0s autopkgtest [17:11:30]: starting date and time: 2024-03-16 17:11:30+0000 0s autopkgtest [17:11:30]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:11:30]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ggb9jgbv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:htslib,src:curl,src:gnutls28,src:libpsl,src:nettle,src:openssl --apt-upgrade hts-nim-tools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=htslib/1.19+ds-1.1build2 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-5.secgroup --name adt-noble-arm64-hts-nim-tools-20240316-171130-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 165s autopkgtest [17:14:15]: testbed dpkg architecture: arm64 165s autopkgtest [17:14:15]: testbed apt version: 2.7.12 165s autopkgtest [17:14:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 167s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 167s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 168s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 168s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 168s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 170s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 170s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 170s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 170s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 170s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 170s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 170s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 170s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 180s Fetched 9063 kB in 6s (1606 kB/s) 180s Reading package lists... 187s Reading package lists... 188s Building dependency tree... 188s Reading state information... 189s Calculating upgrade... 190s The following packages will be REMOVED: 190s libssl3 190s The following NEW packages will be installed: 190s libssl3t64 190s The following packages have been kept back: 190s curl 190s The following packages will be upgraded: 190s openssl 191s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 191s Need to get 2753 kB of archives. 191s After this operation, 72.7 kB of additional disk space will be used. 191s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 191s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 193s Fetched 2753 kB in 1s (2588 kB/s) 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 193s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 193s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 194s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 194s wget depends on libssl3 (>= 3.0.0). 194s u-boot-tools depends on libssl3 (>= 3.0.0). 194s tnftp depends on libssl3 (>= 3.0.0). 194s tcpdump depends on libssl3 (>= 3.0.0). 194s systemd-resolved depends on libssl3 (>= 3.0.0). 194s systemd depends on libssl3 (>= 3.0.0). 194s sudo depends on libssl3 (>= 3.0.0). 194s sbsigntool depends on libssl3 (>= 3.0.0). 194s rsync depends on libssl3 (>= 3.0.0). 194s python3-cryptography depends on libssl3 (>= 3.0.0). 194s openssh-server depends on libssl3 (>= 3.0.10). 194s openssh-client depends on libssl3 (>= 3.0.10). 194s mtd-utils depends on libssl3 (>= 3.0.0). 194s mokutil depends on libssl3 (>= 3.0.0). 194s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 194s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 194s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 194s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 194s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 194s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 194s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 194s libnvme1 depends on libssl3 (>= 3.0.0). 194s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 194s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 194s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 194s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 194s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 194s kmod depends on libssl3 (>= 3.0.0). 194s dhcpcd-base depends on libssl3 (>= 3.0.0). 194s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 194s 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 194s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 194s Selecting previously unselected package libssl3t64:arm64. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 194s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 194s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 195s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 195s Setting up openssl (3.0.13-0ubuntu1) ... 195s Processing triggers for man-db (2.12.0-3) ... 196s Processing triggers for libc-bin (2.39-0ubuntu2) ... 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 201s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 202s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 202s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 202s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 202s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 208s Reading package lists... 208s Reading package lists... 209s Building dependency tree... 209s Reading state information... 210s Calculating upgrade... 212s The following packages have been kept back: 212s curl 212s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 214s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 219s autopkgtest [17:15:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 219s autopkgtest [17:15:09]: @@@@@@@@@@@@@@@@@@@@ apt-source hts-nim-tools 221s Get:1 http://ftpmaster.internal/ubuntu noble/universe hts-nim-tools 0.2.1-1 (dsc) [2248 B] 221s Get:2 http://ftpmaster.internal/ubuntu noble/universe hts-nim-tools 0.2.1-1 (tar) [6803 B] 221s Get:3 http://ftpmaster.internal/ubuntu noble/universe hts-nim-tools 0.2.1-1 (diff) [3496 B] 222s gpgv: Signature made Fri Nov 13 18:33:15 2020 UTC 222s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 222s gpgv: issuer "npatra974@gmail.com" 222s gpgv: Can't check signature: No public key 222s dpkg-source: warning: cannot verify inline signature for ./hts-nim-tools_0.2.1-1.dsc: no acceptable signature found 222s autopkgtest [17:15:12]: testing package hts-nim-tools version 0.2.1-1 222s autopkgtest [17:15:12]: build not needed 223s autopkgtest [17:15:13]: test run-unit-test: preparing testbed 225s Reading package lists... 225s Building dependency tree... 225s Reading state information... 226s Starting pkgProblemResolver with broken count: 0 227s Starting 2 pkgProblemResolver with broken count: 0 227s Done 228s The following additional packages will be installed: 228s curl hts-nim-tools libc-dev-bin libc6-dev libcrypt-dev libcurl3t64-gnutls 228s libcurl4-gnutls-dev libcurl4t64 libdeflate-dev libdeflate0 libgnutls30t64 228s libhogweed6t64 libhts-dev libhts3t64 libhtscodecs2 liblzma-dev libnettle8t64 228s libnsl-dev libpcre3 libpsl5t64 libtirpc-dev linux-libc-dev nim nim-hts-dev 228s nim-hts-examples rpcsvc-proto zlib1g-dev 228s Suggested packages: 228s glibc-doc manpages-dev libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev 228s libldap2-dev librtmp-dev libssh2-1-dev pkg-config gnutls-bin liblzma-doc 228s nim-doc 228s Recommended packages: 228s manpages manpages-dev libc-devtools build-essential gcc git 229s The following packages will be REMOVED: 229s libcurl3-gnutls libcurl4 libgnutls30 libhogweed6 libnettle8 libpsl5 229s The following NEW packages will be installed: 229s autopkgtest-satdep hts-nim-tools libc-dev-bin libc6-dev libcrypt-dev 229s libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdeflate-dev 229s libdeflate0 libgnutls30t64 libhogweed6t64 libhts-dev libhts3t64 229s libhtscodecs2 liblzma-dev libnettle8t64 libnsl-dev libpcre3 libpsl5t64 229s libtirpc-dev linux-libc-dev nim nim-hts-dev nim-hts-examples rpcsvc-proto 229s zlib1g-dev 229s The following packages will be upgraded: 229s curl 229s 1 upgraded, 27 newly installed, 6 to remove and 0 not upgraded. 229s Need to get 20.0 MB/20.0 MB of archives. 229s After this operation, 55.5 MB of additional disk space will be used. 229s Get:1 /tmp/autopkgtest.ONAolT/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 229s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnettle8t64 arm64 3.9.1-2.2 [192 kB] 230s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libhogweed6t64 arm64 3.9.1-2.2 [199 kB] 230s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgnutls30t64 arm64 3.8.3-1.1ubuntu2 [1042 kB] 230s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 230s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 230s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 230s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl3t64-gnutls arm64 8.5.0-2ubuntu7 [327 kB] 230s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libpcre3 arm64 2:8.39-15 [233 kB] 230s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 nim arm64 1.6.14-1 [4265 kB] 231s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 nim-hts-dev all 0.3.19+ds-1 [35.0 kB] 231s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 hts-nim-tools arm64 0.2.1-1 [173 kB] 231s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 231s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 231s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 231s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 231s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 231s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 231s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 231s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-gnutls-dev arm64 8.5.0-2ubuntu7 [448 kB] 231s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 231s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate-dev arm64 1.19-1 [51.2 kB] 231s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 231s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhts3t64 arm64 1.19+ds-1.1build2 [429 kB] 231s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 231s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 231s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhts-dev arm64 1.19+ds-1.1build2 [5879 kB] 232s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 nim-hts-examples all 0.3.19+ds-1 [1167 kB] 233s Fetched 20.0 MB in 3s (6665 kB/s) 233s dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: 233s librtmp1:arm64 depends on libhogweed6. 233s libjcat1:arm64 depends on libhogweed6. 233s libgnutls30:arm64 depends on libhogweed6 (>= 3.6). 233s 233s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 233s Removing libhogweed6:arm64 (3.9.1-2) ... 233s dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: 233s librtmp1:arm64 depends on libnettle8. 233s libgnutls30:arm64 depends on libnettle8 (>= 3.9~). 233s libcurl3-gnutls:arm64 depends on libnettle8. 233s libarchive13:arm64 depends on libnettle8. 233s 233s Removing libnettle8:arm64 (3.9.1-2) ... 233s Selecting previously unselected package libnettle8t64:arm64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75840 files and directories currently installed.) 234s Preparing to unpack .../libnettle8t64_3.9.1-2.2_arm64.deb ... 234s Unpacking libnettle8t64:arm64 (3.9.1-2.2) ... 234s Selecting previously unselected package libhogweed6t64:arm64. 234s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_arm64.deb ... 234s Unpacking libhogweed6t64:arm64 (3.9.1-2.2) ... 234s dpkg: libgnutls30:arm64: dependency problems, but removing anyway as you requested: 234s u-boot-tools depends on libgnutls30 (>= 3.7.3). 234s librtmp1:arm64 depends on libgnutls30 (>= 3.7.2). 234s libldap2:arm64 depends on libgnutls30 (>= 3.8.2). 234s libjcat1:arm64 depends on libgnutls30 (>= 3.7.3). 234s libcurl3-gnutls:arm64 depends on libgnutls30 (>= 3.8.2). 234s fwupd depends on libgnutls30 (>= 3.7.3). 234s dirmngr depends on libgnutls30 (>= 3.8.1). 234s apt depends on libgnutls30 (>= 3.8.1). 234s 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75854 files and directories currently installed.) 234s Removing libgnutls30:arm64 (3.8.3-1ubuntu1) ... 234s Selecting previously unselected package libgnutls30t64:arm64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75845 files and directories currently installed.) 234s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_arm64.deb ... 234s Unpacking libgnutls30t64:arm64 (3.8.3-1.1ubuntu2) ... 235s dpkg: libcurl4:arm64: dependency problems, but removing anyway as you requested: 235s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 235s 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75873 files and directories currently installed.) 235s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 235s Selecting previously unselected package libcurl4t64:arm64. 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 235s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 235s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 235s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 235s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 235s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 235s wget depends on libpsl5 (>= 0.16.0). 235s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 235s 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75874 files and directories currently installed.) 235s Removing libpsl5:arm64 (0.21.2-1build1) ... 235s Selecting previously unselected package libpsl5t64:arm64. 236s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 236s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 236s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 236s dpkg: libcurl3-gnutls:arm64: dependency problems, but removing anyway as you requested: 236s libfwupd2:arm64 depends on libcurl3-gnutls (>= 7.63.0). 236s fwupd depends on libcurl3-gnutls (>= 7.63.0). 236s 236s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75875 files and directories currently installed.) 236s Removing libcurl3-gnutls:arm64 (8.5.0-2ubuntu2) ... 236s Selecting previously unselected package libcurl3t64-gnutls:arm64. 236s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 236s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu7_arm64.deb ... 236s Unpacking libcurl3t64-gnutls:arm64 (8.5.0-2ubuntu7) ... 236s Selecting previously unselected package libpcre3:arm64. 236s Preparing to unpack .../01-libpcre3_2%3a8.39-15_arm64.deb ... 236s Unpacking libpcre3:arm64 (2:8.39-15) ... 236s Selecting previously unselected package nim. 236s Preparing to unpack .../02-nim_1.6.14-1_arm64.deb ... 236s Unpacking nim (1.6.14-1) ... 237s Selecting previously unselected package nim-hts-dev. 237s Preparing to unpack .../03-nim-hts-dev_0.3.19+ds-1_all.deb ... 237s Unpacking nim-hts-dev (0.3.19+ds-1) ... 237s Selecting previously unselected package hts-nim-tools. 237s Preparing to unpack .../04-hts-nim-tools_0.2.1-1_arm64.deb ... 237s Unpacking hts-nim-tools (0.2.1-1) ... 237s Selecting previously unselected package libc-dev-bin. 237s Preparing to unpack .../05-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 237s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 238s Selecting previously unselected package linux-libc-dev:arm64. 238s Preparing to unpack .../06-linux-libc-dev_6.8.0-11.11_arm64.deb ... 238s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 239s Selecting previously unselected package libcrypt-dev:arm64. 239s Preparing to unpack .../07-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 239s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 239s Selecting previously unselected package libtirpc-dev:arm64. 239s Preparing to unpack .../08-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 239s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 239s Selecting previously unselected package libnsl-dev:arm64. 239s Preparing to unpack .../09-libnsl-dev_1.3.0-3_arm64.deb ... 239s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 239s Selecting previously unselected package rpcsvc-proto. 239s Preparing to unpack .../10-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 239s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 239s Selecting previously unselected package libc6-dev:arm64. 239s Preparing to unpack .../11-libc6-dev_2.39-0ubuntu2_arm64.deb ... 239s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 240s Selecting previously unselected package libcurl4-gnutls-dev:arm64. 240s Preparing to unpack .../12-libcurl4-gnutls-dev_8.5.0-2ubuntu7_arm64.deb ... 240s Unpacking libcurl4-gnutls-dev:arm64 (8.5.0-2ubuntu7) ... 240s Selecting previously unselected package libdeflate0:arm64. 240s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 240s Unpacking libdeflate0:arm64 (1.19-1) ... 240s Selecting previously unselected package libdeflate-dev:arm64. 240s Preparing to unpack .../14-libdeflate-dev_1.19-1_arm64.deb ... 240s Unpacking libdeflate-dev:arm64 (1.19-1) ... 240s Selecting previously unselected package libhtscodecs2:arm64. 240s Preparing to unpack .../15-libhtscodecs2_1.6.0-1_arm64.deb ... 240s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 240s Selecting previously unselected package libhts3t64:arm64. 240s Preparing to unpack .../16-libhts3t64_1.19+ds-1.1build2_arm64.deb ... 240s Unpacking libhts3t64:arm64 (1.19+ds-1.1build2) ... 240s Selecting previously unselected package liblzma-dev:arm64. 240s Preparing to unpack .../17-liblzma-dev_5.4.5-0.3_arm64.deb ... 240s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 241s Selecting previously unselected package zlib1g-dev:arm64. 241s Preparing to unpack .../18-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 241s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 241s Selecting previously unselected package libhts-dev:arm64. 241s Preparing to unpack .../19-libhts-dev_1.19+ds-1.1build2_arm64.deb ... 241s Unpacking libhts-dev:arm64 (1.19+ds-1.1build2) ... 241s Selecting previously unselected package nim-hts-examples. 241s Preparing to unpack .../20-nim-hts-examples_0.3.19+ds-1_all.deb ... 241s Unpacking nim-hts-examples (0.3.19+ds-1) ... 241s Selecting previously unselected package autopkgtest-satdep. 241s Preparing to unpack .../21-1-autopkgtest-satdep.deb ... 241s Unpacking autopkgtest-satdep (0) ... 241s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 241s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 241s Setting up libdeflate0:arm64 (1.19-1) ... 241s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 241s Setting up libpcre3:arm64 (2:8.39-15) ... 242s Setting up libnettle8t64:arm64 (3.9.1-2.2) ... 242s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 242s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 242s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 242s Setting up libhogweed6t64:arm64 (3.9.1-2.2) ... 242s Setting up libnsl-dev:arm64 (1.3.0-3) ... 242s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 242s Setting up nim (1.6.14-1) ... 242s Setting up libc-dev-bin (2.39-0ubuntu2) ... 242s Setting up libdeflate-dev:arm64 (1.19-1) ... 242s Setting up nim-hts-examples (0.3.19+ds-1) ... 242s Setting up libgnutls30t64:arm64 (3.8.3-1.1ubuntu2) ... 242s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 242s Setting up libcurl3t64-gnutls:arm64 (8.5.0-2ubuntu7) ... 242s Setting up libcurl4-gnutls-dev:arm64 (8.5.0-2ubuntu7) ... 242s Setting up nim-hts-dev (0.3.19+ds-1) ... 242s Setting up libhts3t64:arm64 (1.19+ds-1.1build2) ... 242s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 242s Setting up curl (8.5.0-2ubuntu7) ... 242s Setting up hts-nim-tools (0.2.1-1) ... 242s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 242s Setting up libhts-dev:arm64 (1.19+ds-1.1build2) ... 242s Setting up autopkgtest-satdep (0) ... 242s Processing triggers for man-db (2.12.0-3) ... 243s Processing triggers for libc-bin (2.39-0ubuntu2) ... 251s (Reading database ... 78237 files and directories currently installed.) 251s Removing autopkgtest-satdep (0) ... 252s autopkgtest [17:15:42]: test run-unit-test: [----------------------- 252s Test 1 252s SRR741409.55403397 163 6 32815223 60 101M = 32815450 307 AGGCAAGACTACTGGGGTTTCAGCAAAGGTAAAGATGGCTGGGGGGTGAGATGAGGGGAGAGAGTACCTGTGTCATAGCCCTGAGGGAGTCCAGAGATGAA 3I76FEC-CF:CDDBEEF?+EDAGHGIGGGBH;G?KGC)HF:@$;2@=ED?AFD@%--9?.632B+7>DFMAFDDDDGGGG6=9G+9BAED X0:i:1 X1:i:0 MD:Z:43T11T45 RG:Z:SRR741409 AM:i:37 NM:i:2 SM:i:37 MQ:i:60 XT:A:U BQ:Z:@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@GI 252s SRR741410.29215685 147 6 32815248 60 35S66M = 32814948 -365 TGAAGGATAAAGGCAAGGCTACTGGGGTTTCAGCGAAGGTAAAGATGGCTGGGTGGTAAGATGAGGGGAGAGAGTACCTGTGTCATAGCCCTGAGGGAGTC ####################################KC,3+48>+.:J32A>>D;>**5-(F81@J?@B@?-BC@3 X0:i:1 X1:i:0 XC:i:66 MD:Z:22G7T35 RG:Z:SRR741410 AM:i:37 NM:i:2 SM:i:37 MQ:i:60 XT:A:U BQ:Z:@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ 252s SRR741410.55980768 147 6 32816034 60 101M = 32815881 -253 GGAGTAGAGATAGAAGAAGCAGCAAAGACAAGGGCAGAGACCCAGCACCACTATGCCACACACTTGATGTCAGATACCACCAGGATAGGGAAAAATCACAT CGHFDIHIIJGNNLONENIIKJKIIJJIJGJFLFJHFHFECFGIEHGFFFG@FHHGEKDJDFGFEGCED@KHEG>EIFCEFDDI7(HHHH>?EEFCEAJD3 X0:i:1 X1:i:0 MD:Z:20G64A15 RG:Z:SRR741410 AM:i:37 NM:i:2 SM:i:37 MQ:i:60 XT:A:U BQ:Z:AB@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ 252s SRR741410.35483374 147 6 32816073 60 5S96M = 32815822 -346 CAGAGGCCCAGCACCACTATGCCACACACTTGATGTCAGATCCCACCAGGAAAGGGAAAAATCACATTCCAAATTACAAAGGAAAAGGAAAGATGGAAGAC ######DHEJB@88>4BCF7C(0BC8C7>D?D7C<7GFDE:'C8FEGF@CCEGDAGEFCDEFK>LG;DFGG>BJA?H/3C:*1CFFF*GFBF>F@G)5E-DLMEFHA?FFMKG?IB<-BCEII6+2JE######### X0:i:1 X1:i:0 XC:i:93 MD:Z:56A2C33 RG:Z:SRR741410 AM:i:29 NM:i:2 SM:i:29 MQ:i:29 XT:A:U BQ:Z:@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ 252s ======================================= 252s PASS 253s autopkgtest [17:15:43]: test run-unit-test: -----------------------] 253s autopkgtest [17:15:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 253s run-unit-test PASS 254s autopkgtest [17:15:44]: @@@@@@@@@@@@@@@@@@@@ summary 254s run-unit-test PASS 272s Creating nova instance adt-noble-arm64-hts-nim-tools-20240316-171130-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...