0s autopkgtest [17:26:34]: starting date and time: 2024-03-24 17:26:34+0000 0s autopkgtest [17:26:34]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [17:26:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bgcbd_6o/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-7.secgroup --name adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 124s autopkgtest [17:28:38]: testbed dpkg architecture: arm64 124s autopkgtest [17:28:38]: testbed apt version: 2.7.12 124s autopkgtest [17:28:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 126s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 127s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 129s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 129s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 129s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 129s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 129s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 129s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 129s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 129s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 130s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 130s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 130s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 138s Fetched 9850 kB in 5s (1821 kB/s) 138s Reading package lists... 144s Reading package lists... 145s Building dependency tree... 145s Reading state information... 146s Calculating upgrade... 147s The following packages will be REMOVED: 147s libssl3 147s The following NEW packages will be installed: 147s libssl3t64 147s The following packages have been kept back: 147s curl 147s The following packages will be upgraded: 147s openssl 147s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 147s Need to get 2777 kB of archives. 147s After this operation, 139 kB of additional disk space will be used. 147s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 147s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 149s Fetched 2777 kB in 1s (3169 kB/s) 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 149s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 149s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 150s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 150s wget depends on libssl3 (>= 3.0.0). 150s u-boot-tools depends on libssl3 (>= 3.0.0). 150s tnftp depends on libssl3 (>= 3.0.0). 150s tcpdump depends on libssl3 (>= 3.0.0). 150s systemd-resolved depends on libssl3 (>= 3.0.0). 150s systemd depends on libssl3 (>= 3.0.0). 150s sudo depends on libssl3 (>= 3.0.0). 150s sbsigntool depends on libssl3 (>= 3.0.0). 150s rsync depends on libssl3 (>= 3.0.0). 150s python3-cryptography depends on libssl3 (>= 3.0.0). 150s openssh-server depends on libssl3 (>= 3.0.10). 150s openssh-client depends on libssl3 (>= 3.0.10). 150s mtd-utils depends on libssl3 (>= 3.0.0). 150s mokutil depends on libssl3 (>= 3.0.0). 150s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 150s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 150s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 150s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 150s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 150s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 150s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 150s libnvme1 depends on libssl3 (>= 3.0.0). 150s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 150s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 150s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 150s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 150s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 150s kmod depends on libssl3 (>= 3.0.0). 150s dhcpcd-base depends on libssl3 (>= 3.0.0). 150s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 150s 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 150s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 150s Selecting previously unselected package libssl3t64:arm64. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 150s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 150s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 150s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 150s Setting up openssl (3.0.13-0ubuntu2) ... 150s Processing triggers for man-db (2.12.0-3) ... 151s Processing triggers for libc-bin (2.39-0ubuntu6) ... 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 155s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 157s sh: Attempting to set up Debian/Ubuntu apt sources automatically 157s Reading package lists...sh: Distribution appears to be Ubuntu 159s 160s Building dependency tree... 160s Reading state information... 161s eatmydata is already the newest version (131-1). 161s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 161s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s dbus is already the newest version (1.14.10-4ubuntu1). 163s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 166s rng-tools-debian is already the newest version (2.4). 166s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 168s The following packages will be REMOVED: 168s cloud-init* python3-configobj* python3-debconf* 169s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 169s After this operation, 3256 kB disk space will be freed. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 169s Removing cloud-init (24.1.2-0ubuntu1) ... 171s Removing python3-configobj (5.0.8-3) ... 171s Removing python3-debconf (1.5.86) ... 171s Processing triggers for man-db (2.12.0-3) ... 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 172s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 175s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 175s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 175s invoke-rc.d: policy-rc.d denied execution of try-restart. 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 178s linux-generic is already the newest version (6.8.0-11.11+1). 178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 179s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 179s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 188s Reading package lists... 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 190s Calculating upgrade... 191s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 193s autopkgtest [17:29:47]: rebooting testbed after setup commands that affected boot 351s autopkgtest [17:32:25]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 355s autopkgtest [17:32:29]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk 363s Get:1 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (dsc) [2649 B] 363s Get:2 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (tar) [46.9 MB] 363s Get:3 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (diff) [39.4 kB] 363s gpgv: Signature made Sun Feb 11 21:45:33 2024 UTC 363s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 363s gpgv: Can't check signature: No public key 363s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-1.dsc: no acceptable signature found 368s autopkgtest [17:32:42]: testing package htsjdk version 4.1.0+dfsg-1 370s autopkgtest [17:32:44]: build not needed 375s autopkgtest [17:32:49]: test beagle-run-sample-analysis: preparing testbed 382s Reading package lists... 383s Building dependency tree... 383s Reading state information... 384s Starting pkgProblemResolver with broken count: 0 384s Starting 2 pkgProblemResolver with broken count: 0 384s Done 385s The following additional packages will be installed: 385s adwaita-icon-theme at-spi2-common beagle beagle-doc ca-certificates-java 385s default-jre default-jre-headless fontconfig fontconfig-config 385s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 385s humanity-icon-theme java-common libapache-pom-java libasound2 385s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 385s libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java 385s libcommons-logging-java libcommons-parent-java libcups2 libdatrie1 385s libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 385s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 385s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 385s libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 libjpeg-turbo8 385s libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 libmbedtls14 385s libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni 385s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 385s libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java libsnappy-jni 385s libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1 385s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 385s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 385s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 385s libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre 385s openjdk-21-jre-headless ubuntu-mono x11-common 385s Suggested packages: 385s libasound2-plugins alsa-utils libasm-java libxz-java 385s libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java 385s cups-common gvfs picard-tools liblcms2-utils libngs-java-doc pcscd rhino 385s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 385s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 385s Recommended packages: 385s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 385s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 385s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 385s The following NEW packages will be installed: 385s adwaita-icon-theme at-spi2-common autopkgtest-satdep beagle beagle-doc 385s ca-certificates-java default-jre default-jre-headless fontconfig 385s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 385s hicolor-icon-theme humanity-icon-theme java-common libapache-pom-java 385s libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 385s libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java 385s libcommons-logging-java libcommons-parent-java libcups2 libdatrie1 385s libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 385s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 385s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 385s libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 libjpeg-turbo8 385s libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 libmbedtls14 385s libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni 385s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 385s libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java libsnappy-jni 385s libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1 385s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 385s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 385s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 385s libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre 385s openjdk-21-jre-headless ubuntu-mono x11-common 385s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. 385s Need to get 98.1 MB/98.1 MB of archives. 385s After this operation, 447 MB of additional disk space will be used. 385s Get:1 /tmp/autopkgtest.w2H4x5/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 386s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 386s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 386s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 386s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 386s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 386s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 386s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 386s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 386s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 386s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 386s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 386s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 386s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 386s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 386s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 386s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 386s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 386s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 386s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 386s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 386s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 386s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 386s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 387s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 387s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 387s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 387s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 387s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 387s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 387s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 387s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 387s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 387s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 389s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 389s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 389s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 389s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 389s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 389s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 389s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 389s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 389s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 389s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 389s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 389s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 389s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 389s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 389s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 389s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 389s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 389s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 389s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 389s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 389s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 389s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 389s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 390s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 390s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 390s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 390s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 390s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 390s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 390s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 390s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 390s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 390s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 390s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 390s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 390s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 390s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 390s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 390s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 390s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 391s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 391s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 391s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 391s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 391s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 391s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 391s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 391s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 391s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 391s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 391s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 391s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 391s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 391s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 391s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 391s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 391s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 391s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 391s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 391s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 391s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 391s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 391s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 391s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 391s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 391s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 391s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 391s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 392s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 beagle all 220722-1 [356 kB] 392s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 beagle-doc all 220722-1 [1655 kB] 394s Fetched 98.1 MB in 7s (14.3 MB/s) 394s Selecting previously unselected package libgdk-pixbuf2.0-common. 394s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 394s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 394s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 394s Selecting previously unselected package libjpeg-turbo8:arm64. 394s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 394s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 394s Selecting previously unselected package libjpeg8:arm64. 394s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 394s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 394s Selecting previously unselected package libdeflate0:arm64. 394s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 394s Unpacking libdeflate0:arm64 (1.19-1) ... 394s Selecting previously unselected package libjbig0:arm64. 394s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 394s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 395s Selecting previously unselected package liblerc4:arm64. 395s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 395s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 395s Selecting previously unselected package libsharpyuv0:arm64. 395s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 395s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 395s Selecting previously unselected package libwebp7:arm64. 395s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 395s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 395s Selecting previously unselected package libtiff6:arm64. 395s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 395s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 395s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 395s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 395s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 395s Selecting previously unselected package gtk-update-icon-cache. 395s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 395s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 395s Selecting previously unselected package hicolor-icon-theme. 395s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 395s Unpacking hicolor-icon-theme (0.17-2) ... 395s Selecting previously unselected package humanity-icon-theme. 395s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 395s Unpacking humanity-icon-theme (0.6.16) ... 399s Selecting previously unselected package ubuntu-mono. 399s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 399s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 401s Selecting previously unselected package adwaita-icon-theme. 401s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 401s Unpacking adwaita-icon-theme (46~rc-1) ... 402s Selecting previously unselected package at-spi2-common. 402s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 402s Unpacking at-spi2-common (2.50.0-1) ... 402s Selecting previously unselected package ca-certificates-java. 402s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 402s Unpacking ca-certificates-java (20240118) ... 402s Selecting previously unselected package java-common. 402s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 402s Unpacking java-common (0.75+exp1) ... 402s Selecting previously unselected package libavahi-common-data:arm64. 402s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 402s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 402s Selecting previously unselected package libavahi-common3:arm64. 402s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 402s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 402s Selecting previously unselected package libavahi-client3:arm64. 402s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 402s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 402s Selecting previously unselected package libcups2:arm64. 402s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 402s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 403s Selecting previously unselected package liblcms2-2:arm64. 403s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 403s Unpacking liblcms2-2:arm64 (2.14-2) ... 403s Selecting previously unselected package fonts-dejavu-mono. 403s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 403s Unpacking fonts-dejavu-mono (2.37-8) ... 403s Selecting previously unselected package fonts-dejavu-core. 403s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 403s Unpacking fonts-dejavu-core (2.37-8) ... 403s Selecting previously unselected package fontconfig-config. 403s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 404s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 404s Selecting previously unselected package libfontconfig1:arm64. 404s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 404s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 404s Selecting previously unselected package libasound2-data. 404s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 404s Unpacking libasound2-data (1.2.10-3build1) ... 404s Selecting previously unselected package libasound2:arm64. 404s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 404s Unpacking libasound2:arm64 (1.2.10-3build1) ... 404s Selecting previously unselected package libgraphite2-3:arm64. 404s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 404s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 404s Selecting previously unselected package libharfbuzz0b:arm64. 404s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 404s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 404s Selecting previously unselected package libpcsclite1:arm64. 404s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 404s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 404s Selecting previously unselected package openjdk-21-jre-headless:arm64. 404s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 404s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 409s Selecting previously unselected package default-jre-headless. 409s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 409s Unpacking default-jre-headless (2:1.21-75+exp1) ... 409s Selecting previously unselected package libgtk2.0-common. 409s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 409s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 409s Selecting previously unselected package libatk1.0-0:arm64. 409s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 409s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 409s Selecting previously unselected package libpixman-1-0:arm64. 409s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 409s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 409s Selecting previously unselected package libxcb-render0:arm64. 409s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 409s Unpacking libxcb-render0:arm64 (1.15-1) ... 409s Selecting previously unselected package libxcb-shm0:arm64. 409s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 409s Unpacking libxcb-shm0:arm64 (1.15-1) ... 409s Selecting previously unselected package libxrender1:arm64. 409s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 409s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 410s Selecting previously unselected package libcairo2:arm64. 410s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 410s Unpacking libcairo2:arm64 (1.18.0-1) ... 410s Selecting previously unselected package fontconfig. 410s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 410s Unpacking fontconfig (2.15.0-1ubuntu1) ... 410s Selecting previously unselected package libthai-data. 410s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 410s Unpacking libthai-data (0.1.29-2) ... 410s Selecting previously unselected package libdatrie1:arm64. 410s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 410s Unpacking libdatrie1:arm64 (0.2.13-3) ... 410s Selecting previously unselected package libthai0:arm64. 410s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 410s Unpacking libthai0:arm64 (0.1.29-2) ... 410s Selecting previously unselected package libpango-1.0-0:arm64. 410s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 410s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 410s Selecting previously unselected package libpangoft2-1.0-0:arm64. 410s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 410s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 410s Selecting previously unselected package libpangocairo-1.0-0:arm64. 410s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 410s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 410s Selecting previously unselected package libxcomposite1:arm64. 410s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 410s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 411s Selecting previously unselected package libxfixes3:arm64. 411s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 411s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 411s Selecting previously unselected package libxcursor1:arm64. 411s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 411s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 411s Selecting previously unselected package libxdamage1:arm64. 411s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 411s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 411s Selecting previously unselected package libxi6:arm64. 411s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 411s Unpacking libxi6:arm64 (2:1.8.1-1) ... 411s Selecting previously unselected package libxinerama1:arm64. 411s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 411s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 411s Selecting previously unselected package libxrandr2:arm64. 411s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 411s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 411s Selecting previously unselected package libgtk2.0-0:arm64. 411s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 411s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 411s Selecting previously unselected package libglvnd0:arm64. 411s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 411s Unpacking libglvnd0:arm64 (1.7.0-1) ... 412s Selecting previously unselected package libglapi-mesa:arm64. 412s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 412s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 412s Selecting previously unselected package libx11-xcb1:arm64. 412s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 412s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 412s Selecting previously unselected package libxcb-dri2-0:arm64. 412s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 412s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 412s Selecting previously unselected package libxcb-dri3-0:arm64. 412s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 412s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 412s Selecting previously unselected package libxcb-glx0:arm64. 412s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 412s Unpacking libxcb-glx0:arm64 (1.15-1) ... 412s Selecting previously unselected package libxcb-present0:arm64. 412s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 412s Unpacking libxcb-present0:arm64 (1.15-1) ... 412s Selecting previously unselected package libxcb-randr0:arm64. 412s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 412s Unpacking libxcb-randr0:arm64 (1.15-1) ... 412s Selecting previously unselected package libxcb-sync1:arm64. 412s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 412s Unpacking libxcb-sync1:arm64 (1.15-1) ... 412s Selecting previously unselected package libxcb-xfixes0:arm64. 412s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 412s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 412s Selecting previously unselected package libxshmfence1:arm64. 412s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 412s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 412s Selecting previously unselected package libxxf86vm1:arm64. 413s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 413s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 413s Selecting previously unselected package libvulkan1:arm64. 413s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 413s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 413s Selecting previously unselected package libdrm-amdgpu1:arm64. 413s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 413s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 413s Selecting previously unselected package libdrm-nouveau2:arm64. 413s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 413s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 413s Selecting previously unselected package libdrm-radeon1:arm64. 413s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 413s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 413s Selecting previously unselected package libllvm17:arm64. 413s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 413s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 415s Selecting previously unselected package libgl1-mesa-dri:arm64. 415s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 415s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 416s Selecting previously unselected package libglx-mesa0:arm64. 416s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 416s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 416s Selecting previously unselected package libglx0:arm64. 416s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 416s Unpacking libglx0:arm64 (1.7.0-1) ... 416s Selecting previously unselected package libgl1:arm64. 416s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 416s Unpacking libgl1:arm64 (1.7.0-1) ... 416s Selecting previously unselected package libgif7:arm64. 416s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 416s Unpacking libgif7:arm64 (5.2.1-2.5) ... 417s Selecting previously unselected package x11-common. 417s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 417s Unpacking x11-common (1:7.7+23ubuntu2) ... 417s Selecting previously unselected package libxtst6:arm64. 417s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 417s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 417s Selecting previously unselected package openjdk-21-jre:arm64. 417s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 417s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 417s Selecting previously unselected package default-jre. 417s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 417s Unpacking default-jre (2:1.21-75+exp1) ... 417s Selecting previously unselected package libapache-pom-java. 417s Preparing to unpack .../082-libapache-pom-java_29-2_all.deb ... 417s Unpacking libapache-pom-java (29-2) ... 417s Selecting previously unselected package libcommons-parent-java. 417s Preparing to unpack .../083-libcommons-parent-java_56-1_all.deb ... 417s Unpacking libcommons-parent-java (56-1) ... 417s Selecting previously unselected package libcommons-compress-java. 417s Preparing to unpack .../084-libcommons-compress-java_1.25.0-1_all.deb ... 417s Unpacking libcommons-compress-java (1.25.0-1) ... 417s Selecting previously unselected package libcommons-logging-java. 417s Preparing to unpack .../085-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 417s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 417s Selecting previously unselected package libcommons-jexl2-java. 417s Preparing to unpack .../086-libcommons-jexl2-java_2.1.1-6_all.deb ... 417s Unpacking libcommons-jexl2-java (2.1.1-6) ... 418s Selecting previously unselected package libmjson-java. 418s Preparing to unpack .../087-libmjson-java_1.4.0-3_all.deb ... 418s Unpacking libmjson-java (1.4.0-3) ... 418s Selecting previously unselected package libmbedcrypto7:arm64. 418s Preparing to unpack .../088-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 418s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 418s Selecting previously unselected package libmbedx509-1:arm64. 418s Preparing to unpack .../089-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 418s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 418s Selecting previously unselected package libmbedtls14:arm64. 418s Preparing to unpack .../090-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 418s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 418s Selecting previously unselected package ncbi-vdb-data. 418s Preparing to unpack .../091-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 418s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 418s Selecting previously unselected package libncbi-vdb3:arm64. 418s Preparing to unpack .../092-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 418s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 418s Selecting previously unselected package libncbi-ngs3:arm64. 418s Preparing to unpack .../093-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 418s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 418s Selecting previously unselected package libngs-jni:arm64. 418s Preparing to unpack .../094-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 418s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 418s Selecting previously unselected package libngs-java:arm64. 418s Preparing to unpack .../095-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 418s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 418s Selecting previously unselected package librhino-java. 419s Preparing to unpack .../096-librhino-java_1.7.14-2.1_all.deb ... 419s Unpacking librhino-java (1.7.14-2.1) ... 419s Selecting previously unselected package libsnappy1v5:arm64. 419s Preparing to unpack .../097-libsnappy1v5_1.1.10-1_arm64.deb ... 419s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 419s Selecting previously unselected package libsnappy-jni. 419s Preparing to unpack .../098-libsnappy-jni_1.1.10.5-1_arm64.deb ... 419s Unpacking libsnappy-jni (1.1.10.5-1) ... 419s Selecting previously unselected package libsnappy-java. 419s Preparing to unpack .../099-libsnappy-java_1.1.10.5-1_all.deb ... 419s Unpacking libsnappy-java (1.1.10.5-1) ... 419s Selecting previously unselected package libhtsjdk-java. 419s Preparing to unpack .../100-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 419s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 419s Selecting previously unselected package beagle. 419s Preparing to unpack .../101-beagle_220722-1_all.deb ... 419s Unpacking beagle (220722-1) ... 419s Selecting previously unselected package beagle-doc. 419s Preparing to unpack .../102-beagle-doc_220722-1_all.deb ... 419s Unpacking beagle-doc (220722-1) ... 420s Selecting previously unselected package autopkgtest-satdep. 420s Preparing to unpack .../103-1-autopkgtest-satdep.deb ... 420s Unpacking autopkgtest-satdep (0) ... 420s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 420s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 420s Setting up liblcms2-2:arm64 (2.14-2) ... 420s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 420s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 420s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 420s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 420s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 420s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 420s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 420s Setting up hicolor-icon-theme (0.17-2) ... 420s Setting up libxi6:arm64 (2:1.8.1-1) ... 420s Setting up java-common (0.75+exp1) ... 420s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 420s Setting up libdatrie1:arm64 (0.2.13-3) ... 420s Setting up beagle-doc (220722-1) ... 420s Setting up libxcb-render0:arm64 (1.15-1) ... 420s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 420s Setting up libglvnd0:arm64 (1.7.0-1) ... 420s Setting up libmjson-java (1.4.0-3) ... 420s Setting up libxcb-glx0:arm64 (1.15-1) ... 420s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 420s Setting up x11-common (1:7.7+23ubuntu2) ... 422s Setting up libdeflate0:arm64 (1.19-1) ... 422s Setting up libxcb-shm0:arm64 (1.15-1) ... 422s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 422s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 422s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 422s Setting up libxcb-present0:arm64 (1.15-1) ... 422s Setting up libasound2-data (1.2.10-3build1) ... 422s Setting up librhino-java (1.7.14-2.1) ... 422s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 422s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 422s Setting up libxcb-sync1:arm64 (1.15-1) ... 422s Setting up libapache-pom-java (29-2) ... 422s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 422s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 422s Setting up fonts-dejavu-mono (2.37-8) ... 422s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 422s Setting up fonts-dejavu-core (2.37-8) ... 422s Setting up libpcsclite1:arm64 (2.0.0-1) ... 422s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 422s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 422s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 422s Setting up libwebp7:arm64 (1.3.2-0.4) ... 422s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 422s Setting up libgif7:arm64 (5.2.1-2.5) ... 422s Setting up libxshmfence1:arm64 (1.3-1build4) ... 422s Setting up at-spi2-common (2.50.0-1) ... 422s Setting up libxcb-randr0:arm64 (1.15-1) ... 422s Setting up libasound2:arm64 (1.2.10-3build1) ... 422s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 422s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 422s Setting up libthai-data (0.1.29-2) ... 422s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 422s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 422s Setting up ca-certificates-java (20240118) ... 422s No JRE found. Skipping Java certificates setup. 422s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 422s Setting up libsnappy-jni (1.1.10.5-1) ... 422s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 422s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 422s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 422s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 422s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 422s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 423s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 423s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 423s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 423s Setting up libcommons-parent-java (56-1) ... 423s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 423s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 423s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 423s Setting up libcommons-jexl2-java (2.1.1-6) ... 423s Setting up libthai0:arm64 (0.1.29-2) ... 423s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 423s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 423s Setting up libsnappy-java (1.1.10.5-1) ... 423s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 423s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 423s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 423s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 423s Setting up fontconfig (2.15.0-1ubuntu1) ... 425s Regenerating fonts cache... done. 425s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 425s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 425s Setting up libglx0:arm64 (1.7.0-1) ... 425s Setting up libcommons-compress-java (1.25.0-1) ... 425s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 425s Setting up libcairo2:arm64 (1.18.0-1) ... 425s Setting up libgl1:arm64 (1.7.0-1) ... 425s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 425s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 425s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 425s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 425s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 425s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 425s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 425s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 425s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 425s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 425s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 425s Setting up adwaita-icon-theme (46~rc-1) ... 425s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 425s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 425s Setting up humanity-icon-theme (0.6.16) ... 426s Setting up ubuntu-mono (24.04-0ubuntu1) ... 426s Processing triggers for man-db (2.12.0-3) ... 427s Processing triggers for libc-bin (2.39-0ubuntu6) ... 428s Processing triggers for ca-certificates-java (20240118) ... 429s Adding debian:ACCVRAIZ1.pem 429s Adding debian:AC_RAIZ_FNMT-RCM.pem 429s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 429s Adding debian:ANF_Secure_Server_Root_CA.pem 429s Adding debian:Actalis_Authentication_Root_CA.pem 429s Adding debian:AffirmTrust_Commercial.pem 429s Adding debian:AffirmTrust_Networking.pem 429s Adding debian:AffirmTrust_Premium.pem 429s Adding debian:AffirmTrust_Premium_ECC.pem 429s Adding debian:Amazon_Root_CA_1.pem 429s Adding debian:Amazon_Root_CA_2.pem 429s Adding debian:Amazon_Root_CA_3.pem 429s Adding debian:Amazon_Root_CA_4.pem 429s Adding debian:Atos_TrustedRoot_2011.pem 429s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 429s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 429s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 429s Adding debian:BJCA_Global_Root_CA1.pem 429s Adding debian:BJCA_Global_Root_CA2.pem 429s Adding debian:Baltimore_CyberTrust_Root.pem 429s Adding debian:Buypass_Class_2_Root_CA.pem 429s Adding debian:Buypass_Class_3_Root_CA.pem 429s Adding debian:CA_Disig_Root_R2.pem 429s Adding debian:CFCA_EV_ROOT.pem 429s Adding debian:COMODO_Certification_Authority.pem 429s Adding debian:COMODO_ECC_Certification_Authority.pem 429s Adding debian:COMODO_RSA_Certification_Authority.pem 429s Adding debian:Certainly_Root_E1.pem 429s Adding debian:Certainly_Root_R1.pem 429s Adding debian:Certigna.pem 429s Adding debian:Certigna_Root_CA.pem 429s Adding debian:Certum_EC-384_CA.pem 429s Adding debian:Certum_Trusted_Network_CA.pem 429s Adding debian:Certum_Trusted_Network_CA_2.pem 429s Adding debian:Certum_Trusted_Root_CA.pem 429s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 429s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 429s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 429s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 429s Adding debian:Comodo_AAA_Services_root.pem 429s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 429s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 430s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 430s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 430s Adding debian:DigiCert_Assured_ID_Root_CA.pem 430s Adding debian:DigiCert_Assured_ID_Root_G2.pem 430s Adding debian:DigiCert_Assured_ID_Root_G3.pem 430s Adding debian:DigiCert_Global_Root_CA.pem 430s Adding debian:DigiCert_Global_Root_G2.pem 430s Adding debian:DigiCert_Global_Root_G3.pem 430s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 430s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 430s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 430s Adding debian:DigiCert_Trusted_Root_G4.pem 430s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 430s Adding debian:Entrust_Root_Certification_Authority.pem 430s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 430s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 430s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 430s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 430s Adding debian:GLOBALTRUST_2020.pem 430s Adding debian:GTS_Root_R1.pem 430s Adding debian:GTS_Root_R2.pem 430s Adding debian:GTS_Root_R3.pem 430s Adding debian:GTS_Root_R4.pem 430s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 430s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 430s Adding debian:GlobalSign_Root_CA.pem 430s Adding debian:GlobalSign_Root_CA_-_R3.pem 430s Adding debian:GlobalSign_Root_CA_-_R6.pem 430s Adding debian:GlobalSign_Root_E46.pem 430s Adding debian:GlobalSign_Root_R46.pem 430s Adding debian:Go_Daddy_Class_2_CA.pem 430s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 430s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 430s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 430s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 430s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 430s Adding debian:HiPKI_Root_CA_-_G1.pem 430s Adding debian:Hongkong_Post_Root_CA_3.pem 430s Adding debian:ISRG_Root_X1.pem 430s Adding debian:ISRG_Root_X2.pem 430s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 430s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 430s Adding debian:Izenpe.com.pem 430s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 430s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 430s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 430s Adding debian:NAVER_Global_Root_Certification_Authority.pem 430s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 430s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 430s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 430s Adding debian:QuoVadis_Root_CA_1_G3.pem 430s Adding debian:QuoVadis_Root_CA_2.pem 430s Adding debian:QuoVadis_Root_CA_2_G3.pem 430s Adding debian:QuoVadis_Root_CA_3.pem 430s Adding debian:QuoVadis_Root_CA_3_G3.pem 430s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 430s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 430s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 430s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 430s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 430s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 430s Adding debian:SZAFIR_ROOT_CA2.pem 430s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 430s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 430s Adding debian:SecureSign_RootCA11.pem 430s Adding debian:SecureTrust_CA.pem 430s Adding debian:Secure_Global_CA.pem 430s Adding debian:Security_Communication_ECC_RootCA1.pem 430s Adding debian:Security_Communication_RootCA2.pem 430s Adding debian:Security_Communication_RootCA3.pem 430s Adding debian:Security_Communication_Root_CA.pem 430s Adding debian:Starfield_Class_2_CA.pem 430s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 430s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 430s Adding debian:SwissSign_Gold_CA_-_G2.pem 430s Adding debian:SwissSign_Silver_CA_-_G2.pem 431s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 431s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 431s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 431s Adding debian:TWCA_Global_Root_CA.pem 431s Adding debian:TWCA_Root_Certification_Authority.pem 431s Adding debian:TeliaSonera_Root_CA_v1.pem 431s Adding debian:Telia_Root_CA_v2.pem 431s Adding debian:TrustAsia_Global_Root_CA_G3.pem 431s Adding debian:TrustAsia_Global_Root_CA_G4.pem 431s Adding debian:Trustwave_Global_Certification_Authority.pem 431s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 431s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 431s Adding debian:TunTrust_Root_CA.pem 431s Adding debian:UCA_Extended_Validation_Root.pem 431s Adding debian:UCA_Global_G2_Root.pem 431s Adding debian:USERTrust_ECC_Certification_Authority.pem 431s Adding debian:USERTrust_RSA_Certification_Authority.pem 431s Adding debian:XRamp_Global_CA_Root.pem 431s Adding debian:certSIGN_ROOT_CA.pem 431s Adding debian:certSIGN_Root_CA_G2.pem 431s Adding debian:e-Szigno_Root_CA_2017.pem 431s Adding debian:ePKI_Root_Certification_Authority.pem 431s Adding debian:emSign_ECC_Root_CA_-_C3.pem 431s Adding debian:emSign_ECC_Root_CA_-_G3.pem 431s Adding debian:emSign_Root_CA_-_C1.pem 431s Adding debian:emSign_Root_CA_-_G1.pem 431s Adding debian:vTrus_ECC_Root_CA.pem 431s Adding debian:vTrus_Root_CA.pem 431s done. 431s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 431s Setting up default-jre-headless (2:1.21-75+exp1) ... 431s Setting up default-jre (2:1.21-75+exp1) ... 431s Setting up beagle (220722-1) ... 431s Setting up autopkgtest-satdep (0) ... 443s (Reading database ... 89680 files and directories currently installed.) 443s Removing autopkgtest-satdep (0) ... 443s autopkgtest [17:33:57]: test beagle-run-sample-analysis: [----------------------- 447s beagle.22Jul22.46e.jar (version 5.4) 447s Copyright (C) 2014-2022 Brian L. Browning 447s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument 448s Start time: 05:34 PM UTC on 24 Mar 2024 448s 448s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar 448s gt=test.vcf.gz 448s out=out.gt 448s nthreads=1 448s 448s No genetic map is specified: using 1 cM = 1 Mb 450s 450s Reference samples: 0 450s Study samples: 191 450s 450s Window 1 [22:20000086-20099941] 450s Study markers: 1,356 454s 454s Burnin iteration 1: 4 seconds 456s Burnin iteration 2: 2 seconds 457s 457s Estimated ne: 136281 457s Estimated err: 1.4e-03 457s 457s Phasing iteration 1: 1 second 457s Phasing iteration 2: 1 second 458s Phasing iteration 3: 0 seconds 458s Phasing iteration 4: 0 seconds 459s Phasing iteration 5: 0 seconds 459s Phasing iteration 6: 0 seconds 459s Phasing iteration 7: 0 seconds 459s Phasing iteration 8: 0 seconds 460s Phasing iteration 9: 0 seconds 460s Phasing iteration 10: 0 seconds 460s Phasing iteration 11: 0 seconds 460s Phasing iteration 12: 0 seconds 462s Low frequency phasing: 1 second 462s 462s Cumulative Statistics: 462s 462s Study markers: 1,356 462s 462s Haplotype phasing time: 11 seconds 462s Total time: 14 seconds 462s 462s End time: 05:34 PM UTC on 24 Mar 2024 462s beagle.22Jul22.46e.jar finished 462s beagle.22Jul22.46e.jar (version 5.4) 462s Copyright (C) 2014-2022 Brian L. Browning 462s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument 463s Start time: 05:34 PM UTC on 24 Mar 2024 463s 463s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar 463s ref=ref.vcf.gz 463s gt=target.vcf.gz 463s out=out.ref 463s nthreads=1 463s 463s No genetic map is specified: using 1 cM = 1 Mb 465s 465s Reference samples: 181 465s Study samples: 10 465s 465s Window 1 [22:20000086-20099941] 465s Reference markers: 1,356 465s Study markers: 1,356 468s 468s Burnin iteration 1: 1 second 468s Burnin iteration 2: 0 seconds 468s 468s Estimated ne: 217008 468s Estimated err: 1.4e-03 468s 468s Phasing iteration 1: 0 seconds 468s Phasing iteration 2: 0 seconds 468s Phasing iteration 3: 0 seconds 468s Phasing iteration 4: 0 seconds 468s Phasing iteration 5: 0 seconds 468s Phasing iteration 6: 0 seconds 468s Phasing iteration 7: 0 seconds 468s Phasing iteration 8: 0 seconds 468s Phasing iteration 9: 0 seconds 468s Phasing iteration 10: 0 seconds 468s Phasing iteration 11: 0 seconds 468s Phasing iteration 12: 0 seconds 468s Low frequency phasing: 1 second 469s 469s Cumulative Statistics: 469s 469s Study markers: 1,356 469s 469s Haplotype phasing time: 3 seconds 469s Total time: 6 seconds 469s 469s End time: 05:34 PM UTC on 24 Mar 2024 469s beagle.22Jul22.46e.jar finished 469s beagle.22Jul22.46e.jar (version 5.4) 469s Copyright (C) 2014-2022 Brian L. Browning 469s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument 469s Start time: 05:34 PM UTC on 24 Mar 2024 469s 469s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar 469s ref=ref.bref3 469s gt=target.vcf.gz 469s out=out.bref3 469s nthreads=1 470s 470s No genetic map is specified: using 1 cM = 1 Mb 470s 470s Reference samples: 181 470s Study samples: 10 470s 470s Window 1 [22:20000086-20099941] 470s Reference markers: 1,356 470s Study markers: 1,356 472s 472s Burnin iteration 1: 1 second 473s Burnin iteration 2: 0 seconds 473s 473s Estimated ne: 217008 473s Estimated err: 1.4e-03 473s 473s Phasing iteration 1: 0 seconds 473s Phasing iteration 2: 0 seconds 473s Phasing iteration 3: 0 seconds 473s Phasing iteration 4: 0 seconds 473s Phasing iteration 5: 0 seconds 473s Phasing iteration 6: 0 seconds 474s Phasing iteration 7: 0 seconds 474s Phasing iteration 8: 0 seconds 474s Phasing iteration 9: 0 seconds 474s Phasing iteration 10: 0 seconds 474s Phasing iteration 11: 0 seconds 474s Phasing iteration 12: 0 seconds 475s Low frequency phasing: 1 second 475s 475s Cumulative Statistics: 475s 475s Study markers: 1,356 475s 475s Haplotype phasing time: 3 seconds 475s Total time: 6 seconds 475s 475s End time: 05:34 PM UTC on 24 Mar 2024 475s beagle.22Jul22.46e.jar finished 475s autopkgtest [17:34:29]: test beagle-run-sample-analysis: -----------------------] 476s beagle-run-sample-analysis PASS 476s autopkgtest [17:34:30]: test beagle-run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 476s autopkgtest [17:34:30]: test chromhmm-run-sample-analysis: preparing testbed 805s autopkgtest [17:39:48]: testbed dpkg architecture: arm64 805s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 805s autopkgtest [17:39:49]: testbed apt version: 2.7.12 805s autopkgtest [17:39:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 805s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 805s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 805s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 805s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 805s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [710 kB] 805s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 805s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 805s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 805s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 806s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 806s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 806s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 839s Fetched 9851 kB in 16s (607 kB/s) 842s Reading package lists... 863s Reading package lists... 866s Building dependency tree... 866s Reading state information... 869s Calculating upgrade... 872s The following packages will be REMOVED: 872s libssl3 872s The following NEW packages will be installed: 872s libssl3t64 872s The following packages have been kept back: 872s curl 872s The following packages will be upgraded: 872s openssl 873s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 873s Need to get 2777 kB of archives. 873s After this operation, 139 kB of additional disk space will be used. 873s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 874s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 884s Fetched 2777 kB in 4s (757 kB/s) 884s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 884s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 884s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 885s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 885s wget depends on libssl3 (>= 3.0.0). 885s u-boot-tools depends on libssl3 (>= 3.0.0). 885s tnftp depends on libssl3 (>= 3.0.0). 885s tcpdump depends on libssl3 (>= 3.0.0). 885s systemd-resolved depends on libssl3 (>= 3.0.0). 885s systemd depends on libssl3 (>= 3.0.0). 885s sudo depends on libssl3 (>= 3.0.0). 885s sbsigntool depends on libssl3 (>= 3.0.0). 885s rsync depends on libssl3 (>= 3.0.0). 885s python3-cryptography depends on libssl3 (>= 3.0.0). 885s openssh-server depends on libssl3 (>= 3.0.10). 885s openssh-client depends on libssl3 (>= 3.0.10). 885s mtd-utils depends on libssl3 (>= 3.0.0). 885s mokutil depends on libssl3 (>= 3.0.0). 885s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 885s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 885s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 885s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 885s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 885s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 885s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 885s libnvme1 depends on libssl3 (>= 3.0.0). 885s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 885s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 885s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 885s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 885s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 885s kmod depends on libssl3 (>= 3.0.0). 885s dhcpcd-base depends on libssl3 (>= 3.0.0). 885s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 885s 885s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 885s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 886s Selecting previously unselected package libssl3t64:arm64. 886s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 888s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 888s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 888s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 888s Setting up openssl (3.0.13-0ubuntu2) ... 888s Processing triggers for man-db (2.12.0-3) ... 897s Processing triggers for libc-bin (2.39-0ubuntu6) ... 906s Reading package lists... 908s Building dependency tree... 908s Reading state information... 913s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 917s sh: Attempting to set up Debian/Ubuntu apt sources automatically 917s sh: Distribution appears to be Ubuntu 929s Reading package lists... 931s Building dependency tree... 931s Reading state information... 939s eatmydata is already the newest version (131-1). 939s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 939s Reading package lists... 939s Building dependency tree... 939s Reading state information... 939s dbus is already the newest version (1.14.10-4ubuntu1). 939s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 939s Reading package lists... 940s Building dependency tree... 940s Reading state information... 948s rng-tools-debian is already the newest version (2.4). 948s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 948s Reading package lists... 948s Building dependency tree... 948s Reading state information... 948s The following packages will be REMOVED: 948s cloud-init* python3-configobj* python3-debconf* 948s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 948s After this operation, 3256 kB disk space will be freed. 948s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 948s Removing cloud-init (24.1.2-0ubuntu1) ... 959s Removing python3-configobj (5.0.8-3) ... 961s Removing python3-debconf (1.5.86) ... 961s Processing triggers for man-db (2.12.0-3) ... 963s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 963s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 970s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 971s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 971s invoke-rc.d: policy-rc.d denied execution of try-restart. 972s Reading package lists... 973s Building dependency tree... 973s Reading state information... 976s linux-generic is already the newest version (6.8.0-11.11+1). 976s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 980s Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 980s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 980s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 994s Fetched 255 kB in 2s (115 kB/s) 1003s Reading package lists... 1003s Reading package lists... 1003s Building dependency tree... 1003s Reading state information... 1003s Calculating upgrade... 1004s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1004s Reading package lists... 1005s Building dependency tree... 1005s Reading state information... 1007s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1008s autopkgtest [17:43:22]: rebooting testbed after setup commands that affected boot 1194s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1230s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1288s Reading package lists... 1291s Building dependency tree... 1291s Reading state information... 1295s Starting pkgProblemResolver with broken count: 0 1298s Starting 2 pkgProblemResolver with broken count: 0 1298s Done 1301s The following additional packages will be installed: 1301s adwaita-icon-theme at-spi2-common ca-certificates-java chromhmm 1301s chromhmm-example default-jre default-jre-headless fontconfig 1301s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 1301s hicolor-icon-theme humanity-icon-theme java-common java-wrappers 1301s libapache-pom-java libasound2 libasound2-data libatk1.0-0 libavahi-client3 1301s libavahi-common-data libavahi-common3 libbatik-java libcairo2 1301s libcommons-compress-java libcommons-io-java libcommons-jexl2-java 1301s libcommons-logging-java libcommons-parent-java libcups2 libdatrie1 1301s libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 1301s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 1301s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 1301s libgtk2.0-common libharfbuzz0b libhtsjdk-java libjaxp1.3-java libjbig0 1301s libjheatchart-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17 1301s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 1301s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 1301s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 librhino-java libsharpyuv0 1301s libsnappy-java libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 1301s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 1301s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 1301s libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 1301s libxinerama1 libxml-commons-external-java libxmlgraphics-commons-java 1301s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 1301s openjdk-21-jre openjdk-21-jre-headless ubuntu-mono unzip x11-common 1301s Suggested packages: 1301s libasound2-plugins alsa-utils libasm-java libxz-java libcommons-io-java-doc 1301s libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java 1301s cups-common gvfs picard-tools liblcms2-utils libngs-java-doc pcscd rhino 1301s libxmlgraphics-commons-java-doc libnss-mdns fonts-dejavu-extra 1301s fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei 1301s | fonts-wqy-zenhei fonts-indic zip 1301s Recommended packages: 1301s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 1301s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 1301s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 1304s The following NEW packages will be installed: 1304s adwaita-icon-theme at-spi2-common autopkgtest-satdep ca-certificates-java 1304s chromhmm chromhmm-example default-jre default-jre-headless fontconfig 1304s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 1304s hicolor-icon-theme humanity-icon-theme java-common java-wrappers 1304s libapache-pom-java libasound2 libasound2-data libatk1.0-0 libavahi-client3 1304s libavahi-common-data libavahi-common3 libbatik-java libcairo2 1304s libcommons-compress-java libcommons-io-java libcommons-jexl2-java 1304s libcommons-logging-java libcommons-parent-java libcups2 libdatrie1 1304s libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 1304s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri 1304s libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 1304s libgtk2.0-common libharfbuzz0b libhtsjdk-java libjaxp1.3-java libjbig0 1304s libjheatchart-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17 1304s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 1304s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 1304s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 librhino-java libsharpyuv0 1304s libsnappy-java libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 1304s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 1304s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 1304s libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 1304s libxinerama1 libxml-commons-external-java libxmlgraphics-commons-java 1304s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 1304s openjdk-21-jre openjdk-21-jre-headless ubuntu-mono unzip x11-common 1304s 0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded. 1304s Need to get 147 MB/147 MB of archives. 1304s After this operation, 491 MB of additional disk space will be used. 1304s Get:1 /tmp/autopkgtest.w2H4x5/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 1305s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 1305s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 1305s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 1305s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 1305s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 1305s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 1305s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 1305s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 1305s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 1305s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 1305s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 1305s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 1305s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 1306s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 1306s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 1306s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 1306s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 1306s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 1306s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 1306s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 1306s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 1306s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 1306s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 1306s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 1306s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 1306s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 1306s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 1306s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 1306s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 1306s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 1306s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 1307s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 1307s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 1315s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 1315s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 1315s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 1315s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 1315s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 1315s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 1315s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 1315s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 1316s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 1316s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 1316s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 1316s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 1316s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 1316s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 1316s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 1316s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 1316s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 1316s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 1316s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 1316s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 1316s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 1316s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 1316s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 1317s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 1317s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 1317s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 1317s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 1317s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 1317s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 1317s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 1317s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 1317s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 1317s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 1317s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 1317s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 1317s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 1317s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 1317s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 1317s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 1317s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 1320s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 1321s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 1321s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 1321s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 1321s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 1321s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1321s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 1321s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 1321s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 1321s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 1321s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 java-wrappers all 0.4 [8662 B] 1321s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxp1.3-java all 1.3.05-6 [227 kB] 1321s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 1321s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 1321s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 1321s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 1321s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 1321s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libxmlgraphics-commons-java all 2.8-2 [619 kB] 1321s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libbatik-java all 1.17+dfsg-1 [3877 kB] 1322s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 1322s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 1322s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 1322s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 1322s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 1322s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 1322s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 1322s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 1322s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 1322s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 1322s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 1322s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 1323s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 1323s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 1323s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 1323s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 1323s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjheatchart-java all 0.6-1.1 [8408 B] 1323s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 chromhmm all 1.25+dfsg-1 [191 kB] 1323s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 chromhmm-example all 1.25+dfsg-1 [45.0 MB] 1334s Fetched 147 MB in 25s (5926 kB/s) 1334s Selecting previously unselected package libgdk-pixbuf2.0-common. 1336s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 1336s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 1336s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 1337s Selecting previously unselected package libjpeg-turbo8:arm64. 1337s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 1337s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1337s Selecting previously unselected package libjpeg8:arm64. 1337s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 1337s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1337s Selecting previously unselected package libdeflate0:arm64. 1337s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 1337s Unpacking libdeflate0:arm64 (1.19-1) ... 1338s Selecting previously unselected package libjbig0:arm64. 1338s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 1338s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 1338s Selecting previously unselected package liblerc4:arm64. 1338s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 1338s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1338s Selecting previously unselected package libsharpyuv0:arm64. 1338s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 1338s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 1338s Selecting previously unselected package libwebp7:arm64. 1339s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 1339s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 1339s Selecting previously unselected package libtiff6:arm64. 1339s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 1339s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1339s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 1339s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 1339s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 1339s Selecting previously unselected package gtk-update-icon-cache. 1339s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 1339s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 1340s Selecting previously unselected package hicolor-icon-theme. 1340s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 1340s Unpacking hicolor-icon-theme (0.17-2) ... 1340s Selecting previously unselected package humanity-icon-theme. 1340s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 1340s Unpacking humanity-icon-theme (0.6.16) ... 1350s Selecting previously unselected package ubuntu-mono. 1350s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 1350s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 1356s Selecting previously unselected package adwaita-icon-theme. 1356s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 1356s Unpacking adwaita-icon-theme (46~rc-1) ... 1359s Selecting previously unselected package at-spi2-common. 1359s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 1359s Unpacking at-spi2-common (2.50.0-1) ... 1359s Selecting previously unselected package ca-certificates-java. 1359s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 1359s Unpacking ca-certificates-java (20240118) ... 1360s Selecting previously unselected package java-common. 1360s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 1360s Unpacking java-common (0.75+exp1) ... 1360s Selecting previously unselected package libavahi-common-data:arm64. 1360s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 1360s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 1360s Selecting previously unselected package libavahi-common3:arm64. 1360s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 1360s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 1360s Selecting previously unselected package libavahi-client3:arm64. 1360s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 1360s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 1360s Selecting previously unselected package libcups2:arm64. 1360s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 1360s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 1360s Selecting previously unselected package liblcms2-2:arm64. 1360s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 1360s Unpacking liblcms2-2:arm64 (2.14-2) ... 1361s Selecting previously unselected package fonts-dejavu-mono. 1361s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 1361s Unpacking fonts-dejavu-mono (2.37-8) ... 1361s Selecting previously unselected package fonts-dejavu-core. 1361s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 1361s Unpacking fonts-dejavu-core (2.37-8) ... 1361s Selecting previously unselected package fontconfig-config. 1361s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 1363s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1363s Selecting previously unselected package libfontconfig1:arm64. 1363s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 1363s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1364s Selecting previously unselected package libasound2-data. 1364s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 1364s Unpacking libasound2-data (1.2.10-3build1) ... 1364s Selecting previously unselected package libasound2:arm64. 1364s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 1364s Unpacking libasound2:arm64 (1.2.10-3build1) ... 1364s Selecting previously unselected package libgraphite2-3:arm64. 1364s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 1364s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 1364s Selecting previously unselected package libharfbuzz0b:arm64. 1365s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 1365s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 1365s Selecting previously unselected package libpcsclite1:arm64. 1365s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 1365s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 1365s Selecting previously unselected package openjdk-21-jre-headless:arm64. 1365s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 1365s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 1382s Selecting previously unselected package default-jre-headless. 1382s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 1382s Unpacking default-jre-headless (2:1.21-75+exp1) ... 1382s Selecting previously unselected package libgtk2.0-common. 1382s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 1382s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 1382s Selecting previously unselected package libatk1.0-0:arm64. 1382s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 1382s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 1382s Selecting previously unselected package libpixman-1-0:arm64. 1382s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 1382s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 1383s Selecting previously unselected package libxcb-render0:arm64. 1383s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 1383s Unpacking libxcb-render0:arm64 (1.15-1) ... 1383s Selecting previously unselected package libxcb-shm0:arm64. 1383s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 1383s Unpacking libxcb-shm0:arm64 (1.15-1) ... 1383s Selecting previously unselected package libxrender1:arm64. 1383s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 1383s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 1383s Selecting previously unselected package libcairo2:arm64. 1383s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 1383s Unpacking libcairo2:arm64 (1.18.0-1) ... 1383s Selecting previously unselected package fontconfig. 1383s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 1383s Unpacking fontconfig (2.15.0-1ubuntu1) ... 1384s Selecting previously unselected package libthai-data. 1384s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 1384s Unpacking libthai-data (0.1.29-2) ... 1384s Selecting previously unselected package libdatrie1:arm64. 1384s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 1384s Unpacking libdatrie1:arm64 (0.2.13-3) ... 1384s Selecting previously unselected package libthai0:arm64. 1384s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 1384s Unpacking libthai0:arm64 (0.1.29-2) ... 1384s Selecting previously unselected package libpango-1.0-0:arm64. 1384s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 1384s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1384s Selecting previously unselected package libpangoft2-1.0-0:arm64. 1384s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 1384s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 1384s Selecting previously unselected package libpangocairo-1.0-0:arm64. 1384s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 1384s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 1385s Selecting previously unselected package libxcomposite1:arm64. 1385s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 1385s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 1385s Selecting previously unselected package libxfixes3:arm64. 1385s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 1385s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 1385s Selecting previously unselected package libxcursor1:arm64. 1385s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 1385s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 1385s Selecting previously unselected package libxdamage1:arm64. 1385s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 1385s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 1385s Selecting previously unselected package libxi6:arm64. 1385s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 1386s Unpacking libxi6:arm64 (2:1.8.1-1) ... 1386s Selecting previously unselected package libxinerama1:arm64. 1386s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 1386s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 1386s Selecting previously unselected package libxrandr2:arm64. 1386s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 1386s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 1386s Selecting previously unselected package libgtk2.0-0:arm64. 1386s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 1386s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 1386s Selecting previously unselected package libglvnd0:arm64. 1386s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 1386s Unpacking libglvnd0:arm64 (1.7.0-1) ... 1387s Selecting previously unselected package libglapi-mesa:arm64. 1387s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 1387s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1387s Selecting previously unselected package libx11-xcb1:arm64. 1387s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 1387s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 1387s Selecting previously unselected package libxcb-dri2-0:arm64. 1387s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 1387s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 1387s Selecting previously unselected package libxcb-dri3-0:arm64. 1387s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 1387s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 1387s Selecting previously unselected package libxcb-glx0:arm64. 1388s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 1388s Unpacking libxcb-glx0:arm64 (1.15-1) ... 1388s Selecting previously unselected package libxcb-present0:arm64. 1388s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 1388s Unpacking libxcb-present0:arm64 (1.15-1) ... 1388s Selecting previously unselected package libxcb-randr0:arm64. 1388s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 1388s Unpacking libxcb-randr0:arm64 (1.15-1) ... 1388s Selecting previously unselected package libxcb-sync1:arm64. 1388s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 1388s Unpacking libxcb-sync1:arm64 (1.15-1) ... 1388s Selecting previously unselected package libxcb-xfixes0:arm64. 1388s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 1388s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 1388s Selecting previously unselected package libxshmfence1:arm64. 1388s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 1388s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 1388s Selecting previously unselected package libxxf86vm1:arm64. 1388s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 1388s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1388s Selecting previously unselected package libvulkan1:arm64. 1388s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 1388s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 1389s Selecting previously unselected package libdrm-amdgpu1:arm64. 1389s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 1389s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 1389s Selecting previously unselected package libdrm-nouveau2:arm64. 1389s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 1389s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 1389s Selecting previously unselected package libdrm-radeon1:arm64. 1389s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 1389s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 1389s Selecting previously unselected package libllvm17:arm64. 1389s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 1389s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 1396s Selecting previously unselected package libgl1-mesa-dri:arm64. 1396s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 1396s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1397s Selecting previously unselected package libglx-mesa0:arm64. 1397s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 1397s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1398s Selecting previously unselected package libglx0:arm64. 1398s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 1398s Unpacking libglx0:arm64 (1.7.0-1) ... 1398s Selecting previously unselected package libgl1:arm64. 1398s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 1398s Unpacking libgl1:arm64 (1.7.0-1) ... 1398s Selecting previously unselected package libgif7:arm64. 1398s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 1398s Unpacking libgif7:arm64 (5.2.1-2.5) ... 1398s Selecting previously unselected package x11-common. 1398s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 1398s Unpacking x11-common (1:7.7+23ubuntu2) ... 1399s Selecting previously unselected package libxtst6:arm64. 1399s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 1399s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 1399s Selecting previously unselected package openjdk-21-jre:arm64. 1399s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 1399s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 1400s Selecting previously unselected package default-jre. 1400s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 1400s Unpacking default-jre (2:1.21-75+exp1) ... 1400s Selecting previously unselected package unzip. 1400s Preparing to unpack .../082-unzip_6.0-28ubuntu3_arm64.deb ... 1400s Unpacking unzip (6.0-28ubuntu3) ... 1400s Selecting previously unselected package java-wrappers. 1400s Preparing to unpack .../083-java-wrappers_0.4_all.deb ... 1400s Unpacking java-wrappers (0.4) ... 1401s Selecting previously unselected package libjaxp1.3-java. 1401s Preparing to unpack .../084-libjaxp1.3-java_1.3.05-6_all.deb ... 1401s Unpacking libjaxp1.3-java (1.3.05-6) ... 1401s Selecting previously unselected package libxml-commons-external-java. 1401s Preparing to unpack .../085-libxml-commons-external-java_1.4.01-6_all.deb ... 1401s Unpacking libxml-commons-external-java (1.4.01-6) ... 1401s Selecting previously unselected package libapache-pom-java. 1401s Preparing to unpack .../086-libapache-pom-java_29-2_all.deb ... 1401s Unpacking libapache-pom-java (29-2) ... 1401s Selecting previously unselected package libcommons-parent-java. 1401s Preparing to unpack .../087-libcommons-parent-java_56-1_all.deb ... 1401s Unpacking libcommons-parent-java (56-1) ... 1401s Selecting previously unselected package libcommons-io-java. 1401s Preparing to unpack .../088-libcommons-io-java_2.11.0-2_all.deb ... 1401s Unpacking libcommons-io-java (2.11.0-2) ... 1402s Selecting previously unselected package libcommons-logging-java. 1402s Preparing to unpack .../089-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 1402s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 1402s Selecting previously unselected package libxmlgraphics-commons-java. 1402s Preparing to unpack .../090-libxmlgraphics-commons-java_2.8-2_all.deb ... 1402s Unpacking libxmlgraphics-commons-java (2.8-2) ... 1402s Selecting previously unselected package libbatik-java. 1402s Preparing to unpack .../091-libbatik-java_1.17+dfsg-1_all.deb ... 1402s Unpacking libbatik-java (1.17+dfsg-1) ... 1403s Selecting previously unselected package libcommons-compress-java. 1403s Preparing to unpack .../092-libcommons-compress-java_1.25.0-1_all.deb ... 1403s Unpacking libcommons-compress-java (1.25.0-1) ... 1403s Selecting previously unselected package libcommons-jexl2-java. 1403s Preparing to unpack .../093-libcommons-jexl2-java_2.1.1-6_all.deb ... 1403s Unpacking libcommons-jexl2-java (2.1.1-6) ... 1403s Selecting previously unselected package libmjson-java. 1403s Preparing to unpack .../094-libmjson-java_1.4.0-3_all.deb ... 1403s Unpacking libmjson-java (1.4.0-3) ... 1403s Selecting previously unselected package libmbedcrypto7:arm64. 1403s Preparing to unpack .../095-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 1403s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 1404s Selecting previously unselected package libmbedx509-1:arm64. 1404s Preparing to unpack .../096-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 1404s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 1404s Selecting previously unselected package libmbedtls14:arm64. 1404s Preparing to unpack .../097-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 1404s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 1404s Selecting previously unselected package ncbi-vdb-data. 1404s Preparing to unpack .../098-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 1404s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 1404s Selecting previously unselected package libncbi-vdb3:arm64. 1404s Preparing to unpack .../099-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 1404s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 1404s Selecting previously unselected package libncbi-ngs3:arm64. 1404s Preparing to unpack .../100-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1404s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 1405s Selecting previously unselected package libngs-jni:arm64. 1405s Preparing to unpack .../101-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1405s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 1405s Selecting previously unselected package libngs-java:arm64. 1405s Preparing to unpack .../102-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 1405s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 1405s Selecting previously unselected package librhino-java. 1405s Preparing to unpack .../103-librhino-java_1.7.14-2.1_all.deb ... 1405s Unpacking librhino-java (1.7.14-2.1) ... 1405s Selecting previously unselected package libsnappy1v5:arm64. 1405s Preparing to unpack .../104-libsnappy1v5_1.1.10-1_arm64.deb ... 1405s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 1405s Selecting previously unselected package libsnappy-jni. 1405s Preparing to unpack .../105-libsnappy-jni_1.1.10.5-1_arm64.deb ... 1405s Unpacking libsnappy-jni (1.1.10.5-1) ... 1406s Selecting previously unselected package libsnappy-java. 1406s Preparing to unpack .../106-libsnappy-java_1.1.10.5-1_all.deb ... 1406s Unpacking libsnappy-java (1.1.10.5-1) ... 1406s Selecting previously unselected package libhtsjdk-java. 1406s Preparing to unpack .../107-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 1406s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 1406s Selecting previously unselected package libjheatchart-java. 1406s Preparing to unpack .../108-libjheatchart-java_0.6-1.1_all.deb ... 1406s Unpacking libjheatchart-java (0.6-1.1) ... 1406s Selecting previously unselected package chromhmm. 1406s Preparing to unpack .../109-chromhmm_1.25+dfsg-1_all.deb ... 1406s Unpacking chromhmm (1.25+dfsg-1) ... 1406s Selecting previously unselected package chromhmm-example. 1406s Preparing to unpack .../110-chromhmm-example_1.25+dfsg-1_all.deb ... 1406s Unpacking chromhmm-example (1.25+dfsg-1) ... 1408s Selecting previously unselected package autopkgtest-satdep. 1408s Preparing to unpack .../111-2-autopkgtest-satdep.deb ... 1408s Unpacking autopkgtest-satdep (0) ... 1409s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 1409s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 1409s Setting up liblcms2-2:arm64 (2.14-2) ... 1409s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 1409s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 1409s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 1409s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 1409s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 1409s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 1409s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1409s Setting up hicolor-icon-theme (0.17-2) ... 1409s Setting up libxi6:arm64 (2:1.8.1-1) ... 1409s Setting up java-common (0.75+exp1) ... 1409s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 1409s Setting up libdatrie1:arm64 (0.2.13-3) ... 1409s Setting up libxcb-render0:arm64 (1.15-1) ... 1409s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 1409s Setting up libglvnd0:arm64 (1.7.0-1) ... 1409s Setting up libmjson-java (1.4.0-3) ... 1409s Setting up libxcb-glx0:arm64 (1.15-1) ... 1409s Setting up unzip (6.0-28ubuntu3) ... 1409s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 1409s Setting up x11-common (1:7.7+23ubuntu2) ... 1412s Setting up libdeflate0:arm64 (1.19-1) ... 1412s Setting up libxcb-shm0:arm64 (1.15-1) ... 1412s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 1412s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 1412s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 1412s Setting up libxcb-present0:arm64 (1.15-1) ... 1412s Setting up libasound2-data (1.2.10-3build1) ... 1412s Setting up chromhmm-example (1.25+dfsg-1) ... 1412s Setting up librhino-java (1.7.14-2.1) ... 1412s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 1412s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 1412s Setting up libxcb-sync1:arm64 (1.15-1) ... 1412s Setting up libapache-pom-java (29-2) ... 1412s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 1412s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 1412s Setting up fonts-dejavu-mono (2.37-8) ... 1412s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 1413s Setting up fonts-dejavu-core (2.37-8) ... 1413s Setting up libpcsclite1:arm64 (2.0.0-1) ... 1413s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1413s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 1413s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 1413s Setting up libwebp7:arm64 (1.3.2-0.4) ... 1413s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 1413s Setting up libgif7:arm64 (5.2.1-2.5) ... 1413s Setting up libxshmfence1:arm64 (1.3-1build4) ... 1413s Setting up at-spi2-common (2.50.0-1) ... 1413s Setting up libxcb-randr0:arm64 (1.15-1) ... 1413s Setting up libxml-commons-external-java (1.4.01-6) ... 1413s Setting up libasound2:arm64 (1.2.10-3build1) ... 1413s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 1413s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 1413s Setting up libthai-data (0.1.29-2) ... 1413s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 1413s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 1413s Setting up ca-certificates-java (20240118) ... 1413s No JRE found. Skipping Java certificates setup. 1413s Setting up libjheatchart-java (0.6-1.1) ... 1413s Setting up libjaxp1.3-java (1.3.05-6) ... 1413s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 1413s Setting up libsnappy-jni (1.1.10.5-1) ... 1413s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 1413s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 1413s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 1413s Setting up java-wrappers (0.4) ... 1413s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 1413s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 1413s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 1416s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 1416s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 1416s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 1416s Setting up libcommons-parent-java (56-1) ... 1416s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 1416s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 1416s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 1416s Setting up libcommons-jexl2-java (2.1.1-6) ... 1416s Setting up libthai0:arm64 (0.1.29-2) ... 1416s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1416s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 1416s Setting up libsnappy-java (1.1.10.5-1) ... 1416s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1416s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 1416s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 1416s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 1416s Setting up fontconfig (2.15.0-1ubuntu1) ... 1419s Regenerating fonts cache... done. 1419s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 1419s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 1419s Setting up libglx0:arm64 (1.7.0-1) ... 1419s Setting up libcommons-compress-java (1.25.0-1) ... 1419s Setting up libcommons-io-java (2.11.0-2) ... 1419s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1419s Setting up libxmlgraphics-commons-java (2.8-2) ... 1419s Setting up libcairo2:arm64 (1.18.0-1) ... 1419s Setting up libgl1:arm64 (1.7.0-1) ... 1419s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 1419s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 1419s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 1419s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 1419s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 1419s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 1419s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 1419s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 1419s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 1419s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 1419s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 1419s Setting up libbatik-java (1.17+dfsg-1) ... 1419s Setting up adwaita-icon-theme (46~rc-1) ... 1419s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 1419s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 1419s Setting up humanity-icon-theme (0.6.16) ... 1421s Setting up ubuntu-mono (24.04-0ubuntu1) ... 1421s Processing triggers for man-db (2.12.0-3) ... 1426s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1426s Processing triggers for ca-certificates-java (20240118) ... 1430s Adding debian:ACCVRAIZ1.pem 1430s Adding debian:AC_RAIZ_FNMT-RCM.pem 1430s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 1430s Adding debian:ANF_Secure_Server_Root_CA.pem 1430s Adding debian:Actalis_Authentication_Root_CA.pem 1430s Adding debian:AffirmTrust_Commercial.pem 1430s Adding debian:AffirmTrust_Networking.pem 1430s Adding debian:AffirmTrust_Premium.pem 1430s Adding debian:AffirmTrust_Premium_ECC.pem 1430s Adding debian:Amazon_Root_CA_1.pem 1430s Adding debian:Amazon_Root_CA_2.pem 1430s Adding debian:Amazon_Root_CA_3.pem 1430s Adding debian:Amazon_Root_CA_4.pem 1430s Adding debian:Atos_TrustedRoot_2011.pem 1430s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 1430s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 1430s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 1430s Adding debian:BJCA_Global_Root_CA1.pem 1430s Adding debian:BJCA_Global_Root_CA2.pem 1430s Adding debian:Baltimore_CyberTrust_Root.pem 1430s Adding debian:Buypass_Class_2_Root_CA.pem 1430s Adding debian:Buypass_Class_3_Root_CA.pem 1430s Adding debian:CA_Disig_Root_R2.pem 1430s Adding debian:CFCA_EV_ROOT.pem 1430s Adding debian:COMODO_Certification_Authority.pem 1430s Adding debian:COMODO_ECC_Certification_Authority.pem 1430s Adding debian:COMODO_RSA_Certification_Authority.pem 1430s Adding debian:Certainly_Root_E1.pem 1430s Adding debian:Certainly_Root_R1.pem 1430s Adding debian:Certigna.pem 1430s Adding debian:Certigna_Root_CA.pem 1430s Adding debian:Certum_EC-384_CA.pem 1430s Adding debian:Certum_Trusted_Network_CA.pem 1430s Adding debian:Certum_Trusted_Network_CA_2.pem 1430s Adding debian:Certum_Trusted_Root_CA.pem 1430s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 1430s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 1430s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 1431s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 1431s Adding debian:Comodo_AAA_Services_root.pem 1431s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 1431s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 1431s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 1431s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 1431s Adding debian:DigiCert_Assured_ID_Root_CA.pem 1431s Adding debian:DigiCert_Assured_ID_Root_G2.pem 1431s Adding debian:DigiCert_Assured_ID_Root_G3.pem 1431s Adding debian:DigiCert_Global_Root_CA.pem 1431s Adding debian:DigiCert_Global_Root_G2.pem 1431s Adding debian:DigiCert_Global_Root_G3.pem 1431s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 1431s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 1431s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 1431s Adding debian:DigiCert_Trusted_Root_G4.pem 1431s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 1431s Adding debian:Entrust_Root_Certification_Authority.pem 1431s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 1431s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 1431s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 1431s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 1431s Adding debian:GLOBALTRUST_2020.pem 1431s Adding debian:GTS_Root_R1.pem 1431s Adding debian:GTS_Root_R2.pem 1431s Adding debian:GTS_Root_R3.pem 1431s Adding debian:GTS_Root_R4.pem 1431s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 1431s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 1431s Adding debian:GlobalSign_Root_CA.pem 1431s Adding debian:GlobalSign_Root_CA_-_R3.pem 1431s Adding debian:GlobalSign_Root_CA_-_R6.pem 1431s Adding debian:GlobalSign_Root_E46.pem 1431s Adding debian:GlobalSign_Root_R46.pem 1431s Adding debian:Go_Daddy_Class_2_CA.pem 1432s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 1432s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 1432s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 1432s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 1432s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 1432s Adding debian:HiPKI_Root_CA_-_G1.pem 1432s Adding debian:Hongkong_Post_Root_CA_3.pem 1432s Adding debian:ISRG_Root_X1.pem 1432s Adding debian:ISRG_Root_X2.pem 1432s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 1432s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 1432s Adding debian:Izenpe.com.pem 1432s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 1432s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 1432s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 1432s Adding debian:NAVER_Global_Root_Certification_Authority.pem 1432s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 1432s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 1432s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 1432s Adding debian:QuoVadis_Root_CA_1_G3.pem 1432s Adding debian:QuoVadis_Root_CA_2.pem 1432s Adding debian:QuoVadis_Root_CA_2_G3.pem 1433s Adding debian:QuoVadis_Root_CA_3.pem 1433s Adding debian:QuoVadis_Root_CA_3_G3.pem 1433s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 1433s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 1433s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 1433s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 1433s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 1433s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 1433s Adding debian:SZAFIR_ROOT_CA2.pem 1433s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 1433s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 1433s Adding debian:SecureSign_RootCA11.pem 1433s Adding debian:SecureTrust_CA.pem 1433s Adding debian:Secure_Global_CA.pem 1433s Adding debian:Security_Communication_ECC_RootCA1.pem 1433s Adding debian:Security_Communication_RootCA2.pem 1433s Adding debian:Security_Communication_RootCA3.pem 1433s Adding debian:Security_Communication_Root_CA.pem 1433s Adding debian:Starfield_Class_2_CA.pem 1433s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 1433s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 1433s Adding debian:SwissSign_Gold_CA_-_G2.pem 1433s Adding debian:SwissSign_Silver_CA_-_G2.pem 1433s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 1433s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 1433s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 1433s Adding debian:TWCA_Global_Root_CA.pem 1433s Adding debian:TWCA_Root_Certification_Authority.pem 1433s Adding debian:TeliaSonera_Root_CA_v1.pem 1433s Adding debian:Telia_Root_CA_v2.pem 1433s Adding debian:TrustAsia_Global_Root_CA_G3.pem 1433s Adding debian:TrustAsia_Global_Root_CA_G4.pem 1434s Adding debian:Trustwave_Global_Certification_Authority.pem 1434s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 1434s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 1434s Adding debian:TunTrust_Root_CA.pem 1434s Adding debian:UCA_Extended_Validation_Root.pem 1434s Adding debian:UCA_Global_G2_Root.pem 1434s Adding debian:USERTrust_ECC_Certification_Authority.pem 1434s Adding debian:USERTrust_RSA_Certification_Authority.pem 1434s Adding debian:XRamp_Global_CA_Root.pem 1434s Adding debian:certSIGN_ROOT_CA.pem 1434s Adding debian:certSIGN_Root_CA_G2.pem 1434s Adding debian:e-Szigno_Root_CA_2017.pem 1434s Adding debian:ePKI_Root_Certification_Authority.pem 1434s Adding debian:emSign_ECC_Root_CA_-_C3.pem 1434s Adding debian:emSign_ECC_Root_CA_-_G3.pem 1434s Adding debian:emSign_Root_CA_-_C1.pem 1434s Adding debian:emSign_Root_CA_-_G1.pem 1434s Adding debian:vTrus_ECC_Root_CA.pem 1434s Adding debian:vTrus_Root_CA.pem 1434s done. 1434s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 1434s Setting up default-jre-headless (2:1.21-75+exp1) ... 1434s Setting up chromhmm (1.25+dfsg-1) ... 1434s Setting up autopkgtest-satdep (0) ... 1434s Setting up default-jre (2:1.21-75+exp1) ... 1466s (Reading database ... 90056 files and directories currently installed.) 1466s Removing autopkgtest-satdep (0) ... 1499s autopkgtest [17:51:33]: test chromhmm-run-sample-analysis: [----------------------- 1502s This is Version 1.25 of ChromHMM (c) Copyright 2008-2012 Massachusetts Institute of Technology 1503s Need to specify the mode BinarizeBam|BinarizeBed|BinarizeSignal|CompareModels|ConvertGeneTable|EvalSubset|LearnModel|MakeBrowserFiles|MakeSegmentation|MergeBinary|NeighborhoodEnrichment|StatePruning|OverlapEnrichment|Reorder|Version 1504s autopkgtest [17:51:38]: test chromhmm-run-sample-analysis: -----------------------] 1505s chromhmm-run-sample-analysis PASS 1505s autopkgtest [17:51:39]: test chromhmm-run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 1506s autopkgtest [17:51:40]: test drop-seq-run-unit-test: preparing testbed 1801s autopkgtest [17:56:35]: testbed dpkg architecture: arm64 1801s autopkgtest [17:56:35]: testbed apt version: 2.7.12 1801s autopkgtest [17:56:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1803s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1804s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 1805s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 1805s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 1807s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 1807s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [710 kB] 1808s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 1808s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 1808s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 1808s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 1810s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 1810s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 1810s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 1820s Fetched 9851 kB in 9s (1106 kB/s) 1821s Reading package lists... 1828s Reading package lists... 1829s Building dependency tree... 1829s Reading state information... 1831s Calculating upgrade... 1832s The following packages will be REMOVED: 1832s libssl3 1833s The following NEW packages will be installed: 1833s libssl3t64 1833s The following packages have been kept back: 1833s curl 1833s The following packages will be upgraded: 1833s openssl 1833s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 1833s Need to get 2777 kB of archives. 1833s After this operation, 139 kB of additional disk space will be used. 1833s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 1833s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 1836s Fetched 2777 kB in 1s (2584 kB/s) 1836s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 1836s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 1836s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 1837s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 1837s wget depends on libssl3 (>= 3.0.0). 1837s u-boot-tools depends on libssl3 (>= 3.0.0). 1837s tnftp depends on libssl3 (>= 3.0.0). 1837s tcpdump depends on libssl3 (>= 3.0.0). 1837s systemd-resolved depends on libssl3 (>= 3.0.0). 1837s systemd depends on libssl3 (>= 3.0.0). 1837s sudo depends on libssl3 (>= 3.0.0). 1837s sbsigntool depends on libssl3 (>= 3.0.0). 1837s rsync depends on libssl3 (>= 3.0.0). 1837s python3-cryptography depends on libssl3 (>= 3.0.0). 1837s openssh-server depends on libssl3 (>= 3.0.10). 1837s openssh-client depends on libssl3 (>= 3.0.10). 1837s mtd-utils depends on libssl3 (>= 3.0.0). 1837s mokutil depends on libssl3 (>= 3.0.0). 1837s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 1837s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 1837s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 1837s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 1837s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 1837s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 1837s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 1837s libnvme1 depends on libssl3 (>= 3.0.0). 1837s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 1837s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 1837s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 1837s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 1837s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 1837s kmod depends on libssl3 (>= 3.0.0). 1837s dhcpcd-base depends on libssl3 (>= 3.0.0). 1837s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 1837s 1837s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 1837s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 1837s Selecting previously unselected package libssl3t64:arm64. 1837s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 1837s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 1837s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 1838s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 1838s Setting up openssl (3.0.13-0ubuntu2) ... 1838s Processing triggers for man-db (2.12.0-3) ... 1841s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1843s Reading package lists... 1844s Building dependency tree... 1844s Reading state information... 1846s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 1848s sh: Attempting to set up Debian/Ubuntu apt sources automatically 1848s sh: Distribution appears to be Ubuntu 1851s Reading package lists... 1852s Building dependency tree... 1852s Reading state information... 1854s eatmydata is already the newest version (131-1). 1854s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1854s Reading package lists... 1855s Building dependency tree... 1855s Reading state information... 1857s dbus is already the newest version (1.14.10-4ubuntu1). 1857s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1857s Reading package lists... 1858s Building dependency tree... 1858s Reading state information... 1860s rng-tools-debian is already the newest version (2.4). 1860s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1860s Reading package lists... 1861s Building dependency tree... 1861s Reading state information... 1862s The following packages will be REMOVED: 1862s cloud-init* python3-configobj* python3-debconf* 1864s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 1864s After this operation, 3256 kB disk space will be freed. 1864s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 1864s Removing cloud-init (24.1.2-0ubuntu1) ... 1866s Removing python3-configobj (5.0.8-3) ... 1867s Removing python3-debconf (1.5.86) ... 1867s Processing triggers for man-db (2.12.0-3) ... 1868s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 1868s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 1871s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1871s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1871s invoke-rc.d: policy-rc.d denied execution of try-restart. 1872s Reading package lists... 1873s Building dependency tree... 1873s Reading state information... 1875s linux-generic is already the newest version (6.8.0-11.11+1). 1875s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1877s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1877s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1877s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1891s Reading package lists... 1891s Reading package lists... 1892s Building dependency tree... 1892s Reading state information... 1895s Calculating upgrade... 1897s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1897s Reading package lists... 1898s Building dependency tree... 1898s Reading state information... 1900s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1900s autopkgtest [17:58:14]: rebooting testbed after setup commands that affected boot 2076s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 2108s Reading package lists... 2110s Building dependency tree... 2110s Reading state information... 2112s Starting pkgProblemResolver with broken count: 0 2113s Starting 2 pkgProblemResolver with broken count: 0 2113s Done 2117s The following additional packages will be installed: 2117s adwaita-icon-theme ant ant-optional at-spi2-common ca-certificates-java 2117s default-jre default-jre-headless drop-seq-testdata drop-seq-tools fontconfig 2117s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 2117s hicolor-icon-theme humanity-icon-theme java-common java-wrappers 2117s libactivation-java libantlr4-runtime-java libaopalliance-java 2117s libapache-pom-java libapfloat-java libargs4j-java libasm-java libasound2 2117s libasound2-data libatinject-jsr330-api-java libatk1.0-0 libavahi-client3 2117s libavahi-common-data libavahi-common3 libbarclay-java libbiojava6-java 2117s libcairo2 libcdi-api-java libciftools-java libcodemodel-java 2117s libcommons-cli-java libcommons-codec-java libcommons-collections4-java 2117s libcommons-compress-java libcommons-exec-java libcommons-io-java 2117s libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java 2117s libcommons-logging-java libcommons-math-java libcommons-math3-java 2117s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 2117s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 2117s libdtd-parser-java liberror-prone-java libexec-maven-plugin-java 2117s libfastinfoset-java libfastutil-java libfontconfig1 libfreemarker-java 2117s libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 2117s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 2117s libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 2117s libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 2117s libgtk2.0-common libguava-java libguice-java libharfbuzz0b libhts3 2117s libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libinchi1 2117s libistack-commons-java libitext5-java libjackson2-annotations-java 2117s libjackson2-core-java libjackson2-databind-java libjaxb-api-java 2117s libjaxb-java libjaxen-java libjbig0 libjgrapht-java libjgraphx-java 2117s libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni 2117s libjoptsimple-java libjpeg-turbo8 libjpeg8 libjson-simple-java libjsoup-java 2117s libjsr305-java libla4j-java liblcms2-2 liblerc4 liblightcouch-java libllvm17 2117s liblog4j1.2-java liblog4j2-java libmaven-archiver-java 2117s libmaven-compiler-plugin-java libmaven-file-management-java 2117s libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java 2117s libmaven-shared-incremental-java libmaven-shared-io-java 2117s libmaven-shared-utils-java libmaven3-core-java libmbedcrypto7 libmbedtls14 2117s libmbedx509-1 libmjson-java libmmtf-java libmongodb-java libmsgpack-java 2117s libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 2117s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpicard-java 2117s libpixman-1-0 libplexus-archiver-java libplexus-cipher-java 2117s libplexus-classworlds-java libplexus-compiler-java 2117s libplexus-component-annotations-java libplexus-container-default-java 2117s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 2117s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox2-java 2117s librelaxng-datatype-java librhino-java librngom-java libsharpyuv0 2117s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 2117s libsnappy-jni libsnappy1v5 libstax-ex-java libstreambuffer-java libthai-data 2117s libthai0 libtiff6 libtxw2-java libvecmath-java libvulkan1 libwagon-http-java 2117s libwagon-provider-api-java libwebp7 libx11-xcb1 libxbean-reflect-java 2117s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 2117s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 2117s libxcursor1 libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 2117s libxml-commons-external-java libxml-commons-resolver1.1-java libxrandr2 2117s libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java 2117s libyaml-snake-java ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless 2117s picard-tools samtools ubuntu-mono unzip x11-common 2117s Suggested packages: 2117s ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit junit4 2117s jython libbcel-java libbsf-java libcommons-net-java libmail-java 2117s libjaxp1.3-java libjdepend-java libjsch-java liboro-java libregexp-java 2117s libxalan2-java libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc 2117s libbiojava6-java-doc libel-api-java libcommons-collections4-java-doc 2117s libcommons-io-java-doc libcommons-lang-java-doc libavalon-framework-java 2117s libexcalibur-logkit-java cups-common libmsv-java libxpp2-java libxpp3-java 2117s libjdom1-java libgoogle-gson-java-doc gvfs libcglib-java libbcpkix-java 2117s libbcprov-java libxml-security-java libjackson2-annotations-java-doc 2117s libxom-java libjmol-java-doc libjoptsimple-java-doc libjson-simple-doc 2117s libjsoup-java-doc libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc 2117s libcommons-csv-java libconversant-disruptor-java libdisruptor-java 2117s libgeronimo-jms-1.1-spec-java libjackson2-dataformat-xml-java 2117s libjackson2-dataformat-yaml libjansi-java libjctools-java libjeromq-java 2117s libwoodstox-java libmaven-file-management-java-doc 2117s libmaven-shared-incremental-java-doc libmaven-shared-utils-java-doc 2117s liblogback-java libmmtf-java-doc libngs-java-doc pcscd 2117s libeclipse-jdt-core-java libplexus-utils2-java-doc rhino testng 2117s libxerces2-java-doc libxml-commons-resolver1.1-java-doc libnss-mdns 2117s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 2117s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic cwltool zip 2117s Recommended packages: 2117s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 2117s libgkl-jni libgl1-amber-dri libgail-common libgtk2.0-bin libjansi-java 2117s r-base-core mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni 2117s fonts-dejavu-extra 2118s The following NEW packages will be installed: 2118s adwaita-icon-theme ant ant-optional at-spi2-common autopkgtest-satdep 2118s ca-certificates-java default-jre default-jre-headless drop-seq-testdata 2118s drop-seq-tools fontconfig fontconfig-config fonts-dejavu-core 2118s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 2118s humanity-icon-theme java-common java-wrappers libactivation-java 2118s libantlr4-runtime-java libaopalliance-java libapache-pom-java 2118s libapfloat-java libargs4j-java libasm-java libasound2 libasound2-data 2118s libatinject-jsr330-api-java libatk1.0-0 libavahi-client3 2118s libavahi-common-data libavahi-common3 libbarclay-java libbiojava6-java 2118s libcairo2 libcdi-api-java libciftools-java libcodemodel-java 2118s libcommons-cli-java libcommons-codec-java libcommons-collections4-java 2118s libcommons-compress-java libcommons-exec-java libcommons-io-java 2118s libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java 2118s libcommons-logging-java libcommons-math-java libcommons-math3-java 2118s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 2118s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 2118s libdtd-parser-java liberror-prone-java libexec-maven-plugin-java 2118s libfastinfoset-java libfastutil-java libfontconfig1 libfreemarker-java 2118s libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 2118s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 2118s libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 2118s libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 2118s libgtk2.0-common libguava-java libguice-java libharfbuzz0b libhts3 2118s libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libinchi1 2118s libistack-commons-java libitext5-java libjackson2-annotations-java 2118s libjackson2-core-java libjackson2-databind-java libjaxb-api-java 2118s libjaxb-java libjaxen-java libjbig0 libjgrapht-java libjgraphx-java 2118s libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni 2118s libjoptsimple-java libjpeg-turbo8 libjpeg8 libjson-simple-java libjsoup-java 2118s libjsr305-java libla4j-java liblcms2-2 liblerc4 liblightcouch-java libllvm17 2118s liblog4j1.2-java liblog4j2-java libmaven-archiver-java 2118s libmaven-compiler-plugin-java libmaven-file-management-java 2118s libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java 2118s libmaven-shared-incremental-java libmaven-shared-io-java 2118s libmaven-shared-utils-java libmaven3-core-java libmbedcrypto7 libmbedtls14 2118s libmbedx509-1 libmjson-java libmmtf-java libmongodb-java libmsgpack-java 2118s libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 2118s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpicard-java 2118s libpixman-1-0 libplexus-archiver-java libplexus-cipher-java 2118s libplexus-classworlds-java libplexus-compiler-java 2118s libplexus-component-annotations-java libplexus-container-default-java 2118s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 2118s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox2-java 2118s librelaxng-datatype-java librhino-java librngom-java libsharpyuv0 2118s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 2118s libsnappy-jni libsnappy1v5 libstax-ex-java libstreambuffer-java libthai-data 2118s libthai0 libtiff6 libtxw2-java libvecmath-java libvulkan1 libwagon-http-java 2118s libwagon-provider-api-java libwebp7 libx11-xcb1 libxbean-reflect-java 2118s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 2118s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 2118s libxcursor1 libxdamage1 libxerces2-java libxfixes3 libxi6 libxinerama1 2118s libxml-commons-external-java libxml-commons-resolver1.1-java libxrandr2 2118s libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java 2118s libyaml-snake-java ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless 2118s picard-tools samtools ubuntu-mono unzip x11-common 2119s 0 upgraded, 218 newly installed, 0 to remove and 0 not upgraded. 2119s Need to get 320 MB/320 MB of archives. 2119s After this operation, 696 MB of additional disk space will be used. 2119s Get:1 /tmp/autopkgtest.w2H4x5/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 2119s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 2119s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 2119s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 2119s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 2119s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 2119s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 2119s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 2119s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 2120s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 2120s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 2120s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 2120s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 2120s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 2120s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 2120s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 2120s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 2120s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 2120s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 2120s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 2120s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 2120s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 2121s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 2121s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 2121s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 2121s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 2121s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 2121s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 2121s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 2121s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 2121s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 2121s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 2121s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 2127s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 2127s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 ant all 1.10.14-1 [2147 kB] 2127s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 ant-optional all 1.10.14-1 [451 kB] 2127s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 2127s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 2127s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 2127s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 2127s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 2127s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 2127s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 2127s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 2127s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 2127s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 2127s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 2127s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 2127s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 2127s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 2127s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 2127s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 2127s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 2127s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 2127s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 2127s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 2127s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 2127s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 2127s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 2128s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 2128s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 2128s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 2128s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 2128s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 2128s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 2128s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 2128s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 2128s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 2128s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 2128s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 2128s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 2128s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 2128s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 2128s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 2128s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 2128s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 2130s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 2131s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 2131s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 2131s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 2131s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 2131s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 2131s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 2131s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 2131s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 2131s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 drop-seq-testdata all 2.5.4+dfsg-1 [142 MB] 2146s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 2146s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 2146s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 2146s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreemarker-java all 2.3.32-2 [1542 kB] 2146s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 2146s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjoptsimple-java all 5.0.4-4 [73.1 kB] 2146s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 2146s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 2146s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 2146s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 2146s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 2146s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 2147s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 2147s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 2147s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libbarclay-java all 5.0.0+dfsg-1 [108 kB] 2147s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.2 kB] 2147s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libciftools-java all 5.0.2-1 [2191 kB] 2148s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math-java all 2.2-8 [921 kB] 2148s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] 2148s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] 2148s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] 2148s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libguava-java all 32.0.1-1 [2692 kB] 2149s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libitext5-java all 5.5.13.3-4 [2691 kB] 2149s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-annotations-java all 2.14.0-1 [64.7 kB] 2149s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-core-java all 2.14.1-1 [432 kB] 2150s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-databind-java all 2.14.0-1 [1531 kB] 2150s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libactivation-java all 1.2.0-2 [84.7 kB] 2150s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-api-java all 2.3.1-1 [119 kB] 2150s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libargs4j-java all 2.33-2 [137 kB] 2150s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxen-java all 1.1.6-4 [214 kB] 2150s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libdom4j-java all 2.1.4-1 [310 kB] 2150s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 2150s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-utils-java all 3.3.4-1 [137 kB] 2150s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-cli-java all 1.6.0-1 [59.9 kB] 2150s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libaopalliance-java all 20070526-7 [8166 B] 2150s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 libguice-java all 4.2.3-2 [1434 kB] 2150s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-parent-java all 35-1 [5810 B] 2150s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-utils2-java all 3.4.2-1 [256 kB] 2150s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-provider-api-java all 3.5.3-1 [47.9 kB] 2150s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-resolver-java all 1.6.3-1 [544 kB] 2151s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-cipher-java all 2.0-1 [14.7 kB] 2151s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-classworlds-java all 2.7.0-1 [50.0 kB] 2151s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-component-annotations-java all 2.1.1-1 [6550 B] 2151s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-interpolation-java all 1.26-1 [76.8 kB] 2151s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-sec-dispatcher-java all 2.0-3 [28.1 kB] 2151s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4fakesync [8616 B] 2151s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libcdi-api-java all 1.2-3 [54.3 kB] 2151s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-inject-java all 0.3.4-2 [347 kB] 2151s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-plexus-java all 0.3.4-3 [181 kB] 2151s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven3-core-java all 3.8.7-2 [1565 kB] 2151s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-io-java all 3.0.0-4 [32.6 kB] 2151s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] 2151s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 2151s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-io-java all 3.3.1-2 [64.4 kB] 2151s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 2151s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 2151s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 2151s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 libxz-java all 1.9-1 [140 kB] 2151s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-archiver-java all 4.6.1-1 [185 kB] 2151s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsoup-java all 1.15.3-1 [407 kB] 2151s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-http-java all 3.5.3-1 [48.8 kB] 2151s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 libistack-commons-java all 3.0.6-5 [145 kB] 2151s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 libcodemodel-java all 2.6+jaxb2.3.0.1-10.1 [164 kB] 2151s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.8 kB] 2151s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 librngom-java all 2.3.0.1-10.1 [289 kB] 2151s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 libxsom-java all 2.3.0.1-10.1 [397 kB] 2151s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 libtxw2-java all 2.3.0.1-10.1 [133 kB] 2151s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 2151s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 libdtd-parser-java all 1.2-1 [64.9 kB] 2151s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 libstax-ex-java all 1.7.8-3 [40.9 kB] 2151s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] 2151s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastinfoset-java all 1.2.12-3 [343 kB] 2152s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-java all 2.3.0.1-10.1 [1967 kB] 2152s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr4-runtime-java all 4.9.2-2 [308 kB] 2152s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 libapfloat-java all 1.13.0-1 [698 kB] 2152s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-archiver-java all 3.6.0-1 [25.3 kB] 2152s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-jar-plugin-java all 3.3.0-2 [23.9 kB] 2152s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-text-java all 1.11.0-1 [215 kB] 2152s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] 2155s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 libjheaps-java all 0.14-2 [143 kB] 2155s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 2155s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces2-java all 2.12.2-1 [1430 kB] 2155s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgraphx-java all 2.1.0.7-3 [801 kB] 2155s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgrapht-java all 1.5.2-1 [1584 kB] 2156s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 libinchi1 arm64 1.03+dfsg-4 [448 kB] 2156s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-jni arm64 0.8+dfsg-7 [10.0 kB] 2156s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-exec-java all 1.3-2 [48.1 kB] 2156s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 libexec-maven-plugin-java all 3.1.0-2 [66.1 kB] 2156s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-incremental-java all 1.1-4 [9904 B] 2156s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 2156s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libxbean-reflect-java all 4.5-8 [132 kB] 2156s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-container-default-java all 2.1.1-1 [191 kB] 2156s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-compiler-java all 2.12.1-2 [98.4 kB] 2156s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 libasm-java all 9.6~us1-0ubuntu1 [386 kB] 2156s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 libqdox2-java all 2.0.3-1 [296 kB] 2156s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-languages-java all 1.1.1-2 [46.8 kB] 2156s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-compiler-plugin-java all 3.10.1-2 [58.5 kB] 2156s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 2156s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-java all 0.8+dfsg-7 [32.3 kB] 2156s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libnaga-java all 3.0+svn80-5 [43.5 kB] 2156s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libjmol-java all 14.32.83+dfsg-3 [8469 kB] 2157s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 libjson-simple-java all 2.3.0-1 [61.0 kB] 2157s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 libmsgpack-java all 0.9.6-1 [159 kB] 2157s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 libmmtf-java all 1.0.11-1 [184 kB] 2157s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libvecmath-java all 1.5.2-7 [96.9 kB] 2157s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libbiojava6-java all 6.1.0+dfsg-4 [5330 kB] 2158s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-collections4-java all 4.4-2 [670 kB] 2158s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math3-java all 3.6.1-3 [2016 kB] 2159s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 2159s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 2159s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 2159s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 2159s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 2159s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 2159s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 2159s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 2159s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 2159s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 2159s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 2160s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 2161s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 libla4j-java all 0.6.0-4 [224 kB] 2161s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libgatk-native-bindings-java all 1.0.0+dfsg-2 [8014 B] 2161s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libgkl-java all 0.8.11+dfsg-2 [24.8 kB] 2161s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libpicard-java all 3.1.1+dfsg-1 [1731 kB] 2162s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libyaml-snake-java all 1.33-2 [320 kB] 2162s Get:212 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 2162s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 java-wrappers all 0.4 [8662 B] 2162s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 picard-tools all 3.1.1+dfsg-1 [308 kB] 2162s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 drop-seq-tools all 2.5.4+dfsg-1 [570 kB] 2162s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 2162s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 2162s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 samtools arm64 1.19.2-1 [584 kB] 2167s Fetched 320 MB in 44s (7312 kB/s) 2167s Selecting previously unselected package libgdk-pixbuf2.0-common. 2168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 2168s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 2168s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 2168s Selecting previously unselected package libjpeg-turbo8:arm64. 2168s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 2168s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2168s Selecting previously unselected package libjpeg8:arm64. 2168s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 2168s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 2168s Selecting previously unselected package libdeflate0:arm64. 2168s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 2168s Unpacking libdeflate0:arm64 (1.19-1) ... 2168s Selecting previously unselected package libjbig0:arm64. 2168s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 2168s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 2168s Selecting previously unselected package liblerc4:arm64. 2168s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 2168s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2168s Selecting previously unselected package libsharpyuv0:arm64. 2169s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 2169s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 2169s Selecting previously unselected package libwebp7:arm64. 2169s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 2169s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 2169s Selecting previously unselected package libtiff6:arm64. 2169s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 2169s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2169s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 2169s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 2169s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 2170s Selecting previously unselected package gtk-update-icon-cache. 2170s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 2170s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 2170s Selecting previously unselected package hicolor-icon-theme. 2170s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 2170s Unpacking hicolor-icon-theme (0.17-2) ... 2171s Selecting previously unselected package humanity-icon-theme. 2171s Preparing 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2189s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 2189s Selecting previously unselected package libavahi-common3:arm64. 2189s Preparing to unpack .../018-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 2189s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 2189s Selecting previously unselected package libavahi-client3:arm64. 2189s Preparing to unpack .../019-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 2189s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 2190s Selecting previously unselected package libcups2:arm64. 2190s Preparing to unpack .../020-libcups2_2.4.6-0ubuntu3_arm64.deb ... 2190s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 2190s Selecting previously unselected package liblcms2-2:arm64. 2190s Preparing to unpack .../021-liblcms2-2_2.14-2_arm64.deb ... 2190s Unpacking liblcms2-2:arm64 (2.14-2) ... 2191s Selecting previously unselected package fonts-dejavu-mono. 2191s Preparing to unpack .../022-fonts-dejavu-mono_2.37-8_all.deb ... 2191s Unpacking fonts-dejavu-mono (2.37-8) ... 2192s Selecting previously unselected package fonts-dejavu-core. 2192s Preparing to unpack .../023-fonts-dejavu-core_2.37-8_all.deb ... 2192s Unpacking fonts-dejavu-core (2.37-8) ... 2192s Selecting previously unselected package fontconfig-config. 2193s Preparing to unpack .../024-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 2194s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 2194s Selecting previously unselected package libfontconfig1:arm64. 2194s Preparing to unpack .../025-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 2194s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2194s Selecting previously unselected package libasound2-data. 2194s Preparing to unpack .../026-libasound2-data_1.2.10-3build1_all.deb ... 2194s Unpacking libasound2-data (1.2.10-3build1) ... 2194s Selecting previously unselected package libasound2:arm64. 2194s Preparing to unpack .../027-libasound2_1.2.10-3build1_arm64.deb ... 2194s Unpacking libasound2:arm64 (1.2.10-3build1) ... 2195s Selecting previously unselected package libgraphite2-3:arm64. 2195s Preparing to unpack .../028-libgraphite2-3_1.3.14-2_arm64.deb ... 2195s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 2195s Selecting previously unselected package libharfbuzz0b:arm64. 2195s Preparing to unpack .../029-libharfbuzz0b_8.3.0-2_arm64.deb ... 2195s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 2195s Selecting previously unselected package libpcsclite1:arm64. 2195s Preparing to unpack .../030-libpcsclite1_2.0.0-1_arm64.deb ... 2195s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 2195s Selecting previously unselected package openjdk-21-jre-headless:arm64. 2195s Preparing to unpack .../031-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 2195s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 2201s Selecting previously unselected package default-jre-headless. 2201s Preparing to unpack .../032-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 2201s Unpacking default-jre-headless (2:1.21-75+exp1) ... 2201s Selecting previously unselected package ant. 2201s Preparing to unpack .../033-ant_1.10.14-1_all.deb ... 2201s Unpacking ant (1.10.14-1) ... 2202s Selecting previously unselected package ant-optional. 2202s Preparing to unpack .../034-ant-optional_1.10.14-1_all.deb ... 2202s Unpacking ant-optional (1.10.14-1) ... 2202s Selecting previously unselected package at-spi2-common. 2202s Preparing to unpack .../035-at-spi2-common_2.50.0-1_all.deb ... 2202s Unpacking at-spi2-common (2.50.0-1) ... 2202s Selecting previously unselected package libgtk2.0-common. 2202s Preparing to unpack .../036-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 2202s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 2202s Selecting previously unselected package libatk1.0-0:arm64. 2204s Preparing to unpack .../037-libatk1.0-0_2.50.0-1_arm64.deb ... 2204s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 2204s Selecting previously unselected package libpixman-1-0:arm64. 2204s Preparing to unpack .../038-libpixman-1-0_0.42.2-1_arm64.deb ... 2204s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 2204s Selecting previously unselected package libxcb-render0:arm64. 2204s Preparing to unpack .../039-libxcb-render0_1.15-1_arm64.deb ... 2204s Unpacking libxcb-render0:arm64 (1.15-1) ... 2204s Selecting previously unselected package libxcb-shm0:arm64. 2204s Preparing to unpack .../040-libxcb-shm0_1.15-1_arm64.deb ... 2204s Unpacking libxcb-shm0:arm64 (1.15-1) ... 2204s Selecting previously unselected package libxrender1:arm64. 2204s Preparing to unpack .../041-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 2204s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 2204s Selecting previously unselected package libcairo2:arm64. 2204s Preparing to unpack .../042-libcairo2_1.18.0-1_arm64.deb ... 2204s Unpacking libcairo2:arm64 (1.18.0-1) ... 2204s Selecting previously unselected package fontconfig. 2204s Preparing to unpack .../043-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 2204s Unpacking fontconfig (2.15.0-1ubuntu1) ... 2204s Selecting previously unselected package libthai-data. 2204s Preparing to unpack .../044-libthai-data_0.1.29-2_all.deb ... 2204s Unpacking libthai-data (0.1.29-2) ... 2204s Selecting previously unselected package libdatrie1:arm64. 2204s Preparing to unpack .../045-libdatrie1_0.2.13-3_arm64.deb ... 2204s Unpacking libdatrie1:arm64 (0.2.13-3) ... 2204s Selecting previously unselected package libthai0:arm64. 2204s Preparing to unpack .../046-libthai0_0.1.29-2_arm64.deb ... 2204s Unpacking libthai0:arm64 (0.1.29-2) ... 2204s Selecting previously unselected package libpango-1.0-0:arm64. 2204s Preparing to unpack .../047-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 2204s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2204s Selecting previously unselected package libpangoft2-1.0-0:arm64. 2204s Preparing to unpack .../048-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 2204s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2204s Selecting previously unselected package libpangocairo-1.0-0:arm64. 2204s Preparing to unpack .../049-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 2204s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2204s Selecting previously unselected package libxcomposite1:arm64. 2204s Preparing to unpack .../050-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 2204s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 2205s Selecting previously unselected package libxfixes3:arm64. 2205s Preparing to unpack .../051-libxfixes3_1%3a6.0.0-2_arm64.deb ... 2205s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 2205s Selecting previously unselected package libxcursor1:arm64. 2205s Preparing to unpack .../052-libxcursor1_1%3a1.2.1-1_arm64.deb ... 2205s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 2205s Selecting previously unselected package libxdamage1:arm64. 2205s Preparing to unpack .../053-libxdamage1_1%3a1.1.6-1_arm64.deb ... 2205s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 2205s Selecting previously unselected package libxi6:arm64. 2207s Preparing to unpack .../054-libxi6_2%3a1.8.1-1_arm64.deb ... 2207s Unpacking libxi6:arm64 (2:1.8.1-1) ... 2207s Selecting previously unselected package libxinerama1:arm64. 2207s Preparing to unpack .../055-libxinerama1_2%3a1.1.4-3_arm64.deb ... 2207s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 2207s Selecting previously unselected package libxrandr2:arm64. 2207s Preparing to unpack .../056-libxrandr2_2%3a1.5.2-2_arm64.deb ... 2207s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 2207s Selecting previously unselected package libgtk2.0-0:arm64. 2207s Preparing to unpack .../057-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 2207s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 2207s Selecting previously unselected package libglvnd0:arm64. 2207s Preparing to unpack .../058-libglvnd0_1.7.0-1_arm64.deb ... 2207s Unpacking libglvnd0:arm64 (1.7.0-1) ... 2208s Selecting previously unselected package libglapi-mesa:arm64. 2208s Preparing to unpack .../059-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 2208s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 2208s Selecting previously unselected package libx11-xcb1:arm64. 2208s Preparing to unpack .../060-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 2208s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 2208s Selecting previously unselected package libxcb-dri2-0:arm64. 2208s Preparing to unpack .../061-libxcb-dri2-0_1.15-1_arm64.deb ... 2208s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 2208s Selecting previously unselected package libxcb-dri3-0:arm64. 2208s Preparing to unpack .../062-libxcb-dri3-0_1.15-1_arm64.deb ... 2208s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 2208s Selecting previously unselected package libxcb-glx0:arm64. 2209s Preparing to unpack .../063-libxcb-glx0_1.15-1_arm64.deb ... 2209s Unpacking libxcb-glx0:arm64 (1.15-1) ... 2209s Selecting previously unselected package libxcb-present0:arm64. 2209s Preparing to unpack .../064-libxcb-present0_1.15-1_arm64.deb ... 2209s Unpacking libxcb-present0:arm64 (1.15-1) ... 2209s Selecting previously unselected package libxcb-randr0:arm64. 2209s Preparing to unpack .../065-libxcb-randr0_1.15-1_arm64.deb ... 2209s Unpacking libxcb-randr0:arm64 (1.15-1) ... 2209s Selecting previously unselected package libxcb-sync1:arm64. 2209s Preparing to unpack .../066-libxcb-sync1_1.15-1_arm64.deb ... 2209s Unpacking libxcb-sync1:arm64 (1.15-1) ... 2210s Selecting previously unselected package libxcb-xfixes0:arm64. 2210s Preparing to unpack .../067-libxcb-xfixes0_1.15-1_arm64.deb ... 2210s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 2210s Selecting previously unselected package libxshmfence1:arm64. 2210s Preparing to unpack .../068-libxshmfence1_1.3-1build4_arm64.deb ... 2210s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 2210s Selecting previously unselected package libxxf86vm1:arm64. 2210s Preparing to unpack .../069-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 2210s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 2210s Selecting previously unselected package libvulkan1:arm64. 2210s Preparing to unpack .../070-libvulkan1_1.3.275.0-1_arm64.deb ... 2210s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 2215s Selecting previously unselected package libdrm-amdgpu1:arm64. 2215s Preparing to unpack .../071-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 2215s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 2215s Selecting previously unselected package libdrm-nouveau2:arm64. 2215s Preparing to unpack .../072-libdrm-nouveau2_2.4.120-2_arm64.deb ... 2215s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 2215s Selecting previously unselected package libdrm-radeon1:arm64. 2215s Preparing to unpack .../073-libdrm-radeon1_2.4.120-2_arm64.deb ... 2215s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 2215s Selecting previously unselected package libllvm17:arm64. 2215s Preparing to unpack .../074-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 2215s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 2215s Selecting previously unselected package libgl1-mesa-dri:arm64. 2215s Preparing to unpack .../075-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 2216s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 2217s Selecting previously unselected package libglx-mesa0:arm64. 2217s Preparing to unpack .../076-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 2217s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 2218s Selecting previously unselected package libglx0:arm64. 2218s Preparing to unpack .../077-libglx0_1.7.0-1_arm64.deb ... 2218s Unpacking libglx0:arm64 (1.7.0-1) ... 2218s Selecting previously unselected package libgl1:arm64. 2218s Preparing to unpack .../078-libgl1_1.7.0-1_arm64.deb ... 2218s Unpacking libgl1:arm64 (1.7.0-1) ... 2218s Selecting previously unselected package libgif7:arm64. 2218s Preparing to unpack .../079-libgif7_5.2.1-2.5_arm64.deb ... 2218s Unpacking libgif7:arm64 (5.2.1-2.5) ... 2218s Selecting previously unselected package x11-common. 2218s Preparing to unpack .../080-x11-common_1%3a7.7+23ubuntu2_all.deb ... 2218s Unpacking x11-common (1:7.7+23ubuntu2) ... 2218s Selecting previously unselected package libxtst6:arm64. 2218s Preparing to unpack .../081-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 2218s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 2218s Selecting previously unselected package openjdk-21-jre:arm64. 2218s Preparing to unpack .../082-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 2218s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 2219s Selecting previously unselected package default-jre. 2219s Preparing to unpack .../083-default-jre_2%3a1.21-75+exp1_arm64.deb ... 2219s Unpacking default-jre (2:1.21-75+exp1) ... 2219s Selecting previously unselected package drop-seq-testdata. 2219s Preparing to unpack .../084-drop-seq-testdata_2.5.4+dfsg-1_all.deb ... 2219s Unpacking drop-seq-testdata (2.5.4+dfsg-1) ... 2224s Selecting previously unselected package libapache-pom-java. 2224s Preparing to unpack .../085-libapache-pom-java_29-2_all.deb ... 2224s Unpacking libapache-pom-java (29-2) ... 2225s Selecting previously unselected package libcommons-parent-java. 2225s Preparing to unpack .../086-libcommons-parent-java_56-1_all.deb ... 2225s Unpacking libcommons-parent-java (56-1) ... 2225s Selecting previously unselected package libcommons-lang3-java. 2225s Preparing to unpack .../087-libcommons-lang3-java_3.14.0-1_all.deb ... 2225s Unpacking libcommons-lang3-java (3.14.0-1) ... 2225s Selecting previously unselected package libfreemarker-java. 2226s Preparing to unpack .../088-libfreemarker-java_2.3.32-2_all.deb ... 2226s Unpacking libfreemarker-java (2.3.32-2) ... 2226s Selecting previously unselected package libgoogle-gson-java. 2226s Preparing to unpack .../089-libgoogle-gson-java_2.10.1-1_all.deb ... 2226s Unpacking libgoogle-gson-java (2.10.1-1) ... 2226s Selecting previously unselected package libjoptsimple-java. 2226s Preparing to unpack .../090-libjoptsimple-java_5.0.4-4_all.deb ... 2226s Unpacking libjoptsimple-java (5.0.4-4) ... 2226s Selecting previously unselected package libcommons-codec-java. 2226s Preparing to unpack .../091-libcommons-codec-java_1.16.0-1_all.deb ... 2226s Unpacking libcommons-codec-java (1.16.0-1) ... 2226s Selecting previously unselected package libcommons-logging-java. 2226s Preparing to unpack .../092-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 2226s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 2226s Selecting previously unselected package libhttpcore-java. 2226s Preparing to unpack .../093-libhttpcore-java_4.4.16-1_all.deb ... 2226s Unpacking libhttpcore-java (4.4.16-1) ... 2226s Selecting previously unselected package libhttpclient-java. 2226s Preparing to unpack .../094-libhttpclient-java_4.5.14-1_all.deb ... 2226s Unpacking libhttpclient-java (4.5.14-1) ... 2226s Selecting previously unselected package liblightcouch-java. 2226s Preparing to unpack .../095-liblightcouch-java_0.2.0-1_all.deb ... 2226s Unpacking liblightcouch-java (0.2.0-1) ... 2227s Selecting previously unselected package libmongodb-java. 2227s Preparing to unpack .../096-libmongodb-java_3.6.3-2_all.deb ... 2227s Unpacking libmongodb-java (3.6.3-2) ... 2227s Selecting previously unselected package libslf4j-java. 2227s Preparing to unpack .../097-libslf4j-java_1.7.32-1_all.deb ... 2227s Unpacking libslf4j-java (1.7.32-1) ... 2227s Selecting previously unselected package liblog4j2-java. 2227s Preparing to unpack .../098-liblog4j2-java_2.19.0-2_all.deb ... 2227s Unpacking liblog4j2-java (2.19.0-2) ... 2227s Selecting previously unselected package libbarclay-java. 2228s Preparing to unpack .../099-libbarclay-java_5.0.0+dfsg-1_all.deb ... 2228s Unpacking libbarclay-java (5.0.0+dfsg-1) ... 2228s Selecting previously unselected package libgeronimo-annotation-1.3-spec-java. 2228s Preparing to unpack .../100-libgeronimo-annotation-1.3-spec-java_1.3-1_all.deb ... 2228s Unpacking libgeronimo-annotation-1.3-spec-java (1.3-1) ... 2228s Selecting previously unselected package libciftools-java. 2228s Preparing to unpack .../101-libciftools-java_5.0.2-1_all.deb ... 2228s Unpacking libciftools-java (5.0.2-1) ... 2228s Selecting previously unselected package libcommons-math-java. 2228s Preparing to unpack .../102-libcommons-math-java_2.2-8_all.deb ... 2228s Unpacking libcommons-math-java (2.2-8) ... 2228s Selecting previously unselected package libatinject-jsr330-api-java. 2228s Preparing to unpack .../103-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... 2228s Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... 2228s Selecting previously unselected package liberror-prone-java. 2228s Preparing to unpack .../104-liberror-prone-java_2.18.0-1_all.deb ... 2228s Unpacking liberror-prone-java (2.18.0-1) ... 2228s Selecting previously unselected package libjsr305-java. 2228s Preparing to unpack .../105-libjsr305-java_0.1~+svn49-11_all.deb ... 2228s Unpacking libjsr305-java (0.1~+svn49-11) ... 2229s Selecting previously unselected package libguava-java. 2229s Preparing to unpack .../106-libguava-java_32.0.1-1_all.deb ... 2229s Unpacking libguava-java (32.0.1-1) ... 2229s Selecting previously unselected package libitext5-java. 2229s Preparing to unpack .../107-libitext5-java_5.5.13.3-4_all.deb ... 2229s Unpacking libitext5-java (5.5.13.3-4) ... 2229s Selecting previously unselected package libjackson2-annotations-java. 2229s Preparing to unpack .../108-libjackson2-annotations-java_2.14.0-1_all.deb ... 2229s Unpacking libjackson2-annotations-java (2.14.0-1) ... 2229s Selecting previously unselected package libjackson2-core-java. 2229s Preparing to unpack .../109-libjackson2-core-java_2.14.1-1_all.deb ... 2229s Unpacking libjackson2-core-java (2.14.1-1) ... 2229s Selecting previously unselected package libjackson2-databind-java. 2229s Preparing to unpack .../110-libjackson2-databind-java_2.14.0-1_all.deb ... 2229s Unpacking libjackson2-databind-java (2.14.0-1) ... 2229s Selecting previously unselected package libactivation-java. 2230s Preparing to unpack .../111-libactivation-java_1.2.0-2_all.deb ... 2230s Unpacking libactivation-java 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unpack .../117-libmaven-shared-utils-java_3.3.4-1_all.deb ... 2230s Unpacking libmaven-shared-utils-java (3.3.4-1) ... 2230s Selecting previously unselected package libcommons-cli-java. 2231s Preparing to unpack .../118-libcommons-cli-java_1.6.0-1_all.deb ... 2231s Unpacking libcommons-cli-java (1.6.0-1) ... 2231s Selecting previously unselected package libaopalliance-java. 2231s Preparing to unpack .../119-libaopalliance-java_20070526-7_all.deb ... 2231s Unpacking libaopalliance-java (20070526-7) ... 2231s Selecting previously unselected package libguice-java. 2231s Preparing to unpack .../120-libguice-java_4.2.3-2_all.deb ... 2231s Unpacking libguice-java (4.2.3-2) ... 2231s Selecting previously unselected package libmaven-parent-java. 2231s Preparing to unpack .../121-libmaven-parent-java_35-1_all.deb ... 2231s Unpacking libmaven-parent-java (35-1) ... 2231s Selecting previously unselected package libplexus-utils2-java. 2231s Preparing to unpack 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libplexus-component-annotations-java. 2232s Preparing to unpack .../127-libplexus-component-annotations-java_2.1.1-1_all.deb ... 2232s Unpacking libplexus-component-annotations-java (2.1.1-1) ... 2232s Selecting previously unselected package libplexus-interpolation-java. 2232s Preparing to unpack .../128-libplexus-interpolation-java_1.26-1_all.deb ... 2232s Unpacking libplexus-interpolation-java (1.26-1) ... 2232s Selecting previously unselected package libplexus-sec-dispatcher-java. 2233s Preparing to unpack .../129-libplexus-sec-dispatcher-java_2.0-3_all.deb ... 2233s Unpacking libplexus-sec-dispatcher-java (2.0-3) ... 2233s Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java. 2233s Preparing to unpack .../130-libgeronimo-interceptor-3.0-spec-java_1.0.1-4fakesync_all.deb ... 2233s Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 2233s Selecting previously unselected package libcdi-api-java. 2233s Preparing to unpack .../131-libcdi-api-java_1.2-3_all.deb ... 2233s Unpacking libcdi-api-java (1.2-3) ... 2233s Selecting previously unselected package libsisu-inject-java. 2233s Preparing to unpack .../132-libsisu-inject-java_0.3.4-2_all.deb ... 2233s Unpacking libsisu-inject-java (0.3.4-2) ... 2233s Selecting previously unselected package libsisu-plexus-java. 2233s Preparing to unpack .../133-libsisu-plexus-java_0.3.4-3_all.deb ... 2233s Unpacking libsisu-plexus-java (0.3.4-3) ... 2233s Selecting previously unselected package libmaven3-core-java. 2233s Preparing to unpack .../134-libmaven3-core-java_3.8.7-2_all.deb ... 2233s Unpacking libmaven3-core-java (3.8.7-2) ... 2234s Selecting previously unselected package libmaven-shared-io-java. 2234s Preparing to unpack .../135-libmaven-shared-io-java_3.0.0-4_all.deb ... 2234s Unpacking libmaven-shared-io-java (3.0.0-4) ... 2234s Selecting previously unselected package libmaven-file-management-java. 2234s Preparing to unpack .../136-libmaven-file-management-java_3.0.0-1_all.deb ... 2234s Unpacking libmaven-file-management-java (3.0.0-1) ... 2234s Selecting previously unselected package libcommons-compress-java. 2234s Preparing to unpack .../137-libcommons-compress-java_1.25.0-1_all.deb ... 2234s Unpacking libcommons-compress-java (1.25.0-1) ... 2234s Selecting previously unselected package libplexus-io-java. 2234s Preparing to unpack .../138-libplexus-io-java_3.3.1-2_all.deb ... 2234s Unpacking libplexus-io-java (3.3.1-2) ... 2234s Selecting previously unselected package libsnappy1v5:arm64. 2234s Preparing to unpack .../139-libsnappy1v5_1.1.10-1_arm64.deb ... 2234s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 2235s Selecting previously unselected package libsnappy-jni. 2235s Preparing to unpack .../140-libsnappy-jni_1.1.10.5-1_arm64.deb ... 2235s Unpacking libsnappy-jni (1.1.10.5-1) ... 2235s Selecting previously unselected package libsnappy-java. 2235s Preparing to unpack .../141-libsnappy-java_1.1.10.5-1_all.deb ... 2235s Unpacking libsnappy-java (1.1.10.5-1) ... 2235s Selecting previously unselected package libxz-java. 2235s Preparing to unpack .../142-libxz-java_1.9-1_all.deb ... 2235s Unpacking libxz-java (1.9-1) ... 2235s Selecting previously unselected package libplexus-archiver-java. 2235s Preparing to unpack .../143-libplexus-archiver-java_4.6.1-1_all.deb ... 2235s Unpacking libplexus-archiver-java (4.6.1-1) ... 2236s Selecting previously unselected package libjsoup-java. 2236s Preparing to unpack .../144-libjsoup-java_1.15.3-1_all.deb ... 2236s Unpacking libjsoup-java (1.15.3-1) ... 2236s Selecting previously unselected package libwagon-http-java. 2236s Preparing to unpack .../145-libwagon-http-java_3.5.3-1_all.deb ... 2236s Unpacking libwagon-http-java (3.5.3-1) ... 2236s Selecting previously unselected package libistack-commons-java. 2236s Preparing to unpack .../146-libistack-commons-java_3.0.6-5_all.deb ... 2236s Unpacking libistack-commons-java (3.0.6-5) ... 2236s Selecting previously unselected package libcodemodel-java. 2236s Preparing to unpack .../147-libcodemodel-java_2.6+jaxb2.3.0.1-10.1_all.deb ... 2236s Unpacking libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 2237s Selecting previously unselected package librelaxng-datatype-java. 2237s Preparing to unpack .../148-librelaxng-datatype-java_1.0+ds1-3.1_all.deb ... 2237s Unpacking librelaxng-datatype-java (1.0+ds1-3.1) ... 2237s Selecting previously unselected package librngom-java. 2237s Preparing to unpack .../149-librngom-java_2.3.0.1-10.1_all.deb ... 2237s Unpacking librngom-java (2.3.0.1-10.1) ... 2237s Selecting previously unselected package libxsom-java. 2237s Preparing to unpack .../150-libxsom-java_2.3.0.1-10.1_all.deb ... 2237s Unpacking libxsom-java (2.3.0.1-10.1) ... 2237s Selecting previously unselected package libtxw2-java. 2237s Preparing to unpack .../151-libtxw2-java_2.3.0.1-10.1_all.deb ... 2237s Unpacking libtxw2-java (2.3.0.1-10.1) ... 2237s Selecting previously unselected package libxml-commons-resolver1.1-java. 2237s Preparing to unpack .../152-libxml-commons-resolver1.1-java_1.2-11_all.deb ... 2237s Unpacking libxml-commons-resolver1.1-java (1.2-11) ... 2237s Selecting previously unselected package libdtd-parser-java. 2240s Preparing to unpack .../153-libdtd-parser-java_1.2-1_all.deb ... 2240s Unpacking libdtd-parser-java (1.2-1) ... 2240s Selecting previously unselected package libstax-ex-java. 2240s Preparing to unpack .../154-libstax-ex-java_1.7.8-3_all.deb ... 2240s Unpacking libstax-ex-java (1.7.8-3) ... 2240s Selecting previously unselected package libstreambuffer-java. 2240s Preparing to unpack .../155-libstreambuffer-java_1.5.4-1.1_all.deb ... 2240s Unpacking libstreambuffer-java (1.5.4-1.1) ... 2240s Selecting previously unselected package libfastinfoset-java. 2240s Preparing to unpack .../156-libfastinfoset-java_1.2.12-3_all.deb ... 2240s Unpacking libfastinfoset-java (1.2.12-3) ... 2240s Selecting previously unselected package libjaxb-java. 2240s Preparing to unpack .../157-libjaxb-java_2.3.0.1-10.1_all.deb ... 2240s Unpacking libjaxb-java (2.3.0.1-10.1) ... 2240s Selecting previously unselected package libantlr4-runtime-java. 2240s Preparing to unpack .../158-libantlr4-runtime-java_4.9.2-2_all.deb ... 2240s Unpacking libantlr4-runtime-java (4.9.2-2) ... 2240s Selecting previously unselected package libapfloat-java. 2240s Preparing to unpack .../159-libapfloat-java_1.13.0-1_all.deb ... 2240s Unpacking libapfloat-java (1.13.0-1) ... 2240s Selecting previously unselected package libmaven-archiver-java. 2240s Preparing to unpack .../160-libmaven-archiver-java_3.6.0-1_all.deb ... 2240s Unpacking libmaven-archiver-java (3.6.0-1) ... 2240s Selecting previously unselected package libmaven-jar-plugin-java. 2240s Preparing to unpack .../161-libmaven-jar-plugin-java_3.3.0-2_all.deb ... 2240s Unpacking libmaven-jar-plugin-java (3.3.0-2) ... 2240s Selecting previously unselected package libcommons-text-java. 2240s Preparing to unpack .../162-libcommons-text-java_1.11.0-1_all.deb ... 2240s Unpacking libcommons-text-java (1.11.0-1) ... 2240s Selecting previously unselected package libfastutil-java. 2240s Preparing to unpack .../163-libfastutil-java_8.5.12+dfsg-1_all.deb ... 2241s Unpacking libfastutil-java (8.5.12+dfsg-1) ... 2241s Selecting previously unselected package libjheaps-java. 2241s Preparing to unpack .../164-libjheaps-java_0.14-2_all.deb ... 2241s Unpacking libjheaps-java (0.14-2) ... 2241s Selecting previously unselected package libxml-commons-external-java. 2241s Preparing to unpack .../165-libxml-commons-external-java_1.4.01-6_all.deb ... 2241s Unpacking libxml-commons-external-java (1.4.01-6) ... 2242s Selecting previously unselected package libxerces2-java. 2242s Preparing to unpack .../166-libxerces2-java_2.12.2-1_all.deb ... 2242s Unpacking libxerces2-java (2.12.2-1) ... 2242s Selecting previously unselected package libjgraphx-java. 2242s Preparing to unpack .../167-libjgraphx-java_2.1.0.7-3_all.deb ... 2242s Unpacking libjgraphx-java (2.1.0.7-3) ... 2242s Selecting previously unselected package libjgrapht-java. 2242s Preparing to unpack .../168-libjgrapht-java_1.5.2-1_all.deb ... 2242s Unpacking libjgrapht-java (1.5.2-1) ... 2242s Selecting previously unselected package libinchi1. 2242s Preparing to unpack .../169-libinchi1_1.03+dfsg-4_arm64.deb ... 2242s Unpacking libinchi1 (1.03+dfsg-4) ... 2242s Selecting previously unselected package libjni-inchi-jni. 2243s Preparing to unpack .../170-libjni-inchi-jni_0.8+dfsg-7_arm64.deb ... 2243s Unpacking libjni-inchi-jni (0.8+dfsg-7) ... 2244s Selecting previously unselected package libcommons-exec-java. 2244s Preparing to unpack .../171-libcommons-exec-java_1.3-2_all.deb ... 2244s Unpacking libcommons-exec-java (1.3-2) ... 2244s Selecting previously unselected package libexec-maven-plugin-java. 2244s Preparing to unpack .../172-libexec-maven-plugin-java_3.1.0-2_all.deb ... 2244s Unpacking libexec-maven-plugin-java (3.1.0-2) ... 2244s Selecting previously unselected package libmaven-shared-incremental-java. 2244s Preparing to unpack .../173-libmaven-shared-incremental-java_1.1-4_all.deb ... 2244s Unpacking libmaven-shared-incremental-java (1.1-4) ... 2244s Selecting previously unselected package libcommons-lang-java. 2244s Preparing to unpack .../174-libcommons-lang-java_2.6-10_all.deb ... 2244s Unpacking libcommons-lang-java (2.6-10) ... 2244s Selecting previously unselected package libxbean-reflect-java. 2244s Preparing to unpack .../175-libxbean-reflect-java_4.5-8_all.deb ... 2244s Unpacking libxbean-reflect-java (4.5-8) ... 2244s Selecting previously unselected package libplexus-container-default-java. 2244s Preparing to unpack .../176-libplexus-container-default-java_2.1.1-1_all.deb ... 2244s Unpacking libplexus-container-default-java (2.1.1-1) ... 2244s Selecting previously unselected package libplexus-compiler-java. 2244s Preparing to unpack .../177-libplexus-compiler-java_2.12.1-2_all.deb ... 2244s Unpacking libplexus-compiler-java (2.12.1-2) ... 2244s Selecting previously unselected package libasm-java. 2244s Preparing to unpack .../178-libasm-java_9.6~us1-0ubuntu1_all.deb ... 2244s Unpacking libasm-java (9.6~us1-0ubuntu1) ... 2244s Selecting previously unselected package libqdox2-java. 2244s Preparing to unpack .../179-libqdox2-java_2.0.3-1_all.deb ... 2244s Unpacking libqdox2-java (2.0.3-1) ... 2244s Selecting previously unselected package libplexus-languages-java. 2244s Preparing to unpack .../180-libplexus-languages-java_1.1.1-2_all.deb ... 2244s Unpacking libplexus-languages-java (1.1.1-2) ... 2244s Selecting previously unselected package libmaven-compiler-plugin-java. 2244s Preparing to unpack .../181-libmaven-compiler-plugin-java_3.10.1-2_all.deb ... 2244s Unpacking libmaven-compiler-plugin-java (3.10.1-2) ... 2245s Selecting previously unselected package liblog4j1.2-java. 2245s Preparing to unpack .../182-liblog4j1.2-java_1.2.17-11_all.deb ... 2245s Unpacking liblog4j1.2-java (1.2.17-11) ... 2245s Selecting previously unselected package libjni-inchi-java. 2245s Preparing to unpack .../183-libjni-inchi-java_0.8+dfsg-7_all.deb ... 2245s Unpacking libjni-inchi-java (0.8+dfsg-7) ... 2245s Selecting previously unselected package libnaga-java. 2245s Preparing to unpack .../184-libnaga-java_3.0+svn80-5_all.deb ... 2245s Unpacking libnaga-java (3.0+svn80-5) ... 2245s Selecting previously unselected package libjmol-java. 2246s Preparing to unpack .../185-libjmol-java_14.32.83+dfsg-3_all.deb ... 2246s Unpacking libjmol-java (14.32.83+dfsg-3) ... 2246s Selecting previously unselected package libjson-simple-java. 2246s Preparing to unpack .../186-libjson-simple-java_2.3.0-1_all.deb ... 2246s Unpacking libjson-simple-java (2.3.0-1) ... 2246s Selecting previously unselected package libmsgpack-java. 2246s Preparing to unpack .../187-libmsgpack-java_0.9.6-1_all.deb ... 2246s Unpacking libmsgpack-java (0.9.6-1) ... 2246s Selecting previously unselected package libmmtf-java. 2246s Preparing to unpack .../188-libmmtf-java_1.0.11-1_all.deb ... 2247s Unpacking libmmtf-java (1.0.11-1) ... 2247s Selecting previously unselected package libvecmath-java. 2247s Preparing to unpack .../189-libvecmath-java_1.5.2-7_all.deb ... 2247s Unpacking libvecmath-java (1.5.2-7) ... 2247s Selecting previously unselected package libbiojava6-java. 2247s Preparing to unpack .../190-libbiojava6-java_6.1.0+dfsg-4_all.deb ... 2247s Unpacking libbiojava6-java (6.1.0+dfsg-4) ... 2247s Selecting previously unselected package libcommons-collections4-java. 2247s Preparing to unpack .../191-libcommons-collections4-java_4.4-2_all.deb ... 2247s Unpacking libcommons-collections4-java (4.4-2) ... 2247s Selecting previously unselected package libcommons-math3-java. 2247s Preparing to unpack .../192-libcommons-math3-java_3.6.1-3_all.deb ... 2247s Unpacking libcommons-math3-java (3.6.1-3) ... 2248s Selecting previously unselected package libcommons-jexl2-java. 2248s Preparing to unpack .../193-libcommons-jexl2-java_2.1.1-6_all.deb ... 2248s Unpacking libcommons-jexl2-java (2.1.1-6) ... 2248s Selecting previously unselected package libmjson-java. 2248s Preparing to unpack .../194-libmjson-java_1.4.0-3_all.deb ... 2248s Unpacking libmjson-java (1.4.0-3) ... 2248s Selecting previously unselected package libmbedcrypto7:arm64. 2248s Preparing to unpack .../195-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 2248s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 2249s Selecting previously unselected package libmbedx509-1:arm64. 2249s Preparing to unpack .../196-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 2249s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 2249s Selecting previously unselected package libmbedtls14:arm64. 2249s Preparing to unpack .../197-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 2249s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 2249s Selecting previously unselected package ncbi-vdb-data. 2249s Preparing to unpack .../198-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 2249s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 2249s Selecting previously unselected package libncbi-vdb3:arm64. 2249s Preparing to unpack .../199-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 2249s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 2251s Selecting previously unselected package libncbi-ngs3:arm64. 2251s Preparing to unpack .../200-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2251s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 2251s Selecting previously unselected package libngs-jni:arm64. 2251s Preparing to unpack .../201-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2251s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 2251s Selecting previously unselected package libngs-java:arm64. 2251s Preparing to unpack .../202-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2251s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 2251s Selecting previously unselected package librhino-java. 2251s Preparing to unpack .../203-librhino-java_1.7.14-2.1_all.deb ... 2251s Unpacking librhino-java (1.7.14-2.1) ... 2251s Selecting previously unselected package libhtsjdk-java. 2251s Preparing to unpack .../204-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 2251s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 2251s Selecting previously unselected package libla4j-java. 2251s Preparing to unpack .../205-libla4j-java_0.6.0-4_all.deb ... 2251s Unpacking libla4j-java (0.6.0-4) ... 2251s Selecting previously unselected package libgatk-native-bindings-java. 2251s Preparing to unpack .../206-libgatk-native-bindings-java_1.0.0+dfsg-2_all.deb ... 2251s Unpacking libgatk-native-bindings-java (1.0.0+dfsg-2) ... 2251s Selecting previously unselected package libgkl-java. 2251s Preparing to unpack .../207-libgkl-java_0.8.11+dfsg-2_all.deb ... 2251s Unpacking libgkl-java (0.8.11+dfsg-2) ... 2252s Selecting previously unselected package libpicard-java. 2252s Preparing to unpack .../208-libpicard-java_3.1.1+dfsg-1_all.deb ... 2252s Unpacking libpicard-java (3.1.1+dfsg-1) ... 2252s Selecting previously unselected package libyaml-snake-java. 2252s Preparing to unpack .../209-libyaml-snake-java_1.33-2_all.deb ... 2252s Unpacking libyaml-snake-java (1.33-2) ... 2253s Selecting previously unselected package unzip. 2253s Preparing to unpack .../210-unzip_6.0-28ubuntu3_arm64.deb ... 2253s Unpacking unzip (6.0-28ubuntu3) ... 2255s Selecting previously unselected package java-wrappers. 2255s Preparing to unpack .../211-java-wrappers_0.4_all.deb ... 2255s Unpacking java-wrappers (0.4) ... 2255s Selecting previously unselected package picard-tools. 2255s Preparing to unpack .../212-picard-tools_3.1.1+dfsg-1_all.deb ... 2255s Unpacking picard-tools (3.1.1+dfsg-1) ... 2255s Selecting previously unselected package drop-seq-tools. 2255s Preparing to unpack .../213-drop-seq-tools_2.5.4+dfsg-1_all.deb ... 2255s Unpacking drop-seq-tools (2.5.4+dfsg-1) ... 2255s Selecting previously unselected package libhtscodecs2:arm64. 2255s Preparing to unpack .../214-libhtscodecs2_1.6.0-1_arm64.deb ... 2255s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 2255s Selecting previously unselected package libhts3:arm64. 2255s Preparing to unpack .../215-libhts3_1.18+ds-1_arm64.deb ... 2255s Unpacking libhts3:arm64 (1.18+ds-1) ... 2255s Selecting previously unselected package samtools. 2255s Preparing to unpack .../216-samtools_1.19.2-1_arm64.deb ... 2255s Unpacking samtools (1.19.2-1) ... 2255s Selecting previously unselected package autopkgtest-satdep. 2255s Preparing to unpack .../217-3-autopkgtest-satdep.deb ... 2255s Unpacking autopkgtest-satdep (0) ... 2255s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 2255s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 2255s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 2255s Setting up liblcms2-2:arm64 (2.14-2) ... 2255s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 2255s Setting up libfastutil-java (8.5.12+dfsg-1) ... 2255s Setting up libjackson2-annotations-java (2.14.0-1) ... 2255s Setting up libdtd-parser-java (1.2-1) ... 2255s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 2255s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 2255s Setting up libslf4j-java (1.7.32-1) ... 2255s Setting up libplexus-utils2-java (3.4.2-1) ... 2255s Setting up libplexus-classworlds-java (2.7.0-1) ... 2255s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 2255s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 2255s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 2255s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2255s Setting up libjsr305-java (0.1~+svn49-11) ... 2255s Setting up hicolor-icon-theme (0.17-2) ... 2255s Setting up libxi6:arm64 (2:1.8.1-1) ... 2255s Setting up libgatk-native-bindings-java (1.0.0+dfsg-2) ... 2255s Setting up java-common (0.75+exp1) ... 2255s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 2255s Setting up libdatrie1:arm64 (0.2.13-3) ... 2255s Setting up libqdox2-java (2.0.3-1) ... 2255s Setting up libla4j-java (0.6.0-4) ... 2255s Setting up libaopalliance-java (20070526-7) ... 2255s Setting up libcommons-cli-java (1.6.0-1) ... 2255s Setting up libjheaps-java (0.14-2) ... 2255s Setting up libcommons-exec-java (1.3-2) ... 2255s Setting up libvecmath-java (1.5.2-7) ... 2255s Setting up libxcb-render0:arm64 (1.15-1) ... 2255s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 2255s Setting up libglvnd0:arm64 (1.7.0-1) ... 2255s Setting up libgoogle-gson-java (2.10.1-1) ... 2255s Setting up libmjson-java (1.4.0-3) ... 2255s Setting up libxcb-glx0:arm64 (1.15-1) ... 2255s Setting up unzip (6.0-28ubuntu3) ... 2255s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 2255s Setting up libasm-java (9.6~us1-0ubuntu1) ... 2255s Setting up x11-common (1:7.7+23ubuntu2) ... 2261s Setting up libdeflate0:arm64 (1.19-1) ... 2261s Setting up liblog4j1.2-java (1.2.17-11) ... 2261s Setting up libplexus-component-annotations-java (2.1.1-1) ... 2261s Setting up libantlr4-runtime-java (4.9.2-2) ... 2261s Setting up libxcb-shm0:arm64 (1.15-1) ... 2261s Setting up libjson-simple-java (2.3.0-1) ... 2261s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 2261s Setting up drop-seq-testdata (2.5.4+dfsg-1) ... 2261s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 2261s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 2261s Setting up libexec-maven-plugin-java (3.1.0-2) ... 2261s Setting up libxcb-present0:arm64 (1.15-1) ... 2261s Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... 2261s Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 2261s Setting up libasound2-data (1.2.10-3build1) ... 2261s Setting up librhino-java (1.7.14-2.1) ... 2261s Setting up libjaxen-java (1.1.6-4) ... 2261s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 2261s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 2261s Setting up libxcb-sync1:arm64 (1.15-1) ... 2261s Setting up libapache-pom-java (29-2) ... 2261s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 2261s Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... 2261s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 2261s Setting up libplexus-interpolation-java (1.26-1) ... 2261s Setting up fonts-dejavu-mono (2.37-8) ... 2261s Setting up libitext5-java (5.5.13.3-4) ... 2261s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 2261s Setting up libxz-java (1.9-1) ... 2261s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 2261s Setting up fonts-dejavu-core (2.37-8) ... 2261s Setting up libpcsclite1:arm64 (2.0.0-1) ... 2261s Setting up libmongodb-java (3.6.3-2) ... 2261s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2261s Setting up libactivation-java (1.2.0-2) ... 2261s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 2261s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 2261s Setting up libapfloat-java (1.13.0-1) ... 2261s Setting up libwebp7:arm64 (1.3.2-0.4) ... 2261s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 2261s Setting up libgif7:arm64 (5.2.1-2.5) ... 2261s Setting up libfreemarker-java (2.3.32-2) ... 2261s Setting up libxshmfence1:arm64 (1.3-1build4) ... 2261s Setting up libjsoup-java (1.15.3-1) ... 2261s Setting up at-spi2-common (2.50.0-1) ... 2261s Setting up libcommons-math-java (2.2-8) ... 2261s Setting up libxcb-randr0:arm64 (1.15-1) ... 2261s Setting up libxml-commons-external-java (1.4.01-6) ... 2261s Setting up libxbean-reflect-java (4.5-8) ... 2261s Setting up libasound2:arm64 (1.2.10-3build1) ... 2261s Setting up libjackson2-core-java (2.14.1-1) ... 2261s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 2261s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 2261s Setting up libthai-data (0.1.29-2) ... 2261s Setting up libcommons-math3-java (3.6.1-3) ... 2261s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 2261s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 2261s Setting up libhttpcore-java (4.4.16-1) ... 2261s Setting up libjoptsimple-java (5.0.4-4) ... 2261s Setting up ca-certificates-java (20240118) ... 2261s No JRE found. Skipping Java certificates setup. 2261s Setting up libxerces2-java (2.12.2-1) ... 2261s Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... 2261s Setting up libyaml-snake-java (1.33-2) ... 2261s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 2261s Setting up libcdi-api-java (1.2-3) ... 2261s Setting up libsnappy-jni (1.1.10.5-1) ... 2261s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 2261s Setting up libargs4j-java (2.33-2) ... 2261s Setting up libinchi1 (1.03+dfsg-4) ... 2261s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 2261s Setting up libnaga-java (3.0+svn80-5) ... 2261s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 2261s Setting up libdom4j-java (2.1.4-1) ... 2261s Setting up libjaxb-api-java (2.3.1-1) ... 2261s Setting up libwagon-provider-api-java (3.5.3-1) ... 2261s Setting up libhts3:arm64 (1.18+ds-1) ... 2261s Setting up java-wrappers (0.4) ... 2261s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 2261s Setting up libplexus-languages-java (1.1.1-2) ... 2261s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 2261s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 2261s Setting up libstax-ex-java (1.7.8-3) ... 2261s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 2261s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 2261s Setting up libmaven-parent-java (35-1) ... 2261s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 2261s Setting up libcommons-parent-java (56-1) ... 2261s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 2261s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 2261s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 2261s Setting up libsisu-inject-java (0.3.4-2) ... 2261s Setting up libciftools-java (5.0.2-1) ... 2261s Setting up libcommons-lang-java (2.6-10) ... 2261s Setting up libjackson2-databind-java (2.14.0-1) ... 2261s Setting up libplexus-cipher-java (2.0-1) ... 2261s Setting up samtools (1.19.2-1) ... 2261s Setting up libcommons-jexl2-java (2.1.1-6) ... 2261s Setting up libthai0:arm64 (0.1.29-2) ... 2261s Setting up libsisu-plexus-java (0.3.4-3) ... 2261s Setting up libstreambuffer-java (1.5.4-1.1) ... 2261s Setting up libcommons-collections4-java (4.4-2) ... 2261s Setting up libcommons-lang3-java (3.14.0-1) ... 2261s Setting up librngom-java (2.3.0.1-10.1) ... 2261s Setting up libjni-inchi-jni (0.8+dfsg-7) ... 2261s Setting up libjgraphx-java (2.1.0.7-3) ... 2261s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2261s Setting up libplexus-sec-dispatcher-java (2.0-3) ... 2261s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 2261s Setting up libsnappy-java (1.1.10.5-1) ... 2261s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2261s Setting up libxsom-java (2.3.0.1-10.1) ... 2261s Setting up libcommons-codec-java (1.16.0-1) ... 2261s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 2261s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 2261s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 2261s Setting up fontconfig (2.15.0-1ubuntu1) ... 2263s Regenerating fonts cache... done. 2263s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 2263s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 2263s Setting up libglx0:arm64 (1.7.0-1) ... 2263s Setting up libcommons-compress-java (1.25.0-1) ... 2263s Setting up libcommons-io-java (2.11.0-2) ... 2263s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2263s Setting up libcairo2:arm64 (1.18.0-1) ... 2263s Setting up libmaven-resolver-java (1.6.3-1) ... 2263s Setting up libgl1:arm64 (1.7.0-1) ... 2263s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 2263s Setting up libhttpclient-java (4.5.14-1) ... 2263s Setting up liblightcouch-java (0.2.0-1) ... 2263s Setting up libwagon-http-java (3.5.3-1) ... 2263s Setting up libmaven-shared-utils-java (3.3.4-1) ... 2263s Setting up libfastinfoset-java (1.2.12-3) ... 2263s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 2263s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2263s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 2263s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2263s Setting up libplexus-io-java (3.3.1-2) ... 2263s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 2263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 2263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 2263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 2263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 2263s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 2263s Setting up liblog4j2-java (2.19.0-2) ... 2263s Setting up libplexus-archiver-java (4.6.1-1) ... 2263s Setting up libbarclay-java (5.0.0+dfsg-1) ... 2263s Setting up libgkl-java (0.8.11+dfsg-2) ... 2263s Setting up libmaven-archiver-java (3.6.0-1) ... 2263s Setting up libpicard-java (3.1.1+dfsg-1) ... 2263s Setting up adwaita-icon-theme (46~rc-1) ... 2264s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 2264s Setting up liberror-prone-java (2.18.0-1) ... 2264s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 2264s Setting up humanity-icon-theme (0.6.16) ... 2265s Setting up libguava-java (32.0.1-1) ... 2265s Setting up libplexus-container-default-java (2.1.1-1) ... 2265s Setting up ubuntu-mono (24.04-0ubuntu1) ... 2265s Setting up libguice-java (4.2.3-2) ... 2265s Setting up libmaven3-core-java (3.8.7-2) ... 2265s Setting up libmaven-shared-incremental-java (1.1-4) ... 2265s Setting up libmaven-shared-io-java (3.0.0-4) ... 2265s Setting up libplexus-compiler-java (2.12.1-2) ... 2265s Setting up libmaven-compiler-plugin-java (3.10.1-2) ... 2265s Setting up libjni-inchi-java (0.8+dfsg-7) ... 2265s Setting up libmaven-file-management-java (3.0.0-1) ... 2265s Setting up libjmol-java (14.32.83+dfsg-3) ... 2265s Setting up libmaven-jar-plugin-java (3.3.0-2) ... 2265s Setting up libcommons-text-java (1.11.0-1) ... 2265s Setting up libmsgpack-java (0.9.6-1) ... 2265s Setting up libmmtf-java (1.0.11-1) ... 2265s Setting up libjgrapht-java (1.5.2-1) ... 2265s Processing triggers for libc-bin (2.39-0ubuntu6) ... 2266s Processing triggers for man-db (2.12.0-3) ... 2273s Processing triggers for ca-certificates-java (20240118) ... 2279s Adding debian:ACCVRAIZ1.pem 2279s Adding debian:AC_RAIZ_FNMT-RCM.pem 2279s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 2279s Adding debian:ANF_Secure_Server_Root_CA.pem 2279s Adding debian:Actalis_Authentication_Root_CA.pem 2279s Adding debian:AffirmTrust_Commercial.pem 2279s Adding debian:AffirmTrust_Networking.pem 2279s Adding debian:AffirmTrust_Premium.pem 2279s Adding debian:AffirmTrust_Premium_ECC.pem 2279s Adding debian:Amazon_Root_CA_1.pem 2279s Adding debian:Amazon_Root_CA_2.pem 2279s Adding debian:Amazon_Root_CA_3.pem 2279s Adding debian:Amazon_Root_CA_4.pem 2279s Adding debian:Atos_TrustedRoot_2011.pem 2279s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 2279s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 2279s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 2279s Adding debian:BJCA_Global_Root_CA1.pem 2279s Adding debian:BJCA_Global_Root_CA2.pem 2279s Adding debian:Baltimore_CyberTrust_Root.pem 2279s Adding debian:Buypass_Class_2_Root_CA.pem 2279s Adding debian:Buypass_Class_3_Root_CA.pem 2279s Adding debian:CA_Disig_Root_R2.pem 2279s Adding debian:CFCA_EV_ROOT.pem 2279s Adding debian:COMODO_Certification_Authority.pem 2279s Adding debian:COMODO_ECC_Certification_Authority.pem 2279s Adding debian:COMODO_RSA_Certification_Authority.pem 2279s Adding debian:Certainly_Root_E1.pem 2279s Adding debian:Certainly_Root_R1.pem 2279s Adding debian:Certigna.pem 2279s Adding debian:Certigna_Root_CA.pem 2279s Adding debian:Certum_EC-384_CA.pem 2279s Adding debian:Certum_Trusted_Network_CA.pem 2279s Adding debian:Certum_Trusted_Network_CA_2.pem 2279s Adding debian:Certum_Trusted_Root_CA.pem 2279s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 2279s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 2279s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 2279s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 2279s Adding debian:Comodo_AAA_Services_root.pem 2279s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 2279s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 2279s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 2279s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 2279s Adding debian:DigiCert_Assured_ID_Root_CA.pem 2279s Adding debian:DigiCert_Assured_ID_Root_G2.pem 2279s Adding debian:DigiCert_Assured_ID_Root_G3.pem 2279s Adding debian:DigiCert_Global_Root_CA.pem 2279s Adding debian:DigiCert_Global_Root_G2.pem 2279s Adding debian:DigiCert_Global_Root_G3.pem 2279s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 2279s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 2279s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 2279s Adding debian:DigiCert_Trusted_Root_G4.pem 2279s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 2279s Adding debian:Entrust_Root_Certification_Authority.pem 2279s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 2279s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 2279s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 2279s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 2279s Adding debian:GLOBALTRUST_2020.pem 2279s Adding debian:GTS_Root_R1.pem 2279s Adding debian:GTS_Root_R2.pem 2279s Adding debian:GTS_Root_R3.pem 2279s Adding debian:GTS_Root_R4.pem 2279s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 2279s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 2279s Adding debian:GlobalSign_Root_CA.pem 2279s Adding debian:GlobalSign_Root_CA_-_R3.pem 2279s Adding debian:GlobalSign_Root_CA_-_R6.pem 2279s Adding debian:GlobalSign_Root_E46.pem 2280s Adding debian:GlobalSign_Root_R46.pem 2280s Adding debian:Go_Daddy_Class_2_CA.pem 2280s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 2280s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 2280s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 2280s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 2280s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 2280s Adding debian:HiPKI_Root_CA_-_G1.pem 2280s Adding debian:Hongkong_Post_Root_CA_3.pem 2280s Adding debian:ISRG_Root_X1.pem 2280s Adding debian:ISRG_Root_X2.pem 2280s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 2280s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 2280s Adding debian:Izenpe.com.pem 2280s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 2280s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 2280s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 2280s Adding debian:NAVER_Global_Root_Certification_Authority.pem 2280s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 2280s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 2280s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 2280s Adding debian:QuoVadis_Root_CA_1_G3.pem 2280s Adding debian:QuoVadis_Root_CA_2.pem 2280s Adding debian:QuoVadis_Root_CA_2_G3.pem 2280s Adding debian:QuoVadis_Root_CA_3.pem 2280s Adding debian:QuoVadis_Root_CA_3_G3.pem 2280s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 2281s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 2281s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 2281s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 2281s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 2281s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 2281s Adding debian:SZAFIR_ROOT_CA2.pem 2281s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 2281s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 2281s Adding debian:SecureSign_RootCA11.pem 2281s Adding debian:SecureTrust_CA.pem 2281s Adding debian:Secure_Global_CA.pem 2281s Adding debian:Security_Communication_ECC_RootCA1.pem 2281s Adding debian:Security_Communication_RootCA2.pem 2281s Adding debian:Security_Communication_RootCA3.pem 2281s Adding debian:Security_Communication_Root_CA.pem 2281s Adding debian:Starfield_Class_2_CA.pem 2281s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 2281s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 2281s Adding debian:SwissSign_Gold_CA_-_G2.pem 2281s Adding debian:SwissSign_Silver_CA_-_G2.pem 2281s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 2281s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 2281s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 2281s Adding debian:TWCA_Global_Root_CA.pem 2281s Adding debian:TWCA_Root_Certification_Authority.pem 2281s Adding debian:TeliaSonera_Root_CA_v1.pem 2281s Adding debian:Telia_Root_CA_v2.pem 2281s Adding debian:TrustAsia_Global_Root_CA_G3.pem 2281s Adding debian:TrustAsia_Global_Root_CA_G4.pem 2281s Adding debian:Trustwave_Global_Certification_Authority.pem 2281s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 2281s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 2281s Adding debian:TunTrust_Root_CA.pem 2281s Adding debian:UCA_Extended_Validation_Root.pem 2281s Adding debian:UCA_Global_G2_Root.pem 2281s Adding debian:USERTrust_ECC_Certification_Authority.pem 2281s Adding debian:USERTrust_RSA_Certification_Authority.pem 2281s Adding debian:XRamp_Global_CA_Root.pem 2281s Adding debian:certSIGN_ROOT_CA.pem 2281s Adding debian:certSIGN_Root_CA_G2.pem 2281s Adding debian:e-Szigno_Root_CA_2017.pem 2281s Adding debian:ePKI_Root_Certification_Authority.pem 2281s Adding debian:emSign_ECC_Root_CA_-_C3.pem 2281s Adding debian:emSign_ECC_Root_CA_-_G3.pem 2281s Adding debian:emSign_Root_CA_-_C1.pem 2281s Adding debian:emSign_Root_CA_-_G1.pem 2281s Adding debian:vTrus_ECC_Root_CA.pem 2282s Adding debian:vTrus_Root_CA.pem 2282s done. 2282s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 2282s Setting up ant (1.10.14-1) ... 2282s Setting up default-jre-headless (2:1.21-75+exp1) ... 2282s Setting up default-jre (2:1.21-75+exp1) ... 2282s Setting up picard-tools (3.1.1+dfsg-1) ... 2282s Setting up ant-optional (1.10.14-1) ... 2282s Setting up libistack-commons-java (3.0.6-5) ... 2282s Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 2282s Setting up libtxw2-java (2.3.0.1-10.1) ... 2282s Setting up libjaxb-java (2.3.0.1-10.1) ... 2282s Setting up libbiojava6-java (6.1.0+dfsg-4) ... 2282s Setting up drop-seq-tools (2.5.4+dfsg-1) ... 2282s Setting up autopkgtest-satdep (0) ... 2321s (Reading database ... 93161 files and directories currently installed.) 2321s Removing autopkgtest-satdep (0) ... 2338s autopkgtest [18:05:30]: test drop-seq-run-unit-test: [----------------------- 2341s Test 1 2341s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2361s INFO 2024-03-24 18:05:46 TagBamWithReadSequenceExtended 2361s 2361s ********** NOTE: Picard's command line syntax is changing. 2361s ********** 2361s ********** For more information, please see: 2361s ********** 2361s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 2361s ********** 2361s ********** The command line looks like this in the new syntax: 2361s ********** 2361s ********** TagBamWithReadSequenceExtended -INPUT org/broadinstitute/dropseq/annotation/test.bam -OUTPUT out/TagBamWithReadSequenceExtended-cellular.bam -SUMMARY TagBamWithReadSequenceExtended-cellular.bam_summary.txt -BASE_RANGE 1-12 -BASE_QUALITY 10 -BARCODED_READ 1 -DISCARD_READ false -TAG_NAME XC -NUM_BASES_BELOW_QUALITY 1 2361s ********** 2361s 2361s 2361s Passed 2361s 2361s 18:05:47.482 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2361s 18:05:47.497 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2361s 18:05:47.508 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2361s 18:05:47.515 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2361s 18:05:47.520 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2361s 18:05:47.521 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2361s [Sun Mar 24 18:05:47 UTC 2024] TagBamWithReadSequenceExtended INPUT=org/broadinstitute/dropseq/annotation/test.bam OUTPUT=out/TagBamWithReadSequenceExtended-cellular.bam SUMMARY=TagBamWithReadSequenceExtended-cellular.bam_summary.txt BASE_RANGE=1-12 BARCODED_READ=1 DISCARD_READ=false BASE_QUALITY=10 NUM_BASES_BELOW_QUALITY=1 TAG_NAME=XC TAG_BARCODED_READ=false HARD_CLIP_BASES=false TAG_QUALITY=XQ VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 2361s [Sun Mar 24 18:05:47 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 2361s 18:05:47.613 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 2361s 18:05:47.637 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 2361s INFO 2024-03-24 18:05:47 CustomBAMIterators Input SAM/BAM not in queryname order, sorting... 2361s INFO 2024-03-24 18:05:47 CustomBAMIterators Reading in records for query name sorting 2361s INFO 2024-03-24 18:05:48 CustomBAMIterators Sorting finished. 2361s 18:05:48.032 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 2361s INFO 2024-03-24 18:05:48 TagBamWithReadSequenceExtended Total of 0 reads processed. 2361s [Sun Mar 24 18:05:48 UTC 2024] org.broadinstitute.dropseqrna.utils.TagBamWithReadSequenceExtended done. Elapsed time: 0.01 minutes. 2361s Runtime.totalMemory()=129761280 2361s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2361s Test 2 2363s INFO 2024-03-24 18:05:57 TagBamWithReadSequenceExtended 2363s 2363s ********** NOTE: Picard's command line syntax is changing. 2363s ********** 2363s ********** For more information, please see: 2363s ********** 2363s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 2363s ********** 2363s ********** The command line looks like this in the new syntax: 2363s ********** 2363s ********** TagBamWithReadSequenceExtended -INPUT org/broadinstitute/dropseq/annotation/test.bam -OUTPUT out/TagBamWithReadSequenceExtended-molecular.bam -SUMMARY TagBamWithReadSequenceExtended-molecular.bam_summary.txt -BASE_RANGE 1-12 -BASE_QUALITY 10 -BARCODED_READ 1 -DISCARD_READ false -TAG_NAME XM -NUM_BASES_BELOW_QUALITY 1 2363s ********** 2363s 2363s 2363s 18:05:57.800 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2363s 18:05:57.810 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2363s 18:05:57.815 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2363s 18:05:57.823 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2363s 18:05:57.825 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2363s 18:05:57.827 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2363s [Sun Mar 24 18:05:57 UTC 2024] TagBamWithReadSequenceExtended INPUT=org/broadinstitute/dropseq/annotation/test.bam OUTPUT=out/TagBamWithReadSequenceExtended-molecular.bam SUMMARY=TagBamWithReadSequenceExtended-molecular.bam_summary.txt BASE_RANGE=1-12 BARCODED_READ=1 DISCARD_READ=false BASE_QUALITY=10 NUM_BASES_BELOW_QUALITY=1 TAG_NAME=XM TAG_BARCODED_READ=false HARD_CLIP_BASES=false TAG_QUALITY=XQ VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 2363s [Sun Mar 24 18:05:57 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 2363s 18:05:57.936 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 2364s 18:05:57.965 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 2364s INFO 2024-03-24 18:05:58 CustomBAMIterators Input SAM/BAM not in queryname order, sorting... 2364s INFO 2024-03-24 18:05:58 CustomBAMIterators Reading in records for query name sorting 2364s INFO 2024-03-24 18:05:58 CustomBAMIterators Sorting finished. 2364s 18:05:58.492 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 2364s INFO 2024-03-24 18:05:58 TagBamWithReadSequenceExtended Total of 0 reads processed. 2364s [Sun Mar 24 18:05:58 UTC 2024] org.broadinstitute.dropseqrna.utils.TagBamWithReadSequenceExtended done. Elapsed time: 0.02 minutes. 2364s Runtime.totalMemory()=129761280 2364s Passed 2364s 2364s Test 3 2365s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2373s INFO 2024-03-24 18:06:07 FilterBam 2373s 2373s ********** NOTE: Picard's command line syntax is changing. 2373s ********** 2373s ********** For more information, please see: 2373s ********** 2373s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 2373s ********** 2373s ********** The command line looks like this in the new syntax: 2373s ********** 2373s ********** FilterBam -TAG_REJECT XQ -INPUT org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam -OUTPUT out/FilterBam.bam 2373s ********** 2373s 2373s 2373s 18:06:07.871 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2373s 18:06:07.882 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2373s 18:06:07.885 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2373s 18:06:07.891 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2373s 18:06:07.893 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2373s 18:06:07.895 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2373s [Sun Mar 24 18:06:07 UTC 2024] FilterBam INPUT=org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam OUTPUT=out/FilterBam.bam TAG_REJECT=[XQ] FILTER_PCR_DUPES=false RETAIN_ONLY_PRIMARY_READS=false DROP_REJECTED_REF=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 2373s [Sun Mar 24 18:06:07 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 2374s 18:06:08.259 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 2375s INFO 2024-03-24 18:06:09 FilterBam Total 995 reads processed. 995 reads accepted; 0 reads rejected. 2375s [Sun Mar 24 18:06:09 UTC 2024] org.broadinstitute.dropseqrna.utils.FilterBam done. Elapsed time: 0.02 minutes. 2375s Runtime.totalMemory()=129761280 2375s Passed 2375s 2375s Test 4 2375s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2389s INFO 2024-03-24 18:06:23 TrimStartingSequence 2389s 2389s ********** NOTE: Picard's command line syntax is changing. 2389s ********** 2389s ********** For more information, please see: 2389s ********** 2389s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 2389s ********** 2389s ********** The command line looks like this in the new syntax: 2389s ********** 2389s ********** TrimStartingSequence -INPUT out/FilterBam.bam -OUTPUT out/TrimStartingSequence.bam -OUTPUT_SUMMARY out/TrimStartingSequence.summary.txt -SEQUENCE AAGCAGTGGTATCAACGCAGAGTGAATGGG -MISMATCHES 0 -NUM_BASES 5 2389s ********** 2389s 2389s 2389s 18:06:23.536 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2389s 18:06:23.546 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2389s 18:06:23.549 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2389s 18:06:23.556 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2389s 18:06:23.558 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2389s 18:06:23.559 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2389s [Sun Mar 24 18:06:23 UTC 2024] TrimStartingSequence INPUT=out/FilterBam.bam OUTPUT=out/TrimStartingSequence.bam OUTPUT_SUMMARY=out/TrimStartingSequence.summary.txt SEQUENCE=AAGCAGTGGTATCAACGCAGAGTGAATGGG MISMATCHES=0 NUM_BASES=5 LEGACY=false TRIM_TAG=ZS VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 2389s [Sun Mar 24 18:06:23 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 2389s 18:06:23.658 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 2389s 18:06:23.730 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 2389s 18:06:23.878 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 2390s INFO 2024-03-24 18:06:24 TrimStartingSequence Number of reads trimmed: 210 total reads: 995 2390s [Sun Mar 24 18:06:24 UTC 2024] org.broadinstitute.dropseqrna.readtrimming.TrimStartingSequence done. Elapsed time: 0.02 minutes. 2390s Runtime.totalMemory()=129761280 2391s Passed 2391s 2391s Test 5 2391s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2404s INFO 2024-03-24 18:06:38 PolyATrimmer 2404s 2404s ********** NOTE: Picard's command line syntax is changing. 2404s ********** 2404s ********** For more information, please see: 2404s ********** 2404s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 2404s ********** 2404s ********** The command line looks like this in the new syntax: 2404s ********** 2404s ********** PolyATrimmer -INPUT out/TrimStartingSequence.bam -OUTPUT out/PolyATrimmer.bam -OUTPUT_SUMMARY out/PolyATrimmer.summary.bam -MISMATCHES 0 -NUM_BASES 6 -USE_NEW_TRIMMER true 2404s ********** 2404s 2404s 2405s 18:06:39.040 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2405s 18:06:39.050 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2405s 18:06:39.053 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2405s 18:06:39.059 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2405s 18:06:39.064 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 2405s 18:06:39.066 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 2405s [Sun Mar 24 18:06:39 UTC 2024] PolyATrimmer INPUT=out/TrimStartingSequence.bam OUTPUT=out/PolyATrimmer.bam OUTPUT_SUMMARY=out/PolyATrimmer.summary.bam USE_NEW_TRIMMER=true MISMATCHES=0 NUM_BASES=6 TRIM_TAG=ZP ADAPTER=~XM~XC MAX_ADAPTER_ERROR_RATE=0.1 MIN_ADAPTER_MATCH=4 MIN_POLY_A_LENGTH=20 MIN_POLY_A_LENGTH_NO_ADAPTER_MATCH=6 DUBIOUS_ADAPTER_MATCH_LENGTH=6 MAX_POLY_A_ERROR_RATE=0.1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 2405s [Sun Mar 24 18:06:39 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4() 2405s 18:06:39.384 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 2405s 18:06:39.411 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater 2405s 18:06:39.617 WARN IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater 2407s INFO 2024-03-24 18:06:40 PolyATrimmer Total 995 reads processed. 2407s INFO 2024-03-24 18:06:40 PolyATrimmer Number of reads trimmed: 290 2407s INFO 2024-03-24 18:06:40 PolyATrimmer Number of reads completely trimmed: 6 2407s [Sun Mar 24 18:06:41 UTC 2024] org.broadinstitute.dropseqrna.readtrimming.PolyATrimmer done. Elapsed time: 0.04 minutes. 2407s Runtime.totalMemory()=129761280 2407s Passed 2407s 2408s autopkgtest [18:06:42]: test drop-seq-run-unit-test: -----------------------] 2409s autopkgtest [18:06:43]: test drop-seq-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 2409s drop-seq-run-unit-test PASS 2412s autopkgtest [18:06:46]: test fastqc-run-unit-test: preparing testbed 2532s autopkgtest [18:08:46]: testbed dpkg architecture: arm64 2532s autopkgtest [18:08:46]: testbed apt version: 2.7.12 2532s autopkgtest [18:08:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 2535s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 2535s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 2535s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 2535s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 2535s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 2535s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [710 kB] 2535s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 2535s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 2535s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 2535s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 2535s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 2535s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 2535s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 2543s Fetched 9851 kB in 3s (3367 kB/s) 2543s Reading package lists... 2547s Reading package lists... 2558s Building dependency tree... 2558s Reading state information...sh: Attempting to set up Debian/Ubuntu apt sources automatically 2558s 2558s Calculating upgrade... 2558s The following packages will be REMOVED: 2558s libssl3 2558s The following NEW packages will be installed: 2558s libssl3t64 2558s The following packages have been kept back: 2558s curl 2558s The following packages will be upgraded: 2558s openssl 2558s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 2558s Need to get 2777 kB of archives. 2558s After this operation, 139 kB of additional disk space will be used. 2558s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 2558s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 2558s Fetched 2777 kB in 1s (4006 kB/s) 2558s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 2558s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 2558s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 2558s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 2558s wget depends on libssl3 (>= 3.0.0). 2558s u-boot-tools depends on libssl3 (>= 3.0.0). 2558s tnftp depends on libssl3 (>= 3.0.0). 2558s tcpdump depends on libssl3 (>= 3.0.0). 2558s systemd-resolved depends on libssl3 (>= 3.0.0). 2558s systemd depends on libssl3 (>= 3.0.0). 2558s sudo depends on libssl3 (>= 3.0.0). 2558s sbsigntool depends on libssl3 (>= 3.0.0). 2558s rsync depends on libssl3 (>= 3.0.0). 2558s python3-cryptography depends on libssl3 (>= 3.0.0). 2558s openssh-server depends on libssl3 (>= 3.0.10). 2558s openssh-client depends on libssl3 (>= 3.0.10). 2558s mtd-utils depends on libssl3 (>= 3.0.0). 2558s mokutil depends on libssl3 (>= 3.0.0). 2558s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 2558s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 2558s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 2558s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 2558s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 2558s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 2558s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 2558s libnvme1 depends on libssl3 (>= 3.0.0). 2558s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 2558s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 2558s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 2558s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 2558s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 2558s kmod depends on libssl3 (>= 3.0.0). 2558s dhcpcd-base depends on libssl3 (>= 3.0.0). 2558s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 2558s 2558s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 2558s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 2558s Selecting previously unselected package libssl3t64:arm64. 2558s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 2558s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 2558s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 2558s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 2558s Setting up openssl (3.0.13-0ubuntu2) ... 2558s Processing triggers for man-db (2.12.0-3) ... 2558s Processing triggers for libc-bin (2.39-0ubuntu6) ... 2558s Reading package lists... 2558s Building dependency tree... 2558s Reading state information... 2558s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 2558s Reading package lists... 2558s Building dependency tree...sh: Distribution appears to be Ubuntu 2559s 2559s Reading state information... 2560s eatmydata is already the newest version (131-1). 2560s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2560s Reading package lists... 2560s Building dependency tree... 2560s Reading state information... 2562s dbus is already the newest version (1.14.10-4ubuntu1). 2562s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2562s Reading package lists... 2567s Building dependency tree... 2567s Reading state information... 2567s rng-tools-debian is already the newest version (2.4). 2567s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2567s Reading package lists... 2567s Building dependency tree... 2567s Reading state information... 2567s The following packages will be REMOVED: 2567s cloud-init* python3-configobj* python3-debconf* 2567s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 2567s After this operation, 3256 kB disk space will be freed. 2567s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 2567s Removing cloud-init (24.1.2-0ubuntu1) ... 2568s Removing python3-configobj (5.0.8-3) ... 2568s Removing python3-debconf (1.5.86) ... 2568s Processing triggers for man-db (2.12.0-3) ... 2569s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 2575s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 2575s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 2575s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 2575s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 2575s invoke-rc.d: policy-rc.d denied execution of try-restart. 2575s Reading package lists... 2575s Building dependency tree... 2575s Reading state information... 2575s linux-generic is already the newest version (6.8.0-11.11+1). 2575s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2575s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 2575s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 2579s Reading package lists... 2579s Reading package lists... 2580s Building dependency tree... 2580s Reading state information... 2585s Calculating upgrade... 2585s autopkgtest [18:09:38]: rebooting testbed after setup commands that affected boot 2585s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2585s Reading package lists... 2585s Building dependency tree... 2585s Reading state information... 2585s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2763s Reading package lists... 2763s Building dependency tree... 2763s Reading state information... 2764s Starting pkgProblemResolver with broken count: 0 2764s Starting 2 pkgProblemResolver with broken count: 0 2764s Done 2766s The following additional packages will be installed: 2766s adwaita-icon-theme at-spi2-common ca-certificates-java default-jre 2766s default-jre-headless fastqc fontconfig fontconfig-config fonts-dejavu-core 2766s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 2766s humanity-icon-theme java-common libaec0 libapache-pom-java libargs4j-java 2766s libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 2766s libavahi-common3 libcairo2 libcommons-compress-java libcommons-io-java 2766s libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java 2766s libcommons-math3-java libcommons-parent-java libcups2 libdatrie1 libdeflate0 2766s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfindbin-libs-perl 2766s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 2766s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 2766s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhdf5-103-1 libhtsjdk-java 2766s libjbig0 libjbzip2-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 2766s libllvm17 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java 2766s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 2766s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 2766s librhino-java libsharpyuv0 libsis-base-java libsis-base-jni 2766s libsis-jhdf5-java libsis-jhdf5-jni libsnappy-java libsnappy-jni libsnappy1v5 2766s libsz2 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1 2766s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 2766s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 2766s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 2766s libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre 2766s openjdk-21-jre-headless ubuntu-mono unzip x11-common 2766s Suggested packages: 2766s libasound2-plugins alsa-utils libasm-java libxz-java libcommons-io-java-doc 2766s libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java 2766s cups-common gvfs picard-tools liblcms2-utils libngs-java-doc pcscd rhino 2766s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 2766s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic zip 2766s Recommended packages: 2766s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 2766s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 2766s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 2766s The following NEW packages will be installed: 2766s adwaita-icon-theme at-spi2-common autopkgtest-satdep ca-certificates-java 2766s default-jre default-jre-headless fastqc fontconfig fontconfig-config 2766s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 2766s humanity-icon-theme java-common libaec0 libapache-pom-java libargs4j-java 2766s libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 2766s libavahi-common3 libcairo2 libcommons-compress-java libcommons-io-java 2766s libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java 2766s libcommons-math3-java libcommons-parent-java libcups2 libdatrie1 libdeflate0 2766s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfindbin-libs-perl 2766s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 2766s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 2766s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhdf5-103-1 libhtsjdk-java 2766s libjbig0 libjbzip2-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 2766s libllvm17 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java 2766s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 2766s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 2766s librhino-java libsharpyuv0 libsis-base-java libsis-base-jni 2766s libsis-jhdf5-java libsis-jhdf5-jni libsnappy-java libsnappy-jni libsnappy1v5 2766s libsz2 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1 2766s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 2766s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1 2766s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 2766s libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre 2766s openjdk-21-jre-headless ubuntu-mono unzip x11-common 2766s 0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded. 2766s Need to get 103 MB/103 MB of archives. 2766s After this operation, 445 MB of additional disk space will be used. 2766s Get:1 /tmp/autopkgtest.w2H4x5/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 2766s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 2766s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 2766s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 2766s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 2766s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 2766s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 2766s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 2766s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 2766s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 2766s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 2767s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 2767s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 2767s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 2767s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 2767s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 2767s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 2767s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 2767s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 2767s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 2767s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 2767s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 2767s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 2767s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 2767s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 2767s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 2767s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 2767s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 2767s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 2767s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 2767s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 2767s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 2767s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 2767s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 2768s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 2769s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 2769s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 2769s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 2769s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 2769s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 2769s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 2769s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 2769s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 2769s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 2769s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 2769s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 2769s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 2769s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 2769s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 2769s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 2769s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 2769s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 2769s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 2769s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 2769s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 2769s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 2769s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 2769s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 2769s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 2769s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 2769s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 2769s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 2769s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 2769s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 2769s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 2769s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 2769s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 2769s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 2769s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 2769s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 2769s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 2769s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 2769s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 2769s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 2769s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 2769s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 2769s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 2769s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 2769s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 2769s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 2769s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 2769s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 2769s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 2769s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math3-java all 3.6.1-3 [2016 kB] 2769s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjbzip2-java all 0.9.1-8 [42.4 kB] 2769s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 2769s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 2769s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 2769s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 2769s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 2769s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 2769s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 2769s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 2770s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 2770s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 2770s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 2770s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 2770s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 2770s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 2770s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 2770s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 2770s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 2770s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 2770s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 2770s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libfindbin-libs-perl all 3.0.2-1 [22.3 kB] 2770s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libargs4j-java all 2.33-2 [137 kB] 2770s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 2770s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 2770s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libsis-base-jni arm64 18.09~pre1+git20180928.45fbd31+dfsg-3 [13.2 kB] 2770s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libsis-base-java all 18.09~pre1+git20180928.45fbd31+dfsg-3 [96.4 kB] 2770s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 2770s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 2770s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 2770s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libsis-jhdf5-jni arm64 19.04.1+dfsg-4 [111 kB] 2770s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libsis-jhdf5-java all 19.04.1+dfsg-4 [1491 kB] 2770s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 fastqc all 0.12.1+dfsg-3 [379 kB] 2770s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 2772s Fetched 103 MB in 5s (22.3 MB/s) 2772s Selecting previously unselected package libgdk-pixbuf2.0-common. 2772s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 2772s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 2772s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 2772s Selecting previously unselected package libjpeg-turbo8:arm64. 2772s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 2772s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2772s Selecting previously unselected package libjpeg8:arm64. 2772s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 2772s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 2772s Selecting previously unselected package libdeflate0:arm64. 2772s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 2772s Unpacking libdeflate0:arm64 (1.19-1) ... 2772s Selecting previously unselected package libjbig0:arm64. 2772s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 2772s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 2772s Selecting previously unselected package liblerc4:arm64. 2772s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 2772s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2772s Selecting previously unselected package libsharpyuv0:arm64. 2772s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 2772s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 2772s Selecting previously unselected package libwebp7:arm64. 2772s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 2772s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 2772s Selecting previously unselected package libtiff6:arm64. 2772s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 2772s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2772s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 2772s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 2772s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 2772s Selecting previously unselected package gtk-update-icon-cache. 2773s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 2773s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 2773s Selecting previously unselected package hicolor-icon-theme. 2773s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 2773s Unpacking hicolor-icon-theme (0.17-2) ... 2773s Selecting previously unselected package humanity-icon-theme. 2773s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 2773s Unpacking humanity-icon-theme (0.6.16) ... 2775s Selecting previously unselected package ubuntu-mono. 2775s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 2775s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 2776s Selecting previously unselected package adwaita-icon-theme. 2776s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 2776s Unpacking adwaita-icon-theme (46~rc-1) ... 2777s Selecting previously unselected package at-spi2-common. 2777s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 2777s Unpacking at-spi2-common (2.50.0-1) ... 2777s Selecting previously unselected package ca-certificates-java. 2777s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 2777s Unpacking ca-certificates-java (20240118) ... 2777s Selecting previously unselected package java-common. 2777s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 2777s Unpacking java-common (0.75+exp1) ... 2777s Selecting previously unselected package libavahi-common-data:arm64. 2777s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 2777s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 2777s Selecting previously unselected package libavahi-common3:arm64. 2777s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 2777s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 2777s Selecting previously unselected package libavahi-client3:arm64. 2777s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 2777s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 2777s Selecting previously unselected package libcups2:arm64. 2777s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 2777s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 2777s Selecting previously unselected package liblcms2-2:arm64. 2777s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 2777s Unpacking liblcms2-2:arm64 (2.14-2) ... 2777s Selecting previously unselected package fonts-dejavu-mono. 2777s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 2777s Unpacking fonts-dejavu-mono (2.37-8) ... 2778s Selecting previously unselected package fonts-dejavu-core. 2778s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 2778s Unpacking fonts-dejavu-core (2.37-8) ... 2778s Selecting previously unselected package fontconfig-config. 2778s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 2778s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 2778s Selecting previously unselected package libfontconfig1:arm64. 2778s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 2778s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2778s Selecting previously unselected package libasound2-data. 2778s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 2778s Unpacking libasound2-data (1.2.10-3build1) ... 2778s Selecting previously unselected package libasound2:arm64. 2778s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 2778s Unpacking libasound2:arm64 (1.2.10-3build1) ... 2778s Selecting previously unselected package libgraphite2-3:arm64. 2778s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 2778s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 2779s Selecting previously unselected package libharfbuzz0b:arm64. 2779s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 2779s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 2779s Selecting previously unselected package libpcsclite1:arm64. 2779s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 2779s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 2784s Selecting previously unselected package openjdk-21-jre-headless:arm64. 2784s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 2784s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 2784s Selecting previously unselected package default-jre-headless. 2784s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 2784s Unpacking default-jre-headless (2:1.21-75+exp1) ... 2784s Selecting previously unselected package libgtk2.0-common. 2784s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 2784s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 2784s Selecting previously unselected package libatk1.0-0:arm64. 2784s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 2784s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 2784s Selecting previously unselected package libpixman-1-0:arm64. 2784s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 2784s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 2784s Selecting previously unselected package libxcb-render0:arm64. 2784s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 2784s Unpacking libxcb-render0:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxcb-shm0:arm64. 2784s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 2784s Unpacking libxcb-shm0:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxrender1:arm64. 2784s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 2784s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 2784s Selecting previously unselected package libcairo2:arm64. 2784s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 2784s Unpacking libcairo2:arm64 (1.18.0-1) ... 2784s Selecting previously unselected package fontconfig. 2784s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 2784s Unpacking fontconfig (2.15.0-1ubuntu1) ... 2784s Selecting previously unselected package libthai-data. 2784s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 2784s Unpacking libthai-data (0.1.29-2) ... 2784s Selecting previously unselected package libdatrie1:arm64. 2784s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 2784s Unpacking libdatrie1:arm64 (0.2.13-3) ... 2784s Selecting previously unselected package libthai0:arm64. 2784s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 2784s Unpacking libthai0:arm64 (0.1.29-2) ... 2784s Selecting previously unselected package libpango-1.0-0:arm64. 2784s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 2784s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2784s Selecting previously unselected package libpangoft2-1.0-0:arm64. 2784s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 2784s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2784s Selecting previously unselected package libpangocairo-1.0-0:arm64. 2784s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 2784s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2784s Selecting previously unselected package libxcomposite1:arm64. 2784s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 2784s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 2784s Selecting previously unselected package libxfixes3:arm64. 2784s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 2784s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 2784s Selecting previously unselected package libxcursor1:arm64. 2784s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 2784s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 2784s Selecting previously unselected package libxdamage1:arm64. 2784s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 2784s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 2784s Selecting previously unselected package libxi6:arm64. 2784s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 2784s Unpacking libxi6:arm64 (2:1.8.1-1) ... 2784s Selecting previously unselected package libxinerama1:arm64. 2784s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 2784s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 2784s Selecting previously unselected package libxrandr2:arm64. 2784s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 2784s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 2784s Selecting previously unselected package libgtk2.0-0:arm64. 2784s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 2784s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 2784s Selecting previously unselected package libglvnd0:arm64. 2784s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 2784s Unpacking libglvnd0:arm64 (1.7.0-1) ... 2784s Selecting previously unselected package libglapi-mesa:arm64. 2784s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 2784s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 2784s Selecting previously unselected package libx11-xcb1:arm64. 2784s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 2784s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 2784s Selecting previously unselected package libxcb-dri2-0:arm64. 2784s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 2784s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxcb-dri3-0:arm64. 2784s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 2784s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxcb-glx0:arm64. 2784s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 2784s Unpacking libxcb-glx0:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxcb-present0:arm64. 2784s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 2784s Unpacking libxcb-present0:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxcb-randr0:arm64. 2784s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 2784s Unpacking libxcb-randr0:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxcb-sync1:arm64. 2784s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 2784s Unpacking libxcb-sync1:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxcb-xfixes0:arm64. 2784s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 2784s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 2784s Selecting previously unselected package libxshmfence1:arm64. 2784s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 2784s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 2784s Selecting previously unselected package libxxf86vm1:arm64. 2784s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 2784s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 2785s Selecting previously unselected package libvulkan1:arm64. 2785s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 2785s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 2785s Selecting previously unselected package libdrm-amdgpu1:arm64. 2785s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 2785s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 2785s Selecting previously unselected package libdrm-nouveau2:arm64. 2785s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 2785s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 2785s Selecting previously unselected package libdrm-radeon1:arm64. 2785s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 2785s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 2785s Selecting previously unselected package libllvm17:arm64. 2785s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 2785s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 2786s Selecting previously unselected package libgl1-mesa-dri:arm64. 2786s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 2786s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 2787s Selecting previously unselected package libglx-mesa0:arm64. 2787s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 2787s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 2787s Selecting previously unselected package libglx0:arm64. 2787s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 2787s Unpacking libglx0:arm64 (1.7.0-1) ... 2787s Selecting previously unselected package libgl1:arm64. 2787s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 2787s Unpacking libgl1:arm64 (1.7.0-1) ... 2787s Selecting previously unselected package libgif7:arm64. 2787s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 2787s Unpacking libgif7:arm64 (5.2.1-2.5) ... 2787s Selecting previously unselected package x11-common. 2787s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 2787s Unpacking x11-common (1:7.7+23ubuntu2) ... 2787s Selecting previously unselected package libxtst6:arm64. 2787s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 2787s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 2787s Selecting previously unselected package openjdk-21-jre:arm64. 2788s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 2788s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 2788s Selecting previously unselected package default-jre. 2788s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 2788s Unpacking default-jre (2:1.21-75+exp1) ... 2788s Selecting previously unselected package libcommons-math3-java. 2788s Preparing to unpack .../082-libcommons-math3-java_3.6.1-3_all.deb ... 2788s Unpacking libcommons-math3-java (3.6.1-3) ... 2788s Selecting previously unselected package libjbzip2-java. 2788s Preparing to unpack .../083-libjbzip2-java_0.9.1-8_all.deb ... 2788s Unpacking libjbzip2-java (0.9.1-8) ... 2788s Selecting previously unselected package libapache-pom-java. 2788s Preparing to unpack .../084-libapache-pom-java_29-2_all.deb ... 2788s Unpacking libapache-pom-java (29-2) ... 2788s Selecting previously unselected package libcommons-parent-java. 2788s Preparing to unpack .../085-libcommons-parent-java_56-1_all.deb ... 2788s Unpacking libcommons-parent-java (56-1) ... 2788s Selecting previously unselected package libcommons-compress-java. 2788s Preparing to unpack .../086-libcommons-compress-java_1.25.0-1_all.deb ... 2788s Unpacking libcommons-compress-java (1.25.0-1) ... 2788s Selecting previously unselected package libcommons-logging-java. 2788s Preparing to unpack .../087-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 2788s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 2788s Selecting previously unselected package libcommons-jexl2-java. 2788s Preparing to unpack .../088-libcommons-jexl2-java_2.1.1-6_all.deb ... 2788s Unpacking libcommons-jexl2-java (2.1.1-6) ... 2788s Selecting previously unselected package libmjson-java. 2788s Preparing to unpack .../089-libmjson-java_1.4.0-3_all.deb ... 2788s Unpacking libmjson-java (1.4.0-3) ... 2788s Selecting previously unselected package libmbedcrypto7:arm64. 2788s Preparing to unpack .../090-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 2788s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 2789s Selecting previously unselected package libmbedx509-1:arm64. 2789s Preparing to unpack .../091-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 2789s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 2789s Selecting previously unselected package libmbedtls14:arm64. 2789s Preparing to unpack .../092-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 2789s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 2789s Selecting previously unselected package ncbi-vdb-data. 2789s Preparing to unpack .../093-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 2789s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 2789s Selecting previously unselected package libncbi-vdb3:arm64. 2789s Preparing to unpack .../094-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 2789s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 2789s Selecting previously unselected package libncbi-ngs3:arm64. 2789s Preparing to unpack .../095-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2789s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 2789s Selecting previously unselected package libngs-jni:arm64. 2789s Preparing to unpack .../096-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2789s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 2789s Selecting previously unselected package libngs-java:arm64. 2789s Preparing to unpack .../097-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 2789s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 2789s Selecting previously unselected package librhino-java. 2789s Preparing to unpack .../098-librhino-java_1.7.14-2.1_all.deb ... 2789s Unpacking librhino-java (1.7.14-2.1) ... 2789s Selecting previously unselected package libsnappy1v5:arm64. 2789s Preparing to unpack .../099-libsnappy1v5_1.1.10-1_arm64.deb ... 2789s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 2789s Selecting previously unselected package libsnappy-jni. 2789s Preparing to unpack .../100-libsnappy-jni_1.1.10.5-1_arm64.deb ... 2789s Unpacking libsnappy-jni (1.1.10.5-1) ... 2789s Selecting previously unselected package libsnappy-java. 2789s Preparing to unpack .../101-libsnappy-java_1.1.10.5-1_all.deb ... 2789s Unpacking libsnappy-java (1.1.10.5-1) ... 2789s Selecting previously unselected package libhtsjdk-java. 2789s Preparing to unpack .../102-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 2789s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 2789s Selecting previously unselected package libfindbin-libs-perl. 2790s Preparing to unpack .../103-libfindbin-libs-perl_3.0.2-1_all.deb ... 2790s Unpacking libfindbin-libs-perl (3.0.2-1) ... 2790s Selecting previously unselected package libargs4j-java. 2790s Preparing to unpack .../104-libargs4j-java_2.33-2_all.deb ... 2790s Unpacking libargs4j-java (2.33-2) ... 2790s Selecting previously unselected package libcommons-io-java. 2790s Preparing to unpack .../105-libcommons-io-java_2.11.0-2_all.deb ... 2790s Unpacking libcommons-io-java (2.11.0-2) ... 2790s Selecting previously unselected package libcommons-lang3-java. 2790s Preparing to unpack .../106-libcommons-lang3-java_3.14.0-1_all.deb ... 2790s Unpacking libcommons-lang3-java (3.14.0-1) ... 2790s Selecting previously unselected package libsis-base-jni. 2790s Preparing to unpack .../107-libsis-base-jni_18.09~pre1+git20180928.45fbd31+dfsg-3_arm64.deb ... 2790s Unpacking libsis-base-jni (18.09~pre1+git20180928.45fbd31+dfsg-3) ... 2790s Selecting previously unselected package libsis-base-java. 2790s Preparing to unpack .../108-libsis-base-java_18.09~pre1+git20180928.45fbd31+dfsg-3_all.deb ... 2790s Unpacking libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... 2790s Selecting previously unselected package libaec0:arm64. 2790s Preparing to unpack .../109-libaec0_1.1.2-1_arm64.deb ... 2790s Unpacking libaec0:arm64 (1.1.2-1) ... 2790s Selecting previously unselected package libsz2:arm64. 2790s Preparing to unpack .../110-libsz2_1.1.2-1_arm64.deb ... 2790s Unpacking libsz2:arm64 (1.1.2-1) ... 2790s Selecting previously unselected package libhdf5-103-1:arm64. 2790s Preparing to unpack .../111-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 2790s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 2790s Selecting previously unselected package libsis-jhdf5-jni. 2790s Preparing to unpack .../112-libsis-jhdf5-jni_19.04.1+dfsg-4_arm64.deb ... 2790s Unpacking libsis-jhdf5-jni (19.04.1+dfsg-4) ... 2790s Selecting previously unselected package libsis-jhdf5-java. 2790s Preparing to unpack .../113-libsis-jhdf5-java_19.04.1+dfsg-4_all.deb ... 2790s Unpacking libsis-jhdf5-java (19.04.1+dfsg-4) ... 2790s Selecting previously unselected package fastqc. 2790s Preparing to unpack .../114-fastqc_0.12.1+dfsg-3_all.deb ... 2790s Unpacking fastqc (0.12.1+dfsg-3) ... 2790s Selecting previously unselected package unzip. 2790s Preparing to unpack .../115-unzip_6.0-28ubuntu3_arm64.deb ... 2790s Unpacking unzip (6.0-28ubuntu3) ... 2791s Selecting previously unselected package autopkgtest-satdep. 2791s Preparing to unpack .../116-4-autopkgtest-satdep.deb ... 2791s Unpacking autopkgtest-satdep (0) ... 2791s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 2791s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 2791s Setting up liblcms2-2:arm64 (2.14-2) ... 2791s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 2791s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 2791s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 2791s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 2791s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 2791s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 2791s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2791s Setting up hicolor-icon-theme (0.17-2) ... 2791s Setting up libxi6:arm64 (2:1.8.1-1) ... 2791s Setting up java-common (0.75+exp1) ... 2791s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 2791s Setting up libdatrie1:arm64 (0.2.13-3) ... 2791s Setting up libxcb-render0:arm64 (1.15-1) ... 2791s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 2791s Setting up libglvnd0:arm64 (1.7.0-1) ... 2791s Setting up libmjson-java (1.4.0-3) ... 2791s Setting up libxcb-glx0:arm64 (1.15-1) ... 2791s Setting up unzip (6.0-28ubuntu3) ... 2791s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 2791s Setting up x11-common (1:7.7+23ubuntu2) ... 2792s Setting up libdeflate0:arm64 (1.19-1) ... 2792s Setting up libxcb-shm0:arm64 (1.15-1) ... 2792s Setting up libfindbin-libs-perl (3.0.2-1) ... 2792s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 2792s Setting up libaec0:arm64 (1.1.2-1) ... 2792s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 2792s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 2792s Setting up libxcb-present0:arm64 (1.15-1) ... 2792s Setting up libasound2-data (1.2.10-3build1) ... 2792s Setting up libsis-base-jni (18.09~pre1+git20180928.45fbd31+dfsg-3) ... 2792s Setting up librhino-java (1.7.14-2.1) ... 2792s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 2792s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 2792s Setting up libxcb-sync1:arm64 (1.15-1) ... 2792s Setting up libapache-pom-java (29-2) ... 2792s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 2792s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 2792s Setting up fonts-dejavu-mono (2.37-8) ... 2792s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 2792s Setting up fonts-dejavu-core (2.37-8) ... 2792s Setting up libjbzip2-java (0.9.1-8) ... 2792s Setting up libpcsclite1:arm64 (2.0.0-1) ... 2792s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2792s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 2792s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 2792s Setting up libwebp7:arm64 (1.3.2-0.4) ... 2792s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 2792s Setting up libgif7:arm64 (5.2.1-2.5) ... 2792s Setting up libxshmfence1:arm64 (1.3-1build4) ... 2792s Setting up at-spi2-common (2.50.0-1) ... 2792s Setting up libxcb-randr0:arm64 (1.15-1) ... 2792s Setting up libasound2:arm64 (1.2.10-3build1) ... 2792s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 2792s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 2792s Setting up libthai-data (0.1.29-2) ... 2792s Setting up libcommons-math3-java (3.6.1-3) ... 2792s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 2792s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 2792s Setting up ca-certificates-java (20240118) ... 2792s No JRE found. Skipping Java certificates setup. 2792s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 2792s Setting up libsnappy-jni (1.1.10.5-1) ... 2792s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 2792s Setting up libargs4j-java (2.33-2) ... 2792s Setting up libsz2:arm64 (1.1.2-1) ... 2792s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 2792s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 2792s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 2792s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 2792s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 2792s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 2792s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 2792s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 2792s Setting up libcommons-parent-java (56-1) ... 2792s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 2792s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 2792s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 2792s Setting up libcommons-jexl2-java (2.1.1-6) ... 2792s Setting up libthai0:arm64 (0.1.29-2) ... 2792s Setting up libcommons-lang3-java (3.14.0-1) ... 2792s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 2792s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2792s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 2792s Setting up libsis-jhdf5-jni (19.04.1+dfsg-4) ... 2792s Setting up libsnappy-java (1.1.10.5-1) ... 2792s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2792s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 2792s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 2792s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 2792s Setting up fontconfig (2.15.0-1ubuntu1) ... 2795s Regenerating fonts cache... done. 2795s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 2795s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 2795s Setting up libglx0:arm64 (1.7.0-1) ... 2795s Setting up libcommons-compress-java (1.25.0-1) ... 2795s Setting up libcommons-io-java (2.11.0-2) ... 2795s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2795s Setting up libcairo2:arm64 (1.18.0-1) ... 2795s Setting up libgl1:arm64 (1.7.0-1) ... 2795s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 2795s Setting up libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... 2795s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 2795s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2795s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 2795s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2795s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 2795s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 2795s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 2795s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 2795s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 2795s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 2795s Setting up libsis-jhdf5-java (19.04.1+dfsg-4) ... 2795s Setting up adwaita-icon-theme (46~rc-1) ... 2795s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 2795s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 2795s Setting up humanity-icon-theme (0.6.16) ... 2795s Setting up ubuntu-mono (24.04-0ubuntu1) ... 2795s Processing triggers for man-db (2.12.0-3) ... 2797s Processing triggers for libc-bin (2.39-0ubuntu6) ... 2797s Processing triggers for ca-certificates-java (20240118) ... 2798s Adding debian:ACCVRAIZ1.pem 2798s Adding debian:AC_RAIZ_FNMT-RCM.pem 2798s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 2798s Adding debian:ANF_Secure_Server_Root_CA.pem 2798s Adding debian:Actalis_Authentication_Root_CA.pem 2798s Adding debian:AffirmTrust_Commercial.pem 2798s Adding debian:AffirmTrust_Networking.pem 2798s Adding debian:AffirmTrust_Premium.pem 2798s Adding debian:AffirmTrust_Premium_ECC.pem 2798s Adding debian:Amazon_Root_CA_1.pem 2798s Adding debian:Amazon_Root_CA_2.pem 2798s Adding debian:Amazon_Root_CA_3.pem 2798s Adding debian:Amazon_Root_CA_4.pem 2798s Adding debian:Atos_TrustedRoot_2011.pem 2798s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 2798s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 2798s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 2798s Adding debian:BJCA_Global_Root_CA1.pem 2798s Adding debian:BJCA_Global_Root_CA2.pem 2798s Adding debian:Baltimore_CyberTrust_Root.pem 2798s Adding debian:Buypass_Class_2_Root_CA.pem 2798s Adding debian:Buypass_Class_3_Root_CA.pem 2798s Adding debian:CA_Disig_Root_R2.pem 2798s Adding debian:CFCA_EV_ROOT.pem 2798s Adding debian:COMODO_Certification_Authority.pem 2798s Adding debian:COMODO_ECC_Certification_Authority.pem 2798s Adding debian:COMODO_RSA_Certification_Authority.pem 2798s Adding debian:Certainly_Root_E1.pem 2798s Adding debian:Certainly_Root_R1.pem 2798s Adding debian:Certigna.pem 2798s Adding debian:Certigna_Root_CA.pem 2798s Adding debian:Certum_EC-384_CA.pem 2798s Adding debian:Certum_Trusted_Network_CA.pem 2798s Adding debian:Certum_Trusted_Network_CA_2.pem 2798s Adding debian:Certum_Trusted_Root_CA.pem 2798s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 2798s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 2798s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 2798s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 2798s Adding debian:Comodo_AAA_Services_root.pem 2798s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 2798s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 2798s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 2798s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 2798s Adding debian:DigiCert_Assured_ID_Root_CA.pem 2798s Adding debian:DigiCert_Assured_ID_Root_G2.pem 2798s Adding debian:DigiCert_Assured_ID_Root_G3.pem 2798s Adding debian:DigiCert_Global_Root_CA.pem 2798s Adding debian:DigiCert_Global_Root_G2.pem 2798s Adding debian:DigiCert_Global_Root_G3.pem 2798s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 2798s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 2798s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 2798s Adding debian:DigiCert_Trusted_Root_G4.pem 2798s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 2798s Adding debian:Entrust_Root_Certification_Authority.pem 2798s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 2798s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 2798s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 2798s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 2798s Adding debian:GLOBALTRUST_2020.pem 2798s Adding debian:GTS_Root_R1.pem 2798s Adding debian:GTS_Root_R2.pem 2798s Adding debian:GTS_Root_R3.pem 2798s Adding debian:GTS_Root_R4.pem 2798s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 2798s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 2798s Adding debian:GlobalSign_Root_CA.pem 2798s Adding debian:GlobalSign_Root_CA_-_R3.pem 2798s Adding debian:GlobalSign_Root_CA_-_R6.pem 2798s Adding debian:GlobalSign_Root_E46.pem 2798s Adding debian:GlobalSign_Root_R46.pem 2798s Adding debian:Go_Daddy_Class_2_CA.pem 2798s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 2798s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 2798s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 2798s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 2798s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 2798s Adding debian:HiPKI_Root_CA_-_G1.pem 2798s Adding debian:Hongkong_Post_Root_CA_3.pem 2798s Adding debian:ISRG_Root_X1.pem 2798s Adding debian:ISRG_Root_X2.pem 2798s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 2798s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 2798s Adding debian:Izenpe.com.pem 2798s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 2798s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 2798s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 2799s Adding debian:NAVER_Global_Root_Certification_Authority.pem 2799s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 2799s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 2799s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 2799s Adding debian:QuoVadis_Root_CA_1_G3.pem 2799s Adding debian:QuoVadis_Root_CA_2.pem 2799s Adding debian:QuoVadis_Root_CA_2_G3.pem 2799s Adding debian:QuoVadis_Root_CA_3.pem 2799s Adding debian:QuoVadis_Root_CA_3_G3.pem 2799s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 2799s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 2799s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 2799s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 2799s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 2799s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 2799s Adding debian:SZAFIR_ROOT_CA2.pem 2799s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 2799s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 2799s Adding debian:SecureSign_RootCA11.pem 2799s Adding debian:SecureTrust_CA.pem 2799s Adding debian:Secure_Global_CA.pem 2799s Adding debian:Security_Communication_ECC_RootCA1.pem 2799s Adding debian:Security_Communication_RootCA2.pem 2799s Adding debian:Security_Communication_RootCA3.pem 2799s Adding debian:Security_Communication_Root_CA.pem 2799s Adding debian:Starfield_Class_2_CA.pem 2799s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 2799s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 2799s Adding debian:SwissSign_Gold_CA_-_G2.pem 2799s Adding debian:SwissSign_Silver_CA_-_G2.pem 2799s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 2799s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 2799s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 2799s Adding debian:TWCA_Global_Root_CA.pem 2799s Adding debian:TWCA_Root_Certification_Authority.pem 2799s Adding debian:TeliaSonera_Root_CA_v1.pem 2799s Adding debian:Telia_Root_CA_v2.pem 2799s Adding debian:TrustAsia_Global_Root_CA_G3.pem 2799s Adding debian:TrustAsia_Global_Root_CA_G4.pem 2799s Adding debian:Trustwave_Global_Certification_Authority.pem 2799s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 2799s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 2799s Adding debian:TunTrust_Root_CA.pem 2799s Adding debian:UCA_Extended_Validation_Root.pem 2799s Adding debian:UCA_Global_G2_Root.pem 2799s Adding debian:USERTrust_ECC_Certification_Authority.pem 2799s Adding debian:USERTrust_RSA_Certification_Authority.pem 2799s Adding debian:XRamp_Global_CA_Root.pem 2799s Adding debian:certSIGN_ROOT_CA.pem 2799s Adding debian:certSIGN_Root_CA_G2.pem 2799s Adding debian:e-Szigno_Root_CA_2017.pem 2799s Adding debian:ePKI_Root_Certification_Authority.pem 2799s Adding debian:emSign_ECC_Root_CA_-_C3.pem 2799s Adding debian:emSign_ECC_Root_CA_-_G3.pem 2799s Adding debian:emSign_Root_CA_-_C1.pem 2799s Adding debian:emSign_Root_CA_-_G1.pem 2799s Adding debian:vTrus_ECC_Root_CA.pem 2799s Adding debian:vTrus_Root_CA.pem 2799s done. 2799s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 2799s Setting up default-jre-headless (2:1.21-75+exp1) ... 2799s Setting up default-jre (2:1.21-75+exp1) ... 2799s Setting up fastqc (0.12.1+dfsg-3) ... 2799s Setting up autopkgtest-satdep (0) ... 2809s (Reading database ... 89646 files and directories currently installed.) 2809s Removing autopkgtest-satdep (0) ... 2823s autopkgtest [18:13:35]: test fastqc-run-unit-test: [----------------------- 2823s null 2823s Started analysis of example.fastq 2823s Analysis complete for example.fastq 2830s Summary results match for: fastqc example.fastq 2830s 2834s Started analysis of toy_sam.sam 2834s Analysis complete for toy_sam.sam 2837s Summary results match for: fastqc toy_sam.sam 2837s 2837s Started analysis of toy_bam.bam 2837s Analysis complete for toy_bam.bam 2843s Summary results match for: fastqc toy_bam.bam 2843s 2843s PASS 2844s autopkgtest [18:13:58]: test fastqc-run-unit-test: -----------------------] 2844s autopkgtest [18:13:58]: test fastqc-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 2844s fastqc-run-unit-test PASS 2845s autopkgtest [18:13:59]: test jalview-run-unit-test: preparing testbed 2979s autopkgtest [18:16:13]: testbed dpkg architecture: arm64 2979s autopkgtest [18:16:13]: testbed apt version: 2.7.12 2979s autopkgtest [18:16:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 2980s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 2981s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 2981s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 2981s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 2981s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 2982s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [710 kB] 2982s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 2982s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 2982s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 2982s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 2983s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 2983s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 2983s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 2991s Fetched 9851 kB in 5s (1974 kB/s) 2992s Reading package lists... 2997s Reading package lists... 2998s Building dependency tree... 2998s Reading state information... 3004s Calculating upgrade... 3004s The following packages will be REMOVED: 3004s libssl3 3004s The following NEW packages will be installed: 3004s libssl3t64 3004s The following packages have been kept back: 3004s curl 3004s The following packages will be upgraded: 3004s openssl 3004s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 3004s Need to get 2777 kB of archives. 3004s After this operation, 139 kB of additional disk space will be used. 3004s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 3004s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 3004s Fetched 2777 kB in 1s (3542 kB/s) 3004s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 3004s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 3004s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 3004s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 3004s wget depends on libssl3 (>= 3.0.0). 3004s u-boot-tools depends on libssl3 (>= 3.0.0). 3004s tnftp depends on libssl3 (>= 3.0.0). 3004s tcpdump depends on libssl3 (>= 3.0.0). 3004s systemd-resolved depends on libssl3 (>= 3.0.0). 3004s systemd depends on libssl3 (>= 3.0.0). 3004s sudo depends on libssl3 (>= 3.0.0). 3004s sbsigntool depends on libssl3 (>= 3.0.0). 3004s rsync depends on libssl3 (>= 3.0.0). 3004s python3-cryptography depends on libssl3 (>= 3.0.0). 3004s openssh-server depends on libssl3 (>= 3.0.10). 3004s openssh-client depends on libssl3 (>= 3.0.10). 3004s mtd-utils depends on libssl3 (>= 3.0.0). 3004s mokutil depends on libssl3 (>= 3.0.0). 3004s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 3004s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 3004s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 3004s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 3004s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 3004s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 3004s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 3004s libnvme1 depends on libssl3 (>= 3.0.0). 3004s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 3004s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 3004s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 3004s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 3004s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 3004s kmod depends on libssl3 (>= 3.0.0). 3004s dhcpcd-base depends on libssl3 (>= 3.0.0). 3004s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 3004s 3004s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 3004s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 3004s Selecting previously unselected package libssl3t64:arm64. 3004s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 3004s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 3004s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 3004s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 3004s Setting up openssl (3.0.13-0ubuntu2) ... 3004s Processing triggers for man-db (2.12.0-3) ... 3005s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3006s Reading package lists... 3007s Building dependency tree... 3007s Reading state information... 3008s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 3010s sh: Attempting to set up Debian/Ubuntu apt sources automatically 3010s sh: Distribution appears to be Ubuntu 3013s Reading package lists... 3013s Building dependency tree... 3013s Reading state information... 3016s eatmydata is already the newest version (131-1). 3016s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3016s Reading package lists... 3016s Building dependency tree... 3016s Reading state information... 3016s dbus is already the newest version (1.14.10-4ubuntu1). 3016s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3017s Reading package lists... 3017s Building dependency tree... 3017s Reading state information... 3019s rng-tools-debian is already the newest version (2.4). 3019s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3019s Reading package lists... 3019s Building dependency tree... 3019s Reading state information... 3020s The following packages will be REMOVED: 3020s cloud-init* python3-configobj* python3-debconf* 3021s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 3021s After this operation, 3256 kB disk space will be freed. 3022s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 3022s Removing cloud-init (24.1.2-0ubuntu1) ... 3024s Removing python3-configobj (5.0.8-3) ... 3024s Removing python3-debconf (1.5.86) ... 3024s Processing triggers for man-db (2.12.0-3) ... 3025s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 3025s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 3028s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 3028s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 3028s invoke-rc.d: policy-rc.d denied execution of try-restart. 3028s Reading package lists... 3028s Building dependency tree... 3028s Reading state information... 3030s linux-generic is already the newest version (6.8.0-11.11+1). 3030s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3031s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 3031s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 3031s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 3039s Reading package lists... 3039s Reading package lists... 3040s Building dependency tree... 3040s Reading state information... 3041s Calculating upgrade... 3042s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3042s Reading package lists... 3043s Building dependency tree... 3043s Reading state information... 3044s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3045s autopkgtest [18:17:19]: rebooting testbed after setup commands that affected boot 3223s Reading package lists... 3223s Building dependency tree... 3224s Reading state information... 3224s Starting pkgProblemResolver with broken count: 0 3225s Starting 2 pkgProblemResolver with broken count: 0 3225s Done 3226s The following additional packages will be installed: 3226s adwaita-icon-theme ant ant-optional antlr at-spi2-common 3226s ca-certificates-java default-jre default-jre-headless fontconfig 3226s fontconfig-config fonts-dejavu-core fonts-dejavu-mono groovy 3226s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ivy jalview 3226s java-common javahelp2 junit4 libactivation-java libandroid-json-org-java 3226s libantlr-java libantlr4-runtime-java libaopalliance-java 3226s libapache-mime4j-java libapache-pom-java libapfloat-java libargs4j-java 3226s libasm-java libasound2 libasound2-data libatinject-jsr330-api-java 3226s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 3226s libaxis-java libbiojava6-java libbsf-java libcairo2 libcastor-core-java 3226s libcastor-xml-java libcdi-api-java libciftools-java libcodemodel-java 3226s libcommons-cli-java libcommons-codec-java libcommons-compress-java 3226s libcommons-discovery-java libcommons-exec-java libcommons-httpclient-java 3226s libcommons-io-java libcommons-jexl2-java libcommons-lang-java 3226s libcommons-lang3-java libcommons-logging-java libcommons-math-java 3226s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 3226s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 3226s libdtd-parser-java libel-api-java liberror-prone-java 3226s libexec-maven-plugin-java libfastinfoset-java libfastutil-java 3226s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 3226s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 3226s libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 3226s libgmbal-commons-java libgmbal-java libgmbal-pfl-java libgoogle-gson-java 3226s libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java 3226s libhamcrest-java libharfbuzz0b libhawtjni-runtime-java libhtsjdk-java 3226s libhttpclient-java libhttpcore-java libhttpmime-java libinchi1 3226s libintervalstorej-java libisorelax-java libistack-commons-java 3226s libitext5-java libjaba-client-java libjackson2-annotations-java 3226s libjackson2-core-java libjackson2-databind-java libjansi-java 3226s libjansi-native-java libjansi1-java libjaxb-api-java libjaxb-java 3226s libjaxen-java libjaxrs-api-java libjaxws-api-java libjaxws-java libjbig0 3226s libjersey1-client-java libjersey1-core-java libjetty9-java libjfreesvg-java 3226s libjgrapht-java libjgraphx-java libjheaps-java libjline2-java libjmol-java 3226s libjni-inchi-java libjni-inchi-jni libjpeg-turbo8 libjpeg8 3226s libjson-simple-java libjsoup-java libjsp-api-java libjsr305-java 3226s libjsr311-api-java libjswingreader-java libjws-api-java 3226s libknopflerfish-osgi-framework-java liblcms2-2 liblerc4 liblightcouch-java 3226s libllvm17 liblog4j1.2-java liblog4j2-java libmail-java 3226s libmaven-archiver-java libmaven-compiler-plugin-java 3226s libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java 3226s libmaven-resolver-java libmaven-shared-incremental-java 3226s libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java 3226s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmetro-policy-java 3226s libmiglayout-java libmimepull-java libmjson-java libmmtf-java 3226s libmongodb-java libmsgpack-java libmsv-java libnaga-java libncbi-ngs3 3226s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 3226s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 libplexus-archiver-java 3226s libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java 3226s libplexus-component-annotations-java libplexus-container-default-java 3226s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 3226s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox-java 3226s libqdox2-java librelaxng-datatype-java librhino-java librngom-java 3226s libsaaj-java libsaaj-ri-java libservlet-api-java libsharpyuv0 3226s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 3226s libsnappy-jni libsnappy1v5 libstax-ex-java libstax2-api-java 3226s libstreambuffer-java libthai-data libthai0 libtiff6 libtxw2-java 3226s libvamsas-client-java libvecmath-java libvulkan1 libwagon-http-java 3226s libwagon-provider-api-java libwebp7 libwebsocket-api-java libwoodstox-java 3226s libwsdl4j-java libx11-xcb1 libxbean-reflect-java libxcb-dri2-0 libxcb-dri3-0 3226s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 3226s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 3226s libxerces2-java libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 3226s libxml-commons-resolver1.1-java libxpp3-java libxrandr2 libxrender1 3226s libxshmfence1 libxsom-java libxstream-java libxtst6 libxxf86vm1 libxz-java 3226s ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless ubuntu-mono varna 3226s x11-common 3226s Suggested packages: 3226s ant-doc default-jdk | java-compiler | java-sdk javacc junit jython 3226s libbcel-java libcommons-net-java libjaxp1.3-java libjdepend-java 3226s libjsch-java liboro-java libregexp-java libxalan2-java groovy-doc ivy-doc 3226s libbcpg-java libbcprov-java libjsch-agent-proxy-java clustalw kalign 3226s t-coffee javahelp2-doc libandroid-json-org-java-doc libasound2-plugins 3226s alsa-utils libatinject-jsr330-api-java-doc libaxis-java-doc 3226s libbiojava6-java-doc bsh rhino libcastor-java-doc 3226s libcommons-httpclient-java-doc libcommons-io-java-doc 3226s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 3226s cups-common libxpp2-java libgoogle-gson-java-doc gvfs libcglib-java 3226s picard-tools libbcpkix-java libxml-security-java 3226s libjackson2-annotations-java-doc libjdom1-java libxom-java jetty9 3226s libjfreesvg-java-doc libjmol-java-doc libjson-simple-doc libjsoup-java-doc 3226s libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc libcommons-csv-java 3226s libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java 3226s libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjctools-java 3226s libjeromq-java libmail-java-doc libmaven-file-management-java-doc 3226s libmaven-shared-incremental-java-doc libmaven-shared-utils-java-doc 3226s liblogback-java libswt-gtk-4-java libmmtf-java-doc libngs-java-doc pcscd 3226s libeclipse-jdt-core-java libplexus-utils2-java-doc libqdox-java-doc testng 3226s libxerces2-java-doc libxml-commons-resolver1.1-java-doc libcglib-nodep-java 3226s libjdom2-java libjettison-java libjoda-time-java libkxml2-java libnss-mdns 3226s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 3226s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 3226s Recommended packages: 3226s librsvg2-common libgpars-groovy-java libjcommander-java alsa-ucm-conf 3226s alsa-topology-conf liboro-java libregexp-java libgdk-pixbuf2.0-bin 3226s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 3226s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 3226s The following NEW packages will be installed: 3226s adwaita-icon-theme ant ant-optional antlr at-spi2-common autopkgtest-satdep 3226s ca-certificates-java default-jre default-jre-headless fontconfig 3226s fontconfig-config fonts-dejavu-core fonts-dejavu-mono groovy 3226s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ivy jalview 3226s java-common javahelp2 junit4 libactivation-java libandroid-json-org-java 3226s libantlr-java libantlr4-runtime-java libaopalliance-java 3226s libapache-mime4j-java libapache-pom-java libapfloat-java libargs4j-java 3226s libasm-java libasound2 libasound2-data libatinject-jsr330-api-java 3226s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 3226s libaxis-java libbiojava6-java libbsf-java libcairo2 libcastor-core-java 3226s libcastor-xml-java libcdi-api-java libciftools-java libcodemodel-java 3226s libcommons-cli-java libcommons-codec-java libcommons-compress-java 3226s libcommons-discovery-java libcommons-exec-java libcommons-httpclient-java 3226s libcommons-io-java libcommons-jexl2-java libcommons-lang-java 3226s libcommons-lang3-java libcommons-logging-java libcommons-math-java 3226s libcommons-parent-java libcommons-text-java libcups2 libdatrie1 libdeflate0 3226s libdom4j-java libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 3226s libdtd-parser-java libel-api-java liberror-prone-java 3226s libexec-maven-plugin-java libfastinfoset-java libfastutil-java 3226s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 3226s libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java 3226s libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 3226s libgmbal-commons-java libgmbal-java libgmbal-pfl-java libgoogle-gson-java 3226s libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java 3226s libhamcrest-java libharfbuzz0b libhawtjni-runtime-java libhtsjdk-java 3226s libhttpclient-java libhttpcore-java libhttpmime-java libinchi1 3226s libintervalstorej-java libisorelax-java libistack-commons-java 3226s libitext5-java libjaba-client-java libjackson2-annotations-java 3226s libjackson2-core-java libjackson2-databind-java libjansi-java 3226s libjansi-native-java libjansi1-java libjaxb-api-java libjaxb-java 3226s libjaxen-java libjaxrs-api-java libjaxws-api-java libjaxws-java libjbig0 3226s libjersey1-client-java libjersey1-core-java libjetty9-java libjfreesvg-java 3226s libjgrapht-java libjgraphx-java libjheaps-java libjline2-java libjmol-java 3226s libjni-inchi-java libjni-inchi-jni libjpeg-turbo8 libjpeg8 3226s libjson-simple-java libjsoup-java libjsp-api-java libjsr305-java 3226s libjsr311-api-java libjswingreader-java libjws-api-java 3226s libknopflerfish-osgi-framework-java liblcms2-2 liblerc4 liblightcouch-java 3226s libllvm17 liblog4j1.2-java liblog4j2-java libmail-java 3226s libmaven-archiver-java libmaven-compiler-plugin-java 3226s libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java 3226s libmaven-resolver-java libmaven-shared-incremental-java 3226s libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java 3226s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmetro-policy-java 3226s libmiglayout-java libmimepull-java libmjson-java libmmtf-java 3226s libmongodb-java libmsgpack-java libmsv-java libnaga-java libncbi-ngs3 3226s libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 3226s libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 libplexus-archiver-java 3226s libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java 3226s libplexus-component-annotations-java libplexus-container-default-java 3226s libplexus-interpolation-java libplexus-io-java libplexus-languages-java 3226s libplexus-sec-dispatcher-java libplexus-utils2-java libqdox-java 3226s libqdox2-java librelaxng-datatype-java librhino-java librngom-java 3226s libsaaj-java libsaaj-ri-java libservlet-api-java libsharpyuv0 3226s libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java 3226s libsnappy-jni libsnappy1v5 libstax-ex-java libstax2-api-java 3226s libstreambuffer-java libthai-data libthai0 libtiff6 libtxw2-java 3226s libvamsas-client-java libvecmath-java libvulkan1 libwagon-http-java 3226s libwagon-provider-api-java libwebp7 libwebsocket-api-java libwoodstox-java 3226s libwsdl4j-java libx11-xcb1 libxbean-reflect-java libxcb-dri2-0 libxcb-dri3-0 3226s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 3226s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 3226s libxerces2-java libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 3226s libxml-commons-resolver1.1-java libxpp3-java libxrandr2 libxrender1 3226s libxshmfence1 libxsom-java libxstream-java libxtst6 libxxf86vm1 libxz-java 3226s ncbi-vdb-data openjdk-21-jre openjdk-21-jre-headless ubuntu-mono varna 3226s x11-common 3227s 0 upgraded, 258 newly installed, 0 to remove and 0 not upgraded. 3227s Need to get 211 MB/211 MB of archives. 3227s After this operation, 605 MB of additional disk space will be used. 3227s Get:1 /tmp/autopkgtest.w2H4x5/5-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 3227s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 3227s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 3227s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 3227s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 3227s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 3227s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 3227s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 3227s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 3227s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 3227s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 3227s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 3227s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 3227s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 3227s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 3227s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 3227s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 3227s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 3227s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 3227s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 3227s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 3228s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 3228s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 3228s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 3228s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 3228s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 3228s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 3228s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 3228s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 3228s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 3228s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 3228s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 3228s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 3230s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 3230s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 ant all 1.10.14-1 [2147 kB] 3230s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 ant-optional all 1.10.14-1 [451 kB] 3230s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr-java all 2.7.7+dfsg-13 [452 kB] 3230s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 antlr all 2.7.7+dfsg-13 [5154 B] 3230s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 3230s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 3230s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 3230s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 3230s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 3230s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 3230s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 3230s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 3230s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 3230s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 3230s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 3230s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 3230s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 3230s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 3230s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 3230s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 3230s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 3230s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 3230s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 3230s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 3230s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 3230s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 3230s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 3230s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 3230s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 3230s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 3230s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 3230s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 3230s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 3230s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 3230s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 3230s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 3230s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 3230s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 3230s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 3230s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 3231s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 3231s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 3231s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 3231s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 3232s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 3232s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 3232s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 3232s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 3232s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 3232s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 3232s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 3232s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 3232s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 3232s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 ivy all 2.5.2-1 [1286 kB] 3232s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libhamcrest-java all 2.2-2 [117 kB] 3232s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 junit4 all 4.13.2-4 [347 kB] 3232s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libasm-java all 9.6~us1-0ubuntu1 [386 kB] 3232s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libbsf-java all 1:2.4.0-8 [73.6 kB] 3232s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-cli-java all 1.6.0-1 [59.9 kB] 3232s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 3232s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 3232s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 3232s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi-java all 2.4.1-2 [83.0 kB] 3232s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libhawtjni-runtime-java all 1.18-1 [28.9 kB] 3232s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi-native-java all 1.8-2 [24.1 kB] 3232s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjansi1-java all 1.18-3ubuntu1 [56.0 kB] 3232s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjline2-java all 2.14.6-5 [150 kB] 3232s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsp-api-java all 2.3.4-3 [53.7 kB] 3232s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libqdox-java all 1.12.1-3 [172 kB] 3233s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libservlet-api-java all 4.0.1-2 [81.0 kB] 3233s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libxpp3-java all 1.1.4c-3 [292 kB] 3233s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libxstream-java all 1.4.20-1 [561 kB] 3233s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 groovy all 2.4.21-10 [10.8 MB] 3241s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-discovery-java all 0.5-4 [70.8 kB] 3241s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libactivation-java all 1.2.0-2 [84.7 kB] 3241s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-api-java all 2.3.1-1 [119 kB] 3241s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libstax-ex-java all 1.7.8-3 [40.9 kB] 3241s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] 3241s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.8 kB] 3241s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libxsom-java all 2.3.0.1-10.1 [397 kB] 3241s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastinfoset-java all 1.2.12-3 [343 kB] 3241s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.2 kB] 3241s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-commons-java all 3.2.1-b003-1.1 [46.6 kB] 3241s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-pfl-java all 4.0.1-b003-2 [1029 kB] 3241s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libgmbal-java all 4.0.0-b002-1.1 [188 kB] 3241s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libargs4j-java all 2.33-2 [137 kB] 3241s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxen-java all 1.1.6-4 [214 kB] 3241s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 libdom4j-java all 2.1.4-1 [310 kB] 3241s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 3241s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-utils-java all 3.3.4-1 [137 kB] 3241s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] 3241s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 3241s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libaopalliance-java all 20070526-7 [8166 B] 3241s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] 3241s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] 3241s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libguava-java all 32.0.1-1 [2692 kB] 3241s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libguice-java all 4.2.3-2 [1434 kB] 3241s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-parent-java all 35-1 [5810 B] 3241s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-utils2-java all 3.4.2-1 [256 kB] 3241s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-provider-api-java all 3.5.3-1 [47.9 kB] 3241s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-resolver-java all 1.6.3-1 [544 kB] 3241s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-cipher-java all 2.0-1 [14.7 kB] 3241s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-classworlds-java all 2.7.0-1 [50.0 kB] 3241s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-component-annotations-java all 2.1.1-1 [6550 B] 3241s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-interpolation-java all 1.26-1 [76.8 kB] 3241s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-sec-dispatcher-java all 2.0-3 [28.1 kB] 3241s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4fakesync [8616 B] 3241s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 libcdi-api-java all 1.2-3 [54.3 kB] 3241s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 3241s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-inject-java all 0.3.4-2 [347 kB] 3241s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 libsisu-plexus-java all 0.3.4-3 [181 kB] 3241s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven3-core-java all 3.8.7-2 [1565 kB] 3241s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-io-java all 3.0.0-4 [32.6 kB] 3241s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] 3241s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 3241s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-io-java all 3.3.1-2 [64.4 kB] 3241s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 3241s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 3241s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 3241s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libxz-java all 1.9-1 [140 kB] 3241s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-archiver-java all 4.6.1-1 [185 kB] 3241s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 3241s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 3241s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 3241s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsoup-java all 1.15.3-1 [407 kB] 3241s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 libwagon-http-java all 3.5.3-1 [48.8 kB] 3241s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 libistack-commons-java all 3.0.6-5 [145 kB] 3241s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 libcodemodel-java all 2.6+jaxb2.3.0.1-10.1 [164 kB] 3241s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 librngom-java all 2.3.0.1-10.1 [289 kB] 3241s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 libtxw2-java all 2.3.0.1-10.1 [133 kB] 3241s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 3241s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 libdtd-parser-java all 1.2-1 [64.9 kB] 3241s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxb-java all 2.3.0.1-10.1 [1967 kB] 3241s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 libsaaj-java all 1.4.0-4 [38.2 kB] 3241s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxws-api-java all 2.3.0-1.1 [49.9 kB] 3241s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 libjws-api-java all 1.1-2 [21.2 kB] 3241s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 libknopflerfish-osgi-framework-java all 6.1.1-3.1 [642 kB] 3241s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 libisorelax-java all 20041111-14 [63.4 kB] 3241s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 3241s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces2-java all 2.12.2-1 [1430 kB] 3241s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 libmsv-java all 2009.1+dfsg1-6 [760 kB] 3241s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 libstax2-api-java all 4.1-1 [152 kB] 3241s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libwoodstox-java all 1:6.2.1-1 [1122 kB] 3241s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libmetro-policy-java all 2.7.2-3ubuntu1 [171 kB] 3241s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 libmimepull-java all 1.9.7-2 [66.9 kB] 3241s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 libsaaj-ri-java all 1.4.1-1.1 [461 kB] 3241s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxws-java all 2.3.0.2-2 [3046 kB] 3241s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 javahelp2 all 2.0.05.ds1-10 [942 kB] 3241s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 libandroid-json-org-java all 20121204-20090211-5 [35.9 kB] 3241s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-mime4j-java all 0.8.10-1 [442 kB] 3241s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-httpclient-java all 3.1-16 [289 kB] 3241s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libmail-java all 1.6.5-2 [681 kB] 3241s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libwsdl4j-java all 1.6.3-4.1 [184 kB] 3241s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 libaxis-java all 1.4-29 [1499 kB] 3241s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 3241s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 libciftools-java all 5.0.2-1 [2191 kB] 3241s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math-java all 2.2-8 [921 kB] 3241s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 libitext5-java all 5.5.13.3-4 [2691 kB] 3241s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-annotations-java all 2.14.0-1 [64.7 kB] 3241s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-core-java all 2.14.1-1 [432 kB] 3241s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libjackson2-databind-java all 2.14.0-1 [1531 kB] 3241s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 libantlr4-runtime-java all 4.9.2-2 [308 kB] 3241s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libapfloat-java all 1.13.0-1 [698 kB] 3241s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-archiver-java all 3.6.0-1 [25.3 kB] 3241s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-jar-plugin-java all 3.3.0-2 [23.9 kB] 3241s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-text-java all 1.11.0-1 [215 kB] 3241s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] 3241s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 libjheaps-java all 0.14-2 [143 kB] 3241s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgraphx-java all 2.1.0.7-3 [801 kB] 3241s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 libjgrapht-java all 1.5.2-1 [1584 kB] 3241s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 libinchi1 arm64 1.03+dfsg-4 [448 kB] 3241s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-jni arm64 0.8+dfsg-7 [10.0 kB] 3241s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-exec-java all 1.3-2 [48.1 kB] 3241s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libexec-maven-plugin-java all 3.1.0-2 [66.1 kB] 3241s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-shared-incremental-java all 1.1-4 [9904 B] 3241s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 3241s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libxbean-reflect-java all 4.5-8 [132 kB] 3241s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-container-default-java all 2.1.1-1 [191 kB] 3241s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-compiler-java all 2.12.1-2 [98.4 kB] 3241s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 libqdox2-java all 2.0.3-1 [296 kB] 3241s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 libplexus-languages-java all 1.1.1-2 [46.8 kB] 3241s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaven-compiler-plugin-java all 3.10.1-2 [58.5 kB] 3241s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 3241s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 libjni-inchi-java all 0.8+dfsg-7 [32.3 kB] 3241s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 libnaga-java all 3.0+svn80-5 [43.5 kB] 3241s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 libjmol-java all 14.32.83+dfsg-3 [8469 kB] 3241s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 libjson-simple-java all 2.3.0-1 [61.0 kB] 3241s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 libmsgpack-java all 0.9.6-1 [159 kB] 3241s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 libmmtf-java all 1.0.11-1 [184 kB] 3241s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 libvecmath-java all 1.5.2-7 [96.9 kB] 3241s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 libbiojava6-java all 6.1.0+dfsg-4 [5330 kB] 3241s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 3241s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 3241s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 3241s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 3241s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 3241s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 3241s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 3241s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 3241s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 3241s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 3241s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 3241s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 3241s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpmime-java all 4.5.14-1 [39.6 kB] 3241s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libintervalstorej-java all 1.2+dfsg-5 [25.8 kB] 3241s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaba-client-java all 2.2.0-2 [400 kB] 3241s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxrs-api-java all 2.1.2-2 [115 kB] 3241s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr311-api-java all 1.1.1-1.1 [46.4 kB] 3241s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 libjersey1-core-java all 1.19.3-8 [390 kB] 3241s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 libjersey1-client-java all 1.19.3-8 [127 kB] 3241s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 libel-api-java all 3.0.0-3 [64.9 kB] 3241s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libwebsocket-api-java all 1.1-2 [40.1 kB] 3241s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 libjetty9-java all 9.4.53-1 [2807 kB] 3241s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 libjfreesvg-java all 4.1-2 [44.1 kB] 3241s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 libjswingreader-java all 0.3-4 [81.5 kB] 3241s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 3241s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 3241s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 3241s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 libmiglayout-java all 11.1+ds-1 [177 kB] 3241s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 libcastor-core-java all 1.3.2-7 [54.1 kB] 3241s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 libcastor-xml-java all 1.3.2-7 [735 kB] 3241s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 libvamsas-client-java all 0.2+dfsg-2 [583 kB] 3241s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 varna all 3-93+ds-5 [796 kB] 3241s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 jalview all 2.11.3.1+dfsg-1 [8735 kB] 3241s Preconfiguring packages ... 3242s Fetched 211 MB in 13s (16.5 MB/s) 3242s Selecting previously unselected package libgdk-pixbuf2.0-common. 3242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 3242s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 3242s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 3242s Selecting previously unselected package libjpeg-turbo8:arm64. 3242s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 3242s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 3242s Selecting previously unselected package libjpeg8:arm64. 3242s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 3242s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 3242s Selecting previously unselected package libdeflate0:arm64. 3242s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 3242s Unpacking libdeflate0:arm64 (1.19-1) ... 3242s Selecting previously unselected package libjbig0:arm64. 3242s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 3242s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 3242s Selecting previously unselected package liblerc4:arm64. 3242s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 3242s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 3242s Selecting previously unselected package libsharpyuv0:arm64. 3242s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 3242s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 3242s Selecting previously unselected package libwebp7:arm64. 3243s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 3243s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 3243s Selecting previously unselected package libtiff6:arm64. 3243s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 3243s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 3243s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 3243s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 3243s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 3243s Selecting previously unselected package gtk-update-icon-cache. 3243s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 3243s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 3243s Selecting previously unselected package hicolor-icon-theme. 3243s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 3243s Unpacking hicolor-icon-theme (0.17-2) ... 3243s Selecting previously unselected package humanity-icon-theme. 3243s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 3243s Unpacking humanity-icon-theme (0.6.16) ... 3247s Selecting previously unselected package ubuntu-mono. 3247s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 3247s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 3249s Selecting previously unselected package adwaita-icon-theme. 3249s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 3249s Unpacking adwaita-icon-theme (46~rc-1) ... 3249s Selecting previously unselected package ca-certificates-java. 3249s Preparing to unpack .../015-ca-certificates-java_20240118_all.deb ... 3249s Unpacking ca-certificates-java (20240118) ... 3250s Selecting previously unselected package java-common. 3250s Preparing to unpack .../016-java-common_0.75+exp1_all.deb ... 3250s Unpacking java-common (0.75+exp1) ... 3250s Selecting previously unselected package libavahi-common-data:arm64. 3250s Preparing to unpack .../017-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 3250s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 3250s Selecting previously unselected package libavahi-common3:arm64. 3250s Preparing to unpack .../018-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 3250s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 3250s Selecting previously unselected package libavahi-client3:arm64. 3250s Preparing to unpack .../019-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 3250s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 3250s Selecting previously unselected package libcups2:arm64. 3250s Preparing to unpack .../020-libcups2_2.4.6-0ubuntu3_arm64.deb ... 3250s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 3250s Selecting previously unselected package liblcms2-2:arm64. 3250s Preparing to unpack .../021-liblcms2-2_2.14-2_arm64.deb ... 3250s Unpacking liblcms2-2:arm64 (2.14-2) ... 3250s Selecting previously unselected package fonts-dejavu-mono. 3250s Preparing to unpack .../022-fonts-dejavu-mono_2.37-8_all.deb ... 3250s Unpacking fonts-dejavu-mono (2.37-8) ... 3250s Selecting previously unselected package fonts-dejavu-core. 3250s Preparing to unpack .../023-fonts-dejavu-core_2.37-8_all.deb ... 3250s Unpacking fonts-dejavu-core (2.37-8) ... 3250s Selecting previously unselected package fontconfig-config. 3250s Preparing to unpack .../024-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 3251s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 3251s Selecting previously unselected package libfontconfig1:arm64. 3251s Preparing to unpack .../025-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 3251s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 3251s Selecting previously unselected package libasound2-data. 3251s Preparing to unpack .../026-libasound2-data_1.2.10-3build1_all.deb ... 3251s Unpacking libasound2-data (1.2.10-3build1) ... 3251s Selecting previously unselected package libasound2:arm64. 3251s Preparing to unpack .../027-libasound2_1.2.10-3build1_arm64.deb ... 3251s Unpacking libasound2:arm64 (1.2.10-3build1) ... 3252s Selecting previously unselected package libgraphite2-3:arm64. 3252s Preparing to unpack .../028-libgraphite2-3_1.3.14-2_arm64.deb ... 3252s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 3252s Selecting previously unselected package libharfbuzz0b:arm64. 3252s Preparing to unpack .../029-libharfbuzz0b_8.3.0-2_arm64.deb ... 3252s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 3252s Selecting previously unselected package libpcsclite1:arm64. 3252s Preparing to unpack .../030-libpcsclite1_2.0.0-1_arm64.deb ... 3252s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 3252s Selecting previously unselected package openjdk-21-jre-headless:arm64. 3252s Preparing to unpack .../031-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 3252s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 3257s Selecting previously unselected package default-jre-headless. 3257s Preparing to unpack .../032-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 3257s Unpacking default-jre-headless (2:1.21-75+exp1) ... 3257s Selecting previously unselected package ant. 3257s Preparing to unpack .../033-ant_1.10.14-1_all.deb ... 3257s Unpacking ant (1.10.14-1) ... 3257s Selecting previously unselected package ant-optional. 3257s Preparing to unpack .../034-ant-optional_1.10.14-1_all.deb ... 3257s Unpacking ant-optional (1.10.14-1) ... 3257s Selecting previously unselected package libantlr-java. 3257s Preparing to unpack .../035-libantlr-java_2.7.7+dfsg-13_all.deb ... 3257s Unpacking libantlr-java (2.7.7+dfsg-13) ... 3257s Selecting previously unselected package antlr. 3257s Preparing to unpack .../036-antlr_2.7.7+dfsg-13_all.deb ... 3257s Unpacking antlr (2.7.7+dfsg-13) ... 3257s Selecting previously unselected package at-spi2-common. 3257s Preparing to unpack .../037-at-spi2-common_2.50.0-1_all.deb ... 3257s Unpacking at-spi2-common (2.50.0-1) ... 3257s Selecting previously unselected package libgtk2.0-common. 3257s Preparing to unpack .../038-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 3257s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 3257s Selecting previously unselected package libatk1.0-0:arm64. 3258s Preparing to unpack .../039-libatk1.0-0_2.50.0-1_arm64.deb ... 3258s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 3258s Selecting previously unselected package libpixman-1-0:arm64. 3258s Preparing to unpack .../040-libpixman-1-0_0.42.2-1_arm64.deb ... 3258s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 3258s Selecting previously unselected package libxcb-render0:arm64. 3258s Preparing to unpack .../041-libxcb-render0_1.15-1_arm64.deb ... 3258s Unpacking libxcb-render0:arm64 (1.15-1) ... 3258s Selecting previously unselected package libxcb-shm0:arm64. 3258s Preparing to unpack .../042-libxcb-shm0_1.15-1_arm64.deb ... 3258s Unpacking libxcb-shm0:arm64 (1.15-1) ... 3258s Selecting previously unselected package libxrender1:arm64. 3258s Preparing to unpack .../043-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 3258s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 3258s Selecting previously unselected package libcairo2:arm64. 3258s Preparing to unpack .../044-libcairo2_1.18.0-1_arm64.deb ... 3258s Unpacking libcairo2:arm64 (1.18.0-1) ... 3258s Selecting previously unselected package fontconfig. 3258s Preparing to unpack .../045-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 3258s Unpacking fontconfig (2.15.0-1ubuntu1) ... 3258s Selecting previously unselected package libthai-data. 3258s Preparing to unpack .../046-libthai-data_0.1.29-2_all.deb ... 3258s Unpacking libthai-data (0.1.29-2) ... 3258s Selecting previously unselected package libdatrie1:arm64. 3258s Preparing to unpack .../047-libdatrie1_0.2.13-3_arm64.deb ... 3258s Unpacking libdatrie1:arm64 (0.2.13-3) ... 3258s Selecting previously unselected package libthai0:arm64. 3258s Preparing to unpack .../048-libthai0_0.1.29-2_arm64.deb ... 3258s Unpacking libthai0:arm64 (0.1.29-2) ... 3259s Selecting previously unselected package libpango-1.0-0:arm64. 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libxcursor1:arm64. 3259s Preparing to unpack .../054-libxcursor1_1%3a1.2.1-1_arm64.deb ... 3259s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 3259s Selecting previously unselected package libxdamage1:arm64. 3259s Preparing to unpack .../055-libxdamage1_1%3a1.1.6-1_arm64.deb ... 3259s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 3259s Selecting previously unselected package libxi6:arm64. 3259s Preparing to unpack .../056-libxi6_2%3a1.8.1-1_arm64.deb ... 3259s Unpacking libxi6:arm64 (2:1.8.1-1) ... 3259s Selecting previously unselected package libxinerama1:arm64. 3259s Preparing to unpack .../057-libxinerama1_2%3a1.1.4-3_arm64.deb ... 3259s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 3260s Selecting previously unselected package libxrandr2:arm64. 3260s Preparing to unpack .../058-libxrandr2_2%3a1.5.2-2_arm64.deb ... 3260s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 3260s Selecting previously unselected package libgtk2.0-0:arm64. 3260s Preparing to unpack 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Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 3260s Selecting previously unselected package libxcb-glx0:arm64. 3260s Preparing to unpack .../065-libxcb-glx0_1.15-1_arm64.deb ... 3260s Unpacking libxcb-glx0:arm64 (1.15-1) ... 3260s Selecting previously unselected package libxcb-present0:arm64. 3260s Preparing to unpack .../066-libxcb-present0_1.15-1_arm64.deb ... 3260s Unpacking libxcb-present0:arm64 (1.15-1) ... 3261s Selecting previously unselected package libxcb-randr0:arm64. 3261s Preparing to unpack .../067-libxcb-randr0_1.15-1_arm64.deb ... 3261s Unpacking libxcb-randr0:arm64 (1.15-1) ... 3261s Selecting previously unselected package libxcb-sync1:arm64. 3261s Preparing to unpack .../068-libxcb-sync1_1.15-1_arm64.deb ... 3261s Unpacking libxcb-sync1:arm64 (1.15-1) ... 3261s Selecting previously unselected package libxcb-xfixes0:arm64. 3261s Preparing to unpack .../069-libxcb-xfixes0_1.15-1_arm64.deb ... 3261s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 3261s Selecting previously unselected package libxshmfence1:arm64. 3261s Preparing to unpack .../070-libxshmfence1_1.3-1build4_arm64.deb ... 3261s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 3261s Selecting previously unselected package libxxf86vm1:arm64. 3261s Preparing to unpack .../071-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 3261s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 3261s Selecting previously unselected package libvulkan1:arm64. 3261s Preparing to unpack .../072-libvulkan1_1.3.275.0-1_arm64.deb ... 3261s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 3261s Selecting previously unselected package libdrm-amdgpu1:arm64. 3261s Preparing to unpack .../073-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 3261s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 3261s Selecting previously unselected package libdrm-nouveau2:arm64. 3261s Preparing to unpack .../074-libdrm-nouveau2_2.4.120-2_arm64.deb ... 3261s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 3261s Selecting previously unselected package libdrm-radeon1:arm64. 3261s Preparing to unpack .../075-libdrm-radeon1_2.4.120-2_arm64.deb ... 3261s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 3261s Selecting previously unselected package libllvm17:arm64. 3261s Preparing to unpack .../076-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 3261s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 3264s Selecting previously unselected package libgl1-mesa-dri:arm64. 3264s Preparing to unpack .../077-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 3264s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 3267s Selecting previously unselected package libglx-mesa0:arm64. 3267s Preparing to unpack .../078-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 3267s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 3267s Selecting previously unselected package libglx0:arm64. 3267s Preparing to unpack .../079-libglx0_1.7.0-1_arm64.deb ... 3267s Unpacking libglx0:arm64 (1.7.0-1) ... 3267s Selecting previously unselected package libgl1:arm64. 3267s Preparing to unpack .../080-libgl1_1.7.0-1_arm64.deb ... 3267s Unpacking libgl1:arm64 (1.7.0-1) ... 3267s Selecting previously unselected package libgif7:arm64. 3267s Preparing to unpack .../081-libgif7_5.2.1-2.5_arm64.deb ... 3267s Unpacking libgif7:arm64 (5.2.1-2.5) ... 3267s Selecting previously unselected package x11-common. 3267s Preparing to unpack .../082-x11-common_1%3a7.7+23ubuntu2_all.deb ... 3267s Unpacking x11-common (1:7.7+23ubuntu2) ... 3267s Selecting previously unselected package libxtst6:arm64. 3267s Preparing to unpack .../083-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 3267s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 3267s Selecting previously unselected package openjdk-21-jre:arm64. 3267s Preparing to unpack .../084-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 3267s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 3267s Selecting previously unselected package default-jre. 3267s Preparing to unpack .../085-default-jre_2%3a1.21-75+exp1_arm64.deb ... 3267s Unpacking default-jre 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Selecting previously unselected package libfastinfoset-java. 3269s Preparing to unpack .../113-libfastinfoset-java_1.2.12-3_all.deb ... 3269s Unpacking libfastinfoset-java (1.2.12-3) ... 3269s Selecting previously unselected package libgeronimo-annotation-1.3-spec-java. 3269s Preparing to unpack .../114-libgeronimo-annotation-1.3-spec-java_1.3-1_all.deb ... 3269s Unpacking libgeronimo-annotation-1.3-spec-java (1.3-1) ... 3269s Selecting previously unselected package libgmbal-commons-java. 3269s Preparing to unpack .../115-libgmbal-commons-java_3.2.1-b003-1.1_all.deb ... 3269s Unpacking libgmbal-commons-java (3.2.1-b003-1.1) ... 3269s Selecting previously unselected package libgmbal-pfl-java. 3269s Preparing to unpack .../116-libgmbal-pfl-java_4.0.1-b003-2_all.deb ... 3269s Unpacking libgmbal-pfl-java (4.0.1-b003-2) ... 3270s Selecting previously unselected package libgmbal-java. 3270s Preparing to unpack .../117-libgmbal-java_4.0.0-b002-1.1_all.deb ... 3270s Unpacking libgmbal-java 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libguava-java. 3271s Preparing to unpack .../128-libguava-java_32.0.1-1_all.deb ... 3271s Unpacking libguava-java (32.0.1-1) ... 3271s Selecting previously unselected package libguice-java. 3271s Preparing to unpack .../129-libguice-java_4.2.3-2_all.deb ... 3271s Unpacking libguice-java (4.2.3-2) ... 3271s Selecting previously unselected package libmaven-parent-java. 3271s Preparing to unpack .../130-libmaven-parent-java_35-1_all.deb ... 3271s Unpacking libmaven-parent-java (35-1) ... 3271s Selecting previously unselected package libplexus-utils2-java. 3271s Preparing to unpack .../131-libplexus-utils2-java_3.4.2-1_all.deb ... 3271s Unpacking libplexus-utils2-java (3.4.2-1) ... 3272s Selecting previously unselected package libwagon-provider-api-java. 3272s Preparing to unpack .../132-libwagon-provider-api-java_3.5.3-1_all.deb ... 3272s Unpacking libwagon-provider-api-java (3.5.3-1) ... 3272s Selecting previously unselected package libmaven-resolver-java. 3272s Preparing to unpack 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unselected package libplexus-sec-dispatcher-java. 3272s Preparing to unpack .../138-libplexus-sec-dispatcher-java_2.0-3_all.deb ... 3272s Unpacking libplexus-sec-dispatcher-java (2.0-3) ... 3272s Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java. 3272s Preparing to unpack .../139-libgeronimo-interceptor-3.0-spec-java_1.0.1-4fakesync_all.deb ... 3272s Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 3272s Selecting previously unselected package libcdi-api-java. 3272s Preparing to unpack .../140-libcdi-api-java_1.2-3_all.deb ... 3272s Unpacking libcdi-api-java (1.2-3) ... 3273s Selecting previously unselected package libslf4j-java. 3273s Preparing to unpack .../141-libslf4j-java_1.7.32-1_all.deb ... 3273s Unpacking libslf4j-java (1.7.32-1) ... 3273s Selecting previously unselected package libsisu-inject-java. 3273s Preparing to unpack .../142-libsisu-inject-java_0.3.4-2_all.deb ... 3273s Unpacking libsisu-inject-java (0.3.4-2) ... 3273s Selecting previously unselected package libsisu-plexus-java. 3273s Preparing to unpack .../143-libsisu-plexus-java_0.3.4-3_all.deb ... 3273s Unpacking libsisu-plexus-java (0.3.4-3) ... 3273s Selecting previously unselected package libmaven3-core-java. 3273s Preparing to unpack .../144-libmaven3-core-java_3.8.7-2_all.deb ... 3273s Unpacking libmaven3-core-java (3.8.7-2) ... 3273s Selecting previously unselected package libmaven-shared-io-java. 3273s Preparing to unpack .../145-libmaven-shared-io-java_3.0.0-4_all.deb ... 3273s Unpacking libmaven-shared-io-java (3.0.0-4) ... 3273s Selecting previously unselected package libmaven-file-management-java. 3273s Preparing to unpack .../146-libmaven-file-management-java_3.0.0-1_all.deb ... 3273s Unpacking libmaven-file-management-java (3.0.0-1) ... 3273s Selecting previously unselected package libcommons-compress-java. 3273s Preparing to unpack .../147-libcommons-compress-java_1.25.0-1_all.deb ... 3273s Unpacking libcommons-compress-java (1.25.0-1) ... 3273s Selecting previously unselected package libplexus-io-java. 3273s Preparing to unpack .../148-libplexus-io-java_3.3.1-2_all.deb ... 3273s Unpacking libplexus-io-java (3.3.1-2) ... 3274s Selecting previously unselected package libsnappy1v5:arm64. 3274s Preparing to unpack .../149-libsnappy1v5_1.1.10-1_arm64.deb ... 3274s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 3274s Selecting previously unselected package libsnappy-jni. 3274s Preparing to unpack .../150-libsnappy-jni_1.1.10.5-1_arm64.deb ... 3274s Unpacking libsnappy-jni (1.1.10.5-1) ... 3274s Selecting previously unselected package libsnappy-java. 3274s Preparing to unpack .../151-libsnappy-java_1.1.10.5-1_all.deb ... 3274s Unpacking libsnappy-java (1.1.10.5-1) ... 3274s Selecting previously unselected package libxz-java. 3274s Preparing to unpack .../152-libxz-java_1.9-1_all.deb ... 3274s Unpacking libxz-java (1.9-1) ... 3274s Selecting previously unselected package libplexus-archiver-java. 3274s Preparing to unpack .../153-libplexus-archiver-java_4.6.1-1_all.deb ... 3274s Unpacking libplexus-archiver-java (4.6.1-1) ... 3274s Selecting previously unselected package libhttpcore-java. 3274s Preparing to unpack .../154-libhttpcore-java_4.4.16-1_all.deb ... 3274s Unpacking libhttpcore-java (4.4.16-1) ... 3274s Selecting previously unselected package libcommons-codec-java. 3274s Preparing to unpack .../155-libcommons-codec-java_1.16.0-1_all.deb ... 3274s Unpacking libcommons-codec-java (1.16.0-1) ... 3274s Selecting previously unselected package libhttpclient-java. 3274s Preparing to unpack .../156-libhttpclient-java_4.5.14-1_all.deb ... 3274s Unpacking libhttpclient-java (4.5.14-1) ... 3274s Selecting previously unselected package libjsoup-java. 3274s Preparing to unpack .../157-libjsoup-java_1.15.3-1_all.deb ... 3274s Unpacking libjsoup-java (1.15.3-1) ... 3275s Selecting previously unselected package libwagon-http-java. 3275s Preparing to unpack .../158-libwagon-http-java_3.5.3-1_all.deb ... 3275s Unpacking libwagon-http-java (3.5.3-1) ... 3275s Selecting previously unselected package libistack-commons-java. 3275s Preparing to unpack .../159-libistack-commons-java_3.0.6-5_all.deb ... 3275s Unpacking libistack-commons-java (3.0.6-5) ... 3275s Selecting previously unselected package libcodemodel-java. 3275s Preparing to unpack .../160-libcodemodel-java_2.6+jaxb2.3.0.1-10.1_all.deb ... 3275s Unpacking libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 3275s Selecting previously unselected package librngom-java. 3275s Preparing to unpack .../161-librngom-java_2.3.0.1-10.1_all.deb ... 3275s Unpacking librngom-java (2.3.0.1-10.1) ... 3275s Selecting previously unselected package libtxw2-java. 3275s Preparing to unpack .../162-libtxw2-java_2.3.0.1-10.1_all.deb ... 3275s Unpacking libtxw2-java (2.3.0.1-10.1) ... 3275s Selecting previously unselected package libxml-commons-resolver1.1-java. 3275s Preparing to unpack .../163-libxml-commons-resolver1.1-java_1.2-11_all.deb ... 3275s Unpacking libxml-commons-resolver1.1-java (1.2-11) ... 3275s Selecting previously unselected package libdtd-parser-java. 3275s Preparing to unpack .../164-libdtd-parser-java_1.2-1_all.deb ... 3275s Unpacking libdtd-parser-java (1.2-1) ... 3275s Selecting previously unselected package libjaxb-java. 3275s Preparing to unpack .../165-libjaxb-java_2.3.0.1-10.1_all.deb ... 3275s Unpacking libjaxb-java (2.3.0.1-10.1) ... 3276s Selecting previously unselected package libsaaj-java. 3276s Preparing to unpack .../166-libsaaj-java_1.4.0-4_all.deb ... 3276s Unpacking libsaaj-java (1.4.0-4) ... 3276s Selecting previously unselected package libjaxws-api-java. 3276s Preparing to unpack .../167-libjaxws-api-java_2.3.0-1.1_all.deb ... 3276s Unpacking libjaxws-api-java (2.3.0-1.1) ... 3276s Selecting previously unselected package libjws-api-java. 3276s Preparing to unpack .../168-libjws-api-java_1.1-2_all.deb ... 3276s Unpacking libjws-api-java (1.1-2) ... 3276s Selecting previously unselected package libknopflerfish-osgi-framework-java. 3276s Preparing to unpack .../169-libknopflerfish-osgi-framework-java_6.1.1-3.1_all.deb ... 3276s Unpacking libknopflerfish-osgi-framework-java (6.1.1-3.1) ... 3276s Selecting previously unselected package libisorelax-java. 3276s Preparing to unpack .../170-libisorelax-java_20041111-14_all.deb ... 3276s Unpacking libisorelax-java (20041111-14) ... 3276s Selecting previously unselected package libxml-commons-external-java. 3276s Preparing to unpack .../171-libxml-commons-external-java_1.4.01-6_all.deb ... 3276s Unpacking libxml-commons-external-java (1.4.01-6) ... 3276s Selecting previously unselected package libxerces2-java. 3276s Preparing to unpack .../172-libxerces2-java_2.12.2-1_all.deb ... 3276s Unpacking libxerces2-java (2.12.2-1) ... 3276s Selecting previously unselected package libmsv-java. 3276s Preparing to unpack .../173-libmsv-java_2009.1+dfsg1-6_all.deb ... 3276s Unpacking libmsv-java (2009.1+dfsg1-6) ... 3277s Selecting previously unselected package libstax2-api-java. 3277s Preparing to unpack .../174-libstax2-api-java_4.1-1_all.deb ... 3277s Unpacking libstax2-api-java (4.1-1) ... 3277s Selecting previously unselected package libwoodstox-java. 3277s Preparing to unpack .../175-libwoodstox-java_1%3a6.2.1-1_all.deb ... 3277s Unpacking libwoodstox-java (1:6.2.1-1) ... 3277s Selecting previously unselected package libmetro-policy-java. 3277s Preparing to unpack .../176-libmetro-policy-java_2.7.2-3ubuntu1_all.deb ... 3277s Unpacking libmetro-policy-java (2.7.2-3ubuntu1) ... 3277s Selecting previously unselected package libmimepull-java. 3277s Preparing to unpack .../177-libmimepull-java_1.9.7-2_all.deb ... 3277s Unpacking libmimepull-java (1.9.7-2) ... 3277s Selecting previously unselected package libsaaj-ri-java. 3277s Preparing to unpack .../178-libsaaj-ri-java_1.4.1-1.1_all.deb ... 3277s Unpacking libsaaj-ri-java (1.4.1-1.1) ... 3277s Selecting previously unselected package libjaxws-java. 3277s Preparing to unpack .../179-libjaxws-java_2.3.0.2-2_all.deb ... 3277s Unpacking libjaxws-java (2.3.0.2-2) ... 3278s Selecting previously unselected package javahelp2. 3278s Preparing to unpack .../180-javahelp2_2.0.05.ds1-10_all.deb ... 3278s Unpacking javahelp2 (2.0.05.ds1-10) ... 3278s Selecting previously unselected package libandroid-json-org-java. 3278s Preparing to unpack .../181-libandroid-json-org-java_20121204-20090211-5_all.deb ... 3278s Unpacking libandroid-json-org-java (20121204-20090211-5) ... 3278s Selecting previously unselected package libapache-mime4j-java. 3278s Preparing to unpack .../182-libapache-mime4j-java_0.8.10-1_all.deb ... 3278s Unpacking libapache-mime4j-java (0.8.10-1) ... 3278s Selecting previously unselected package libcommons-httpclient-java. 3278s Preparing to unpack .../183-libcommons-httpclient-java_3.1-16_all.deb ... 3278s Unpacking libcommons-httpclient-java (3.1-16) ... 3278s Selecting previously unselected package libmail-java. 3278s Preparing to unpack .../184-libmail-java_1.6.5-2_all.deb ... 3278s Unpacking libmail-java (1.6.5-2) ... 3278s Selecting previously unselected package libwsdl4j-java. 3278s Preparing to unpack .../185-libwsdl4j-java_1.6.3-4.1_all.deb ... 3278s Unpacking libwsdl4j-java (1.6.3-4.1) ... 3279s Selecting previously unselected package libaxis-java. 3279s Preparing to unpack .../186-libaxis-java_1.4-29_all.deb ... 3279s Unpacking libaxis-java (1.4-29) ... 3279s Selecting previously unselected package libgoogle-gson-java. 3279s Preparing to unpack .../187-libgoogle-gson-java_2.10.1-1_all.deb ... 3279s Unpacking libgoogle-gson-java (2.10.1-1) ... 3279s Selecting previously unselected package libciftools-java. 3279s Preparing to unpack .../188-libciftools-java_5.0.2-1_all.deb ... 3279s Unpacking libciftools-java (5.0.2-1) ... 3279s Selecting previously unselected package libcommons-math-java. 3279s Preparing to unpack .../189-libcommons-math-java_2.2-8_all.deb ... 3279s Unpacking libcommons-math-java (2.2-8) ... 3279s Selecting previously unselected package libitext5-java. 3279s Preparing to unpack .../190-libitext5-java_5.5.13.3-4_all.deb ... 3279s Unpacking libitext5-java (5.5.13.3-4) ... 3279s Selecting previously unselected package libjackson2-annotations-java. 3279s Preparing to unpack .../191-libjackson2-annotations-java_2.14.0-1_all.deb ... 3279s Unpacking libjackson2-annotations-java (2.14.0-1) ... 3279s Selecting previously unselected package libjackson2-core-java. 3279s Preparing to unpack .../192-libjackson2-core-java_2.14.1-1_all.deb ... 3279s Unpacking libjackson2-core-java (2.14.1-1) ... 3279s Selecting previously unselected package libjackson2-databind-java. 3279s Preparing to unpack .../193-libjackson2-databind-java_2.14.0-1_all.deb ... 3279s Unpacking libjackson2-databind-java (2.14.0-1) ... 3280s Selecting previously unselected package libantlr4-runtime-java. 3280s Preparing to unpack .../194-libantlr4-runtime-java_4.9.2-2_all.deb ... 3280s Unpacking libantlr4-runtime-java (4.9.2-2) ... 3280s Selecting previously unselected package libapfloat-java. 3280s Preparing to unpack .../195-libapfloat-java_1.13.0-1_all.deb ... 3280s Unpacking libapfloat-java (1.13.0-1) ... 3280s Selecting previously unselected package libmaven-archiver-java. 3280s Preparing to unpack .../196-libmaven-archiver-java_3.6.0-1_all.deb ... 3280s Unpacking libmaven-archiver-java (3.6.0-1) ... 3280s Selecting previously unselected package libmaven-jar-plugin-java. 3280s Preparing to unpack .../197-libmaven-jar-plugin-java_3.3.0-2_all.deb ... 3280s Unpacking libmaven-jar-plugin-java (3.3.0-2) ... 3280s Selecting previously unselected package libcommons-text-java. 3280s Preparing to unpack .../198-libcommons-text-java_1.11.0-1_all.deb ... 3280s Unpacking libcommons-text-java (1.11.0-1) ... 3280s Selecting previously unselected package libfastutil-java. 3280s Preparing to unpack .../199-libfastutil-java_8.5.12+dfsg-1_all.deb ... 3280s Unpacking libfastutil-java (8.5.12+dfsg-1) ... 3281s Selecting previously unselected package libjheaps-java. 3281s Preparing to unpack .../200-libjheaps-java_0.14-2_all.deb ... 3281s Unpacking libjheaps-java (0.14-2) ... 3281s Selecting previously unselected package libjgraphx-java. 3281s Preparing to unpack .../201-libjgraphx-java_2.1.0.7-3_all.deb ... 3281s Unpacking libjgraphx-java (2.1.0.7-3) ... 3281s Selecting previously unselected package libjgrapht-java. 3281s Preparing to unpack .../202-libjgrapht-java_1.5.2-1_all.deb ... 3281s Unpacking libjgrapht-java (1.5.2-1) ... 3281s Selecting previously unselected package libinchi1. 3281s Preparing to unpack .../203-libinchi1_1.03+dfsg-4_arm64.deb ... 3281s Unpacking libinchi1 (1.03+dfsg-4) ... 3281s Selecting previously unselected package libjni-inchi-jni. 3281s Preparing to unpack .../204-libjni-inchi-jni_0.8+dfsg-7_arm64.deb ... 3281s Unpacking libjni-inchi-jni (0.8+dfsg-7) ... 3281s Selecting previously unselected package libcommons-exec-java. 3281s Preparing to unpack .../205-libcommons-exec-java_1.3-2_all.deb ... 3281s Unpacking libcommons-exec-java (1.3-2) ... 3281s Selecting previously unselected package libexec-maven-plugin-java. 3281s Preparing to unpack .../206-libexec-maven-plugin-java_3.1.0-2_all.deb ... 3281s Unpacking libexec-maven-plugin-java (3.1.0-2) ... 3281s Selecting previously unselected package libmaven-shared-incremental-java. 3281s Preparing to unpack .../207-libmaven-shared-incremental-java_1.1-4_all.deb ... 3282s Unpacking libmaven-shared-incremental-java (1.1-4) ... 3282s Selecting previously unselected package libcommons-lang-java. 3282s Preparing to unpack .../208-libcommons-lang-java_2.6-10_all.deb ... 3282s Unpacking libcommons-lang-java (2.6-10) ... 3282s Selecting previously unselected package libxbean-reflect-java. 3282s Preparing to unpack .../209-libxbean-reflect-java_4.5-8_all.deb ... 3282s Unpacking libxbean-reflect-java (4.5-8) ... 3282s Selecting previously unselected package libplexus-container-default-java. 3282s Preparing to unpack .../210-libplexus-container-default-java_2.1.1-1_all.deb ... 3282s Unpacking libplexus-container-default-java (2.1.1-1) ... 3282s Selecting previously unselected package libplexus-compiler-java. 3282s Preparing to unpack .../211-libplexus-compiler-java_2.12.1-2_all.deb ... 3282s Unpacking libplexus-compiler-java (2.12.1-2) ... 3282s Selecting previously unselected package libqdox2-java. 3282s Preparing to unpack .../212-libqdox2-java_2.0.3-1_all.deb ... 3282s Unpacking libqdox2-java (2.0.3-1) ... 3282s Selecting previously unselected package libplexus-languages-java. 3282s Preparing to unpack .../213-libplexus-languages-java_1.1.1-2_all.deb ... 3282s Unpacking libplexus-languages-java (1.1.1-2) ... 3282s Selecting previously unselected package libmaven-compiler-plugin-java. 3282s Preparing to unpack .../214-libmaven-compiler-plugin-java_3.10.1-2_all.deb ... 3282s Unpacking libmaven-compiler-plugin-java (3.10.1-2) ... 3282s Selecting previously unselected package liblog4j1.2-java. 3282s Preparing to unpack .../215-liblog4j1.2-java_1.2.17-11_all.deb ... 3282s Unpacking liblog4j1.2-java (1.2.17-11) ... 3283s Selecting previously unselected package libjni-inchi-java. 3283s Preparing to unpack .../216-libjni-inchi-java_0.8+dfsg-7_all.deb ... 3283s Unpacking libjni-inchi-java (0.8+dfsg-7) ... 3283s Selecting previously unselected package libnaga-java. 3283s Preparing to unpack .../217-libnaga-java_3.0+svn80-5_all.deb ... 3283s Unpacking libnaga-java (3.0+svn80-5) ... 3283s Selecting previously unselected package libjmol-java. 3283s Preparing to unpack .../218-libjmol-java_14.32.83+dfsg-3_all.deb ... 3283s Unpacking libjmol-java (14.32.83+dfsg-3) ... 3283s Selecting previously unselected package libjson-simple-java. 3283s Preparing to unpack .../219-libjson-simple-java_2.3.0-1_all.deb ... 3283s Unpacking libjson-simple-java (2.3.0-1) ... 3283s Selecting previously unselected package libmsgpack-java. 3283s Preparing to unpack .../220-libmsgpack-java_0.9.6-1_all.deb ... 3283s Unpacking libmsgpack-java (0.9.6-1) ... 3283s Selecting previously unselected package libmmtf-java. 3283s Preparing to unpack .../221-libmmtf-java_1.0.11-1_all.deb ... 3283s Unpacking libmmtf-java (1.0.11-1) ... 3283s Selecting previously unselected package libvecmath-java. 3283s Preparing to unpack .../222-libvecmath-java_1.5.2-7_all.deb ... 3283s Unpacking libvecmath-java (1.5.2-7) ... 3284s Selecting previously unselected package libbiojava6-java. 3284s Preparing to unpack .../223-libbiojava6-java_6.1.0+dfsg-4_all.deb ... 3284s Unpacking libbiojava6-java (6.1.0+dfsg-4) ... 3284s Selecting previously unselected package libcommons-jexl2-java. 3284s Preparing to unpack .../224-libcommons-jexl2-java_2.1.1-6_all.deb ... 3284s Unpacking libcommons-jexl2-java (2.1.1-6) ... 3284s Selecting previously unselected package libmjson-java. 3284s Preparing to unpack .../225-libmjson-java_1.4.0-3_all.deb ... 3284s Unpacking libmjson-java (1.4.0-3) ... 3284s Selecting previously unselected package libmbedcrypto7:arm64. 3284s Preparing to unpack .../226-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 3284s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 3284s Selecting previously unselected package libmbedx509-1:arm64. 3284s Preparing to unpack .../227-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 3284s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 3285s Selecting previously unselected package libmbedtls14:arm64. 3285s Preparing to unpack .../228-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 3285s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 3285s Selecting previously unselected package ncbi-vdb-data. 3285s Preparing to unpack .../229-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 3285s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 3285s Selecting previously unselected package libncbi-vdb3:arm64. 3285s Preparing to unpack .../230-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 3285s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 3285s Selecting previously unselected package libncbi-ngs3:arm64. 3285s Preparing to unpack .../231-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3285s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 3285s Selecting previously unselected package libngs-jni:arm64. 3285s Preparing to unpack .../232-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3285s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 3285s Selecting previously unselected package libngs-java:arm64. 3285s Preparing to unpack .../233-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 3285s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 3285s Selecting previously unselected package librhino-java. 3285s Preparing to unpack .../234-librhino-java_1.7.14-2.1_all.deb ... 3285s Unpacking librhino-java (1.7.14-2.1) ... 3285s Selecting previously unselected package libhtsjdk-java. 3285s Preparing to unpack .../235-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 3285s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 3285s Selecting previously unselected package libhttpmime-java. 3286s Preparing to unpack .../236-libhttpmime-java_4.5.14-1_all.deb ... 3286s Unpacking libhttpmime-java (4.5.14-1) ... 3286s Selecting previously unselected package libintervalstorej-java. 3286s Preparing to unpack .../237-libintervalstorej-java_1.2+dfsg-5_all.deb ... 3286s Unpacking libintervalstorej-java (1.2+dfsg-5) ... 3286s Selecting previously unselected package libjaba-client-java. 3286s Preparing to unpack .../238-libjaba-client-java_2.2.0-2_all.deb ... 3286s Unpacking libjaba-client-java (2.2.0-2) ... 3286s Selecting previously unselected package libjaxrs-api-java. 3286s Preparing to unpack .../239-libjaxrs-api-java_2.1.2-2_all.deb ... 3286s Unpacking libjaxrs-api-java (2.1.2-2) ... 3286s Selecting previously unselected package libjsr311-api-java. 3286s Preparing to unpack .../240-libjsr311-api-java_1.1.1-1.1_all.deb ... 3286s Unpacking libjsr311-api-java (1.1.1-1.1) ... 3286s Selecting previously unselected package libjersey1-core-java. 3286s Preparing to unpack .../241-libjersey1-core-java_1.19.3-8_all.deb ... 3286s Unpacking libjersey1-core-java (1.19.3-8) ... 3286s Selecting previously unselected package libjersey1-client-java. 3286s Preparing to unpack .../242-libjersey1-client-java_1.19.3-8_all.deb ... 3286s Unpacking libjersey1-client-java (1.19.3-8) ... 3286s Selecting previously unselected package libel-api-java. 3286s Preparing to unpack .../243-libel-api-java_3.0.0-3_all.deb ... 3286s Unpacking libel-api-java (3.0.0-3) ... 3287s Selecting previously unselected package libwebsocket-api-java. 3287s Preparing to unpack .../244-libwebsocket-api-java_1.1-2_all.deb ... 3287s Unpacking libwebsocket-api-java (1.1-2) ... 3287s Selecting previously unselected package libjetty9-java. 3287s Preparing to unpack .../245-libjetty9-java_9.4.53-1_all.deb ... 3287s Unpacking libjetty9-java (9.4.53-1) ... 3287s Selecting previously unselected package libjfreesvg-java. 3287s Preparing to unpack .../246-libjfreesvg-java_4.1-2_all.deb ... 3287s Unpacking libjfreesvg-java (4.1-2) ... 3287s Selecting previously unselected package libjswingreader-java. 3287s Preparing to unpack .../247-libjswingreader-java_0.3-4_all.deb ... 3287s Unpacking libjswingreader-java (0.3-4) ... 3287s Selecting previously unselected package liblightcouch-java. 3287s Preparing to unpack .../248-liblightcouch-java_0.2.0-1_all.deb ... 3287s Unpacking liblightcouch-java (0.2.0-1) ... 3287s Selecting previously unselected package libmongodb-java. 3287s Preparing to unpack .../249-libmongodb-java_3.6.3-2_all.deb ... 3287s Unpacking libmongodb-java (3.6.3-2) ... 3288s Selecting previously unselected package liblog4j2-java. 3288s Preparing to unpack .../250-liblog4j2-java_2.19.0-2_all.deb ... 3288s Unpacking liblog4j2-java (2.19.0-2) ... 3288s Selecting previously unselected package libmiglayout-java. 3288s Preparing to unpack .../251-libmiglayout-java_11.1+ds-1_all.deb ... 3288s Unpacking libmiglayout-java (11.1+ds-1) ... 3288s Selecting previously unselected package libcastor-core-java. 3288s Preparing to unpack .../252-libcastor-core-java_1.3.2-7_all.deb ... 3288s Unpacking libcastor-core-java (1.3.2-7) ... 3288s Selecting previously unselected package libcastor-xml-java. 3288s Preparing to unpack .../253-libcastor-xml-java_1.3.2-7_all.deb ... 3288s Unpacking libcastor-xml-java (1.3.2-7) ... 3288s Selecting previously unselected package libvamsas-client-java. 3289s Preparing to unpack .../254-libvamsas-client-java_0.2+dfsg-2_all.deb ... 3289s Unpacking libvamsas-client-java (0.2+dfsg-2) ... 3289s Selecting previously unselected package varna. 3289s Preparing to unpack .../255-varna_3-93+ds-5_all.deb ... 3289s Unpacking varna (3-93+ds-5) ... 3289s Selecting previously unselected package jalview. 3289s Preparing to unpack .../256-jalview_2.11.3.1+dfsg-1_all.deb ... 3289s Unpacking jalview (2.11.3.1+dfsg-1) ... 3289s Selecting previously unselected package autopkgtest-satdep. 3289s Preparing to unpack .../257-5-autopkgtest-satdep.deb ... 3289s Unpacking autopkgtest-satdep (0) ... 3289s Setting up libgmbal-commons-java (3.2.1-b003-1.1) ... 3289s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 3289s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 3289s Setting up liblcms2-2:arm64 (2.14-2) ... 3289s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 3289s Setting up libfastutil-java (8.5.12+dfsg-1) ... 3289s Setting up libjackson2-annotations-java (2.14.0-1) ... 3289s Setting up libdtd-parser-java (1.2-1) ... 3289s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 3289s Setting up libjaxrs-api-java (2.1.2-2) ... 3289s Setting up libknopflerfish-osgi-framework-java (6.1.1-3.1) ... 3289s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 3289s Setting up libslf4j-java (1.7.32-1) ... 3289s Setting up libplexus-utils2-java (3.4.2-1) ... 3289s Setting up libmiglayout-java (11.1+ds-1) ... 3289s Setting up libplexus-classworlds-java (2.7.0-1) ... 3289s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 3289s Setting up libqdox-java (1.12.1-3) ... 3289s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 3289s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 3289s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 3289s Setting up libjsr305-java (0.1~+svn49-11) ... 3289s Setting up libjws-api-java (1.1-2) ... 3289s Setting up hicolor-icon-theme (0.17-2) ... 3289s Setting up libxi6:arm64 (2:1.8.1-1) ... 3289s Setting up java-common (0.75+exp1) ... 3289s Setting up libgmbal-pfl-java (4.0.1-b003-2) ... 3289s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 3289s Setting up libdatrie1:arm64 (0.2.13-3) ... 3289s Setting up libqdox2-java (2.0.3-1) ... 3289s Setting up libaopalliance-java (20070526-7) ... 3289s Setting up libcommons-cli-java (1.6.0-1) ... 3289s Setting up libjheaps-java (0.14-2) ... 3289s Setting up libcommons-exec-java (1.3-2) ... 3289s Setting up libvecmath-java (1.5.2-7) ... 3289s Setting up libxcb-render0:arm64 (1.15-1) ... 3289s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 3289s Setting up libglvnd0:arm64 (1.7.0-1) ... 3289s Setting up libgoogle-gson-java (2.10.1-1) ... 3289s Setting up libjsr311-api-java (1.1.1-1.1) ... 3289s Setting up libmjson-java (1.4.0-3) ... 3289s Setting up libxcb-glx0:arm64 (1.15-1) ... 3289s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 3289s Setting up libasm-java (9.6~us1-0ubuntu1) ... 3289s Setting up x11-common (1:7.7+23ubuntu2) ... 3291s Setting up libdeflate0:arm64 (1.19-1) ... 3291s Setting up liblog4j1.2-java (1.2.17-11) ... 3291s Setting up libel-api-java (3.0.0-3) ... 3291s Setting up libplexus-component-annotations-java (2.1.1-1) ... 3291s Setting up libantlr4-runtime-java (4.9.2-2) ... 3291s Setting up libxcb-shm0:arm64 (1.15-1) ... 3291s Setting up libjson-simple-java (2.3.0-1) ... 3291s Setting up libwsdl4j-java (1.6.3-4.1) ... 3291s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 3291s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 3291s Setting up libstax2-api-java (4.1-1) ... 3291s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 3291s Setting up libexec-maven-plugin-java (3.1.0-2) ... 3291s Setting up libxcb-present0:arm64 (1.15-1) ... 3291s Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... 3291s Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... 3291s Setting up libasound2-data (1.2.10-3build1) ... 3291s Setting up libandroid-json-org-java (20121204-20090211-5) ... 3291s Setting up librhino-java (1.7.14-2.1) ... 3291s Setting up libbsf-java (1:2.4.0-8) ... 3291s Setting up libjersey1-core-java (1.19.3-8) ... 3291s Setting up libjaxen-java (1.1.6-4) ... 3291s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 3291s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 3291s Setting up libxcb-sync1:arm64 (1.15-1) ... 3291s Setting up libjansi-java (2.4.1-2) ... 3291s Setting up libapache-pom-java (29-2) ... 3291s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 3291s Setting up libxpp3-java (1.1.4c-3) ... 3291s Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... 3291s Setting up libwebsocket-api-java (1.1-2) ... 3291s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 3291s Setting up libplexus-interpolation-java (1.26-1) ... 3291s Setting up fonts-dejavu-mono (2.37-8) ... 3291s Setting up libitext5-java (5.5.13.3-4) ... 3291s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 3291s Setting up libxz-java (1.9-1) ... 3291s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 3291s Setting up fonts-dejavu-core (2.37-8) ... 3291s Setting up libpcsclite1:arm64 (2.0.0-1) ... 3291s Setting up libintervalstorej-java (1.2+dfsg-5) ... 3291s Setting up libmongodb-java (3.6.3-2) ... 3291s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 3291s Setting up libisorelax-java (20041111-14) ... 3291s Setting up libactivation-java (1.2.0-2) ... 3291s Setting up libhamcrest-java (2.2-2) ... 3291s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 3291s Setting up libjsp-api-java (2.3.4-3) ... 3291s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 3291s Setting up libmimepull-java (1.9.7-2) ... 3291s Setting up libapfloat-java (1.13.0-1) ... 3291s Setting up libwebp7:arm64 (1.3.2-0.4) ... 3291s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 3291s Setting up libgif7:arm64 (5.2.1-2.5) ... 3291s Setting up libjfreesvg-java (4.1-2) ... 3291s Setting up libxshmfence1:arm64 (1.3-1build4) ... 3291s Setting up libjsoup-java (1.15.3-1) ... 3291s Setting up libmail-java (1.6.5-2) ... 3291s Setting up at-spi2-common (2.50.0-1) ... 3291s Setting up libcommons-math-java (2.2-8) ... 3291s Setting up libxcb-randr0:arm64 (1.15-1) ... 3291s Setting up libxml-commons-external-java (1.4.01-6) ... 3291s Setting up libxbean-reflect-java (4.5-8) ... 3291s Setting up libasound2:arm64 (1.2.10-3build1) ... 3291s Setting up libservlet-api-java (4.0.1-2) ... 3291s Setting up libjackson2-core-java (2.14.1-1) ... 3291s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 3291s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 3291s Setting up libthai-data (0.1.29-2) ... 3291s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 3291s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 3291s Setting up libhttpcore-java (4.4.16-1) ... 3291s Setting up ca-certificates-java (20240118) ... 3291s No JRE found. Skipping Java certificates setup. 3291s Setting up libxerces2-java (2.12.2-1) ... 3291s Setting up libgmbal-java (4.0.0-b002-1.1) ... 3291s Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... 3291s Setting up libantlr-java (2.7.7+dfsg-13) ... 3291s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 3291s Setting up libcdi-api-java (1.2-3) ... 3291s Setting up libsnappy-jni (1.1.10.5-1) ... 3291s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 3291s Setting up libhawtjni-runtime-java (1.18-1) ... 3291s Setting up libargs4j-java (2.33-2) ... 3291s Setting up libinchi1 (1.03+dfsg-4) ... 3291s Setting up libsaaj-java (1.4.0-4) ... 3291s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 3291s Setting up libnaga-java (3.0+svn80-5) ... 3291s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 3291s Setting up libdom4j-java (2.1.4-1) ... 3291s Setting up libjaxb-api-java (2.3.1-1) ... 3291s Setting up libwagon-provider-api-java (3.5.3-1) ... 3291s Setting up libxstream-java (1.4.20-1) ... 3291s Setting up libjetty9-java (9.4.53-1) ... 3291s Setting up libjersey1-client-java (1.19.3-8) ... 3291s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 3291s Setting up libplexus-languages-java (1.1.1-2) ... 3291s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 3291s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 3292s Setting up libstax-ex-java (1.7.8-3) ... 3292s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 3292s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 3292s Setting up libmaven-parent-java (35-1) ... 3292s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 3292s Setting up libcommons-parent-java (56-1) ... 3292s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 3292s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 3292s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 3292s Setting up libsisu-inject-java (0.3.4-2) ... 3292s Setting up libciftools-java (5.0.2-1) ... 3292s Setting up libjaxws-api-java (2.3.0-1.1) ... 3292s Setting up libcommons-lang-java (2.6-10) ... 3292s Setting up libjackson2-databind-java (2.14.0-1) ... 3292s Setting up libplexus-cipher-java (2.0-1) ... 3292s Setting up libcastor-core-java (1.3.2-7) ... 3292s Setting up libcommons-jexl2-java (2.1.1-6) ... 3292s Setting up libthai0:arm64 (0.1.29-2) ... 3292s Setting up libsisu-plexus-java (0.3.4-3) ... 3292s Setting up libcastor-xml-java (1.3.2-7) ... 3292s Setting up libstreambuffer-java (1.5.4-1.1) ... 3292s Setting up libjswingreader-java (0.3-4) ... 3292s Setting up libcommons-discovery-java (0.5-4) ... 3292s Setting up libcommons-lang3-java (3.14.0-1) ... 3292s Setting up librngom-java (2.3.0.1-10.1) ... 3292s Setting up libjni-inchi-jni (0.8+dfsg-7) ... 3292s Setting up libjansi-native-java (1.8-2) ... 3292s Setting up libjgraphx-java (2.1.0.7-3) ... 3292s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 3292s Setting up libjansi1-java (1.18-3ubuntu1) ... 3292s Setting up libplexus-sec-dispatcher-java (2.0-3) ... 3292s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 3292s Setting up libsnappy-java (1.1.10.5-1) ... 3292s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 3292s Setting up libxsom-java (2.3.0.1-10.1) ... 3292s Setting up libcommons-codec-java (1.16.0-1) ... 3292s Setting up libjline2-java (2.14.6-5) ... 3292s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 3292s Setting up libsaaj-ri-java (1.4.1-1.1) ... 3292s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 3292s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 3292s Setting up fontconfig (2.15.0-1ubuntu1) ... 3294s Regenerating fonts cache... done. 3294s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 3294s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 3294s Setting up libglx0:arm64 (1.7.0-1) ... 3294s Setting up libcommons-compress-java (1.25.0-1) ... 3294s Setting up libcommons-io-java (2.11.0-2) ... 3294s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 3294s Setting up libvamsas-client-java (0.2+dfsg-2) ... 3294s Setting up libcairo2:arm64 (1.18.0-1) ... 3294s Setting up libmaven-resolver-java (1.6.3-1) ... 3294s Setting up libgl1:arm64 (1.7.0-1) ... 3294s Setting up libcommons-httpclient-java (3.1-16) ... 3294s Setting up libaxis-java (1.4-29) ... 3294s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 3294s Setting up libhttpclient-java (4.5.14-1) ... 3294s Setting up liblightcouch-java (0.2.0-1) ... 3294s Setting up libwagon-http-java (3.5.3-1) ... 3294s Setting up libmaven-shared-utils-java (3.3.4-1) ... 3294s Setting up libfastinfoset-java (1.2.12-3) ... 3294s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 3294s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 3294s Setting up libapache-mime4j-java (0.8.10-1) ... 3294s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 3294s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 3294s Setting up libplexus-io-java (3.3.1-2) ... 3294s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 3294s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 3294s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 3294s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 3294s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 3294s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 3295s Setting up liblog4j2-java (2.19.0-2) ... 3295s Setting up libhttpmime-java (4.5.14-1) ... 3295s Setting up libplexus-archiver-java (4.6.1-1) ... 3295s Setting up libmaven-archiver-java (3.6.0-1) ... 3295s Setting up adwaita-icon-theme (46~rc-1) ... 3295s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 3295s Setting up liberror-prone-java (2.18.0-1) ... 3295s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 3295s Setting up humanity-icon-theme (0.6.16) ... 3295s Setting up libguava-java (32.0.1-1) ... 3295s Setting up libplexus-container-default-java (2.1.1-1) ... 3295s Setting up ubuntu-mono (24.04-0ubuntu1) ... 3295s Setting up libguice-java (4.2.3-2) ... 3295s Setting up libmaven3-core-java (3.8.7-2) ... 3295s Setting up libmaven-shared-incremental-java (1.1-4) ... 3295s Setting up libmaven-shared-io-java (3.0.0-4) ... 3295s Setting up libplexus-compiler-java (2.12.1-2) ... 3295s Setting up libmaven-compiler-plugin-java (3.10.1-2) ... 3295s Setting up libjni-inchi-java (0.8+dfsg-7) ... 3295s Setting up libmaven-file-management-java (3.0.0-1) ... 3295s Setting up libjmol-java (14.32.83+dfsg-3) ... 3295s Setting up libmaven-jar-plugin-java (3.3.0-2) ... 3296s Setting up libcommons-text-java (1.11.0-1) ... 3296s Setting up libmsgpack-java (0.9.6-1) ... 3296s Setting up libmmtf-java (1.0.11-1) ... 3296s Setting up libjgrapht-java (1.5.2-1) ... 3296s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3296s Processing triggers for man-db (2.12.0-3) ... 3297s Processing triggers for shared-mime-info (2.4-1) ... 3299s Processing triggers for ca-certificates-java (20240118) ... 3300s Adding debian:ACCVRAIZ1.pem 3300s Adding debian:AC_RAIZ_FNMT-RCM.pem 3301s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 3301s Adding debian:ANF_Secure_Server_Root_CA.pem 3301s Adding debian:Actalis_Authentication_Root_CA.pem 3301s Adding debian:AffirmTrust_Commercial.pem 3301s Adding debian:AffirmTrust_Networking.pem 3301s Adding debian:AffirmTrust_Premium.pem 3301s Adding debian:AffirmTrust_Premium_ECC.pem 3301s Adding debian:Amazon_Root_CA_1.pem 3301s Adding debian:Amazon_Root_CA_2.pem 3301s Adding debian:Amazon_Root_CA_3.pem 3301s Adding debian:Amazon_Root_CA_4.pem 3301s Adding debian:Atos_TrustedRoot_2011.pem 3301s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 3301s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 3301s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 3301s Adding debian:BJCA_Global_Root_CA1.pem 3301s Adding debian:BJCA_Global_Root_CA2.pem 3301s Adding debian:Baltimore_CyberTrust_Root.pem 3301s Adding debian:Buypass_Class_2_Root_CA.pem 3301s Adding debian:Buypass_Class_3_Root_CA.pem 3301s Adding debian:CA_Disig_Root_R2.pem 3301s Adding debian:CFCA_EV_ROOT.pem 3301s Adding debian:COMODO_Certification_Authority.pem 3301s Adding debian:COMODO_ECC_Certification_Authority.pem 3301s Adding debian:COMODO_RSA_Certification_Authority.pem 3301s Adding debian:Certainly_Root_E1.pem 3301s Adding debian:Certainly_Root_R1.pem 3301s Adding debian:Certigna.pem 3301s Adding debian:Certigna_Root_CA.pem 3301s Adding debian:Certum_EC-384_CA.pem 3301s Adding debian:Certum_Trusted_Network_CA.pem 3301s Adding debian:Certum_Trusted_Network_CA_2.pem 3301s Adding debian:Certum_Trusted_Root_CA.pem 3301s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 3301s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 3301s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 3301s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 3301s Adding debian:Comodo_AAA_Services_root.pem 3301s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 3301s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 3301s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 3301s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 3301s Adding debian:DigiCert_Assured_ID_Root_CA.pem 3301s Adding debian:DigiCert_Assured_ID_Root_G2.pem 3301s Adding debian:DigiCert_Assured_ID_Root_G3.pem 3301s Adding debian:DigiCert_Global_Root_CA.pem 3301s Adding debian:DigiCert_Global_Root_G2.pem 3301s Adding debian:DigiCert_Global_Root_G3.pem 3301s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 3301s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 3301s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 3301s Adding debian:DigiCert_Trusted_Root_G4.pem 3301s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 3301s Adding debian:Entrust_Root_Certification_Authority.pem 3301s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 3301s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 3301s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 3301s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 3301s Adding debian:GLOBALTRUST_2020.pem 3301s Adding debian:GTS_Root_R1.pem 3301s Adding debian:GTS_Root_R2.pem 3301s Adding debian:GTS_Root_R3.pem 3301s Adding debian:GTS_Root_R4.pem 3301s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 3301s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 3301s Adding debian:GlobalSign_Root_CA.pem 3301s Adding debian:GlobalSign_Root_CA_-_R3.pem 3301s Adding debian:GlobalSign_Root_CA_-_R6.pem 3301s Adding debian:GlobalSign_Root_E46.pem 3301s Adding debian:GlobalSign_Root_R46.pem 3301s Adding debian:Go_Daddy_Class_2_CA.pem 3301s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 3301s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 3301s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 3302s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 3302s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 3302s Adding debian:HiPKI_Root_CA_-_G1.pem 3302s Adding debian:Hongkong_Post_Root_CA_3.pem 3302s Adding debian:ISRG_Root_X1.pem 3302s Adding debian:ISRG_Root_X2.pem 3302s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 3302s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 3302s Adding debian:Izenpe.com.pem 3302s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 3302s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 3302s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 3302s Adding debian:NAVER_Global_Root_Certification_Authority.pem 3302s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 3302s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 3303s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 3303s Adding debian:QuoVadis_Root_CA_1_G3.pem 3303s Adding debian:QuoVadis_Root_CA_2.pem 3303s Adding debian:QuoVadis_Root_CA_2_G3.pem 3303s Adding debian:QuoVadis_Root_CA_3.pem 3303s Adding debian:QuoVadis_Root_CA_3_G3.pem 3303s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 3303s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 3303s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 3303s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 3303s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 3303s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 3303s Adding debian:SZAFIR_ROOT_CA2.pem 3303s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 3303s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 3303s Adding debian:SecureSign_RootCA11.pem 3303s Adding debian:SecureTrust_CA.pem 3303s Adding debian:Secure_Global_CA.pem 3303s Adding debian:Security_Communication_ECC_RootCA1.pem 3303s Adding debian:Security_Communication_RootCA2.pem 3303s Adding debian:Security_Communication_RootCA3.pem 3303s Adding debian:Security_Communication_Root_CA.pem 3303s Adding debian:Starfield_Class_2_CA.pem 3303s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 3303s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 3303s Adding debian:SwissSign_Gold_CA_-_G2.pem 3303s Adding debian:SwissSign_Silver_CA_-_G2.pem 3303s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 3303s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 3303s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 3303s Adding debian:TWCA_Global_Root_CA.pem 3303s Adding debian:TWCA_Root_Certification_Authority.pem 3303s Adding debian:TeliaSonera_Root_CA_v1.pem 3303s Adding debian:Telia_Root_CA_v2.pem 3303s Adding debian:TrustAsia_Global_Root_CA_G3.pem 3303s Adding debian:TrustAsia_Global_Root_CA_G4.pem 3303s Adding debian:Trustwave_Global_Certification_Authority.pem 3303s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 3303s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 3303s Adding debian:TunTrust_Root_CA.pem 3303s Adding debian:UCA_Extended_Validation_Root.pem 3303s Adding debian:UCA_Global_G2_Root.pem 3303s Adding debian:USERTrust_ECC_Certification_Authority.pem 3303s Adding debian:USERTrust_RSA_Certification_Authority.pem 3303s Adding debian:XRamp_Global_CA_Root.pem 3303s Adding debian:certSIGN_ROOT_CA.pem 3303s Adding debian:certSIGN_Root_CA_G2.pem 3303s Adding debian:e-Szigno_Root_CA_2017.pem 3303s Adding debian:ePKI_Root_Certification_Authority.pem 3303s Adding debian:emSign_ECC_Root_CA_-_C3.pem 3303s Adding debian:emSign_ECC_Root_CA_-_G3.pem 3303s Adding debian:emSign_Root_CA_-_C1.pem 3303s Adding debian:emSign_Root_CA_-_G1.pem 3303s Adding debian:vTrus_ECC_Root_CA.pem 3303s Adding debian:vTrus_Root_CA.pem 3303s done. 3303s Setting up ant (1.10.14-1) ... 3303s Setting up libmsv-java (2009.1+dfsg1-6) ... 3303s Setting up junit4 (4.13.2-4) ... 3303s Setting up default-jre-headless (2:1.21-75+exp1) ... 3303s Setting up varna (3-93+ds-5) ... 3303s Setting up ant-optional (1.10.14-1) ... 3303s Setting up libwoodstox-java (1:6.2.1-1) ... 3303s Setting up antlr (2.7.7+dfsg-13) ... 3303s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 3303s Setting up ivy (2.5.2-1) ... 3303s Setting up javahelp2 (2.0.05.ds1-10) ... 3303s Setting up groovy (2.4.21-10) ... 3303s update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode 3303s update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode 3303s update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode 3303s update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode 3303s update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode 3303s update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode 3303s update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode 3303s update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode 3303s Setting up libistack-commons-java (3.0.6-5) ... 3303s Setting up default-jre (2:1.21-75+exp1) ... 3303s Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... 3303s Setting up libtxw2-java (2.3.0.1-10.1) ... 3303s Setting up libjaxb-java (2.3.0.1-10.1) ... 3303s Setting up libmetro-policy-java (2.7.2-3ubuntu1) ... 3303s Setting up libbiojava6-java (6.1.0+dfsg-4) ... 3303s Setting up libjaba-client-java (2.2.0-2) ... 3303s Setting up libjaxws-java (2.3.0.2-2) ... 3303s Setting up jalview (2.11.3.1+dfsg-1) ... 3303s Setting up autopkgtest-satdep (0) ... 3327s (Reading database ... 94118 files and directories currently installed.) 3327s Removing autopkgtest-satdep (0) ... 3335s autopkgtest [18:22:09]: test jalview-run-unit-test: [----------------------- 3335s Could not obtain JAVA_COMPILE_VERSION for comparison 3335s Could not make Java version check 3337s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (987230208). 3337s Cannot get screen resolution: 3337s No X11 DISPLAY variable was set, 3337s or no headful library support was found, 3337s but this program performed an operation which requires it, 3337s 3337s Cannot get screen size height and width: 3337s No X11 DISPLAY variable was set, 3337s or no headful library support was found, 3337s but this program performed an operation which requires it, 3337s 3339s Java version: 21.0.2 3339s Java home: /usr/lib/jvm/java-21-openjdk-arm64 3339s Java arch: aarch64 Linux 6.8.0-11-generic 3339s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 3339s Falling back to properties file '/home/ubuntu/.jalview_properties' 3339s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 3339s Setting initial log level to INFO 3342s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 3342s SLF4J: Defaulting to no-operation (NOP) logger implementation 3342s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 3343s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (960ms) 3343s INFO - Getting messages for lang: en 3343s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 3344s WARN - Error when running commands 3344s Could not obtain JAVA_COMPILE_VERSION for comparison 3344s Could not make Java version check 3344s CMD [-open uniref50.fa] executed successfully! 3346s Creating EPS file: /tmp/autopkgtest.w2H4x5/autopkgtest_tmp/uniref50_out.eps 3347s Output generated in eps format in /tmp/autopkgtest.w2H4x5/autopkgtest_tmp/uniref50_out.eps 3348s Could not obtain JAVA_COMPILE_VERSION for comparison 3348s Could not make Java version check 3349s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (987230208). 3349s Cannot get screen resolution: 3349s No X11 DISPLAY variable was set, 3349s or no headful library support was found, 3349s but this program performed an operation which requires it, 3349s 3349s Cannot get screen size height and width: 3349s No X11 DISPLAY variable was set, 3349s or no headful library support was found, 3349s but this program performed an operation which requires it, 3349s 3351s Java version: 21.0.2 3351s Java home: /usr/lib/jvm/java-21-openjdk-arm64 3351s Java arch: aarch64 Linux 6.8.0-11-generic 3351s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 3351s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 3351s Setting initial log level to INFO 3355s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 3355s SLF4J: Defaulting to no-operation (NOP) logger implementation 3355s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 3356s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (956ms) 3356s INFO - Getting messages for lang: en 3356s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 3356s WARN - Error when running commands 3356s Could not obtain JAVA_COMPILE_VERSION for comparison 3356s CMD [-open uniref50.fa] executed successfully! 3356s Could not make Java version check 3358s Creating HTML image: uniref50_out.html 3358s Exporting alignment as HTML file 3359s java.io.FileNotFoundException: /tmp/autopkgtest.w2H4x5/autopkgtest_tmp/examples/javascript/facebox-1.3.js (No such file or directory) 3359s at java.base/java.io.FileInputStream.open0(Native Method) 3359s at java.base/java.io.FileInputStream.open(FileInputStream.java:213) 3359s at java.base/java.io.FileInputStream.(FileInputStream.java:152) 3359s at java.base/java.io.FileInputStream.(FileInputStream.java:106) 3359s at java.base/sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:84) 3359s at java.base/sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:180) 3359s at java.base/java.net.URL.openStream(URL.java:1325) 3359s at jalview.io.HTMLOutput.readFileAsString(HTMLOutput.java:121) 3359s at jalview.io.HtmlSvgOutput.getHtml(HtmlSvgOutput.java:177) 3359s at jalview.io.HtmlSvgOutput.doOutput(HtmlSvgOutput.java:301) 3359s at jalview.io.HtmlSvgOutput.run(HtmlSvgOutput.java:248) 3359s at jalview.io.HTMLOutput.exportHTML(HTMLOutput.java:342) 3359s at jalview.io.HTMLOutput.exportHTML(HTMLOutput.java:308) 3359s at jalview.bin.Jalview.doMain(Jalview.java:1039) 3359s at jalview.bin.Jalview.main(Jalview.java:253) 3359s HTML Export completed 3359s Output generated in html format in /tmp/autopkgtest.w2H4x5/autopkgtest_tmp/uniref50_out.html 3359s Could not obtain JAVA_COMPILE_VERSION for comparison 3359s Could not make Java version check 3361s MemorySetting Property 'jvmmempc' (null) too large. Leaving free space for OS and reducing to (987230208). 3361s Cannot get screen resolution: 3361s No X11 DISPLAY variable was set, 3361s or no headful library support was found, 3361s but this program performed an operation which requires it, 3361s 3361s Cannot get screen size height and width: 3361s No X11 DISPLAY variable was set, 3361s or no headful library support was found, 3361s but this program performed an operation which requires it, 3361s 3363s Java version: 21.0.2 3363s Java home: /usr/lib/jvm/java-21-openjdk-arm64 3363s Java arch: aarch64 Linux 6.8.0-11-generic 3363s Using default properties file '/home/ubuntu/.jalview_nonrelease_properties' 3363s Jalview non-release version: 2.11.3.1+dfsg-1 (deb) 3363s Setting initial log level to INFO 3366s SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". 3366s SLF4J: Defaulting to no-operation (NOP) logger implementation 3366s SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 3367s INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (944ms) 3367s INFO - Getting messages for lang: en 3367s WARN - It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview. Find out about the new command line arguments at https://www.jalview.org/help/html/features/commandline.html 3368s WARN - Error when running commands 3368s Could not obtain JAVA_COMPILE_VERSION for comparison 3368s Could not make Java version check 3368s CMD [-open uniref50.fa] executed successfully! 3369s Creating PNG image: uniref50_out.png 3371s Output generated in png format in /tmp/autopkgtest.w2H4x5/autopkgtest_tmp/uniref50_out.png 3371s autopkgtest [18:22:45]: test jalview-run-unit-test: -----------------------] 3372s autopkgtest [18:22:46]: test jalview-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 3372s jalview-run-unit-test PASS 3372s autopkgtest [18:22:46]: test command1: preparing testbed 3475s autopkgtest [18:24:29]: testbed dpkg architecture: arm64 3476s autopkgtest [18:24:30]: testbed apt version: 2.7.12 3476s autopkgtest [18:24:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 3477s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 3477s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 3478s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 3478s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 3478s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 3478s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [710 kB] 3478s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 3478s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 3478s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 3478s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 3478s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 3478s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 3478s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 3484s Fetched 9851 kB in 3s (3174 kB/s) 3484s Reading package lists... 3488s Reading package lists... 3489s Building dependency tree... 3489s Reading state information... 3490s Calculating upgrade... 3491s The following packages will be REMOVED: 3491s libssl3 3491s The following NEW packages will be installed: 3491s libssl3t64 3491s The following packages have been kept back: 3491s curl 3491s The following packages will be upgraded: 3491s openssl 3491s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 3491s Need to get 2777 kB of archives. 3491s After this operation, 139 kB of additional disk space will be used. 3491s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 3492s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 3493s Fetched 2777 kB in 1s (3976 kB/s) 3493s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 3493s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 3493s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 3494s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 3494s wget depends on libssl3 (>= 3.0.0). 3494s u-boot-tools depends on libssl3 (>= 3.0.0). 3494s tnftp depends on libssl3 (>= 3.0.0). 3494s tcpdump depends on libssl3 (>= 3.0.0). 3494s systemd-resolved depends on libssl3 (>= 3.0.0). 3494s systemd depends on libssl3 (>= 3.0.0). 3494s sudo depends on libssl3 (>= 3.0.0). 3494s sbsigntool depends on libssl3 (>= 3.0.0). 3494s rsync depends on libssl3 (>= 3.0.0). 3494s python3-cryptography depends on libssl3 (>= 3.0.0). 3494s openssh-server depends on libssl3 (>= 3.0.10). 3494s openssh-client depends on libssl3 (>= 3.0.10). 3494s mtd-utils depends on libssl3 (>= 3.0.0). 3494s mokutil depends on libssl3 (>= 3.0.0). 3494s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 3494s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 3494s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 3494s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 3494s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 3494s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 3494s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 3494s libnvme1 depends on libssl3 (>= 3.0.0). 3494s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 3494s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 3494s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 3494s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 3494s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 3494s kmod depends on libssl3 (>= 3.0.0). 3494s dhcpcd-base depends on libssl3 (>= 3.0.0). 3494s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 3494s 3494s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 3494s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 3494s Selecting previously unselected package libssl3t64:arm64. 3494s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 3494s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 3494s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 3494s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 3494s Setting up openssl (3.0.13-0ubuntu2) ... 3494s Processing triggers for man-db (2.12.0-3) ... 3495s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3496s Reading package lists... 3496s Building dependency tree... 3496s Reading state information... 3497s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 3499s sh: Attempting to set up Debian/Ubuntu apt sources automatically 3499s sh: Distribution appears to be Ubuntu 3500s Reading package lists... 3501s Building dependency tree... 3501s Reading state information... 3502s eatmydata is already the newest version (131-1). 3502s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3502s Reading package lists... 3503s Building dependency tree... 3503s Reading state information... 3504s dbus is already the newest version (1.14.10-4ubuntu1). 3504s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3504s Reading package lists... 3504s Building dependency tree... 3504s Reading state information... 3506s rng-tools-debian is already the newest version (2.4). 3506s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3506s Reading package lists... 3506s Building dependency tree... 3506s Reading state information... 3507s The following packages will be REMOVED: 3507s cloud-init* python3-configobj* python3-debconf* 3508s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 3508s After this operation, 3256 kB disk space will be freed. 3508s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 3508s Removing cloud-init (24.1.2-0ubuntu1) ... 3510s Removing python3-configobj (5.0.8-3) ... 3510s Removing python3-debconf (1.5.86) ... 3510s Processing triggers for man-db (2.12.0-3) ... 3511s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 3511s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 3512s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 3512s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 3512s invoke-rc.d: policy-rc.d denied execution of try-restart. 3513s Reading package lists... 3513s Building dependency tree... 3513s Reading state information... 3514s linux-generic is already the newest version (6.8.0-11.11+1). 3514s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3515s Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 3515s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 3515s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 3519s Fetched 255 kB in 1s (198 kB/s) 3521s Reading package lists... 3521s Reading package lists... 3521s Building dependency tree... 3521s Reading state information... 3522s Calculating upgrade... 3523s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3523s Reading package lists... 3524s Building dependency tree... 3524s Reading state information... 3525s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3525s autopkgtest [18:25:19]: rebooting testbed after setup commands that affected boot 3688s Reading package lists... 3688s Building dependency tree... 3688s Reading state information... 3689s Starting pkgProblemResolver with broken count: 0 3689s Starting 2 pkgProblemResolver with broken count: 0 3689s Done 3691s The following additional packages will be installed: 3691s adwaita-icon-theme ant at-spi2-common ca-certificates-java default-jre 3691s default-jre-headless fontconfig fontconfig-config fonts-dejavu-core 3691s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 3691s humanity-icon-theme igv java-common java-wrappers libapache-pom-java 3691s libasound2 libasound2-data libatinject-jsr330-api-java libatk1.0-0 3691s libavahi-client3 libavahi-common-data libavahi-common3 libbatik-java 3691s libcairo2 libcolt-free-java libcommons-beanutils-java libcommons-codec-java 3691s libcommons-collections3-java libcommons-compress-java 3691s libcommons-configuration-java libcommons-io-java libcommons-jexl2-java 3691s libcommons-lang-java libcommons-lang3-java libcommons-logging-java 3691s libcommons-math3-java libcommons-parent-java libcups2 libdatrie1 libdeflate0 3691s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libdsiutils-java 3691s liberror-prone-java libfastutil-java libfontconfig1 libgdk-pixbuf-2.0-0 3691s libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa 3691s libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 3691s libgtk2.0-0 libgtk2.0-common libguava-java libharfbuzz0b libhtsjdk-java 3691s libhttpclient-java libhttpcore-java libicb-utils-java libicu4j-java 3691s libjaxp1.3-java libjbig0 libjide-oss-java libjpeg-turbo8 libjpeg8 3691s libjsap-java libjsr305-java liblcms2-2 liblerc4 liblightcouch-java libllvm17 3691s liblog4j1.2-java liblog4j2-java liblogback-java libmbedcrypto7 libmbedtls14 3691s libmbedx509-1 libmjson-java libmongodb-java libnb-absolutelayout-java 3691s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 3691s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 3691s libprotobuf-java librhino-java libsharpyuv0 libslf4j-java libsnappy-java 3691s libsnappy-jni libsnappy1v5 libswing-layout-java libthai-data libthai0 3691s libtiff6 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 3691s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 3691s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 3691s libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 3691s libxmlgraphics-commons-java libxpp3-java libxrandr2 libxrender1 3691s libxshmfence1 libxstream-java libxtst6 libxxf86vm1 ncbi-vdb-data 3691s openjdk-21-jre openjdk-21-jre-headless ubuntu-mono unzip x11-common 3691s Suggested packages: 3691s ant-doc default-jdk | java-compiler | java-sdk libasound2-plugins alsa-utils 3691s libatinject-jsr330-api-java-doc libcommons-collections3-java-doc libasm-java 3691s libxz-java libcommons-digester-java libcommons-jxpath-java 3691s libcommons-vfs-java libxml-commons-resolver1.1-java libcommons-io-java-doc 3691s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 3691s cups-common libgoogle-gson-java-doc gvfs picard-tools libjide-oss-java-doc 3691s libjsap-java-doc libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc 3691s libmail-java libactivation-java libcommons-csv-java 3691s libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java 3691s libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjansi-java 3691s libjctools-java libjeromq-java libwoodstox-java libjanino-java 3691s libjetty9-java libservlet-api-java libtomcat9-java libngs-java-doc pcscd 3691s rhino libswing-layout-java-doc libxmlgraphics-commons-java-doc 3691s libcglib-nodep-java libdom4j-java libjdom1-java libjdom2-java 3691s libjettison-java libjoda-time-java libkxml2-java libxom-java libnss-mdns 3691s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 3691s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic zip 3691s Recommended packages: 3691s librsvg2-common ant-optional libmariadb-java alsa-ucm-conf 3691s alsa-topology-conf libgdk-pixbuf2.0-bin libgl1-amber-dri libgail-common 3691s libgtk2.0-bin mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni 3691s fonts-dejavu-extra 3691s The following NEW packages will be installed: 3691s adwaita-icon-theme ant at-spi2-common autopkgtest-satdep 3691s ca-certificates-java default-jre default-jre-headless fontconfig 3691s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache 3691s hicolor-icon-theme humanity-icon-theme igv java-common java-wrappers 3691s libapache-pom-java libasound2 libasound2-data libatinject-jsr330-api-java 3691s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 3691s libbatik-java libcairo2 libcolt-free-java libcommons-beanutils-java 3691s libcommons-codec-java libcommons-collections3-java libcommons-compress-java 3691s libcommons-configuration-java libcommons-io-java libcommons-jexl2-java 3691s libcommons-lang-java libcommons-lang3-java libcommons-logging-java 3691s libcommons-math3-java libcommons-parent-java libcups2 libdatrie1 libdeflate0 3691s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libdsiutils-java 3691s liberror-prone-java libfastutil-java libfontconfig1 libgdk-pixbuf-2.0-0 3691s libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa 3691s libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 3691s libgtk2.0-0 libgtk2.0-common libguava-java libharfbuzz0b libhtsjdk-java 3691s libhttpclient-java libhttpcore-java libicb-utils-java libicu4j-java 3691s libjaxp1.3-java libjbig0 libjide-oss-java libjpeg-turbo8 libjpeg8 3691s libjsap-java libjsr305-java liblcms2-2 liblerc4 liblightcouch-java libllvm17 3691s liblog4j1.2-java liblog4j2-java liblogback-java libmbedcrypto7 libmbedtls14 3691s libmbedx509-1 libmjson-java libmongodb-java libnb-absolutelayout-java 3691s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 3691s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 3691s libprotobuf-java librhino-java libsharpyuv0 libslf4j-java libsnappy-java 3691s libsnappy-jni libsnappy1v5 libswing-layout-java libthai-data libthai0 3691s libtiff6 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 3691s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 3691s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 3691s libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 3691s libxmlgraphics-commons-java libxpp3-java libxrandr2 libxrender1 3691s libxshmfence1 libxstream-java libxtst6 libxxf86vm1 ncbi-vdb-data 3691s openjdk-21-jre openjdk-21-jre-headless ubuntu-mono unzip x11-common 3691s 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. 3691s Need to get 162 MB/162 MB of archives. 3691s After this operation, 521 MB of additional disk space will be used. 3691s Get:1 /tmp/autopkgtest.w2H4x5/6-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 3691s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 3691s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 3692s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 3692s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 3692s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 3692s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 3692s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 3692s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 3692s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 3692s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 3692s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 3692s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 3692s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 3693s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 3693s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 3693s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 3693s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 3693s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 3693s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 3693s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 3693s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 3693s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 3693s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 3693s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 3693s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 3693s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 3693s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 3693s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 3693s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 3693s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 3694s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 3694s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 3696s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 3696s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 ant all 1.10.14-1 [2147 kB] 3696s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 3696s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 3696s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 3696s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 3696s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 3696s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 3696s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 3696s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 3696s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 3696s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 3696s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 3696s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 3696s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 3696s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 3696s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 3696s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 3696s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 3696s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 3696s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 3696s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 3696s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 3696s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 3696s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 3696s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 3697s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 3697s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 3697s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 3697s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 3697s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 3697s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 3697s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 3697s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 3697s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 3697s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 3697s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 3697s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 3697s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 3697s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 3697s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 3697s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 3697s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 3698s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 3698s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 3698s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 3698s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 3698s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 3698s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 3698s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 3698s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 3698s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 3698s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 java-wrappers all 0.4 [8662 B] 3698s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjaxp1.3-java all 1.3.05-6 [227 kB] 3698s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB] 3698s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 3698s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 3698s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 3698s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 3698s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libxmlgraphics-commons-java all 2.8-2 [619 kB] 3698s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libbatik-java all 1.17+dfsg-1 [3877 kB] 3698s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 3698s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math3-java all 3.6.1-3 [2016 kB] 3698s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] 3698s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] 3698s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] 3698s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] 3698s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libguava-java all 32.0.1-1 [2692 kB] 3698s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libxpp3-java all 1.1.4c-3 [292 kB] 3699s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libxstream-java all 1.4.20-1 [561 kB] 3699s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsap-java all 2.1-5 [100 kB] 3699s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 3699s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 liblogback-java all 1:1.2.11-5 [697 kB] 3699s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 3699s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-configuration-java all 1.10-6 [342 kB] 3699s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-collections3-java all 3.2.2-3 [526 kB] 3699s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libdsiutils-java all 2.7.3+dfsg-1 [511 kB] 3699s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 3699s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 3699s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 3699s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 3699s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 3699s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 3699s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 3699s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 3699s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 3699s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 3699s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 3699s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 3699s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 3699s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 3699s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 3699s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 3699s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 3699s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-beanutils-java all 1.9.4-2 [228 kB] 3699s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libicu4j-java all 73.2-1 [16.4 MB] 3700s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libcolt-free-java all 1.2.0+dfsg-8 [438 kB] 3700s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 3700s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libicb-utils-java all 2.0.1+git20161002.afee1d9-5 [80.9 kB] 3700s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libjide-oss-java all 3.7.6+dfsg-2 [1312 kB] 3700s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 3700s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 3700s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 3700s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 3700s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 3700s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 3700s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libnb-absolutelayout-java all 12.1-3 [7292 B] 3700s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libprotobuf-java all 3.21.12-8ubuntu5 [1201 kB] 3701s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 libswing-layout-java all 1.0.4-4.1 [44.4 kB] 3701s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 igv all 2.17.3+dfsg-1 [3254 kB] 3702s Fetched 162 MB in 10s (16.8 MB/s) 3702s Selecting previously unselected package libgdk-pixbuf2.0-common. 3702s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 3702s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 3702s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 3702s Selecting previously unselected package libjpeg-turbo8:arm64. 3702s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 3702s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 3702s Selecting previously unselected package libjpeg8:arm64. 3702s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 3702s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 3702s Selecting previously unselected package libdeflate0:arm64. 3702s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 3702s Unpacking libdeflate0:arm64 (1.19-1) ... 3702s Selecting previously unselected package libjbig0:arm64. 3702s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 3702s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 3702s Selecting previously unselected package liblerc4:arm64. 3702s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 3702s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 3702s Selecting previously unselected package libsharpyuv0:arm64. 3702s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 3702s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 3703s Selecting previously unselected package libwebp7:arm64. 3703s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 3703s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 3703s Selecting previously unselected package libtiff6:arm64. 3703s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 3703s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 3703s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 3703s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 3703s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 3703s Selecting previously unselected package gtk-update-icon-cache. 3703s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 3703s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 3703s Selecting previously unselected package hicolor-icon-theme. 3703s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 3703s Unpacking hicolor-icon-theme (0.17-2) ... 3703s Selecting previously unselected package humanity-icon-theme. 3703s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 3703s Unpacking humanity-icon-theme (0.6.16) ... 3706s Selecting previously unselected package ubuntu-mono. 3706s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 3706s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 3707s Selecting previously unselected package adwaita-icon-theme. 3707s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 3707s Unpacking adwaita-icon-theme (46~rc-1) ... 3707s Selecting previously unselected package ca-certificates-java. 3707s Preparing to unpack .../015-ca-certificates-java_20240118_all.deb ... 3707s Unpacking ca-certificates-java (20240118) ... 3707s Selecting previously unselected package java-common. 3707s Preparing to unpack .../016-java-common_0.75+exp1_all.deb ... 3707s Unpacking java-common (0.75+exp1) ... 3707s Selecting previously unselected package libavahi-common-data:arm64. 3707s Preparing to unpack .../017-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 3707s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 3708s Selecting previously unselected package libavahi-common3:arm64. 3708s Preparing to unpack .../018-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 3708s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 3708s Selecting previously unselected package libavahi-client3:arm64. 3708s Preparing to unpack .../019-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 3708s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 3708s Selecting previously unselected package libcups2:arm64. 3708s Preparing to unpack .../020-libcups2_2.4.6-0ubuntu3_arm64.deb ... 3708s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 3708s Selecting previously unselected package liblcms2-2:arm64. 3708s Preparing to unpack .../021-liblcms2-2_2.14-2_arm64.deb ... 3708s Unpacking liblcms2-2:arm64 (2.14-2) ... 3708s Selecting previously unselected package fonts-dejavu-mono. 3708s Preparing to unpack .../022-fonts-dejavu-mono_2.37-8_all.deb ... 3708s Unpacking fonts-dejavu-mono (2.37-8) ... 3708s Selecting previously unselected package fonts-dejavu-core. 3708s Preparing to unpack .../023-fonts-dejavu-core_2.37-8_all.deb ... 3708s Unpacking fonts-dejavu-core (2.37-8) ... 3708s Selecting previously unselected package fontconfig-config. 3708s Preparing to unpack .../024-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 3709s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 3709s Selecting previously unselected package libfontconfig1:arm64. 3709s Preparing to unpack .../025-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 3709s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 3709s Selecting previously unselected package libasound2-data. 3709s Preparing to unpack .../026-libasound2-data_1.2.10-3build1_all.deb ... 3709s Unpacking libasound2-data (1.2.10-3build1) ... 3709s Selecting previously unselected package libasound2:arm64. 3709s Preparing to unpack .../027-libasound2_1.2.10-3build1_arm64.deb ... 3709s Unpacking libasound2:arm64 (1.2.10-3build1) ... 3709s Selecting previously unselected package libgraphite2-3:arm64. 3709s Preparing to unpack .../028-libgraphite2-3_1.3.14-2_arm64.deb ... 3709s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 3709s Selecting previously unselected package libharfbuzz0b:arm64. 3709s Preparing to unpack .../029-libharfbuzz0b_8.3.0-2_arm64.deb ... 3709s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 3709s Selecting previously unselected package libpcsclite1:arm64. 3709s Preparing to unpack .../030-libpcsclite1_2.0.0-1_arm64.deb ... 3709s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 3709s Selecting previously unselected package openjdk-21-jre-headless:arm64. 3709s Preparing to unpack .../031-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 3709s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 3712s Selecting previously unselected package default-jre-headless. 3712s Preparing to unpack .../032-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 3712s Unpacking default-jre-headless (2:1.21-75+exp1) ... 3712s Selecting previously unselected package ant. 3712s Preparing to unpack .../033-ant_1.10.14-1_all.deb ... 3712s Unpacking ant (1.10.14-1) ... 3713s Selecting previously unselected package at-spi2-common. 3713s Preparing to unpack .../034-at-spi2-common_2.50.0-1_all.deb ... 3713s Unpacking at-spi2-common (2.50.0-1) ... 3713s Selecting previously unselected package libgtk2.0-common. 3713s Preparing to unpack .../035-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 3713s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 3713s Selecting previously unselected package libatk1.0-0:arm64. 3713s Preparing to unpack .../036-libatk1.0-0_2.50.0-1_arm64.deb ... 3713s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 3713s Selecting previously unselected package libpixman-1-0:arm64. 3713s Preparing to unpack .../037-libpixman-1-0_0.42.2-1_arm64.deb ... 3713s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 3713s Selecting previously unselected package libxcb-render0:arm64. 3713s Preparing to unpack .../038-libxcb-render0_1.15-1_arm64.deb ... 3713s Unpacking libxcb-render0:arm64 (1.15-1) ... 3713s Selecting previously unselected package libxcb-shm0:arm64. 3713s Preparing to unpack .../039-libxcb-shm0_1.15-1_arm64.deb ... 3713s Unpacking libxcb-shm0:arm64 (1.15-1) ... 3713s Selecting previously unselected package libxrender1:arm64. 3713s Preparing to unpack .../040-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 3713s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 3713s Selecting previously unselected package libcairo2:arm64. 3713s Preparing to unpack .../041-libcairo2_1.18.0-1_arm64.deb ... 3713s Unpacking libcairo2:arm64 (1.18.0-1) ... 3713s Selecting previously unselected package fontconfig. 3713s Preparing to unpack .../042-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 3713s Unpacking fontconfig (2.15.0-1ubuntu1) ... 3713s Selecting previously unselected package libthai-data. 3713s Preparing to unpack .../043-libthai-data_0.1.29-2_all.deb ... 3713s Unpacking libthai-data (0.1.29-2) ... 3713s Selecting previously unselected package libdatrie1:arm64. 3713s Preparing to unpack .../044-libdatrie1_0.2.13-3_arm64.deb ... 3713s Unpacking libdatrie1:arm64 (0.2.13-3) ... 3713s Selecting previously unselected package libthai0:arm64. 3713s Preparing to unpack .../045-libthai0_0.1.29-2_arm64.deb ... 3713s Unpacking libthai0:arm64 (0.1.29-2) ... 3713s Selecting previously unselected package libpango-1.0-0:arm64. 3714s Preparing to unpack .../046-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 3714s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 3714s Selecting previously unselected package libpangoft2-1.0-0:arm64. 3714s Preparing to unpack .../047-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 3714s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 3714s Selecting previously unselected package libpangocairo-1.0-0:arm64. 3714s Preparing to unpack .../048-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 3714s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 3714s Selecting previously unselected package libxcomposite1:arm64. 3714s Preparing to unpack .../049-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 3714s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 3714s Selecting previously unselected package libxfixes3:arm64. 3714s Preparing to unpack .../050-libxfixes3_1%3a6.0.0-2_arm64.deb ... 3714s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 3714s Selecting previously unselected package libxcursor1:arm64. 3714s Preparing to unpack .../051-libxcursor1_1%3a1.2.1-1_arm64.deb ... 3714s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 3714s Selecting previously unselected package libxdamage1:arm64. 3714s Preparing to unpack .../052-libxdamage1_1%3a1.1.6-1_arm64.deb ... 3714s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 3714s Selecting previously unselected package libxi6:arm64. 3714s Preparing to unpack .../053-libxi6_2%3a1.8.1-1_arm64.deb ... 3714s Unpacking libxi6:arm64 (2:1.8.1-1) ... 3714s Selecting previously unselected package libxinerama1:arm64. 3714s Preparing to unpack .../054-libxinerama1_2%3a1.1.4-3_arm64.deb ... 3714s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 3714s Selecting previously unselected package libxrandr2:arm64. 3714s Preparing to unpack .../055-libxrandr2_2%3a1.5.2-2_arm64.deb ... 3714s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 3714s Selecting previously unselected package libgtk2.0-0:arm64. 3714s Preparing to unpack .../056-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 3714s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 3714s Selecting previously unselected package libglvnd0:arm64. 3714s Preparing to unpack .../057-libglvnd0_1.7.0-1_arm64.deb ... 3714s Unpacking libglvnd0:arm64 (1.7.0-1) ... 3714s Selecting previously unselected package libglapi-mesa:arm64. 3714s Preparing to unpack .../058-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 3714s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 3715s Selecting previously unselected package libx11-xcb1:arm64. 3715s Preparing to unpack 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libxcb-randr0:arm64 (1.15-1) ... 3715s Selecting previously unselected package libxcb-sync1:arm64. 3715s Preparing to unpack .../065-libxcb-sync1_1.15-1_arm64.deb ... 3715s Unpacking libxcb-sync1:arm64 (1.15-1) ... 3715s Selecting previously unselected package libxcb-xfixes0:arm64. 3715s Preparing to unpack .../066-libxcb-xfixes0_1.15-1_arm64.deb ... 3715s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 3715s Selecting previously unselected package libxshmfence1:arm64. 3715s Preparing to unpack .../067-libxshmfence1_1.3-1build4_arm64.deb ... 3715s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 3715s Selecting previously unselected package libxxf86vm1:arm64. 3715s Preparing to unpack .../068-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 3715s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 3715s Selecting previously unselected package libvulkan1:arm64. 3715s Preparing to unpack .../069-libvulkan1_1.3.275.0-1_arm64.deb ... 3715s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 3715s Selecting previously unselected package libdrm-amdgpu1:arm64. 3715s Preparing to unpack .../070-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 3715s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 3715s Selecting previously unselected package libdrm-nouveau2:arm64. 3715s Preparing to unpack .../071-libdrm-nouveau2_2.4.120-2_arm64.deb ... 3715s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 3715s Selecting previously unselected package libdrm-radeon1:arm64. 3715s Preparing to unpack .../072-libdrm-radeon1_2.4.120-2_arm64.deb ... 3715s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 3716s Selecting previously unselected package libllvm17:arm64. 3716s Preparing to unpack .../073-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 3716s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 3717s Selecting previously unselected package libgl1-mesa-dri:arm64. 3717s Preparing to unpack .../074-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 3717s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 3718s Selecting previously unselected package libglx-mesa0:arm64. 3718s Preparing to unpack .../075-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 3718s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 3718s Selecting previously unselected package libglx0:arm64. 3718s Preparing to unpack .../076-libglx0_1.7.0-1_arm64.deb ... 3718s Unpacking libglx0:arm64 (1.7.0-1) ... 3718s Selecting previously unselected package libgl1:arm64. 3718s Preparing to unpack .../077-libgl1_1.7.0-1_arm64.deb ... 3718s Unpacking libgl1:arm64 (1.7.0-1) ... 3718s Selecting previously unselected package libgif7:arm64. 3718s Preparing to unpack .../078-libgif7_5.2.1-2.5_arm64.deb ... 3718s Unpacking libgif7:arm64 (5.2.1-2.5) ... 3718s Selecting previously unselected package x11-common. 3718s Preparing to unpack .../079-x11-common_1%3a7.7+23ubuntu2_all.deb ... 3718s Unpacking x11-common (1:7.7+23ubuntu2) ... 3718s Selecting previously unselected package libxtst6:arm64. 3718s Preparing to unpack .../080-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 3718s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 3718s Selecting previously unselected package openjdk-21-jre:arm64. 3718s Preparing to unpack .../081-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 3718s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 3718s Selecting previously unselected package default-jre. 3718s Preparing to unpack .../082-default-jre_2%3a1.21-75+exp1_arm64.deb ... 3718s Unpacking default-jre (2:1.21-75+exp1) ... 3718s Selecting previously unselected package unzip. 3718s Preparing to unpack .../083-unzip_6.0-28ubuntu3_arm64.deb ... 3718s Unpacking unzip (6.0-28ubuntu3) ... 3718s Selecting previously unselected package java-wrappers. 3719s Preparing to unpack .../084-java-wrappers_0.4_all.deb ... 3719s Unpacking java-wrappers (0.4) ... 3719s Selecting previously unselected package libjaxp1.3-java. 3719s Preparing to unpack .../085-libjaxp1.3-java_1.3.05-6_all.deb ... 3719s Unpacking libjaxp1.3-java (1.3.05-6) ... 3719s Selecting previously unselected package libxml-commons-external-java. 3719s Preparing to unpack .../086-libxml-commons-external-java_1.4.01-6_all.deb ... 3719s Unpacking libxml-commons-external-java (1.4.01-6) ... 3719s Selecting previously unselected package libapache-pom-java. 3719s Preparing to unpack .../087-libapache-pom-java_29-2_all.deb ... 3719s Unpacking libapache-pom-java (29-2) ... 3719s Selecting previously unselected package libcommons-parent-java. 3719s Preparing to unpack .../088-libcommons-parent-java_56-1_all.deb ... 3719s Unpacking libcommons-parent-java (56-1) ... 3719s Selecting previously unselected package libcommons-io-java. 3719s Preparing to unpack .../089-libcommons-io-java_2.11.0-2_all.deb ... 3719s Unpacking libcommons-io-java (2.11.0-2) ... 3719s Selecting previously unselected package libcommons-logging-java. 3719s Preparing to unpack .../090-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 3719s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 3719s Selecting previously unselected package libxmlgraphics-commons-java. 3719s Preparing to unpack .../091-libxmlgraphics-commons-java_2.8-2_all.deb ... 3719s Unpacking libxmlgraphics-commons-java (2.8-2) ... 3719s Selecting previously unselected package libbatik-java. 3719s Preparing to unpack .../092-libbatik-java_1.17+dfsg-1_all.deb ... 3719s Unpacking libbatik-java (1.17+dfsg-1) ... 3719s Selecting previously unselected package libcommons-lang3-java. 3719s Preparing to unpack .../093-libcommons-lang3-java_3.14.0-1_all.deb ... 3719s Unpacking libcommons-lang3-java (3.14.0-1) ... 3719s Selecting previously unselected package libcommons-math3-java. 3720s Preparing to unpack .../094-libcommons-math3-java_3.6.1-3_all.deb ... 3720s Unpacking libcommons-math3-java (3.6.1-3) ... 3720s Selecting previously unselected package libfastutil-java. 3720s Preparing to unpack .../095-libfastutil-java_8.5.12+dfsg-1_all.deb ... 3720s Unpacking libfastutil-java (8.5.12+dfsg-1) ... 3720s Selecting previously unselected package libatinject-jsr330-api-java. 3720s Preparing to unpack .../096-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... 3720s Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... 3720s Selecting previously unselected package liberror-prone-java. 3720s Preparing to unpack .../097-liberror-prone-java_2.18.0-1_all.deb ... 3720s Unpacking liberror-prone-java (2.18.0-1) ... 3720s Selecting previously unselected package libjsr305-java. 3720s Preparing to unpack .../098-libjsr305-java_0.1~+svn49-11_all.deb ... 3720s Unpacking libjsr305-java (0.1~+svn49-11) ... 3720s Selecting previously unselected package libguava-java. 3720s Preparing to unpack .../099-libguava-java_32.0.1-1_all.deb ... 3720s Unpacking libguava-java (32.0.1-1) ... 3721s Selecting previously unselected package libxpp3-java. 3721s Preparing to unpack .../100-libxpp3-java_1.1.4c-3_all.deb ... 3721s Unpacking libxpp3-java (1.1.4c-3) ... 3721s Selecting previously unselected package libxstream-java. 3721s Preparing to unpack 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libcommons-configuration-java (1.10-6) ... 3721s Selecting previously unselected package libcommons-collections3-java. 3721s Preparing to unpack .../107-libcommons-collections3-java_3.2.2-3_all.deb ... 3721s Unpacking libcommons-collections3-java (3.2.2-3) ... 3721s Selecting previously unselected package libdsiutils-java. 3721s Preparing to unpack .../108-libdsiutils-java_2.7.3+dfsg-1_all.deb ... 3721s Unpacking libdsiutils-java (2.7.3+dfsg-1) ... 3721s Selecting previously unselected package libgoogle-gson-java. 3721s Preparing to unpack .../109-libgoogle-gson-java_2.10.1-1_all.deb ... 3721s Unpacking libgoogle-gson-java (2.10.1-1) ... 3721s Selecting previously unselected package libcommons-compress-java. 3721s Preparing to unpack .../110-libcommons-compress-java_1.25.0-1_all.deb ... 3721s Unpacking libcommons-compress-java (1.25.0-1) ... 3721s Selecting previously unselected package libcommons-jexl2-java. 3722s Preparing to unpack .../111-libcommons-jexl2-java_2.1.1-6_all.deb ... 3722s Unpacking libcommons-jexl2-java (2.1.1-6) ... 3722s Selecting previously unselected package libmjson-java. 3722s Preparing to unpack .../112-libmjson-java_1.4.0-3_all.deb ... 3722s Unpacking libmjson-java (1.4.0-3) ... 3722s Selecting previously unselected package libmbedcrypto7:arm64. 3722s Preparing to unpack .../113-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 3722s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 3722s Selecting previously unselected package libmbedx509-1:arm64. 3722s Preparing to unpack .../114-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 3722s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 3722s Selecting previously unselected package libmbedtls14:arm64. 3722s Preparing to unpack .../115-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 3722s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 3722s Selecting previously unselected package ncbi-vdb-data. 3722s Preparing to unpack .../116-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 3722s Unpacking ncbi-vdb-data 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(1.7.14-2.1) ... 3722s Selecting previously unselected package libsnappy1v5:arm64. 3722s Preparing to unpack .../122-libsnappy1v5_1.1.10-1_arm64.deb ... 3722s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 3722s Selecting previously unselected package libsnappy-jni. 3723s Preparing to unpack .../123-libsnappy-jni_1.1.10.5-1_arm64.deb ... 3723s Unpacking libsnappy-jni (1.1.10.5-1) ... 3723s Selecting previously unselected package libsnappy-java. 3723s Preparing to unpack .../124-libsnappy-java_1.1.10.5-1_all.deb ... 3723s Unpacking libsnappy-java (1.1.10.5-1) ... 3723s Selecting previously unselected package libhtsjdk-java. 3723s Preparing to unpack .../125-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 3723s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 3723s Selecting previously unselected package libcommons-beanutils-java. 3723s Preparing to unpack .../126-libcommons-beanutils-java_1.9.4-2_all.deb ... 3723s Unpacking libcommons-beanutils-java (1.9.4-2) ... 3723s Selecting previously unselected 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... 3724s Unpacking liblog4j2-java (2.19.0-2) ... 3724s Selecting previously unselected package libnb-absolutelayout-java. 3724s Preparing to unpack .../138-libnb-absolutelayout-java_12.1-3_all.deb ... 3724s Unpacking libnb-absolutelayout-java (12.1-3) ... 3724s Selecting previously unselected package libprotobuf-java. 3724s Preparing to unpack .../139-libprotobuf-java_3.21.12-8ubuntu5_all.deb ... 3724s Unpacking libprotobuf-java (3.21.12-8ubuntu5) ... 3724s Selecting previously unselected package libswing-layout-java. 3725s Preparing to unpack .../140-libswing-layout-java_1.0.4-4.1_all.deb ... 3725s Unpacking libswing-layout-java (1.0.4-4.1) ... 3725s Selecting previously unselected package igv. 3725s Preparing to unpack .../141-igv_2.17.3+dfsg-1_all.deb ... 3725s Unpacking igv (2.17.3+dfsg-1) ... 3725s Selecting previously unselected package autopkgtest-satdep. 3725s Preparing to unpack .../142-6-autopkgtest-satdep.deb ... 3725s Unpacking autopkgtest-satdep (0) ... 3725s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 3725s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 3725s Setting up liblcms2-2:arm64 (2.14-2) ... 3725s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 3725s Setting up libfastutil-java (8.5.12+dfsg-1) ... 3725s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 3725s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 3725s Setting up libslf4j-java (1.7.32-1) ... 3725s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 3725s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 3725s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 3725s Setting up libjide-oss-java (3.7.6+dfsg-2) ... 3725s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 3725s Setting up libjsr305-java (0.1~+svn49-11) ... 3725s Setting up hicolor-icon-theme (0.17-2) ... 3725s Setting up libxi6:arm64 (2:1.8.1-1) ... 3725s Setting up libicu4j-java (73.2-1) ... 3725s Setting up java-common (0.75+exp1) ... 3725s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 3725s Setting up libdatrie1:arm64 (0.2.13-3) ... 3725s Setting up libxcb-render0:arm64 (1.15-1) ... 3725s Setting up liblogback-java (1:1.2.11-5) ... 3725s Setting up libswing-layout-java (1.0.4-4.1) ... 3725s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 3725s Setting up libglvnd0:arm64 (1.7.0-1) ... 3725s Setting up libgoogle-gson-java (2.10.1-1) ... 3725s Setting up libmjson-java (1.4.0-3) ... 3725s Setting up libxcb-glx0:arm64 (1.15-1) ... 3725s Setting up unzip (6.0-28ubuntu3) ... 3725s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 3725s Setting up x11-common (1:7.7+23ubuntu2) ... 3726s Setting up libdeflate0:arm64 (1.19-1) ... 3726s Setting up liblog4j1.2-java (1.2.17-11) ... 3726s Setting up libxcb-shm0:arm64 (1.15-1) ... 3726s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 3726s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 3726s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 3726s Setting up libxcb-present0:arm64 (1.15-1) ... 3726s Setting up libcommons-collections3-java (3.2.2-3) ... 3726s Setting up libasound2-data (1.2.10-3build1) ... 3726s Setting up libnb-absolutelayout-java (12.1-3) ... 3726s Setting up librhino-java (1.7.14-2.1) ... 3726s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 3726s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 3726s Setting up libxcb-sync1:arm64 (1.15-1) ... 3726s Setting up libapache-pom-java (29-2) ... 3726s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 3726s Setting up libxpp3-java (1.1.4c-3) ... 3726s Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... 3726s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 3726s Setting up fonts-dejavu-mono (2.37-8) ... 3726s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 3726s Setting up fonts-dejavu-core (2.37-8) ... 3726s Setting up libpcsclite1:arm64 (2.0.0-1) ... 3726s Setting up libmongodb-java (3.6.3-2) ... 3726s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 3726s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 3726s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 3726s Setting up libwebp7:arm64 (1.3.2-0.4) ... 3726s Setting up libcolt-free-java (1.2.0+dfsg-8) ... 3726s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 3726s Setting up libgif7:arm64 (5.2.1-2.5) ... 3726s Setting up libxshmfence1:arm64 (1.3-1build4) ... 3726s Setting up at-spi2-common (2.50.0-1) ... 3726s Setting up libxcb-randr0:arm64 (1.15-1) ... 3726s Setting up libxml-commons-external-java (1.4.01-6) ... 3726s Setting up libasound2:arm64 (1.2.10-3build1) ... 3726s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 3726s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 3726s Setting up libthai-data (0.1.29-2) ... 3726s Setting up libcommons-math3-java (3.6.1-3) ... 3726s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 3726s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 3726s Setting up libhttpcore-java (4.4.16-1) ... 3726s Setting up ca-certificates-java (20240118) ... 3726s No JRE found. Skipping Java certificates setup. 3726s Setting up libjaxp1.3-java (1.3.05-6) ... 3726s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 3726s Setting up libsnappy-jni (1.1.10.5-1) ... 3726s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 3726s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 3726s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 3726s Setting up libxstream-java (1.4.20-1) ... 3726s Setting up java-wrappers (0.4) ... 3726s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 3726s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 3726s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 3727s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 3727s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 3727s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 3727s Setting up libcommons-parent-java (56-1) ... 3727s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 3727s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 3727s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 3727s Setting up libcommons-lang-java (2.6-10) ... 3727s Setting up libcommons-jexl2-java (2.1.1-6) ... 3727s Setting up libthai0:arm64 (0.1.29-2) ... 3727s Setting up libcommons-lang3-java (3.14.0-1) ... 3727s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 3727s Setting up libcommons-beanutils-java (1.9.4-2) ... 3727s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 3727s Setting up libsnappy-java (1.1.10.5-1) ... 3727s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 3727s Setting up libcommons-configuration-java (1.10-6) ... 3727s Setting up libcommons-codec-java (1.16.0-1) ... 3727s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 3727s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 3727s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 3727s Setting up fontconfig (2.15.0-1ubuntu1) ... 3729s Regenerating fonts cache... done. 3729s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 3729s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 3729s Setting up libglx0:arm64 (1.7.0-1) ... 3729s Setting up libcommons-compress-java (1.25.0-1) ... 3729s Setting up libcommons-io-java (2.11.0-2) ... 3729s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 3729s Setting up libxmlgraphics-commons-java (2.8-2) ... 3729s Setting up libcairo2:arm64 (1.18.0-1) ... 3729s Setting up libgl1:arm64 (1.7.0-1) ... 3729s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 3729s Setting up libhttpclient-java (4.5.14-1) ... 3729s Setting up liblightcouch-java (0.2.0-1) ... 3729s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 3729s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 3729s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 3729s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 3729s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 3729s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 3729s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 3729s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 3729s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 3729s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 3729s Setting up libbatik-java (1.17+dfsg-1) ... 3729s Setting up liblog4j2-java (2.19.0-2) ... 3729s Setting up adwaita-icon-theme (46~rc-1) ... 3729s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 3729s Setting up liberror-prone-java (2.18.0-1) ... 3729s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 3729s Setting up humanity-icon-theme (0.6.16) ... 3729s Setting up libguava-java (32.0.1-1) ... 3729s Setting up libprotobuf-java (3.21.12-8ubuntu5) ... 3729s Setting up ubuntu-mono (24.04-0ubuntu1) ... 3729s Processing triggers for man-db (2.12.0-3) ... 3731s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3731s Processing triggers for ca-certificates-java (20240118) ... 3732s Adding debian:ACCVRAIZ1.pem 3732s Adding debian:AC_RAIZ_FNMT-RCM.pem 3732s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 3732s Adding debian:ANF_Secure_Server_Root_CA.pem 3732s Adding debian:Actalis_Authentication_Root_CA.pem 3732s Adding debian:AffirmTrust_Commercial.pem 3732s Adding debian:AffirmTrust_Networking.pem 3732s Adding debian:AffirmTrust_Premium.pem 3732s Adding debian:AffirmTrust_Premium_ECC.pem 3732s Adding debian:Amazon_Root_CA_1.pem 3732s Adding debian:Amazon_Root_CA_2.pem 3732s Adding debian:Amazon_Root_CA_3.pem 3732s Adding debian:Amazon_Root_CA_4.pem 3732s Adding debian:Atos_TrustedRoot_2011.pem 3732s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 3732s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 3732s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 3732s Adding debian:BJCA_Global_Root_CA1.pem 3732s Adding debian:BJCA_Global_Root_CA2.pem 3732s Adding debian:Baltimore_CyberTrust_Root.pem 3732s Adding debian:Buypass_Class_2_Root_CA.pem 3732s Adding debian:Buypass_Class_3_Root_CA.pem 3732s Adding debian:CA_Disig_Root_R2.pem 3732s Adding debian:CFCA_EV_ROOT.pem 3732s Adding debian:COMODO_Certification_Authority.pem 3732s Adding debian:COMODO_ECC_Certification_Authority.pem 3732s Adding debian:COMODO_RSA_Certification_Authority.pem 3732s Adding debian:Certainly_Root_E1.pem 3732s Adding debian:Certainly_Root_R1.pem 3732s Adding debian:Certigna.pem 3732s Adding debian:Certigna_Root_CA.pem 3732s Adding debian:Certum_EC-384_CA.pem 3732s Adding debian:Certum_Trusted_Network_CA.pem 3732s Adding debian:Certum_Trusted_Network_CA_2.pem 3732s Adding debian:Certum_Trusted_Root_CA.pem 3732s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 3732s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 3732s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 3732s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 3732s Adding debian:Comodo_AAA_Services_root.pem 3732s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 3732s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 3732s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 3732s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 3732s Adding debian:DigiCert_Assured_ID_Root_CA.pem 3732s Adding debian:DigiCert_Assured_ID_Root_G2.pem 3732s Adding debian:DigiCert_Assured_ID_Root_G3.pem 3732s Adding debian:DigiCert_Global_Root_CA.pem 3732s Adding debian:DigiCert_Global_Root_G2.pem 3732s Adding debian:DigiCert_Global_Root_G3.pem 3732s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 3732s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 3732s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 3732s Adding debian:DigiCert_Trusted_Root_G4.pem 3732s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 3732s Adding debian:Entrust_Root_Certification_Authority.pem 3732s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 3732s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 3732s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 3732s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 3733s Adding debian:GLOBALTRUST_2020.pem 3733s Adding debian:GTS_Root_R1.pem 3733s Adding debian:GTS_Root_R2.pem 3733s Adding debian:GTS_Root_R3.pem 3733s Adding debian:GTS_Root_R4.pem 3733s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 3733s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 3733s Adding debian:GlobalSign_Root_CA.pem 3733s Adding debian:GlobalSign_Root_CA_-_R3.pem 3733s Adding debian:GlobalSign_Root_CA_-_R6.pem 3733s Adding debian:GlobalSign_Root_E46.pem 3733s Adding debian:GlobalSign_Root_R46.pem 3733s Adding debian:Go_Daddy_Class_2_CA.pem 3733s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 3733s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 3733s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 3733s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 3733s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 3733s Adding debian:HiPKI_Root_CA_-_G1.pem 3733s Adding debian:Hongkong_Post_Root_CA_3.pem 3733s Adding debian:ISRG_Root_X1.pem 3733s Adding debian:ISRG_Root_X2.pem 3733s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 3733s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 3733s Adding debian:Izenpe.com.pem 3733s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 3733s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 3733s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 3733s Adding debian:NAVER_Global_Root_Certification_Authority.pem 3733s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 3733s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 3733s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 3733s Adding debian:QuoVadis_Root_CA_1_G3.pem 3733s Adding debian:QuoVadis_Root_CA_2.pem 3733s Adding debian:QuoVadis_Root_CA_2_G3.pem 3733s Adding debian:QuoVadis_Root_CA_3.pem 3733s Adding debian:QuoVadis_Root_CA_3_G3.pem 3733s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 3733s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 3733s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 3733s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 3733s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 3733s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 3733s Adding debian:SZAFIR_ROOT_CA2.pem 3733s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 3733s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 3733s Adding debian:SecureSign_RootCA11.pem 3733s Adding debian:SecureTrust_CA.pem 3733s Adding debian:Secure_Global_CA.pem 3733s Adding debian:Security_Communication_ECC_RootCA1.pem 3733s Adding debian:Security_Communication_RootCA2.pem 3733s Adding debian:Security_Communication_RootCA3.pem 3733s Adding debian:Security_Communication_Root_CA.pem 3733s Adding debian:Starfield_Class_2_CA.pem 3733s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 3733s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 3733s Adding debian:SwissSign_Gold_CA_-_G2.pem 3733s Adding debian:SwissSign_Silver_CA_-_G2.pem 3733s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 3733s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 3733s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 3733s Adding debian:TWCA_Global_Root_CA.pem 3733s Adding debian:TWCA_Root_Certification_Authority.pem 3733s Adding debian:TeliaSonera_Root_CA_v1.pem 3733s Adding debian:Telia_Root_CA_v2.pem 3733s Adding debian:TrustAsia_Global_Root_CA_G3.pem 3733s Adding debian:TrustAsia_Global_Root_CA_G4.pem 3733s Adding debian:Trustwave_Global_Certification_Authority.pem 3733s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 3733s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 3733s Adding debian:TunTrust_Root_CA.pem 3733s Adding debian:UCA_Extended_Validation_Root.pem 3733s Adding debian:UCA_Global_G2_Root.pem 3733s Adding debian:USERTrust_ECC_Certification_Authority.pem 3733s Adding debian:USERTrust_RSA_Certification_Authority.pem 3733s Adding debian:XRamp_Global_CA_Root.pem 3733s Adding debian:certSIGN_ROOT_CA.pem 3733s Adding debian:certSIGN_Root_CA_G2.pem 3733s Adding debian:e-Szigno_Root_CA_2017.pem 3733s Adding debian:ePKI_Root_Certification_Authority.pem 3733s Adding debian:emSign_ECC_Root_CA_-_C3.pem 3733s Adding debian:emSign_ECC_Root_CA_-_G3.pem 3733s Adding debian:emSign_Root_CA_-_C1.pem 3733s Adding debian:emSign_Root_CA_-_G1.pem 3733s Adding debian:vTrus_ECC_Root_CA.pem 3733s Adding debian:vTrus_Root_CA.pem 3733s done. 3734s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 3734s Setting up ant (1.10.14-1) ... 3734s Setting up default-jre-headless (2:1.21-75+exp1) ... 3734s Setting up default-jre (2:1.21-75+exp1) ... 3734s Setting up libjsap-java (2.1-5) ... 3734s Setting up libdsiutils-java (2.7.3+dfsg-1) ... 3734s Setting up libicb-utils-java (2.0.1+git20161002.afee1d9-5) ... 3734s Setting up igv (2.17.3+dfsg-1) ... 3734s Setting up autopkgtest-satdep (0) ... 3745s (Reading database ... 90741 files and directories currently installed.) 3745s Removing autopkgtest-satdep (0) ... 3756s autopkgtest [18:29:10]: test command1: java -cp /usr/share/java/igv.jar org.broad.igv.tools.IgvTools index src/test/resources/htsjdk/samtools/example.bam 3756s autopkgtest [18:29:10]: test command1: [----------------------- 3757s Done 3758s autopkgtest [18:29:12]: test command1: -----------------------] 3758s command1 PASS 3758s autopkgtest [18:29:12]: test command1: - - - - - - - - - - results - - - - - - - - - - 3759s autopkgtest [18:29:13]: test picard-tools-run-unit-test: preparing testbed 3859s autopkgtest [18:30:53]: testbed dpkg architecture: arm64 3860s autopkgtest [18:30:54]: testbed apt version: 2.7.12 3860s autopkgtest [18:30:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 3861s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 3861s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 3863s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 3863s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 3863s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 3863s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 3863s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 3863s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 3863s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 3863s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 3864s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 3864s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 3864s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 3869s Fetched 9848 kB in 4s (2380 kB/s) 3870s Reading package lists... 3873s Reading package lists... 3874s Building dependency tree... 3874s Reading state information... 3875s Calculating upgrade... 3876s The following packages will be REMOVED: 3876s libssl3 3876s The following NEW packages will be installed: 3876s libssl3t64 3876s The following packages have been kept back: 3876s curl 3876s The following packages will be upgraded: 3876s openssl 3876s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 3876s Need to get 2777 kB of archives. 3876s After this operation, 139 kB of additional disk space will be used. 3876s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 3877s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 3878s Fetched 2777 kB in 1s (3927 kB/s) 3878s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 3878s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 3878s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 3878s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 3878s wget depends on libssl3 (>= 3.0.0). 3878s u-boot-tools depends on libssl3 (>= 3.0.0). 3878s tnftp depends on libssl3 (>= 3.0.0). 3878s tcpdump depends on libssl3 (>= 3.0.0). 3878s systemd-resolved depends on libssl3 (>= 3.0.0). 3878s systemd depends on libssl3 (>= 3.0.0). 3878s sudo depends on libssl3 (>= 3.0.0). 3878s sbsigntool depends on libssl3 (>= 3.0.0). 3878s rsync depends on libssl3 (>= 3.0.0). 3878s python3-cryptography depends on libssl3 (>= 3.0.0). 3878s openssh-server depends on libssl3 (>= 3.0.10). 3878s openssh-client depends on libssl3 (>= 3.0.10). 3878s mtd-utils depends on libssl3 (>= 3.0.0). 3878s mokutil depends on libssl3 (>= 3.0.0). 3878s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 3878s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 3878s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 3878s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 3878s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 3878s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 3878s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 3878s libnvme1 depends on libssl3 (>= 3.0.0). 3878s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 3878s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 3878s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 3878s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 3878s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 3878s kmod depends on libssl3 (>= 3.0.0). 3878s dhcpcd-base depends on libssl3 (>= 3.0.0). 3878s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 3878s 3878s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 3878s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 3878s Selecting previously unselected package libssl3t64:arm64. 3879s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 3879s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 3879s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 3879s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 3879s Setting up openssl (3.0.13-0ubuntu2) ... 3879s Processing triggers for man-db (2.12.0-3) ... 3880s Processing triggers for libc-bin (2.39-0ubuntu6) ... 3880s Reading package lists... 3881s Building dependency tree... 3881s Reading state information... 3882s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 3883s sh: Attempting to set up Debian/Ubuntu apt sources automatically 3883s sh: Distribution appears to be Ubuntu 3885s Reading package lists... 3886s Building dependency tree... 3886s Reading state information... 3887s eatmydata is already the newest version (131-1). 3887s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3887s Reading package lists... 3887s Building dependency tree... 3887s Reading state information... 3889s dbus is already the newest version (1.14.10-4ubuntu1). 3889s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3889s Reading package lists... 3890s Building dependency tree... 3890s Reading state information... 3890s rng-tools-debian is already the newest version (2.4). 3890s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3890s Reading package lists... 3891s Building dependency tree... 3891s Reading state information... 3892s The following packages will be REMOVED: 3892s cloud-init* python3-configobj* python3-debconf* 3893s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 3893s After this operation, 3256 kB disk space will be freed. 3893s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 3893s Removing cloud-init (24.1.2-0ubuntu1) ... 3895s Removing python3-configobj (5.0.8-3) ... 3895s Removing python3-debconf (1.5.86) ... 3895s Processing triggers for man-db (2.12.0-3) ... 3895s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 3895s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 3897s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 3897s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 3897s invoke-rc.d: policy-rc.d denied execution of try-restart. 3897s Reading package lists... 3898s Building dependency tree... 3898s Reading state information... 3899s linux-generic is already the newest version (6.8.0-11.11+1). 3899s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3899s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 3899s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 3900s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 3905s Reading package lists... 3905s Reading package lists... 3905s Building dependency tree... 3905s Reading state information... 3907s Calculating upgrade... 3907s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3907s Reading package lists... 3908s Building dependency tree... 3908s Reading state information... 3909s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3909s autopkgtest [18:31:43]: rebooting testbed after setup commands that affected boot 4078s Reading package lists... 4079s Building dependency tree... 4079s Reading state information... 4079s Starting pkgProblemResolver with broken count: 0 4079s Starting 2 pkgProblemResolver with broken count: 0 4079s Done 4081s The following additional packages will be installed: 4081s adwaita-icon-theme at-spi2-common ca-certificates-java default-jre 4081s default-jre-headless fontconfig fontconfig-config fonts-dejavu-core 4081s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 4081s humanity-icon-theme java-common libapache-pom-java libasound2 4081s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 4081s libavahi-common3 libbarclay-java libcairo2 libcommons-codec-java 4081s libcommons-compress-java libcommons-io-java libcommons-jexl2-java 4081s libcommons-lang3-java libcommons-logging-java libcommons-math3-java 4081s libcommons-parent-java libcups2 libdatrie1 libdeflate0 libdrm-amdgpu1 4081s libdrm-nouveau2 libdrm-radeon1 libfontconfig1 libfreemarker-java 4081s libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 4081s libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 4081s libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 4081s libgtk2.0-common libharfbuzz0b libhtsjdk-java libhttpclient-java 4081s libhttpcore-java libjbig0 libjoptsimple-java libjpeg-turbo8 libjpeg8 4081s liblcms2-2 liblerc4 liblightcouch-java libllvm17 liblog4j2-java 4081s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libmongodb-java 4081s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 4081s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpicard-java 4081s libpixman-1-0 librhino-java libsharpyuv0 libslf4j-java libsnappy-java 4081s libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 4081s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 4081s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 4081s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 4081s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 4081s openjdk-21-jre openjdk-21-jre-headless picard-tools ubuntu-mono x11-common 4081s Suggested packages: 4081s libasound2-plugins alsa-utils libasm-java libxz-java libcommons-io-java-doc 4081s libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java 4081s cups-common jython libdom4j-java libjaxen-java libjdom1-java libxalan2-java 4081s libgoogle-gson-java-doc gvfs libjoptsimple-java-doc liblcms2-utils 4081s libactivation-java libcommons-csv-java libconversant-disruptor-java 4081s libdisruptor-java libgeronimo-jms-1.1-spec-java 4081s libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjansi-java 4081s libjctools-java libjeromq-java libmail-java libwoodstox-java libngs-java-doc 4081s pcscd rhino libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic 4081s fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 4081s Recommended packages: 4081s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 4081s libgkl-jni libgl1-amber-dri libgail-common libgtk2.0-bin r-base-core 4081s mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 4081s The following NEW packages will be installed: 4081s adwaita-icon-theme at-spi2-common autopkgtest-satdep ca-certificates-java 4081s default-jre default-jre-headless fontconfig fontconfig-config 4081s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 4081s humanity-icon-theme java-common libapache-pom-java libasound2 4081s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 4081s libavahi-common3 libbarclay-java libcairo2 libcommons-codec-java 4081s libcommons-compress-java libcommons-io-java libcommons-jexl2-java 4081s libcommons-lang3-java libcommons-logging-java libcommons-math3-java 4081s libcommons-parent-java libcups2 libdatrie1 libdeflate0 libdrm-amdgpu1 4081s libdrm-nouveau2 libdrm-radeon1 libfontconfig1 libfreemarker-java 4081s libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 4081s libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 4081s libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 4081s libgtk2.0-common libharfbuzz0b libhtsjdk-java libhttpclient-java 4081s libhttpcore-java libjbig0 libjoptsimple-java libjpeg-turbo8 libjpeg8 4081s liblcms2-2 liblerc4 liblightcouch-java libllvm17 liblog4j2-java 4081s libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libmongodb-java 4081s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpango-1.0-0 4081s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpicard-java 4081s libpixman-1-0 librhino-java libsharpyuv0 libslf4j-java libsnappy-java 4081s libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 4081s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 4081s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 4081s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 4081s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 4081s openjdk-21-jre openjdk-21-jre-headless picard-tools ubuntu-mono x11-common 4081s 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded. 4081s Need to get 110 MB/110 MB of archives. 4081s After this operation, 453 MB of additional disk space will be used. 4081s Get:1 /tmp/autopkgtest.w2H4x5/7-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 4081s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 4081s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 4081s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 4081s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 4081s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 4081s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 4081s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 4081s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 4081s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 4081s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 4081s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 4081s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 4081s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 4081s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 4081s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 4082s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 4082s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 4082s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 4082s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 4082s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 4082s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 4082s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 4082s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 4082s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 4082s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 4082s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 4082s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 4082s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 4082s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 4082s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 4082s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 4082s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 4082s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 4083s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 4083s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 4083s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 4083s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 4083s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 4083s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 4083s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 4083s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 4083s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 4083s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 4083s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 4083s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 4083s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 4083s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 4083s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 4083s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 4083s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 4083s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 4083s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 4083s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 4083s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 4083s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 4083s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 4083s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 4083s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 4083s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 4083s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 4083s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 4083s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 4083s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 4083s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 4083s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 4083s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 4083s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 4083s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 4083s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 4084s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 4084s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 4084s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 4084s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 4086s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 4086s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 4087s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 4087s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 4087s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 4087s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 4087s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 4087s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 4087s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 4087s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 4087s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 4087s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang3-java all 3.14.0-1 [586 kB] 4087s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreemarker-java all 2.3.32-2 [1542 kB] 4087s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB] 4087s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjoptsimple-java all 5.0.4-4 [73.1 kB] 4087s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-codec-java all 1.16.0-1 [306 kB] 4087s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 4087s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB] 4087s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB] 4087s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB] 4087s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB] 4087s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libslf4j-java all 1.7.32-1 [141 kB] 4087s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB] 4088s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libbarclay-java all 5.0.0+dfsg-1 [108 kB] 4088s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 4088s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-io-java all 2.11.0-2 [297 kB] 4088s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 4088s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-math3-java all 3.6.1-3 [2016 kB] 4088s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libgatk-native-bindings-java all 1.0.0+dfsg-2 [8014 B] 4088s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 4088s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 4089s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 4089s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 4089s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 4089s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 4089s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 4089s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 4089s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 4089s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 4090s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 4090s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 4090s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 4090s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 4090s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libgkl-java all 0.8.11+dfsg-2 [24.8 kB] 4090s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpicard-java all 3.1.1+dfsg-1 [1731 kB] 4090s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 picard-tools all 3.1.1+dfsg-1 [308 kB] 4091s Fetched 110 MB in 10s (11.4 MB/s) 4091s Selecting previously unselected package libgdk-pixbuf2.0-common. 4092s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 4092s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 4092s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 4092s Selecting previously unselected package libjpeg-turbo8:arm64. 4092s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 4092s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 4092s Selecting previously unselected package libjpeg8:arm64. 4092s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 4092s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 4092s Selecting previously unselected package libdeflate0:arm64. 4092s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 4092s Unpacking libdeflate0:arm64 (1.19-1) ... 4092s Selecting previously unselected package libjbig0:arm64. 4092s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 4092s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 4092s Selecting previously unselected package liblerc4:arm64. 4092s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 4092s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 4092s Selecting previously unselected package libsharpyuv0:arm64. 4092s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 4092s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 4092s Selecting previously unselected package libwebp7:arm64. 4092s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 4092s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 4092s Selecting previously unselected package libtiff6:arm64. 4092s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 4092s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 4092s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 4092s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 4092s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 4092s Selecting previously unselected package gtk-update-icon-cache. 4092s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 4092s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 4092s Selecting previously unselected package hicolor-icon-theme. 4092s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 4092s Unpacking hicolor-icon-theme (0.17-2) ... 4093s Selecting previously unselected package humanity-icon-theme. 4093s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 4093s Unpacking humanity-icon-theme (0.6.16) ... 4095s Selecting previously unselected package ubuntu-mono. 4095s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 4095s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 4096s Selecting previously unselected package adwaita-icon-theme. 4096s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 4096s Unpacking adwaita-icon-theme (46~rc-1) ... 4097s Selecting previously unselected package at-spi2-common. 4097s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 4097s Unpacking at-spi2-common (2.50.0-1) ... 4097s Selecting previously unselected package ca-certificates-java. 4097s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 4097s Unpacking ca-certificates-java (20240118) ... 4097s Selecting previously unselected package java-common. 4097s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 4097s Unpacking java-common (0.75+exp1) ... 4097s Selecting previously unselected package libavahi-common-data:arm64. 4097s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 4097s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 4097s Selecting previously unselected package libavahi-common3:arm64. 4097s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 4097s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 4097s Selecting previously unselected package libavahi-client3:arm64. 4097s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 4097s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 4097s Selecting previously unselected package libcups2:arm64. 4097s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 4097s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 4097s Selecting previously unselected package liblcms2-2:arm64. 4097s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 4097s Unpacking liblcms2-2:arm64 (2.14-2) ... 4097s Selecting previously unselected package fonts-dejavu-mono. 4097s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 4097s Unpacking fonts-dejavu-mono (2.37-8) ... 4097s Selecting previously unselected package fonts-dejavu-core. 4097s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 4097s Unpacking fonts-dejavu-core (2.37-8) ... 4098s Selecting previously unselected package fontconfig-config. 4098s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 4098s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 4098s Selecting previously unselected package libfontconfig1:arm64. 4098s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 4098s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 4098s Selecting previously unselected package libasound2-data. 4098s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 4098s Unpacking libasound2-data (1.2.10-3build1) ... 4098s Selecting previously unselected package libasound2:arm64. 4098s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 4098s Unpacking libasound2:arm64 (1.2.10-3build1) ... 4098s Selecting previously unselected package libgraphite2-3:arm64. 4098s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 4098s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 4098s Selecting previously unselected package libharfbuzz0b:arm64. 4098s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 4098s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 4099s Selecting previously unselected package libpcsclite1:arm64. 4099s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 4099s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 4099s Selecting previously unselected package openjdk-21-jre-headless:arm64. 4099s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 4099s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 4102s Selecting previously unselected package default-jre-headless. 4102s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 4102s Unpacking default-jre-headless (2:1.21-75+exp1) ... 4102s Selecting previously unselected package libgtk2.0-common. 4102s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 4102s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 4102s Selecting previously unselected package libatk1.0-0:arm64. 4103s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 4103s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 4103s Selecting previously unselected package libpixman-1-0:arm64. 4103s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 4103s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 4103s Selecting previously unselected package libxcb-render0:arm64. 4103s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 4103s Unpacking libxcb-render0:arm64 (1.15-1) ... 4103s Selecting previously unselected package libxcb-shm0:arm64. 4103s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 4103s Unpacking libxcb-shm0:arm64 (1.15-1) ... 4103s Selecting previously unselected package libxrender1:arm64. 4103s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 4103s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 4103s Selecting previously unselected package libcairo2:arm64. 4103s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 4103s Unpacking libcairo2:arm64 (1.18.0-1) ... 4103s Selecting previously unselected package fontconfig. 4103s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 4103s Unpacking fontconfig (2.15.0-1ubuntu1) ... 4103s Selecting previously unselected package libthai-data. 4103s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 4103s Unpacking libthai-data (0.1.29-2) ... 4103s Selecting previously unselected package libdatrie1:arm64. 4103s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 4103s Unpacking libdatrie1:arm64 (0.2.13-3) ... 4103s Selecting previously unselected package libthai0:arm64. 4103s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 4103s Unpacking libthai0:arm64 (0.1.29-2) ... 4103s Selecting previously unselected package libpango-1.0-0:arm64. 4103s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 4103s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 4103s Selecting previously unselected package libpangoft2-1.0-0:arm64. 4103s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 4103s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 4103s Selecting previously unselected package libpangocairo-1.0-0:arm64. 4103s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 4103s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 4103s Selecting previously unselected package libxcomposite1:arm64. 4103s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 4103s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 4103s Selecting previously unselected package libxfixes3:arm64. 4103s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 4103s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 4103s Selecting previously unselected package libxcursor1:arm64. 4103s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 4103s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 4103s Selecting previously unselected package libxdamage1:arm64. 4103s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 4103s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 4103s Selecting previously unselected package libxi6:arm64. 4103s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 4103s Unpacking libxi6:arm64 (2:1.8.1-1) ... 4103s Selecting previously unselected package libxinerama1:arm64. 4103s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 4103s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 4103s Selecting previously unselected package libxrandr2:arm64. 4103s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 4103s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 4103s Selecting previously unselected package libgtk2.0-0:arm64. 4103s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 4103s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 4103s Selecting previously unselected package libglvnd0:arm64. 4103s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 4103s Unpacking libglvnd0:arm64 (1.7.0-1) ... 4103s Selecting previously unselected package libglapi-mesa:arm64. 4104s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 4104s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 4104s Selecting previously unselected package libx11-xcb1:arm64. 4104s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 4104s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 4104s Selecting previously unselected package libxcb-dri2-0:arm64. 4104s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 4104s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 4104s Selecting previously unselected package libxcb-dri3-0:arm64. 4104s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 4104s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 4104s Selecting previously unselected package libxcb-glx0:arm64. 4104s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 4104s Unpacking libxcb-glx0:arm64 (1.15-1) ... 4104s Selecting previously unselected package libxcb-present0:arm64. 4104s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 4104s Unpacking libxcb-present0:arm64 (1.15-1) ... 4104s Selecting previously unselected package libxcb-randr0:arm64. 4104s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 4104s Unpacking libxcb-randr0:arm64 (1.15-1) ... 4104s Selecting previously unselected package libxcb-sync1:arm64. 4104s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 4104s Unpacking libxcb-sync1:arm64 (1.15-1) ... 4104s Selecting previously unselected package libxcb-xfixes0:arm64. 4104s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 4104s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 4104s Selecting previously unselected package libxshmfence1:arm64. 4104s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 4104s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 4104s Selecting previously unselected package libxxf86vm1:arm64. 4104s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 4104s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 4104s Selecting previously unselected package libvulkan1:arm64. 4104s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 4104s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 4104s Selecting previously unselected package libdrm-amdgpu1:arm64. 4104s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 4104s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 4104s Selecting previously unselected package libdrm-nouveau2:arm64. 4104s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 4104s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 4104s Selecting previously unselected package libdrm-radeon1:arm64. 4104s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 4104s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 4105s Selecting previously unselected package libllvm17:arm64. 4105s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 4105s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 4106s Selecting previously unselected package libgl1-mesa-dri:arm64. 4106s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 4106s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 4107s Selecting previously unselected package libglx-mesa0:arm64. 4107s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 4107s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 4107s Selecting previously unselected package libglx0:arm64. 4107s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 4107s Unpacking libglx0:arm64 (1.7.0-1) ... 4107s Selecting previously unselected package libgl1:arm64. 4107s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 4107s Unpacking libgl1:arm64 (1.7.0-1) ... 4107s Selecting previously unselected package libgif7:arm64. 4107s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 4107s Unpacking libgif7:arm64 (5.2.1-2.5) ... 4107s Selecting previously unselected package x11-common. 4107s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 4107s Unpacking x11-common (1:7.7+23ubuntu2) ... 4107s Selecting previously unselected package libxtst6:arm64. 4107s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 4107s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 4107s Selecting previously unselected package openjdk-21-jre:arm64. 4107s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 4107s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 4107s Selecting previously unselected package default-jre. 4107s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 4107s Unpacking default-jre (2:1.21-75+exp1) ... 4107s Selecting previously unselected package libapache-pom-java. 4107s Preparing to unpack .../082-libapache-pom-java_29-2_all.deb ... 4107s Unpacking libapache-pom-java (29-2) ... 4107s Selecting previously unselected package libcommons-parent-java. 4107s Preparing to unpack .../083-libcommons-parent-java_56-1_all.deb ... 4107s Unpacking libcommons-parent-java (56-1) ... 4107s Selecting previously unselected package libcommons-lang3-java. 4107s Preparing to unpack .../084-libcommons-lang3-java_3.14.0-1_all.deb ... 4107s Unpacking libcommons-lang3-java (3.14.0-1) ... 4108s Selecting previously unselected package libfreemarker-java. 4108s Preparing to unpack .../085-libfreemarker-java_2.3.32-2_all.deb ... 4108s Unpacking libfreemarker-java (2.3.32-2) ... 4108s Selecting previously unselected package libgoogle-gson-java. 4108s Preparing to unpack .../086-libgoogle-gson-java_2.10.1-1_all.deb ... 4108s Unpacking libgoogle-gson-java (2.10.1-1) ... 4108s Selecting previously unselected package libjoptsimple-java. 4108s Preparing to unpack .../087-libjoptsimple-java_5.0.4-4_all.deb ... 4108s Unpacking libjoptsimple-java (5.0.4-4) ... 4108s Selecting previously unselected package libcommons-codec-java. 4108s Preparing to unpack .../088-libcommons-codec-java_1.16.0-1_all.deb ... 4108s Unpacking libcommons-codec-java (1.16.0-1) ... 4108s Selecting previously unselected package libcommons-logging-java. 4108s Preparing to unpack .../089-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 4108s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 4108s Selecting previously unselected package libhttpcore-java. 4108s Preparing to unpack .../090-libhttpcore-java_4.4.16-1_all.deb ... 4108s Unpacking libhttpcore-java (4.4.16-1) ... 4108s Selecting previously unselected package libhttpclient-java. 4108s Preparing to unpack .../091-libhttpclient-java_4.5.14-1_all.deb ... 4108s Unpacking libhttpclient-java (4.5.14-1) ... 4108s Selecting previously unselected package liblightcouch-java. 4108s Preparing to unpack .../092-liblightcouch-java_0.2.0-1_all.deb ... 4108s Unpacking liblightcouch-java (0.2.0-1) ... 4108s Selecting previously unselected package libmongodb-java. 4108s Preparing to unpack .../093-libmongodb-java_3.6.3-2_all.deb ... 4108s Unpacking libmongodb-java (3.6.3-2) ... 4108s Selecting previously unselected package libslf4j-java. 4108s Preparing to unpack .../094-libslf4j-java_1.7.32-1_all.deb ... 4108s Unpacking libslf4j-java (1.7.32-1) ... 4109s Selecting previously unselected package liblog4j2-java. 4109s Preparing to unpack .../095-liblog4j2-java_2.19.0-2_all.deb ... 4109s Unpacking liblog4j2-java (2.19.0-2) ... 4109s Selecting previously unselected package libbarclay-java. 4109s Preparing to unpack .../096-libbarclay-java_5.0.0+dfsg-1_all.deb ... 4109s Unpacking libbarclay-java (5.0.0+dfsg-1) ... 4109s Selecting previously unselected package libcommons-compress-java. 4109s Preparing to unpack .../097-libcommons-compress-java_1.25.0-1_all.deb ... 4109s Unpacking libcommons-compress-java (1.25.0-1) ... 4109s Selecting previously unselected package libcommons-io-java. 4109s Preparing to unpack .../098-libcommons-io-java_2.11.0-2_all.deb ... 4109s Unpacking libcommons-io-java (2.11.0-2) ... 4109s Selecting previously unselected package libcommons-jexl2-java. 4109s Preparing to unpack .../099-libcommons-jexl2-java_2.1.1-6_all.deb ... 4109s Unpacking libcommons-jexl2-java (2.1.1-6) ... 4109s Selecting previously unselected package libcommons-math3-java. 4109s Preparing to unpack .../100-libcommons-math3-java_3.6.1-3_all.deb ... 4109s Unpacking libcommons-math3-java (3.6.1-3) ... 4109s Selecting previously unselected package libgatk-native-bindings-java. 4109s Preparing to unpack .../101-libgatk-native-bindings-java_1.0.0+dfsg-2_all.deb ... 4109s Unpacking libgatk-native-bindings-java (1.0.0+dfsg-2) ... 4109s Selecting previously unselected package libmjson-java. 4109s Preparing to unpack .../102-libmjson-java_1.4.0-3_all.deb ... 4109s Unpacking libmjson-java (1.4.0-3) ... 4109s Selecting previously unselected package libmbedcrypto7:arm64. 4109s Preparing to unpack .../103-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 4109s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 4109s Selecting previously unselected package libmbedx509-1:arm64. 4109s Preparing to unpack .../104-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 4109s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 4110s Selecting previously unselected package libmbedtls14:arm64. 4110s Preparing to unpack .../105-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 4110s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 4110s Selecting previously unselected package ncbi-vdb-data. 4110s Preparing to unpack .../106-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 4110s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 4110s Selecting previously unselected package libncbi-vdb3:arm64. 4110s Preparing to unpack .../107-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 4110s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 4110s Selecting previously unselected package libncbi-ngs3:arm64. 4110s Preparing to unpack .../108-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 4110s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 4110s Selecting previously unselected package libngs-jni:arm64. 4110s Preparing to unpack .../109-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 4110s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 4110s Selecting previously unselected package libngs-java:arm64. 4110s Preparing to unpack .../110-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 4110s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 4110s Selecting previously unselected package librhino-java. 4110s Preparing to unpack .../111-librhino-java_1.7.14-2.1_all.deb ... 4110s Unpacking librhino-java (1.7.14-2.1) ... 4110s Selecting previously unselected package libsnappy1v5:arm64. 4110s Preparing to unpack .../112-libsnappy1v5_1.1.10-1_arm64.deb ... 4110s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 4110s Selecting previously unselected package libsnappy-jni. 4110s Preparing to unpack .../113-libsnappy-jni_1.1.10.5-1_arm64.deb ... 4110s Unpacking libsnappy-jni (1.1.10.5-1) ... 4110s Selecting previously unselected package libsnappy-java. 4110s Preparing to unpack .../114-libsnappy-java_1.1.10.5-1_all.deb ... 4110s Unpacking libsnappy-java (1.1.10.5-1) ... 4110s Selecting previously unselected package libhtsjdk-java. 4110s Preparing to unpack .../115-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 4110s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 4110s Selecting previously unselected package libgkl-java. 4111s Preparing to unpack .../116-libgkl-java_0.8.11+dfsg-2_all.deb ... 4111s Unpacking libgkl-java (0.8.11+dfsg-2) ... 4111s Selecting previously unselected package libpicard-java. 4111s Preparing to unpack .../117-libpicard-java_3.1.1+dfsg-1_all.deb ... 4111s Unpacking libpicard-java (3.1.1+dfsg-1) ... 4111s Selecting previously unselected package picard-tools. 4111s Preparing to unpack .../118-picard-tools_3.1.1+dfsg-1_all.deb ... 4111s Unpacking picard-tools (3.1.1+dfsg-1) ... 4111s Selecting previously unselected package autopkgtest-satdep. 4111s Preparing to unpack .../119-7-autopkgtest-satdep.deb ... 4111s Unpacking autopkgtest-satdep (0) ... 4111s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 4111s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 4111s Setting up liblcms2-2:arm64 (2.14-2) ... 4111s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 4111s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 4111s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 4111s Setting up libslf4j-java (1.7.32-1) ... 4111s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 4111s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 4111s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 4111s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 4111s Setting up hicolor-icon-theme (0.17-2) ... 4111s Setting up libxi6:arm64 (2:1.8.1-1) ... 4111s Setting up libgatk-native-bindings-java (1.0.0+dfsg-2) ... 4111s Setting up java-common (0.75+exp1) ... 4111s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 4111s Setting up libdatrie1:arm64 (0.2.13-3) ... 4111s Setting up libxcb-render0:arm64 (1.15-1) ... 4111s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 4111s Setting up libglvnd0:arm64 (1.7.0-1) ... 4111s Setting up libgoogle-gson-java (2.10.1-1) ... 4111s Setting up libmjson-java (1.4.0-3) ... 4111s Setting up libxcb-glx0:arm64 (1.15-1) ... 4111s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 4111s Setting up x11-common (1:7.7+23ubuntu2) ... 4112s Setting up libdeflate0:arm64 (1.19-1) ... 4112s Setting up libxcb-shm0:arm64 (1.15-1) ... 4112s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 4112s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 4112s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 4112s Setting up libxcb-present0:arm64 (1.15-1) ... 4112s Setting up libasound2-data (1.2.10-3build1) ... 4112s Setting up librhino-java (1.7.14-2.1) ... 4112s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 4112s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 4112s Setting up libxcb-sync1:arm64 (1.15-1) ... 4112s Setting up libapache-pom-java (29-2) ... 4112s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 4112s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 4112s Setting up fonts-dejavu-mono (2.37-8) ... 4112s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 4112s Setting up fonts-dejavu-core (2.37-8) ... 4112s Setting up libpcsclite1:arm64 (2.0.0-1) ... 4112s Setting up libmongodb-java (3.6.3-2) ... 4112s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 4112s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 4112s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 4112s Setting up libwebp7:arm64 (1.3.2-0.4) ... 4112s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 4112s Setting up libgif7:arm64 (5.2.1-2.5) ... 4112s Setting up libfreemarker-java (2.3.32-2) ... 4112s Setting up libxshmfence1:arm64 (1.3-1build4) ... 4112s Setting up at-spi2-common (2.50.0-1) ... 4112s Setting up libxcb-randr0:arm64 (1.15-1) ... 4112s Setting up libasound2:arm64 (1.2.10-3build1) ... 4112s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 4112s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 4112s Setting up libthai-data (0.1.29-2) ... 4112s Setting up libcommons-math3-java (3.6.1-3) ... 4112s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 4112s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 4112s Setting up libhttpcore-java (4.4.16-1) ... 4112s Setting up libjoptsimple-java (5.0.4-4) ... 4112s Setting up ca-certificates-java (20240118) ... 4112s No JRE found. Skipping Java certificates setup. 4112s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 4112s Setting up libsnappy-jni (1.1.10.5-1) ... 4112s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 4112s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 4112s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 4112s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 4112s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 4112s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 4113s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 4113s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 4113s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 4113s Setting up libcommons-parent-java (56-1) ... 4113s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 4113s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 4113s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 4113s Setting up libcommons-jexl2-java (2.1.1-6) ... 4113s Setting up libthai0:arm64 (0.1.29-2) ... 4113s Setting up libcommons-lang3-java (3.14.0-1) ... 4113s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 4113s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 4113s Setting up libsnappy-java (1.1.10.5-1) ... 4113s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 4113s Setting up libcommons-codec-java (1.16.0-1) ... 4113s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 4113s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 4113s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 4113s Setting up fontconfig (2.15.0-1ubuntu1) ... 4115s Regenerating fonts cache... done. 4115s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 4115s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 4115s Setting up libglx0:arm64 (1.7.0-1) ... 4115s Setting up libcommons-compress-java (1.25.0-1) ... 4115s Setting up libcommons-io-java (2.11.0-2) ... 4115s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 4115s Setting up libcairo2:arm64 (1.18.0-1) ... 4115s Setting up libgl1:arm64 (1.7.0-1) ... 4115s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 4115s Setting up libhttpclient-java (4.5.14-1) ... 4115s Setting up liblightcouch-java (0.2.0-1) ... 4115s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 4115s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 4115s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 4115s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 4115s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 4115s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 4115s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 4115s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 4115s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 4115s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 4115s Setting up liblog4j2-java (2.19.0-2) ... 4115s Setting up libbarclay-java (5.0.0+dfsg-1) ... 4115s Setting up libgkl-java (0.8.11+dfsg-2) ... 4115s Setting up libpicard-java (3.1.1+dfsg-1) ... 4115s Setting up adwaita-icon-theme (46~rc-1) ... 4115s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 4115s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 4115s Setting up humanity-icon-theme (0.6.16) ... 4115s Setting up ubuntu-mono (24.04-0ubuntu1) ... 4115s Processing triggers for man-db (2.12.0-3) ... 4117s Processing triggers for libc-bin (2.39-0ubuntu6) ... 4117s Processing triggers for ca-certificates-java (20240118) ... 4118s Adding debian:ACCVRAIZ1.pem 4118s Adding debian:AC_RAIZ_FNMT-RCM.pem 4118s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 4118s Adding debian:ANF_Secure_Server_Root_CA.pem 4118s Adding debian:Actalis_Authentication_Root_CA.pem 4118s Adding debian:AffirmTrust_Commercial.pem 4118s Adding debian:AffirmTrust_Networking.pem 4118s Adding debian:AffirmTrust_Premium.pem 4118s Adding debian:AffirmTrust_Premium_ECC.pem 4118s Adding debian:Amazon_Root_CA_1.pem 4118s Adding debian:Amazon_Root_CA_2.pem 4118s Adding debian:Amazon_Root_CA_3.pem 4118s Adding debian:Amazon_Root_CA_4.pem 4118s Adding debian:Atos_TrustedRoot_2011.pem 4118s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 4118s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 4118s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 4118s Adding debian:BJCA_Global_Root_CA1.pem 4118s Adding debian:BJCA_Global_Root_CA2.pem 4118s Adding debian:Baltimore_CyberTrust_Root.pem 4118s Adding debian:Buypass_Class_2_Root_CA.pem 4118s Adding debian:Buypass_Class_3_Root_CA.pem 4118s Adding debian:CA_Disig_Root_R2.pem 4118s Adding debian:CFCA_EV_ROOT.pem 4118s Adding debian:COMODO_Certification_Authority.pem 4118s Adding debian:COMODO_ECC_Certification_Authority.pem 4118s Adding debian:COMODO_RSA_Certification_Authority.pem 4118s Adding debian:Certainly_Root_E1.pem 4118s Adding debian:Certainly_Root_R1.pem 4118s Adding debian:Certigna.pem 4118s Adding debian:Certigna_Root_CA.pem 4118s Adding debian:Certum_EC-384_CA.pem 4118s Adding debian:Certum_Trusted_Network_CA.pem 4118s Adding debian:Certum_Trusted_Network_CA_2.pem 4118s Adding debian:Certum_Trusted_Root_CA.pem 4118s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 4118s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 4118s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 4118s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 4118s Adding debian:Comodo_AAA_Services_root.pem 4118s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 4118s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 4118s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 4118s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 4118s Adding debian:DigiCert_Assured_ID_Root_CA.pem 4118s Adding debian:DigiCert_Assured_ID_Root_G2.pem 4118s Adding debian:DigiCert_Assured_ID_Root_G3.pem 4118s Adding debian:DigiCert_Global_Root_CA.pem 4118s Adding debian:DigiCert_Global_Root_G2.pem 4118s Adding debian:DigiCert_Global_Root_G3.pem 4118s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 4118s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 4118s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 4118s Adding debian:DigiCert_Trusted_Root_G4.pem 4118s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 4118s Adding debian:Entrust_Root_Certification_Authority.pem 4118s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 4118s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 4118s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 4118s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 4118s Adding debian:GLOBALTRUST_2020.pem 4118s Adding debian:GTS_Root_R1.pem 4118s Adding debian:GTS_Root_R2.pem 4118s Adding debian:GTS_Root_R3.pem 4118s Adding debian:GTS_Root_R4.pem 4118s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 4118s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 4118s Adding debian:GlobalSign_Root_CA.pem 4118s Adding debian:GlobalSign_Root_CA_-_R3.pem 4118s Adding debian:GlobalSign_Root_CA_-_R6.pem 4118s Adding debian:GlobalSign_Root_E46.pem 4118s Adding debian:GlobalSign_Root_R46.pem 4118s Adding debian:Go_Daddy_Class_2_CA.pem 4118s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 4118s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 4118s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 4118s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 4118s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 4118s Adding debian:HiPKI_Root_CA_-_G1.pem 4119s Adding debian:Hongkong_Post_Root_CA_3.pem 4119s Adding debian:ISRG_Root_X1.pem 4119s Adding debian:ISRG_Root_X2.pem 4119s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 4119s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 4119s Adding debian:Izenpe.com.pem 4119s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 4119s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 4119s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 4119s Adding debian:NAVER_Global_Root_Certification_Authority.pem 4119s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 4119s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 4119s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 4119s Adding debian:QuoVadis_Root_CA_1_G3.pem 4119s Adding debian:QuoVadis_Root_CA_2.pem 4119s Adding debian:QuoVadis_Root_CA_2_G3.pem 4119s Adding debian:QuoVadis_Root_CA_3.pem 4119s Adding debian:QuoVadis_Root_CA_3_G3.pem 4119s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 4119s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 4119s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 4119s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 4119s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 4119s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 4119s Adding debian:SZAFIR_ROOT_CA2.pem 4119s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 4119s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 4119s Adding debian:SecureSign_RootCA11.pem 4119s Adding debian:SecureTrust_CA.pem 4119s Adding debian:Secure_Global_CA.pem 4119s Adding debian:Security_Communication_ECC_RootCA1.pem 4119s Adding debian:Security_Communication_RootCA2.pem 4119s Adding debian:Security_Communication_RootCA3.pem 4119s Adding debian:Security_Communication_Root_CA.pem 4119s Adding debian:Starfield_Class_2_CA.pem 4119s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 4119s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 4119s Adding debian:SwissSign_Gold_CA_-_G2.pem 4119s Adding debian:SwissSign_Silver_CA_-_G2.pem 4119s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 4119s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 4119s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 4119s Adding debian:TWCA_Global_Root_CA.pem 4119s Adding debian:TWCA_Root_Certification_Authority.pem 4119s Adding debian:TeliaSonera_Root_CA_v1.pem 4119s Adding debian:Telia_Root_CA_v2.pem 4119s Adding debian:TrustAsia_Global_Root_CA_G3.pem 4119s Adding debian:TrustAsia_Global_Root_CA_G4.pem 4119s Adding debian:Trustwave_Global_Certification_Authority.pem 4119s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 4119s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 4119s Adding debian:TunTrust_Root_CA.pem 4119s Adding debian:UCA_Extended_Validation_Root.pem 4119s Adding debian:UCA_Global_G2_Root.pem 4119s Adding debian:USERTrust_ECC_Certification_Authority.pem 4119s Adding debian:USERTrust_RSA_Certification_Authority.pem 4119s Adding debian:XRamp_Global_CA_Root.pem 4119s Adding debian:certSIGN_ROOT_CA.pem 4119s Adding debian:certSIGN_Root_CA_G2.pem 4119s Adding debian:e-Szigno_Root_CA_2017.pem 4119s Adding debian:ePKI_Root_Certification_Authority.pem 4119s Adding debian:emSign_ECC_Root_CA_-_C3.pem 4119s Adding debian:emSign_ECC_Root_CA_-_G3.pem 4119s Adding debian:emSign_Root_CA_-_C1.pem 4119s Adding debian:emSign_Root_CA_-_G1.pem 4119s Adding debian:vTrus_ECC_Root_CA.pem 4119s Adding debian:vTrus_Root_CA.pem 4119s done. 4119s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 4119s Setting up default-jre-headless (2:1.21-75+exp1) ... 4119s Setting up default-jre (2:1.21-75+exp1) ... 4119s Setting up picard-tools (3.1.1+dfsg-1) ... 4119s Setting up autopkgtest-satdep (0) ... 4129s (Reading database ... 89965 files and directories currently installed.) 4129s Removing autopkgtest-satdep (0) ... 4141s autopkgtest [18:35:35]: test picard-tools-run-unit-test: [----------------------- 4142s JavOpt: 4142s PicardProg: ViewSam 4142s PicardOpts: PF_STATUS=All ALIGNMENT_STATUS=All INPUT=unmapped.sam 4145s INFO 2024-03-24 18:35:39 ViewSam 4145s 4145s ********** NOTE: Picard's command line syntax is changing. 4145s ********** 4145s ********** For more information, please see: 4145s ********** 4145s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 4145s ********** 4145s ********** The command line looks like this in the new syntax: 4145s ********** 4145s ********** ViewSam -PF_STATUS All -ALIGNMENT_STATUS All -INPUT unmapped.sam 4145s ********** 4145s 4145s 4145s 18:35:39.802 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4145s 18:35:39.812 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 4145s 18:35:39.814 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4145s 18:35:39.820 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4145s 18:35:39.825 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 4145s 18:35:39.826 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4145s [Sun Mar 24 18:35:39 UTC 2024] ViewSam INPUT=unmapped.sam ALIGNMENT_STATUS=All PF_STATUS=All HEADER_ONLY=false RECORDS_ONLY=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 4145s [Sun Mar 24 18:35:39 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 3.1.1 4145s @HD VN:1.0 SO:queryname 4145s @RG ID:0 SM:Hi,Mom! PL:ILLUMINA 4145s both_reads_align_clip_adapter 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s both_reads_align_clip_adapter 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s both_reads_align_clip_marked 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 XT:i:97 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s both_reads_align_clip_marked 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 XT:i:97 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s both_reads_present_only_first_aligns 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s both_reads_present_only_first_aligns 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s neither_read_aligns_or_present 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s neither_read_aligns_or_present 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s read_2_too_many_gaps 77 * 0 0 * * 0 0 CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN )'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/& RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4145s read_2_too_many_gaps 141 * 0 0 * * 0 0 NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA &/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1 RG:Z:0 aa:Z:Hello ab:Z:ATTCGG ac:B:c,1,2,3 af:B:f,1.0,2.0,3.0 ai:B:i,1,2,3 as:B:s,1,2,3 4146s [Sun Mar 24 18:35:39 UTC 2024] picard.sam.ViewSam done. Elapsed time: 0.00 minutes. 4146s Runtime.totalMemory()=24379392 4146s JavOpt: 4146s PicardProg: CollectSequencingArtifactMetrics 4146s PicardOpts: I=test.sam O=test R=test.fasta 4149s INFO 2024-03-24 18:35:43 CollectSequencingArtifactMetrics 4149s 4149s ********** NOTE: Picard's command line syntax is changing. 4149s ********** 4149s ********** For more information, please see: 4149s ********** 4149s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 4149s ********** 4149s ********** The command line looks like this in the new syntax: 4149s ********** 4149s ********** CollectSequencingArtifactMetrics -I test.sam -O test -R test.fasta 4149s ********** 4149s 4149s 4149s 18:35:43.950 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4149s 18:35:43.959 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 4149s 18:35:43.959 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4149s 18:35:43.967 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4149s 18:35:43.968 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 4149s 18:35:43.969 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4150s [Sun Mar 24 18:35:44 UTC 2024] CollectSequencingArtifactMetrics INPUT=test.sam OUTPUT=test REFERENCE_SEQUENCE=test.fasta MINIMUM_QUALITY_SCORE=20 MINIMUM_MAPPING_QUALITY=30 MINIMUM_INSERT_SIZE=60 MAXIMUM_INSERT_SIZE=600 INCLUDE_UNPAIRED=false INCLUDE_DUPLICATES=false INCLUDE_NON_PF_READS=false TANDEM_READS=false USE_OQ=true CONTEXT_SIZE=1 ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 4150s [Sun Mar 24 18:35:44 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 3.1.1 4150s [Sun Mar 24 18:35:44 UTC 2024] picard.analysis.artifacts.CollectSequencingArtifactMetrics done. Elapsed time: 0.01 minutes. 4150s Runtime.totalMemory()=24379392 4150s All output files generated 4150s JavOpt: 4150s PicardProg: SortVcf 4150s PicardOpts: I=mini.vcf O=mini_sorted.vcf 4154s INFO 2024-03-24 18:35:48 SortVcf 4154s 4154s ********** NOTE: Picard's command line syntax is changing. 4154s ********** 4154s ********** For more information, please see: 4154s ********** 4154s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 4154s ********** 4154s ********** The command line looks like this in the new syntax: 4154s ********** 4154s ********** SortVcf -I mini.vcf -O mini_sorted.vcf 4154s ********** 4154s 4154s 4154s 18:35:48.266 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4154s 18:35:48.270 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 4154s 18:35:48.271 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4154s 18:35:48.274 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4154s 18:35:48.275 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 4154s 18:35:48.276 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4154s [Sun Mar 24 18:35:48 UTC 2024] SortVcf INPUT=[mini.vcf] OUTPUT=mini_sorted.vcf VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=true CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 4154s [Sun Mar 24 18:35:48 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 3.1.1 4154s INFO 2024-03-24 18:35:48 SortVcf Reading entries from input file 1 4156s [Sun Mar 24 18:35:50 UTC 2024] picard.vcf.SortVcf done. Elapsed time: 0.03 minutes. 4156s Runtime.totalMemory()=24379392 4156s sorted vcf generated 4156s JavOpt: 4156s PicardProg: SplitVcfs 4156s PicardOpts: I=mini.vcf SNP_OUTPUT=snp.vcf INDEL_OUTPUT=indel.vcf 4159s INFO 2024-03-24 18:35:53 SplitVcfs 4159s 4159s ********** NOTE: Picard's command line syntax is changing. 4159s ********** 4159s ********** For more information, please see: 4159s ********** 4159s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) 4159s ********** 4159s ********** The command line looks like this in the new syntax: 4159s ********** 4159s ********** SplitVcfs -I mini.vcf -SNP_OUTPUT snp.vcf -INDEL_OUTPUT indel.vcf 4159s ********** 4159s 4159s 4160s 18:35:54.016 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4160s 18:35:54.029 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 4160s 18:35:54.030 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4160s 18:35:54.038 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4160s 18:35:54.038 WARN NativeLibraryLoader - LD_LIBRARY_PATH = null 4160s 18:35:54.039 WARN NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 4160s [Sun Mar 24 18:35:54 UTC 2024] SplitVcfs INPUT=mini.vcf SNP_OUTPUT=snp.vcf INDEL_OUTPUT=indel.vcf STRICT=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=true CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false 4160s [Sun Mar 24 18:35:54 UTC 2024] Executing as ubuntu@autopkgtest on Linux 6.8.0-11-generic aarch64; OpenJDK 64-Bit Server VM 21.0.2+13-Ubuntu-2; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 3.1.1 4161s [Sun Mar 24 18:35:55 UTC 2024] picard.vcf.SplitVcfs done. Elapsed time: 0.03 minutes. 4161s Runtime.totalMemory()=24379392 4161s snp and indel vcfs generated 4162s autopkgtest [18:35:56]: test picard-tools-run-unit-test: -----------------------] 4162s autopkgtest [18:35:56]: test picard-tools-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 4162s picard-tools-run-unit-test PASS 4163s autopkgtest [18:35:57]: test pilon-run-unit-test: preparing testbed 4464s autopkgtest [18:40:58]: testbed dpkg architecture: arm64 4465s autopkgtest [18:40:59]: testbed apt version: 2.7.12 4465s autopkgtest [18:40:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 4467s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 4468s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 4468s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 4469s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 4469s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 4469s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 4469s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 4470s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 4470s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 4470s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4362 kB] 4471s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 4471s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 4471s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 4498s Fetched 9848 kB in 11s (876 kB/s) 4499s Reading package lists... 4510s Reading package lists... 4512s Building dependency tree... 4512s Reading state information... 4515s Calculating upgrade... 4517s The following packages will be REMOVED: 4517s libssl3 4517s The following NEW packages will be installed: 4517s libssl3t64 4517s The following packages have been kept back: 4517s curl 4517s The following packages will be upgraded: 4517s openssl 4518s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 4518s Need to get 2777 kB of archives. 4518s After this operation, 139 kB of additional disk space will be used. 4518s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 4518s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 4520s Fetched 2777 kB in 1s (2171 kB/s) 4521s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 4521s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 4521s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 4522s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 4522s wget depends on libssl3 (>= 3.0.0). 4522s u-boot-tools depends on libssl3 (>= 3.0.0). 4522s tnftp depends on libssl3 (>= 3.0.0). 4522s tcpdump depends on libssl3 (>= 3.0.0). 4522s systemd-resolved depends on libssl3 (>= 3.0.0). 4522s systemd depends on libssl3 (>= 3.0.0). 4522s sudo depends on libssl3 (>= 3.0.0). 4522s sbsigntool depends on libssl3 (>= 3.0.0). 4522s rsync depends on libssl3 (>= 3.0.0). 4522s python3-cryptography depends on libssl3 (>= 3.0.0). 4522s openssh-server depends on libssl3 (>= 3.0.10). 4522s openssh-client depends on libssl3 (>= 3.0.10). 4522s mtd-utils depends on libssl3 (>= 3.0.0). 4522s mokutil depends on libssl3 (>= 3.0.0). 4522s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 4522s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 4522s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 4522s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 4522s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 4522s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 4522s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 4522s libnvme1 depends on libssl3 (>= 3.0.0). 4522s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 4522s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 4522s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 4522s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 4522s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 4522s kmod depends on libssl3 (>= 3.0.0). 4522s dhcpcd-base depends on libssl3 (>= 3.0.0). 4522s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 4522s 4523s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 4523s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 4523s Selecting previously unselected package libssl3t64:arm64. 4524s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 4524s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 4524s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 4524s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 4524s Setting up openssl (3.0.13-0ubuntu2) ... 4524s Processing triggers for man-db (2.12.0-3) ... 4528s Processing triggers for libc-bin (2.39-0ubuntu6) ... 4531s Reading package lists... 4532s Building dependency tree... 4532s Reading state information... 4535s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 4538s sh: Attempting to set up Debian/Ubuntu apt sources automatically 4538s sh: Distribution appears to be Ubuntu 4542s Reading package lists... 4543s Building dependency tree... 4543s Reading state information... 4546s eatmydata is already the newest version (131-1). 4546s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4546s Reading package lists... 4547s Building dependency tree... 4547s Reading state information... 4549s dbus is already the newest version (1.14.10-4ubuntu1). 4549s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4549s Reading package lists... 4550s Building dependency tree... 4550s Reading state information... 4553s rng-tools-debian is already the newest version (2.4). 4553s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4554s Reading package lists... 4555s Building dependency tree... 4555s Reading state information... 4557s The following packages will be REMOVED: 4557s cloud-init* python3-configobj* python3-debconf* 4558s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 4558s After this operation, 3256 kB disk space will be freed. 4559s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 4559s Removing cloud-init (24.1.2-0ubuntu1) ... 4562s Removing python3-configobj (5.0.8-3) ... 4563s Removing python3-debconf (1.5.86) ... 4563s Processing triggers for man-db (2.12.0-3) ... 4565s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 4565s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 4570s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 4570s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 4570s invoke-rc.d: policy-rc.d denied execution of try-restart. 4571s Reading package lists... 4572s Building dependency tree... 4572s Reading state information... 4575s linux-generic is already the newest version (6.8.0-11.11+1). 4575s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4576s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 4576s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 4576s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 4592s Reading package lists... 4593s Reading package lists... 4594s Building dependency tree... 4594s Reading state information... 4597s Calculating upgrade... 4598s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4598s Reading package lists... 4599s Building dependency tree... 4599s Reading state information... 4602s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4602s autopkgtest [18:43:16]: rebooting testbed after setup commands that affected boot 4778s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 4826s Reading package lists... 4826s Building dependency tree... 4826s Reading state information... 4828s Starting pkgProblemResolver with broken count: 0 4829s Starting 2 pkgProblemResolver with broken count: 0 4829s Done 4831s The following additional packages will be installed: 4831s adwaita-icon-theme at-spi2-common ca-certificates-java default-jre 4831s default-jre-headless fontconfig fontconfig-config fonts-dejavu-core 4831s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 4831s humanity-icon-theme java-common java-wrappers libapache-pom-java libasound2 4831s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 4831s libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java 4831s libcommons-lang-java libcommons-logging-java libcommons-parent-java libcups2 4831s libdatrie1 libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 4831s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 4831s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 4831s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 4831s libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 4831s libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 4831s libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 4831s libpcsclite1 libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java 4831s libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 4831s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 4831s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 4831s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 4831s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 4831s openjdk-21-jre openjdk-21-jre-headless pilon scala-library ubuntu-mono unzip 4831s x11-common 4831s Suggested packages: 4831s libasound2-plugins alsa-utils libasm-java libxz-java 4831s libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java 4831s liblog4j1.2-java cups-common gvfs picard-tools liblcms2-utils 4831s libngs-java-doc pcscd rhino libnss-mdns fonts-dejavu-extra 4831s fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei 4831s | fonts-wqy-zenhei fonts-indic zip 4831s Recommended packages: 4831s librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin 4831s libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers 4831s | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 4832s The following NEW packages will be installed: 4832s adwaita-icon-theme at-spi2-common autopkgtest-satdep ca-certificates-java 4832s default-jre default-jre-headless fontconfig fontconfig-config 4832s fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 4832s humanity-icon-theme java-common java-wrappers libapache-pom-java libasound2 4832s libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data 4832s libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java 4832s libcommons-lang-java libcommons-logging-java libcommons-parent-java libcups2 4832s libdatrie1 libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 4832s libfontconfig1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 4832s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 4832s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 4832s libjpeg-turbo8 libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 4832s libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 4832s libngs-java libngs-jni libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 4832s libpcsclite1 libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java 4832s libsnappy-jni libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 4832s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 4832s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 4832s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 4832s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data 4832s openjdk-21-jre openjdk-21-jre-headless pilon scala-library ubuntu-mono unzip 4832s x11-common 4832s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. 4832s Need to get 107 MB/107 MB of archives. 4832s After this operation, 446 MB of additional disk space will be used. 4832s Get:1 /tmp/autopkgtest.w2H4x5/8-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [700 B] 4833s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 4833s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 4833s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 4833s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 4834s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 4834s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 4834s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 4834s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 4834s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 4834s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 4834s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 4834s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 4834s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 4834s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 4834s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 4834s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 4834s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 4834s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 4834s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 4834s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 4834s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 4834s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 4834s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 4834s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 4834s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 4834s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 4834s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 4834s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 4834s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 4834s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 4834s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 4834s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 4834s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 4839s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 4839s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 4839s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 4839s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 4839s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 4839s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 4839s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 4839s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 4839s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 4839s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 4839s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 4839s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 4839s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 4839s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 4839s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 4839s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 4839s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 4839s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 4839s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 4839s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 4839s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 4839s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 4839s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 4840s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 4840s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 4840s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 4840s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 4840s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 4840s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 4840s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 4840s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 4840s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 4840s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 4840s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 4840s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 4840s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 4840s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 4840s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 4840s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 4840s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 4844s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 4844s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 4844s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 4844s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 4844s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 4844s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 4844s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 4844s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 4844s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 4844s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 4844s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 java-wrappers all 0.4 [8662 B] 4844s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 4844s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 4844s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 4844s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 4844s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 4844s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-lang-java all 2.6-10 [270 kB] 4844s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB] 4844s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 4844s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 4844s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 4844s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB] 4844s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB] 4845s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB] 4845s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B] 4845s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB] 4845s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB] 4845s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 4845s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B] 4845s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB] 4846s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB] 4846s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 scala-library all 2.11.12-5 [9586 kB] 4847s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 pilon all 1.24-3 [495 kB] 4852s Fetched 107 MB in 15s (6951 kB/s) 4852s Selecting previously unselected package libgdk-pixbuf2.0-common. 4853s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 4853s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 4853s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 4853s Selecting previously unselected package libjpeg-turbo8:arm64. 4853s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 4853s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 4853s Selecting previously unselected package libjpeg8:arm64. 4853s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 4853s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 4853s Selecting previously unselected package libdeflate0:arm64. 4853s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ... 4853s Unpacking libdeflate0:arm64 (1.19-1) ... 4853s Selecting previously unselected package libjbig0:arm64. 4853s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 4853s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 4853s Selecting previously unselected package liblerc4:arm64. 4854s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 4854s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 4854s Selecting previously unselected package libsharpyuv0:arm64. 4854s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ... 4854s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 4854s Selecting previously unselected package libwebp7:arm64. 4854s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ... 4854s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 4854s Selecting previously unselected package libtiff6:arm64. 4854s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 4854s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 4854s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 4854s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 4854s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 4854s Selecting previously unselected package gtk-update-icon-cache. 4854s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 4854s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 4855s Selecting previously unselected package hicolor-icon-theme. 4855s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ... 4855s Unpacking hicolor-icon-theme (0.17-2) ... 4855s Selecting previously unselected package humanity-icon-theme. 4855s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ... 4856s Unpacking humanity-icon-theme (0.6.16) ... 4868s Selecting previously unselected package ubuntu-mono. 4868s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ... 4868s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 4873s Selecting previously unselected package adwaita-icon-theme. 4873s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ... 4873s Unpacking adwaita-icon-theme (46~rc-1) ... 4876s Selecting previously unselected package at-spi2-common. 4876s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ... 4876s Unpacking at-spi2-common (2.50.0-1) ... 4876s Selecting previously unselected package ca-certificates-java. 4876s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ... 4876s Unpacking ca-certificates-java (20240118) ... 4876s Selecting previously unselected package java-common. 4877s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ... 4877s Unpacking java-common (0.75+exp1) ... 4877s Selecting previously unselected package libavahi-common-data:arm64. 4877s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 4877s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 4877s Selecting previously unselected package libavahi-common3:arm64. 4877s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 4877s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 4877s Selecting previously unselected package libavahi-client3:arm64. 4877s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 4877s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 4878s Selecting previously unselected package libcups2:arm64. 4878s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ... 4878s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 4878s Selecting previously unselected package liblcms2-2:arm64. 4878s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ... 4878s Unpacking liblcms2-2:arm64 (2.14-2) ... 4878s Selecting previously unselected package fonts-dejavu-mono. 4878s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ... 4878s Unpacking fonts-dejavu-mono (2.37-8) ... 4879s Selecting previously unselected package fonts-dejavu-core. 4879s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ... 4879s Unpacking fonts-dejavu-core (2.37-8) ... 4879s Selecting previously unselected package fontconfig-config. 4880s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 4881s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 4882s Selecting previously unselected package libfontconfig1:arm64. 4882s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 4882s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 4882s Selecting previously unselected package libasound2-data. 4882s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ... 4882s Unpacking libasound2-data (1.2.10-3build1) ... 4882s Selecting previously unselected package libasound2:arm64. 4882s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ... 4882s Unpacking libasound2:arm64 (1.2.10-3build1) ... 4883s Selecting previously unselected package libgraphite2-3:arm64. 4883s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ... 4883s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 4883s Selecting previously unselected package libharfbuzz0b:arm64. 4883s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ... 4883s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 4883s Selecting previously unselected package libpcsclite1:arm64. 4883s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ... 4883s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 4884s Selecting previously unselected package openjdk-21-jre-headless:arm64. 4884s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 4884s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 4904s Selecting previously unselected package default-jre-headless. 4905s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 4905s Unpacking default-jre-headless (2:1.21-75+exp1) ... 4905s Selecting previously unselected package libgtk2.0-common. 4905s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 4905s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 4905s Selecting previously unselected package libatk1.0-0:arm64. 4905s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ... 4905s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 4905s Selecting previously unselected package libpixman-1-0:arm64. 4906s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ... 4906s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 4906s Selecting previously unselected package libxcb-render0:arm64. 4906s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ... 4906s Unpacking libxcb-render0:arm64 (1.15-1) ... 4906s Selecting previously unselected package libxcb-shm0:arm64. 4906s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ... 4906s Unpacking libxcb-shm0:arm64 (1.15-1) ... 4907s Selecting previously unselected package libxrender1:arm64. 4907s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 4907s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 4907s Selecting previously unselected package libcairo2:arm64. 4907s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ... 4907s Unpacking libcairo2:arm64 (1.18.0-1) ... 4907s Selecting previously unselected package fontconfig. 4907s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 4907s Unpacking fontconfig (2.15.0-1ubuntu1) ... 4908s Selecting previously unselected package libthai-data. 4908s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ... 4908s Unpacking libthai-data (0.1.29-2) ... 4908s Selecting previously unselected package libdatrie1:arm64. 4908s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ... 4908s Unpacking libdatrie1:arm64 (0.2.13-3) ... 4908s Selecting previously unselected package libthai0:arm64. 4908s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ... 4908s Unpacking libthai0:arm64 (0.1.29-2) ... 4908s Selecting previously unselected package libpango-1.0-0:arm64. 4908s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 4908s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 4908s Selecting previously unselected package libpangoft2-1.0-0:arm64. 4908s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 4908s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 4909s Selecting previously unselected package libpangocairo-1.0-0:arm64. 4909s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 4909s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 4909s Selecting previously unselected package libxcomposite1:arm64. 4909s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 4909s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 4909s Selecting previously unselected package libxfixes3:arm64. 4909s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ... 4909s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 4909s Selecting previously unselected package libxcursor1:arm64. 4909s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ... 4909s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 4909s Selecting previously unselected package libxdamage1:arm64. 4909s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ... 4910s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 4910s Selecting previously unselected package libxi6:arm64. 4910s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ... 4910s Unpacking libxi6:arm64 (2:1.8.1-1) ... 4910s Selecting previously unselected package libxinerama1:arm64. 4910s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ... 4910s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 4910s Selecting previously unselected package libxrandr2:arm64. 4910s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ... 4910s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 4910s Selecting previously unselected package libgtk2.0-0:arm64. 4910s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 4911s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 4911s Selecting previously unselected package libglvnd0:arm64. 4911s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ... 4911s Unpacking libglvnd0:arm64 (1.7.0-1) ... 4911s Selecting previously unselected package libglapi-mesa:arm64. 4911s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 4911s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 4912s Selecting previously unselected package libx11-xcb1:arm64. 4912s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 4912s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 4912s Selecting previously unselected package libxcb-dri2-0:arm64. 4912s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ... 4912s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 4912s Selecting previously unselected package libxcb-dri3-0:arm64. 4912s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ... 4912s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 4912s Selecting previously unselected package libxcb-glx0:arm64. 4912s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ... 4912s Unpacking libxcb-glx0:arm64 (1.15-1) ... 4912s Selecting previously unselected package libxcb-present0:arm64. 4912s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ... 4912s Unpacking libxcb-present0:arm64 (1.15-1) ... 4912s Selecting previously unselected package libxcb-randr0:arm64. 4912s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ... 4912s Unpacking libxcb-randr0:arm64 (1.15-1) ... 4913s Selecting previously unselected package libxcb-sync1:arm64. 4913s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ... 4913s Unpacking libxcb-sync1:arm64 (1.15-1) ... 4913s Selecting previously unselected package libxcb-xfixes0:arm64. 4913s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ... 4913s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 4913s Selecting previously unselected package libxshmfence1:arm64. 4913s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ... 4914s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 4914s Selecting previously unselected package libxxf86vm1:arm64. 4914s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 4914s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 4914s Selecting previously unselected package libvulkan1:arm64. 4914s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ... 4914s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 4914s Selecting previously unselected package libdrm-amdgpu1:arm64. 4914s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 4914s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 4915s Selecting previously unselected package libdrm-nouveau2:arm64. 4915s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ... 4915s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 4915s Selecting previously unselected package libdrm-radeon1:arm64. 4915s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ... 4915s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 4915s Selecting previously unselected package libllvm17:arm64. 4915s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 4915s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 4927s Selecting previously unselected package libgl1-mesa-dri:arm64. 4927s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 4927s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 4932s Selecting previously unselected package libglx-mesa0:arm64. 4933s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 4933s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 4933s Selecting previously unselected package libglx0:arm64. 4933s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ... 4933s Unpacking libglx0:arm64 (1.7.0-1) ... 4933s Selecting previously unselected package libgl1:arm64. 4933s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ... 4933s Unpacking libgl1:arm64 (1.7.0-1) ... 4933s Selecting previously unselected package libgif7:arm64. 4933s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ... 4933s Unpacking libgif7:arm64 (5.2.1-2.5) ... 4933s Selecting previously unselected package x11-common. 4933s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 4933s Unpacking x11-common (1:7.7+23ubuntu2) ... 4933s Selecting previously unselected package libxtst6:arm64. 4933s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ... 4933s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ... 4933s Selecting previously unselected package openjdk-21-jre:arm64. 4935s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 4935s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 4935s Selecting previously unselected package default-jre. 4935s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ... 4935s Unpacking default-jre (2:1.21-75+exp1) ... 4935s Selecting previously unselected package unzip. 4935s Preparing to unpack .../082-unzip_6.0-28ubuntu3_arm64.deb ... 4935s Unpacking unzip (6.0-28ubuntu3) ... 4935s Selecting previously unselected package java-wrappers. 4935s Preparing to unpack .../083-java-wrappers_0.4_all.deb ... 4935s Unpacking java-wrappers (0.4) ... 4935s Selecting previously unselected package libapache-pom-java. 4935s Preparing to unpack .../084-libapache-pom-java_29-2_all.deb ... 4935s Unpacking libapache-pom-java (29-2) ... 4935s Selecting previously unselected package libcommons-parent-java. 4935s Preparing to unpack .../085-libcommons-parent-java_56-1_all.deb ... 4935s Unpacking libcommons-parent-java (56-1) ... 4935s Selecting previously unselected package libcommons-compress-java. 4935s Preparing to unpack .../086-libcommons-compress-java_1.25.0-1_all.deb ... 4935s Unpacking libcommons-compress-java (1.25.0-1) ... 4935s Selecting previously unselected package libcommons-logging-java. 4935s Preparing to unpack .../087-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 4935s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 4935s Selecting previously unselected package libcommons-jexl2-java. 4935s Preparing to unpack .../088-libcommons-jexl2-java_2.1.1-6_all.deb ... 4935s Unpacking libcommons-jexl2-java (2.1.1-6) ... 4935s Selecting previously unselected package libcommons-lang-java. 4935s Preparing to unpack .../089-libcommons-lang-java_2.6-10_all.deb ... 4935s Unpacking libcommons-lang-java (2.6-10) ... 4936s Selecting previously unselected package libmjson-java. 4936s Preparing to unpack .../090-libmjson-java_1.4.0-3_all.deb ... 4936s Unpacking libmjson-java (1.4.0-3) ... 4936s Selecting previously unselected package libmbedcrypto7:arm64. 4936s Preparing to unpack .../091-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 4936s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 4936s Selecting previously unselected package libmbedx509-1:arm64. 4936s Preparing to unpack .../092-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 4936s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 4936s Selecting previously unselected package libmbedtls14:arm64. 4936s Preparing to unpack .../093-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 4936s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 4936s Selecting previously unselected package ncbi-vdb-data. 4936s Preparing to unpack .../094-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... 4936s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... 4937s Selecting previously unselected package libncbi-vdb3:arm64. 4937s Preparing to unpack .../095-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ... 4937s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 4937s Selecting previously unselected package libncbi-ngs3:arm64. 4937s Preparing to unpack .../096-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ... 4937s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 4937s Selecting previously unselected package libngs-jni:arm64. 4938s Preparing to unpack .../097-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ... 4938s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 4938s Selecting previously unselected package libngs-java:arm64. 4938s Preparing to unpack .../098-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ... 4938s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 4938s Selecting previously unselected package librhino-java. 4938s Preparing to unpack .../099-librhino-java_1.7.14-2.1_all.deb ... 4938s Unpacking librhino-java (1.7.14-2.1) ... 4938s Selecting previously unselected package libsnappy1v5:arm64. 4938s Preparing to unpack .../100-libsnappy1v5_1.1.10-1_arm64.deb ... 4938s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 4938s Selecting previously unselected package libsnappy-jni. 4939s Preparing to unpack .../101-libsnappy-jni_1.1.10.5-1_arm64.deb ... 4939s Unpacking libsnappy-jni (1.1.10.5-1) ... 4939s Selecting previously unselected package libsnappy-java. 4939s Preparing to unpack .../102-libsnappy-java_1.1.10.5-1_all.deb ... 4939s Unpacking libsnappy-java (1.1.10.5-1) ... 4939s Selecting previously unselected package libhtsjdk-java. 4939s Preparing to unpack .../103-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... 4939s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 4939s Selecting previously unselected package scala-library. 4939s Preparing to unpack .../104-scala-library_2.11.12-5_all.deb ... 4939s Unpacking scala-library (2.11.12-5) ... 4943s Selecting previously unselected package pilon. 4943s Preparing to unpack .../105-pilon_1.24-3_all.deb ... 4943s Unpacking pilon (1.24-3) ... 4943s Selecting previously unselected package autopkgtest-satdep. 4943s Preparing to unpack .../106-8-autopkgtest-satdep.deb ... 4943s Unpacking autopkgtest-satdep (0) ... 4944s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 4944s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 4944s Setting up liblcms2-2:arm64 (2.14-2) ... 4944s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 4944s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 4944s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 4944s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 4944s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 4944s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 4944s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 4944s Setting up hicolor-icon-theme (0.17-2) ... 4944s Setting up libxi6:arm64 (2:1.8.1-1) ... 4944s Setting up java-common (0.75+exp1) ... 4944s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 4944s Setting up libdatrie1:arm64 (0.2.13-3) ... 4944s Setting up libxcb-render0:arm64 (1.15-1) ... 4944s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 4944s Setting up libglvnd0:arm64 (1.7.0-1) ... 4944s Setting up libmjson-java (1.4.0-3) ... 4944s Setting up libxcb-glx0:arm64 (1.15-1) ... 4944s Setting up unzip (6.0-28ubuntu3) ... 4944s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 4944s Setting up x11-common (1:7.7+23ubuntu2) ... 4947s Setting up libdeflate0:arm64 (1.19-1) ... 4947s Setting up scala-library (2.11.12-5) ... 4947s Setting up libxcb-shm0:arm64 (1.15-1) ... 4947s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 4947s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 4947s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 4947s Setting up libxcb-present0:arm64 (1.15-1) ... 4947s Setting up libasound2-data (1.2.10-3build1) ... 4947s Setting up librhino-java (1.7.14-2.1) ... 4947s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 4947s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 4947s Setting up libxcb-sync1:arm64 (1.15-1) ... 4947s Setting up libapache-pom-java (29-2) ... 4947s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 4947s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 4947s Setting up fonts-dejavu-mono (2.37-8) ... 4947s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 4947s Setting up fonts-dejavu-core (2.37-8) ... 4947s Setting up libpcsclite1:arm64 (2.0.0-1) ... 4947s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 4947s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 4947s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 4947s Setting up libwebp7:arm64 (1.3.2-0.4) ... 4947s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 4947s Setting up libgif7:arm64 (5.2.1-2.5) ... 4947s Setting up libxshmfence1:arm64 (1.3-1build4) ... 4947s Setting up at-spi2-common (2.50.0-1) ... 4947s Setting up libxcb-randr0:arm64 (1.15-1) ... 4947s Setting up libasound2:arm64 (1.2.10-3build1) ... 4947s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 4947s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 4947s Setting up libthai-data (0.1.29-2) ... 4947s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 4947s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 4947s Setting up ca-certificates-java (20240118) ... 4947s No JRE found. Skipping Java certificates setup. 4947s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 4947s Setting up libsnappy-jni (1.1.10.5-1) ... 4947s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ... 4947s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 4947s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 4947s Setting up java-wrappers (0.4) ... 4947s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 4947s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 4947s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 4948s Setting up libxtst6:arm64 (2:1.2.3-1.1) ... 4948s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 4948s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 4948s Setting up libcommons-parent-java (56-1) ... 4948s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 4948s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... 4948s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 4948s Setting up libcommons-lang-java (2.6-10) ... 4948s Setting up libcommons-jexl2-java (2.1.1-6) ... 4948s Setting up libthai0:arm64 (0.1.29-2) ... 4948s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 4948s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 4949s Setting up libsnappy-java (1.1.10.5-1) ... 4949s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 4949s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 4949s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ... 4949s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 4949s Setting up fontconfig (2.15.0-1ubuntu1) ... 4951s Regenerating fonts cache... done. 4951s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ... 4951s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 4951s Setting up libglx0:arm64 (1.7.0-1) ... 4951s Setting up libcommons-compress-java (1.25.0-1) ... 4951s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 4951s Setting up libcairo2:arm64 (1.18.0-1) ... 4951s Setting up libgl1:arm64 (1.7.0-1) ... 4951s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 4951s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ... 4951s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 4951s Setting up libhtsjdk-java (4.1.0+dfsg-1) ... 4951s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 4951s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 4951s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 4951s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 4951s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 4951s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 4951s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 4951s Setting up adwaita-icon-theme (46~rc-1) ... 4951s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 4951s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 4951s Setting up humanity-icon-theme (0.6.16) ... 4952s Setting up ubuntu-mono (24.04-0ubuntu1) ... 4952s Processing triggers for man-db (2.12.0-3) ... 4958s Processing triggers for libc-bin (2.39-0ubuntu6) ... 4958s Processing triggers for ca-certificates-java (20240118) ... 4960s Adding debian:ACCVRAIZ1.pem 4960s Adding debian:AC_RAIZ_FNMT-RCM.pem 4960s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 4960s Adding debian:ANF_Secure_Server_Root_CA.pem 4961s Adding debian:Actalis_Authentication_Root_CA.pem 4961s Adding debian:AffirmTrust_Commercial.pem 4961s Adding debian:AffirmTrust_Networking.pem 4961s Adding debian:AffirmTrust_Premium.pem 4961s Adding debian:AffirmTrust_Premium_ECC.pem 4961s Adding debian:Amazon_Root_CA_1.pem 4961s Adding debian:Amazon_Root_CA_2.pem 4961s Adding debian:Amazon_Root_CA_3.pem 4961s Adding debian:Amazon_Root_CA_4.pem 4961s Adding debian:Atos_TrustedRoot_2011.pem 4961s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 4961s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 4961s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 4961s Adding debian:BJCA_Global_Root_CA1.pem 4961s Adding debian:BJCA_Global_Root_CA2.pem 4961s Adding debian:Baltimore_CyberTrust_Root.pem 4961s Adding debian:Buypass_Class_2_Root_CA.pem 4961s Adding debian:Buypass_Class_3_Root_CA.pem 4961s Adding debian:CA_Disig_Root_R2.pem 4961s Adding debian:CFCA_EV_ROOT.pem 4961s Adding debian:COMODO_Certification_Authority.pem 4961s Adding debian:COMODO_ECC_Certification_Authority.pem 4961s Adding debian:COMODO_RSA_Certification_Authority.pem 4961s Adding debian:Certainly_Root_E1.pem 4961s Adding debian:Certainly_Root_R1.pem 4961s Adding debian:Certigna.pem 4961s Adding debian:Certigna_Root_CA.pem 4961s Adding debian:Certum_EC-384_CA.pem 4961s Adding debian:Certum_Trusted_Network_CA.pem 4961s Adding debian:Certum_Trusted_Network_CA_2.pem 4961s Adding debian:Certum_Trusted_Root_CA.pem 4961s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 4961s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 4961s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 4961s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 4961s Adding debian:Comodo_AAA_Services_root.pem 4961s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 4961s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 4961s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 4961s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 4961s Adding debian:DigiCert_Assured_ID_Root_CA.pem 4961s Adding debian:DigiCert_Assured_ID_Root_G2.pem 4961s Adding debian:DigiCert_Assured_ID_Root_G3.pem 4961s Adding debian:DigiCert_Global_Root_CA.pem 4961s Adding debian:DigiCert_Global_Root_G2.pem 4961s Adding debian:DigiCert_Global_Root_G3.pem 4961s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 4961s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 4961s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 4961s Adding debian:DigiCert_Trusted_Root_G4.pem 4961s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 4961s Adding debian:Entrust_Root_Certification_Authority.pem 4961s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 4961s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 4961s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 4961s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 4961s Adding debian:GLOBALTRUST_2020.pem 4961s Adding debian:GTS_Root_R1.pem 4961s Adding debian:GTS_Root_R2.pem 4962s Adding debian:GTS_Root_R3.pem 4962s Adding debian:GTS_Root_R4.pem 4962s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 4962s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 4962s Adding debian:GlobalSign_Root_CA.pem 4962s Adding debian:GlobalSign_Root_CA_-_R3.pem 4962s Adding debian:GlobalSign_Root_CA_-_R6.pem 4962s Adding debian:GlobalSign_Root_E46.pem 4962s Adding debian:GlobalSign_Root_R46.pem 4962s Adding debian:Go_Daddy_Class_2_CA.pem 4962s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 4962s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 4962s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 4962s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 4962s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 4962s Adding debian:HiPKI_Root_CA_-_G1.pem 4962s Adding debian:Hongkong_Post_Root_CA_3.pem 4962s Adding debian:ISRG_Root_X1.pem 4962s Adding debian:ISRG_Root_X2.pem 4962s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 4962s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 4962s Adding debian:Izenpe.com.pem 4962s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 4962s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 4962s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 4962s Adding debian:NAVER_Global_Root_Certification_Authority.pem 4962s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 4962s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 4962s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 4962s Adding debian:QuoVadis_Root_CA_1_G3.pem 4963s Adding debian:QuoVadis_Root_CA_2.pem 4963s Adding debian:QuoVadis_Root_CA_2_G3.pem 4963s Adding debian:QuoVadis_Root_CA_3.pem 4963s Adding debian:QuoVadis_Root_CA_3_G3.pem 4963s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 4963s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 4963s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 4963s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 4963s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 4963s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 4963s Adding debian:SZAFIR_ROOT_CA2.pem 4963s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 4963s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 4963s Adding debian:SecureSign_RootCA11.pem 4963s Adding debian:SecureTrust_CA.pem 4963s Adding debian:Secure_Global_CA.pem 4963s Adding debian:Security_Communication_ECC_RootCA1.pem 4963s Adding debian:Security_Communication_RootCA2.pem 4963s Adding debian:Security_Communication_RootCA3.pem 4963s Adding debian:Security_Communication_Root_CA.pem 4963s Adding debian:Starfield_Class_2_CA.pem 4963s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 4963s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 4963s Adding debian:SwissSign_Gold_CA_-_G2.pem 4963s Adding debian:SwissSign_Silver_CA_-_G2.pem 4963s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 4963s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 4963s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 4963s Adding debian:TWCA_Global_Root_CA.pem 4963s Adding debian:TWCA_Root_Certification_Authority.pem 4963s Adding debian:TeliaSonera_Root_CA_v1.pem 4963s Adding debian:Telia_Root_CA_v2.pem 4963s Adding debian:TrustAsia_Global_Root_CA_G3.pem 4963s Adding debian:TrustAsia_Global_Root_CA_G4.pem 4963s Adding debian:Trustwave_Global_Certification_Authority.pem 4963s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 4963s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 4963s Adding debian:TunTrust_Root_CA.pem 4963s Adding debian:UCA_Extended_Validation_Root.pem 4963s Adding debian:UCA_Global_G2_Root.pem 4963s Adding debian:USERTrust_ECC_Certification_Authority.pem 4963s Adding debian:USERTrust_RSA_Certification_Authority.pem 4963s Adding debian:XRamp_Global_CA_Root.pem 4963s Adding debian:certSIGN_ROOT_CA.pem 4963s Adding debian:certSIGN_Root_CA_G2.pem 4963s Adding debian:e-Szigno_Root_CA_2017.pem 4963s Adding debian:ePKI_Root_Certification_Authority.pem 4963s Adding debian:emSign_ECC_Root_CA_-_C3.pem 4963s Adding debian:emSign_ECC_Root_CA_-_G3.pem 4963s Adding debian:emSign_Root_CA_-_C1.pem 4963s Adding debian:emSign_Root_CA_-_G1.pem 4963s Adding debian:vTrus_ECC_Root_CA.pem 4963s Adding debian:vTrus_Root_CA.pem 4964s done. 4964s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 4964s Setting up default-jre-headless (2:1.21-75+exp1) ... 4964s Setting up default-jre (2:1.21-75+exp1) ... 4964s Setting up pilon (1.24-3) ... 4964s Setting up autopkgtest-satdep (0) ... 4990s (Reading database ... 89544 files and directories currently installed.) 4990s Removing autopkgtest-satdep (0) ... 5016s autopkgtest [18:50:10]: test pilon-run-unit-test: [----------------------- 5021s Pilon version [COMMIT] [DATE] 5022s Genome: NC_045512.2.fasta 5023s Fixing snps, indels, gaps, local 5023s Input genome size: 29903 5023s Scanning BAMs 5024s SRR11728627.sorted.bam: 1250 reads, 0 filtered, 1009 mapped, 0 proper, 0 stray, Unpaired 100% 124+/-36, max 231 unpaired 5024s Processing NC_045512.2:1-29903 5027s unpaired SRR11728627.sorted.bam: coverage 4 5027s Total Reads: 1009, Coverage: 4, minDepth: 5 5034s Confirmed 4501 of 29903 bases (15.05%) 5034s Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 1 small deletions totaling 1 bases 5034s Large collapsed region: NC_045512.2:7701-17739 size 10039 5034s # Attempting to fix local continuity breaks 5035s # fix break: NC_045512.2:5582-8928 0 -0 +0 NoSolution 5036s # fix break: NC_045512.2:9224-10520 0 -0 +0 NoSolution 5038s # fix break: NC_045512.2:10739-28099 0 -0 +0 NoSolution 5038s NC_045512.2:1-29903 log: 5038s Finished processing NC_045512.2:1-29903 5038s Writing updated NC_045512.2_pilon to pilon.fasta 5039s Mean unpaired coverage: 4 5039s Mean total coverage: 4 5040s autopkgtest [18:50:34]: test pilon-run-unit-test: -----------------------] 5041s pilon-run-unit-test PASS 5041s autopkgtest [18:50:35]: test pilon-run-unit-test: - - - - - - - - - - results - - - - - - - - - - 5042s autopkgtest [18:50:36]: @@@@@@@@@@@@@@@@@@@@ summary 5042s beagle-run-sample-analysis PASS 5042s chromhmm-run-sample-analysis PASS 5042s drop-seq-run-unit-test PASS 5042s fastqc-run-unit-test PASS 5042s jalview-run-unit-test PASS 5042s command1 PASS 5042s picard-tools-run-unit-test PASS 5042s pilon-run-unit-test PASS 5069s Creating nova instance adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 5069s Creating nova instance adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 5069s Creating nova instance adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 5069s Creating nova instance adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 5069s Creating nova instance adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 5069s Creating nova instance adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 5069s Creating nova instance adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)... 5069s Creating nova instance adt-noble-arm64-htsjdk-20240324-172634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)...