3.pem 3674s Adding debian:GTS_Root_R4.pem 3674s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 3674s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 3674s Adding debian:GlobalSign_Root_CA.pem 3674s Adding debian:GlobalSign_Root_CA_-_R3.pem 3674s Adding debian:GlobalSign_Root_CA_-_R6.pem 3674s Adding debian:GlobalSign_Root_E46.pem 3674s Adding debian:GlobalSign_Root_R46.pem 3674s Adding debian:Go_Daddy_Class_2_CA.pem 3674s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 3674s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 3674s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 3674s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 3674s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 3674s Adding debian:HiPKI_Root_CA_-_G1.pem 3674s Adding debian:Hongkong_Post_Root_CA_3.pem 3674s Adding debian:ISRG_Root_X1.pem 3674s Adding debian:ISRG_Root_X2.pem 3674s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 3674s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 3674s Adding debian:Izenpe.com.pem 3674s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 3674s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 3674s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 3674s Adding debian:NAVER_Global_Root_Certification_Authority.pem 3674s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 3674s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 3674s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 3674s Adding debian:QuoVadis_Root_CA_1_G3.pem 3674s Adding debian:QuoVadis_Root_CA_2.pem 3674s Adding debian:QuoVadis_Root_CA_2_G3.pem 3674s Adding debian:QuoVadis_Root_CA_3.pem 3674s Adding debian:QuoVadis_Root_CA_3_G3.pem 3674s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 3674s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 3674s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 3674s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 3674s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 3674s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 3674s Adding debian:SZAFIR_ROOT_CA2.pem 3674s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 3674s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 3674s Adding debian:SecureSign_RootCA11.pem 3674s Adding debian:SecureTrust_CA.pem 3674s Adding debian:Secure_Global_CA.pem 3674s Adding debian:Security_Communication_ECC_RootCA1.pem 3674s Adding debian:Security_Communication_RootCA2.pem 3674s Adding debian:Security_Communication_RootCA3.pem 3674s Adding debian:Security_Communication_Root_CA.pem 3674s Adding debian:Starfield_Class_2_CA.pem 3674s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 3674s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 3674s Adding debian:SwissSign_Gold_CA_-_G2.pem 3674s Adding debian:SwissSign_Silver_CA_-_G2.pem 3674s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 3674s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 3674s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 3674s Adding debian:TWCA_Global_Root_CA.pem 3674s Adding debian:TWCA_Root_Certification_Authority.pem 3674s Adding debian:TeliaSonera_Root_CA_v1.pem 3674s Adding debian:Telia_Root_CA_v2.pem 3674s Adding debian:TrustAsia_Global_Root_CA_G3.pem 3674s Adding debian:TrustAsia_Global_Root_CA_G4.pem 3674s Adding debian:Trustwave_Global_Certification_Authority.pem 3674s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 3674s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 3674s Adding debian:TunTrust_Root_CA.pem 3674s Adding debian:UCA_Extended_Validation_Root.pem 3674s Adding debian:UCA_Global_G2_Root.pem 3674s Adding debian:USERTrust_ECC_Certification_Authority.pem 3674s Adding debian:USERTrust_RSA_Certification_Authority.pem 3674s Adding debian:XRamp_Global_CA_Root.pem 3674s Adding debian:certSIGN_ROOT_CA.pem 3674s Adding debian:certSIGN_Root_CA_G2.pem 3674s Adding debian:e-Szigno_Root_CA_2017.pem 3674s Adding debian:ePKI_Root_Certification_Authority.pem 3674s Adding debian:emSign_ECC_Root_CA_-_C3.pem 3674s Adding debian:emSign_ECC_Root_CA_-_G3.pem 3674s Adding debian:emSign_Root_CA_-_C1.pem 3674s Adding debian:emSign_Root_CA_-_G1.pem 3674s Adding debian:vTrus_ECC_Root_CA.pem 3674s Adding debian:vTrus_Root_CA.pem 3674s done. 3674s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 3675s Setting up default-jre-headless (2:1.21-75+exp1) ... 3675s Setting up default-jre (2:1.21-75+exp1) ... 3675s Setting up pilon (1.24-3) ... 3675s Setting up autopkgtest-satdep (0) ... 3684s (Reading database ... 89545 files and directories currently installed.) 3684s Removing autopkgtest-satdep (0) ... 3690s autopkgtest [19:23:46]: test pilon-run-unit-test: [----------------------- 3691s Pilon version [COMMIT] [DATE] 3691s Genome: NC_045512.2.fasta 3691s Fixing snps, indels, gaps, local 3691s Input genome size: 29903 3691s Scanning BAMs 3692s SRR11728627.sorted.bam: 1250 reads, 0 filtered, 1009 mapped, 0 proper, 0 stray, Unpaired 100% 124+/-36, max 231 unpaired 3692s Processing NC_045512.2:1-29903 3692s unpaired SRR11728627.sorted.bam: coverage 4 3692s Total Reads: 1009, Coverage: 4, minDepth: 5 3693s Confirmed 4501 of 29903 bases (15.05%) 3693s Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 1 small deletions totaling 1 bases 3693s Large collapsed region: NC_045512.2:7701-17739 size 10039 3694s # Attempting to fix local continuity breaks 3694s # fix break: NC_045512.2:5582-8928 0 -0 +0 NoSolution 3694s # fix break: NC_045512.2:9224-10520 0 -0 +0 NoSolution 3695s # fix break: NC_045512.2:10739-28099 0 -0 +0 NoSolution 3695s NC_045512.2:1-29903 log: 3695s Finished processing NC_045512.2:1-29903 3695s Writing updated NC_045512.2_pilon to pilon.fasta 3695s Mean unpaired coverage: 4 3695s Mean total coverage: 4 3695s autopkgtest [19:23:51]: test pilon-run-unit-test: -----------------------] 3696s autopkgtest [19:23:52]: test pilon-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 3696s pilon-run-unit-test PASS 3696s autopkgtest [19:23:52]: @@@@@@@@@@@@@@@@@@@@ summary 3696s beagle-run-sample-analysis PASS 3696s chromhmm-run-sample-analysis PASS 3696s drop-seq-run-unit-test PASS 3696s fastqc-run-unit-test PASS 3696s jalview-run-unit-test PASS 3696s command1 PASS 3696s picard-tools-run-unit-test PASS 3696s pilon-run-unit-test PASS 3707s Creating nova instance adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 3707s Creating nova instance adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 3707s Creating nova instance adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 3707s Creating nova instance adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 3707s Creating nova instance adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 3707s Creating nova instance adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 3707s Creating nova instance adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 3707s Creating nova instance adt-noble-arm64-htsjdk-20240324-182216-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)...