0s autopkgtest [07:32:53]: starting date and time: 2024-03-24 07:32:53+0000 0s autopkgtest [07:32:53]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [07:32:53]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qx37lz0q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:augustus,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade gffread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=augustus/3.5.0+dfsg-4build2 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-20.secgroup --name adt-noble-arm64-gffread-20240324-073252-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 99s autopkgtest [07:34:32]: testbed dpkg architecture: arm64 99s autopkgtest [07:34:32]: testbed apt version: 2.7.12 99s autopkgtest [07:34:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 101s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4004 kB] 101s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 101s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 101s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [706 kB] 102s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 102s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 102s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 102s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4359 kB] 102s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 102s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 102s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 107s Fetched 9858 kB in 3s (3475 kB/s) 108s Reading package lists... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 114s Calculating upgrade... 114s The following packages will be REMOVED: 114s libssl3 114s The following NEW packages will be installed: 114s libssl3t64 114s The following packages have been kept back: 114s curl 114s The following packages will be upgraded: 114s openssl 114s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 114s Need to get 2777 kB of archives. 114s After this operation, 139 kB of additional disk space will be used. 114s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 116s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 117s Fetched 2777 kB in 2s (1249 kB/s) 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 118s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 118s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 118s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 118s wget depends on libssl3 (>= 3.0.0). 118s u-boot-tools depends on libssl3 (>= 3.0.0). 118s tnftp depends on libssl3 (>= 3.0.0). 118s tcpdump depends on libssl3 (>= 3.0.0). 118s systemd-resolved depends on libssl3 (>= 3.0.0). 118s systemd depends on libssl3 (>= 3.0.0). 118s sudo depends on libssl3 (>= 3.0.0). 118s sbsigntool depends on libssl3 (>= 3.0.0). 118s rsync depends on libssl3 (>= 3.0.0). 118s python3-cryptography depends on libssl3 (>= 3.0.0). 118s openssh-server depends on libssl3 (>= 3.0.10). 118s openssh-client depends on libssl3 (>= 3.0.10). 118s mtd-utils depends on libssl3 (>= 3.0.0). 118s mokutil depends on libssl3 (>= 3.0.0). 118s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 118s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 118s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 118s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 118s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 118s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 118s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 118s libnvme1 depends on libssl3 (>= 3.0.0). 118s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 118s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 118s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 118s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 118s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 118s kmod depends on libssl3 (>= 3.0.0). 118s dhcpcd-base depends on libssl3 (>= 3.0.0). 118s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 118s 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 118s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 118s Selecting previously unselected package libssl3t64:arm64. 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 118s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 118s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 118s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 118s Setting up openssl (3.0.13-0ubuntu2) ... 118s Processing triggers for man-db (2.12.0-3) ... 119s Processing triggers for libc-bin (2.39-0ubuntu6) ... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 123s sh: Attempting to set up Debian/Ubuntu apt sources automatically 123s sh: Distribution appears to be Ubuntu 124s Reading package lists... 125s Building dependency tree... 125s Reading state information... 126s eatmydata is already the newest version (131-1). 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s dbus is already the newest version (1.14.10-4ubuntu1). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s rng-tools-debian is already the newest version (2.4). 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s The following packages will be REMOVED: 130s cloud-init* python3-configobj* python3-debconf* 130s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 130s After this operation, 3256 kB disk space will be freed. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 131s Removing cloud-init (24.1.2-0ubuntu1) ... 132s Removing python3-configobj (5.0.8-3) ... 132s Removing python3-debconf (1.5.86) ... 132s Processing triggers for man-db (2.12.0-3) ... 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 133s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 134s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 134s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 134s invoke-rc.d: policy-rc.d denied execution of try-restart. 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s linux-generic is already the newest version (6.8.0-11.11+1). 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 137s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 137s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 142s Reading package lists... 142s Reading package lists... 143s Building dependency tree... 143s Reading state information... 144s Calculating upgrade... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Reading package lists... 145s Building dependency tree... 145s Reading state information... 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s autopkgtest [07:35:19]: rebooting testbed after setup commands that affected boot 304s autopkgtest [07:37:57]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 308s autopkgtest [07:38:01]: @@@@@@@@@@@@@@@@@@@@ apt-source gffread 310s Get:1 http://ftpmaster.internal/ubuntu noble/universe gffread 0.12.7-4 (dsc) [2440 B] 310s Get:2 http://ftpmaster.internal/ubuntu noble/universe gffread 0.12.7-4 (tar) [404 kB] 310s Get:3 http://ftpmaster.internal/ubuntu noble/universe gffread 0.12.7-4 (diff) [8828 B] 311s gpgv: Signature made Tue Jun 20 19:16:45 2023 UTC 311s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 311s gpgv: issuer "emollier@debian.org" 311s gpgv: Can't check signature: No public key 311s dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-4.dsc: no acceptable signature found 311s autopkgtest [07:38:04]: testing package gffread version 0.12.7-4 311s autopkgtest [07:38:04]: build not needed 312s autopkgtest [07:38:05]: test run-tests: preparing testbed 322s Reading package lists... 322s Building dependency tree... 322s Reading state information... 323s Starting pkgProblemResolver with broken count: 0 323s Starting 2 pkgProblemResolver with broken count: 0 323s Done 324s The following additional packages will be installed: 324s apache2 apache2-bin apache2-data apache2-utils augustus-doc bedtools-test 324s bioperl blt bowtie2 cnvkit cutadapt diamond-aligner emboss-data emboss-test 324s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra 324s fonts-dejavu-mono fonts-lyx fonts-urw-base35 gbrowse genometools-common 324s gff2aplot gff2ps gffread htslib-test libalgorithm-diff-perl 324s libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl 324s libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 324s libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-coordinate-perl 324s libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl 324s libbio-graphics-perl libbio-perl-perl libblas3 libcairo2 324s libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl 324s libclass-data-inheritable-perl libclone-perl libcommon-sense-perl 324s libdata-stag-perl libdatrie1 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl 324s libdeflate0 libdevel-stacktrace-perl libdevel-symdump-perl 324s libencode-locale-perl libexception-class-perl libexporter-tiny-perl 324s libfile-listing-perl libfontconfig1 libfontenc1 libgclib3 libgd-perl libgd3 324s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhtml-parser-perl 324s libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 324s libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl 324s libhttp-message-perl libhttp-negotiate-perl libice6 libimagequant0 324s libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0 324s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-prototype 324s libjs-scriptaculous libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4 324s liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.1-0 liblua5.4-0 324s liblwp-mediatypes-perl liblwp-protocol-https-perl libmbedcrypto7 324s libmbedtls14 libmbedx509-1 libnet-http-perl libnet-ssleay-perl libopenjp2-7 324s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 324s libpaper1 libpixman-1-0 libpq5 libqhull-r8.0 libraqm0 libsharpyuv0 libsm6 324s libstatistics-descriptive-perl libstring-approx-perl libsub-uplevel-perl 324s libtcl8.6 libterm-readkey-perl libtest-deep-perl libtest-differences-perl 324s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 324s libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtre5 324s libtry-tiny-perl liburi-perl libvm-ec2-perl libwebp7 libwebpdemux2 324s libwebpmux3 libwww-perl libwww-robotrules-perl libxcb-render0 libxcb-shm0 324s libxft2 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl 324s libxml-sax-perl libxml-simple-perl libxpm4 libxrender1 libxslt1.1 libxss1 324s libxt6 ncbi-blast+ ncbi-data optimir perl-openssl-defaults pigz proteinortho 324s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 324s python3-biopython python3-brotli python3-cairo python3-contourpy 324s python3-cutadapt python3-cycler python3-dateutil python3-decorator 324s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 324s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 324s python3-lz4 python3-matplotlib python3-more-itertools python3-mpmath 324s python3-networkx python3-numpy python3-packaging python3-pandas 324s python3-pandas-lib python3-pil python3-pil.imagetk python3-pomegranate 324s python3-pybedtools python3-pyfaidx python3-pysam python3-reportlab 324s python3-rlpycairo python3-scipy python3-simplejson python3-sklearn 324s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 324s python3-ufolib2 python3-unicodedata2 python3-xopen python3-zipp r-base-core 324s r-bioc-biocgenerics r-bioc-dnacopy samtools seqan-apps sgml-base sqlite3 324s tk8.6-blt2.5 unicode-data unzip w3c-sgml-lib x11-common xdg-utils 324s xfonts-encodings xfonts-utils xml-core zip 324s Suggested packages: 324s apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser 324s bedtools blt-demo bowtie2-examples valgrind fonts-freefont-otf 324s | fonts-freefont-ttf fonts-texgyre gbrowse-data gbrowse-calign 324s libfile-nfslock-perl postscript-viewer libev-perl libevent-perl 324s libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl 324s libmldbm-perl libnet-daemon-perl libsql-statement-perl libgd-tools 324s libdata-dump-perl libio-compress-brotli-perl libjs-jquery-ui-docs 324s liblcms2-utils libcrypt-ssleay-perl tcl8.6 tk8.6 tre-agrep libsub-name-perl 324s libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl debhelper bwa 324s clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml 324s prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 324s raxml t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal 324s dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 324s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 324s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 324s texlive-latex-extra python-mpmath-doc python3-gmpy2 python-networkx-doc 324s python3-gdal python3-pydot python3-pygraphviz gcc gfortran python3-dev 324s python3-pytest python-pandas-doc python3-statsmodels python-pil-doc 324s python-pomegranate-doc python-pybedtools-doc pdf-viewer 324s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 324s python-scipy-doc python3-dap python-sklearn-doc texlive-fonts-extra 324s python-sympy-doc tix python3-tk-dbg elpa-ess r-doc-info | r-doc-pdf 324s r-mathlib r-base-html r-bioc-biobase r-bioc-s4vectors r-bioc-iranges 324s r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools 324s r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit 324s cwltool cwltool | cwl-runner sgml-base-doc sqlite3-doc 324s Recommended packages: 324s ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl 324s libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl med-config tcsh 324s | csh | c-shell graphicsmagick | imagemagick ghostscript gv 324s | postscript-viewer libalgorithm-diff-xs-perl libasync-interrupt-perl 324s libev-perl | libevent-perl libguard-perl libapache2-reload-perl 324s libbsd-resource-perl libbio-scf-perl libberkeleydb-perl libgd-svg-perl 324s bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl 324s libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl 324s libdbd-mysql-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl 324s libpostscript-perl libsoap-lite-perl libsort-naturally-perl 324s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 324s libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl 324s libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl 324s libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl 324s libhtml-format-perl javascript-common libjson-xs-perl libdata-dump-perl 324s libhtml-form-perl libmailtools-perl libxml-sax-expat-perl r-cran-gridextra 324s r-cran-ggplot2 python-biopython-doc python3-pytest python3-psutil 324s python3-bs4 python3-cssselect python3-html5lib python3-bottleneck 324s python3-numexpr python3-odf python3-openpyxl python3-tables python3-olefile 324s g++ | c++-compiler isympy-common r-recommended r-base-dev r-doc-html 324s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 324s x11-xserver-utils 324s The following NEW packages will be installed: 324s apache2 apache2-bin apache2-data apache2-utils augustus-doc 324s autopkgtest-satdep bedtools-test bioperl blt bowtie2 cnvkit cutadapt 324s diamond-aligner emboss-data emboss-test fontconfig fontconfig-config 324s fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-lyx 324s fonts-urw-base35 gbrowse genometools-common gff2aplot gff2ps gffread 324s htslib-test libalgorithm-diff-perl libanyevent-cachedns-perl 324s libanyevent-http-perl libanyevent-perl libapache-dbi-perl 324s libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 324s libaprutil1-ldap libbio-coordinate-perl libbio-db-biofetch-perl 324s libbio-db-gff-perl libbio-db-seqfeature-perl libbio-graphics-perl 324s libbio-perl-perl libblas3 libcairo2 libcapture-tiny-perl libcgi-pm-perl 324s libcgi-session-perl libclass-data-inheritable-perl libclone-perl 324s libcommon-sense-perl libdata-stag-perl libdatrie1 libdbd-pg-perl 324s libdbd-sqlite3-perl libdbi-perl libdeflate0 libdevel-stacktrace-perl 324s libdevel-symdump-perl libencode-locale-perl libexception-class-perl 324s libexporter-tiny-perl libfile-listing-perl libfontconfig1 libfontenc1 324s libgclib3 libgd-perl libgd3 libgfortran5 libgomp1 libgraphite2-3 324s libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl 324s libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl 324s libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 324s libimagequant0 libio-html-perl libio-socket-ssl-perl libio-string-perl 324s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 324s libjs-prototype libjs-scriptaculous libjson-perl liblapack3 liblbfgsb0 324s liblcms2-2 liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl 324s liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl 324s libmbedcrypto7 libmbedtls14 libmbedx509-1 libnet-http-perl 324s libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 324s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5 324s libqhull-r8.0 libraqm0 libsharpyuv0 libsm6 libstatistics-descriptive-perl 324s libstring-approx-perl libsub-uplevel-perl libtcl8.6 libterm-readkey-perl 324s libtest-deep-perl libtest-differences-perl libtest-exception-perl 324s libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 324s libtiff6 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl liburi-perl 324s libvm-ec2-perl libwebp7 libwebpdemux2 libwebpmux3 libwww-perl 324s libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-libxml-perl 324s libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl 324s libxml-simple-perl libxpm4 libxrender1 libxslt1.1 libxss1 libxt6 ncbi-blast+ 324s ncbi-data optimir perl-openssl-defaults pigz proteinortho 324s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 324s python3-biopython python3-brotli python3-cairo python3-contourpy 324s python3-cutadapt python3-cycler python3-dateutil python3-decorator 324s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 324s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 324s python3-lz4 python3-matplotlib python3-more-itertools python3-mpmath 324s python3-networkx python3-numpy python3-packaging python3-pandas 324s python3-pandas-lib python3-pil python3-pil.imagetk python3-pomegranate 324s python3-pybedtools python3-pyfaidx python3-pysam python3-reportlab 324s python3-rlpycairo python3-scipy python3-simplejson python3-sklearn 324s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 324s python3-ufolib2 python3-unicodedata2 python3-xopen python3-zipp r-base-core 324s r-bioc-biocgenerics r-bioc-dnacopy samtools seqan-apps sgml-base sqlite3 324s tk8.6-blt2.5 unicode-data unzip w3c-sgml-lib x11-common xdg-utils 324s xfonts-encodings xfonts-utils xml-core zip 324s 0 upgraded, 233 newly installed, 0 to remove and 0 not upgraded. 324s Need to get 332 MB/332 MB of archives. 324s After this operation, 1663 MB of additional disk space will be used. 324s Get:1 /tmp/autopkgtest.hifpiU/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [848 B] 325s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libapr1 arm64 1.7.2-3 [103 kB] 325s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libaprutil1 arm64 1.6.3-1ubuntu1 [91.7 kB] 325s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libaprutil1-dbd-sqlite3 arm64 1.6.3-1ubuntu1 [11.0 kB] 325s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libaprutil1-ldap arm64 1.6.3-1ubuntu1 [8972 B] 325s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 325s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 apache2-bin arm64 2.4.58-1ubuntu2 [1316 kB] 326s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 apache2-data all 2.4.58-1ubuntu2 [163 kB] 326s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 apache2-utils arm64 2.4.58-1ubuntu2 [94.9 kB] 326s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 apache2 arm64 2.4.58-1ubuntu2 [90.2 kB] 326s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 sgml-base all 1.31 [11.4 kB] 326s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 pigz arm64 2.8-1 [60.7 kB] 326s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 augustus-doc all 3.5.0+dfsg-4build1 [23.5 MB] 329s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 bedtools-test all 2.31.1+dfsg-2 [18.2 MB] 329s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 329s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 libdata-stag-perl all 0.14-3 [372 kB] 329s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-perl-perl all 1.7.8-1 [2580 kB] 329s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libclass-data-inheritable-perl all 0.08-3 [8084 B] 329s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 329s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libexception-class-perl all 1.45-1 [28.6 kB] 329s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-deep-perl all 1.204-1 [47.1 kB] 329s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libcapture-tiny-perl all 0.48-2 [20.2 kB] 329s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libalgorithm-diff-perl all 1.201-1 [41.8 kB] 329s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 libtext-diff-perl all 1.45-2 [25.6 kB] 329s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-differences-perl all 0.71-1 [15.8 kB] 329s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 libsub-uplevel-perl all 0.2800-3 [11.6 kB] 329s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-exception-perl all 0.43-3 [13.4 kB] 329s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-warn-perl all 0.37-2 [12.6 kB] 329s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-most-perl all 0.38-1 [21.5 kB] 329s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 bioperl all 1.7.8-1 [216 kB] 330s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 330s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 330s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 330s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.8-1 [13.9 kB] 330s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 330s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 330s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 xfonts-utils arm64 1:7.7+6build2 [93.6 kB] 330s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 330s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 330s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 330s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 330s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 330s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 330s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 330s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [618 kB] 330s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 blt arm64 2.5.3+dfsg-7 [4826 B] 330s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 330s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 330s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 330s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 330s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 python3-tk arm64 3.11.5-1 [112 kB] 330s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pil.imagetk arm64 10.2.0-1 [9708 B] 330s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 330s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libimagequant0 arm64 2.18.0-1 [37.0 kB] 330s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 330s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 330s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 330s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 330s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 330s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 330s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] 330s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 330s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 330s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 330s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 330s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 330s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 330s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 330s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 330s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pil arm64 10.2.0-1 [477 kB] 330s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 330s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 331s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 331s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 331s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-2 [153 kB] 331s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 2.4.0-1 [83.1 kB] 331s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 331s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-extra all 2.37-8 [1947 kB] 331s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-reportlab all 4.1.0-1 [683 kB] 331s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 xml-core all 0.19 [20.3 kB] 331s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 331s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biopython arm64 1.81+dfsg-3 [1664 kB] 331s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 331s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 331s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lyx all 2.4.0~RC3-1 [170 kB] 331s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 331s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 331s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-contourpy arm64 1.0.7-1build2 [244 kB] 331s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cycler all 0.11.0-2 [8202 B] 331s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-brotli arm64 1.1.0-2 [345 kB] 331s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 331s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] 331s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB] 331s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 331s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mpmath all 1.2.1-3 [421 kB] 331s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sympy all 1.12-7 [3966 kB] 331s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 331s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fs all 2.4.16-3 [91.1 kB] 331s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.39-0exp1 [166 kB] 331s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.1.0-1 [2042 kB] 331s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build2 [28.4 kB] 331s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1 [362 kB] 332s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 332s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fonttools arm64 4.46.0-1 [1625 kB] 333s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-kiwisolver arm64 1.4.4-2 [48.5 kB] 333s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 333s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 333s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-matplotlib arm64 3.6.3-1ubuntu3 [7291 kB] 333s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB] 333s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 333s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-joblib all 1.3.2-1 [207 kB] 333s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 python3-networkx all 2.8.8-1ubuntu1 [1468 kB] 333s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pomegranate arm64 0.14.8-4 [3885 kB] 334s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 python3-more-itertools all 10.2.0-1 [52.9 kB] 334s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 python3-zipp all 1.0.0-6 [6090 B] 334s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 python3-importlib-metadata all 4.12.0-1 [17.8 kB] 334s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pyfaidx all 0.8.1.1-1 [29.6 kB] 334s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 334s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 334s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB] 334s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 334s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn-lib arm64 1.4.1.post1+dfsg-1 [6663 kB] 336s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB] 336s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 336s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 336s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 336s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 336s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 336s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 336s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 336s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 336s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 336s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 336s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 336s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 336s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 336s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 336s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 336s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 336s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 336s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dnacopy arm64 1.76.0-1 [379 kB] 336s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 cnvkit arm64 0.9.10-1 [20.5 MB] 336s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-xopen all 1.7.0-2 [17.0 kB] 336s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-dnaio arm64 1.0.1-1build1 [84.9 kB] 336s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cutadapt arm64 4.4-1build1 [324 kB] 336s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 cutadapt all 4.4-1build1 [6776 B] 336s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 diamond-aligner arm64 2.1.9-1 [1905 kB] 336s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 emboss-data all 6.6.0+dfsg-12ubuntu1 [61.0 MB] 338s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 emboss-test all 6.6.0+dfsg-12ubuntu1 [4798 kB] 338s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 338s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libgd3 arm64 2.3.3-9ubuntu1 [119 kB] 338s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libgd-perl arm64 2.78-1build1 [125 kB] 338s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libdevel-symdump-perl all 2.18-5 [12.6 kB] 338s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 liburi-perl all 5.27-1 [88.0 kB] 338s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libencode-locale-perl all 1.05-3 [11.6 kB] 338s Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] 338s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-date-perl all 6.06-1 [10.2 kB] 338s Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-listing-perl all 6.16-1 [11.3 kB] 338s Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-tagset-perl all 3.20-6 [11.3 kB] 338s Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-parser-perl arm64 3.81-1build1 [84.8 kB] 338s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-tree-perl all 5.07-3 [200 kB] 338s Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 libclone-perl arm64 0.46-1build1 [10.4 kB] 338s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libio-html-perl all 1.004-3 [15.9 kB] 338s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 338s Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB] 338s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-cookies-perl all 6.11-1 [18.2 kB] 338s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-negotiate-perl all 6.01-2 [12.4 kB] 338s Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 perl-openssl-defaults arm64 7 [7536 B] 338s Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-ssleay-perl arm64 1.94-1 [311 kB] 338s Get:170 http://ftpmaster.internal/ubuntu noble/main arm64 libio-socket-ssl-perl all 2.085-1 [195 kB] 338s Get:171 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-http-perl all 6.23-1 [22.3 kB] 338s Get:172 http://ftpmaster.internal/ubuntu noble/main arm64 liblwp-protocol-https-perl all 6.13-1 [9006 B] 338s Get:173 http://ftpmaster.internal/ubuntu noble/main arm64 libtry-tiny-perl all 0.31-2 [20.8 kB] 338s Get:174 http://ftpmaster.internal/ubuntu noble/main arm64 libwww-robotrules-perl all 6.02-1 [12.6 kB] 338s Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 libwww-perl all 6.76-1 [138 kB] 338s Get:176 http://ftpmaster.internal/ubuntu noble/main arm64 libapache2-mod-perl2 arm64 2.0.13-1build1 [777 kB] 338s Get:177 http://ftpmaster.internal/ubuntu noble/main arm64 libdbi-perl arm64 1.643-4build1 [718 kB] 338s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-dbi-perl all 1.12-3 [40.5 kB] 338s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-db-biofetch-perl all 1.7.3-4 [17.1 kB] 338s Get:180 http://ftpmaster.internal/ubuntu noble/main arm64 libcgi-pm-perl all 4.62-1 [185 kB] 338s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-db-gff-perl all 1.7.4-1 [273 kB] 338s Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 338s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 libdbd-pg-perl arm64 3.18.0-1build1 [191 kB] 338s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 libdbd-sqlite3-perl arm64 1.74-1build1 [159 kB] 338s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-db-seqfeature-perl all 1.7.4-2 [169 kB] 339s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-graphics-perl all 2.40-6 [601 kB] 339s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-coordinate-perl all 1.7.1-4 [56.4 kB] 339s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 libcgi-session-perl all 4.48-4 [108 kB] 339s Get:189 http://ftpmaster.internal/ubuntu noble/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 339s Get:190 http://ftpmaster.internal/ubuntu noble/main arm64 libexporter-tiny-perl all 1.006002-1 [36.8 kB] 339s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 liblist-moreutils-xs-perl arm64 0.430-3build3 [40.9 kB] 339s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 liblist-moreutils-perl all 0.430-2 [38.2 kB] 339s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libstatistics-descriptive-perl all 3.0801-1 [58.7 kB] 339s Get:194 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-daemon-perl all 6.16-1 [22.4 kB] 339s Get:195 http://ftpmaster.internal/ubuntu noble/main arm64 libterm-readkey-perl arm64 2.38-2build2 [23.1 kB] 339s Get:196 http://ftpmaster.internal/ubuntu noble/main arm64 sqlite3 arm64 3.45.1-1 [140 kB] 339s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prototype all 1.7.3-1 [44.8 kB] 339s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-scriptaculous all 1.9.0-3 [92.6 kB] 339s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libanyevent-perl arm64 7.170-2build4 [368 kB] 339s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 libanyevent-cachedns-perl all 0.08-3 [7216 B] 339s Get:201 http://ftpmaster.internal/ubuntu noble/main arm64 libcommon-sense-perl arm64 3.75-3build1 [20.3 kB] 339s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 libanyevent-http-perl all 2.25-2 [30.3 kB] 339s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 libstring-approx-perl arm64 3.28-2build2 [34.7 kB] 339s Get:204 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-namespacesupport-perl all 1.12-2 [13.5 kB] 339s Get:205 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-sax-base-perl all 1.09-3 [18.9 kB] 339s Get:206 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] 339s Get:207 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1build2 [296 kB] 339s Get:208 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-simple-perl all 2.25-2 [64.1 kB] 339s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libvm-ec2-perl all 1.28-4 [766 kB] 339s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 gbrowse all 2.56+dfsg-12build1 [2181 kB] 340s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 gff2aplot arm64 2.0-15 [257 kB] 340s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 gff2ps all 0.98l-6 [63.1 kB] 340s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 libgclib3 arm64 0.12.7+ds-5 [148 kB] 340s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 gffread arm64 0.12.7-4 [62.5 kB] 340s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 htslib-test all 1.18+ds-1 [1120 kB] 340s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 liblua5.1-0 arm64 5.1.5-9 [115 kB] 340s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 340s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 340s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 340s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 libtre5 arm64 0.8.0-7 [47.3 kB] 340s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] 341s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-blast+ arm64 2.12.0+ds-4 [12.1 MB] 342s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 bowtie2 arm64 2.5.2-1 [1261 kB] 342s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 samtools arm64 1.19.2-1 [584 kB] 342s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 optimir all 1.2-1 [1128 kB] 342s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 proteinortho arm64 6.3.1+dfsg-1 [340 kB] 342s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-argcomplete all 3.1.4-1 [33.5 kB] 342s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-argh all 0.31.2-1 [26.9 kB] 342s Get:229 http://ftpmaster.internal/ubuntu noble/main arm64 python3-simplejson arm64 3.19.2-1build1 [61.4 kB] 342s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-gffutils all 0.12-2 [1078 kB] 342s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pybedtools arm64 0.9.1-1 [12.3 MB] 342s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 genometools-common all 1.6.5+ds-2 [194 kB] 342s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 seqan-apps arm64 2.4.0+dfsg-16 [11.8 MB] 344s Preconfiguring packages ... 344s Fetched 332 MB in 18s (18.2 MB/s) 344s Selecting previously unselected package libapr1:arm64. 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 345s Preparing to unpack .../000-libapr1_1.7.2-3_arm64.deb ... 345s Unpacking libapr1:arm64 (1.7.2-3) ... 345s Selecting previously unselected package libaprutil1:arm64. 345s Preparing to unpack .../001-libaprutil1_1.6.3-1ubuntu1_arm64.deb ... 345s Unpacking libaprutil1:arm64 (1.6.3-1ubuntu1) ... 345s Selecting previously unselected package libaprutil1-dbd-sqlite3:arm64. 345s Preparing to unpack .../002-libaprutil1-dbd-sqlite3_1.6.3-1ubuntu1_arm64.deb ... 345s Unpacking libaprutil1-dbd-sqlite3:arm64 (1.6.3-1ubuntu1) ... 345s Selecting previously unselected package libaprutil1-ldap:arm64. 345s Preparing to unpack .../003-libaprutil1-ldap_1.6.3-1ubuntu1_arm64.deb ... 345s Unpacking libaprutil1-ldap:arm64 (1.6.3-1ubuntu1) ... 345s Selecting previously unselected package liblua5.4-0:arm64. 345s Preparing to unpack .../004-liblua5.4-0_5.4.6-3_arm64.deb ... 345s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 345s Selecting previously unselected package apache2-bin. 345s Preparing to unpack .../005-apache2-bin_2.4.58-1ubuntu2_arm64.deb ... 345s Unpacking apache2-bin (2.4.58-1ubuntu2) ... 345s Selecting previously unselected package apache2-data. 345s Preparing to unpack .../006-apache2-data_2.4.58-1ubuntu2_all.deb ... 345s Unpacking apache2-data (2.4.58-1ubuntu2) ... 345s Selecting previously unselected package apache2-utils. 345s Preparing to unpack .../007-apache2-utils_2.4.58-1ubuntu2_arm64.deb ... 345s Unpacking apache2-utils (2.4.58-1ubuntu2) ... 345s Selecting previously unselected package apache2. 345s Preparing to unpack .../008-apache2_2.4.58-1ubuntu2_arm64.deb ... 345s Unpacking apache2 (2.4.58-1ubuntu2) ... 345s Selecting previously unselected package sgml-base. 346s Preparing to unpack .../009-sgml-base_1.31_all.deb ... 346s Unpacking sgml-base (1.31) ... 346s Selecting previously unselected package pigz. 346s Preparing to unpack .../010-pigz_2.8-1_arm64.deb ... 346s Unpacking pigz (2.8-1) ... 346s Selecting previously unselected package augustus-doc. 346s Preparing to unpack .../011-augustus-doc_3.5.0+dfsg-4build1_all.deb ... 346s Unpacking augustus-doc (3.5.0+dfsg-4build1) ... 348s Selecting previously unselected package bedtools-test. 348s Preparing to unpack .../012-bedtools-test_2.31.1+dfsg-2_all.deb ... 348s Unpacking bedtools-test (2.31.1+dfsg-2) ... 349s Selecting previously unselected package libio-string-perl. 349s Preparing to unpack .../013-libio-string-perl_1.08-4_all.deb ... 349s Unpacking libio-string-perl (1.08-4) ... 349s Selecting previously unselected package libdata-stag-perl. 349s Preparing to unpack .../014-libdata-stag-perl_0.14-3_all.deb ... 349s Unpacking libdata-stag-perl (0.14-3) ... 349s Selecting previously unselected package libbio-perl-perl. 349s Preparing to unpack .../015-libbio-perl-perl_1.7.8-1_all.deb ... 349s Unpacking libbio-perl-perl (1.7.8-1) ... 349s Selecting previously unselected package libclass-data-inheritable-perl. 349s Preparing to unpack .../016-libclass-data-inheritable-perl_0.08-3_all.deb ... 349s Unpacking libclass-data-inheritable-perl (0.08-3) ... 349s Selecting previously unselected package libdevel-stacktrace-perl. 349s Preparing to unpack .../017-libdevel-stacktrace-perl_2.0500-1_all.deb ... 349s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 349s Selecting previously unselected package libexception-class-perl. 349s Preparing to unpack .../018-libexception-class-perl_1.45-1_all.deb ... 349s Unpacking libexception-class-perl (1.45-1) ... 349s Selecting previously unselected package libtest-deep-perl. 349s Preparing to unpack .../019-libtest-deep-perl_1.204-1_all.deb ... 349s Unpacking libtest-deep-perl (1.204-1) ... 350s Selecting previously unselected package libcapture-tiny-perl. 350s Preparing to unpack .../020-libcapture-tiny-perl_0.48-2_all.deb ... 350s Unpacking libcapture-tiny-perl (0.48-2) ... 350s Selecting previously unselected package libalgorithm-diff-perl. 350s Preparing to unpack .../021-libalgorithm-diff-perl_1.201-1_all.deb ... 350s Unpacking libalgorithm-diff-perl (1.201-1) ... 350s Selecting previously unselected package libtext-diff-perl. 350s Preparing to unpack .../022-libtext-diff-perl_1.45-2_all.deb ... 350s Unpacking libtext-diff-perl (1.45-2) ... 350s Selecting previously unselected package libtest-differences-perl. 350s Preparing to unpack .../023-libtest-differences-perl_0.71-1_all.deb ... 350s Unpacking libtest-differences-perl (0.71-1) ... 350s Selecting previously unselected package libsub-uplevel-perl. 350s Preparing to unpack .../024-libsub-uplevel-perl_0.2800-3_all.deb ... 350s Unpacking libsub-uplevel-perl (0.2800-3) ... 350s Selecting previously unselected package libtest-exception-perl. 350s Preparing to unpack .../025-libtest-exception-perl_0.43-3_all.deb ... 350s Unpacking libtest-exception-perl (0.43-3) ... 350s Selecting previously unselected package libtest-warn-perl. 350s Preparing to unpack .../026-libtest-warn-perl_0.37-2_all.deb ... 350s Unpacking libtest-warn-perl (0.37-2) ... 350s Selecting previously unselected package libtest-most-perl. 350s Preparing to unpack .../027-libtest-most-perl_0.38-1_all.deb ... 350s Unpacking libtest-most-perl (0.38-1) ... 350s Selecting previously unselected package bioperl. 350s Preparing to unpack .../028-bioperl_1.7.8-1_all.deb ... 350s Unpacking bioperl (1.7.8-1) ... 350s Selecting previously unselected package libtcl8.6:arm64. 350s Preparing to unpack .../029-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 350s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 350s Selecting previously unselected package fonts-dejavu-mono. 350s Preparing to unpack .../030-fonts-dejavu-mono_2.37-8_all.deb ... 350s Unpacking fonts-dejavu-mono (2.37-8) ... 350s Selecting previously unselected package fonts-dejavu-core. 350s Preparing to unpack .../031-fonts-dejavu-core_2.37-8_all.deb ... 350s Unpacking fonts-dejavu-core (2.37-8) ... 351s Selecting previously unselected package libfontenc1:arm64. 351s Preparing to unpack .../032-libfontenc1_1%3a1.1.8-1_arm64.deb ... 351s Unpacking libfontenc1:arm64 (1:1.1.8-1) ... 351s Selecting previously unselected package x11-common. 351s Preparing to unpack .../033-x11-common_1%3a7.7+23ubuntu2_all.deb ... 351s Unpacking x11-common (1:7.7+23ubuntu2) ... 351s Selecting previously unselected package xfonts-encodings. 351s Preparing to unpack .../034-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 351s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 351s Selecting previously unselected package xfonts-utils. 351s Preparing to unpack .../035-xfonts-utils_1%3a7.7+6build2_arm64.deb ... 351s Unpacking xfonts-utils (1:7.7+6build2) ... 351s Selecting previously unselected package fonts-urw-base35. 351s Preparing to unpack .../036-fonts-urw-base35_20200910-8_all.deb ... 351s Unpacking fonts-urw-base35 (20200910-8) ... 351s Selecting previously unselected package fontconfig-config. 351s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 352s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 352s Selecting previously unselected package libfontconfig1:arm64. 352s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 352s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 352s Selecting previously unselected package libxrender1:arm64. 352s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 352s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 352s Selecting previously unselected package libxft2:arm64. 352s Preparing to unpack .../040-libxft2_2.3.6-1_arm64.deb ... 352s Unpacking libxft2:arm64 (2.3.6-1) ... 352s Selecting previously unselected package libxss1:arm64. 352s Preparing to unpack .../041-libxss1_1%3a1.2.3-1build2_arm64.deb ... 352s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 352s Selecting previously unselected package libtk8.6:arm64. 352s Preparing to unpack .../042-libtk8.6_8.6.14-1_arm64.deb ... 352s Unpacking libtk8.6:arm64 (8.6.14-1) ... 352s Selecting previously unselected package tk8.6-blt2.5. 352s Preparing to unpack .../043-tk8.6-blt2.5_2.5.3+dfsg-7_arm64.deb ... 352s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 352s Selecting previously unselected package blt. 352s Preparing to unpack .../044-blt_2.5.3+dfsg-7_arm64.deb ... 352s Unpacking blt (2.5.3+dfsg-7) ... 353s Selecting previously unselected package libblas3:arm64. 353s Preparing to unpack .../045-libblas3_3.12.0-3_arm64.deb ... 353s Unpacking libblas3:arm64 (3.12.0-3) ... 353s Selecting previously unselected package libgfortran5:arm64. 353s Preparing to unpack .../046-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 353s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 353s Selecting previously unselected package liblapack3:arm64. 353s Preparing to unpack .../047-liblapack3_3.12.0-3_arm64.deb ... 353s Unpacking liblapack3:arm64 (3.12.0-3) ... 353s Selecting previously unselected package python3-numpy. 353s Preparing to unpack .../048-python3-numpy_1%3a1.24.2-2_arm64.deb ... 353s Unpacking python3-numpy (1:1.24.2-2) ... 354s Selecting previously unselected package python3-tk:arm64. 354s Preparing to unpack .../049-python3-tk_3.11.5-1_arm64.deb ... 354s Unpacking python3-tk:arm64 (3.11.5-1) ... 354s Selecting previously unselected package python3-pil.imagetk:arm64. 354s Preparing to unpack .../050-python3-pil.imagetk_10.2.0-1_arm64.deb ... 354s Unpacking python3-pil.imagetk:arm64 (10.2.0-1) ... 354s Selecting previously unselected package libgomp1:arm64. 354s Preparing to unpack .../051-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libimagequant0:arm64. 354s Preparing to unpack .../052-libimagequant0_2.18.0-1_arm64.deb ... 354s Unpacking libimagequant0:arm64 (2.18.0-1) ... 354s Selecting previously unselected package libjpeg-turbo8:arm64. 354s Preparing to unpack .../053-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 354s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 354s Selecting previously unselected package libjpeg8:arm64. 354s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_arm64.deb ... 354s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 354s Selecting previously unselected package liblcms2-2:arm64. 354s Preparing to unpack .../055-liblcms2-2_2.14-2_arm64.deb ... 354s Unpacking liblcms2-2:arm64 (2.14-2) ... 354s Selecting previously unselected package libopenjp2-7:arm64. 354s Preparing to unpack .../056-libopenjp2-7_2.5.0-2_arm64.deb ... 354s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 354s Selecting previously unselected package libgraphite2-3:arm64. 354s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ... 354s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 354s Selecting previously unselected package libharfbuzz0b:arm64. 354s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_arm64.deb ... 354s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 354s Selecting previously unselected package libraqm0:arm64. 354s Preparing to unpack .../059-libraqm0_0.10.1-1_arm64.deb ... 354s Unpacking libraqm0:arm64 (0.10.1-1) ... 354s Selecting previously unselected package libdeflate0:arm64. 354s Preparing to unpack .../060-libdeflate0_1.19-1_arm64.deb ... 354s Unpacking libdeflate0:arm64 (1.19-1) ... 355s Selecting previously unselected package libjbig0:arm64. 355s Preparing to unpack .../061-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 355s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 355s Selecting previously unselected package liblerc4:arm64. 355s Preparing to unpack .../062-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 355s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 355s Selecting previously unselected package libsharpyuv0:arm64. 355s Preparing to unpack .../063-libsharpyuv0_1.3.2-0.4_arm64.deb ... 355s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 355s Selecting previously unselected package libwebp7:arm64. 355s Preparing to unpack .../064-libwebp7_1.3.2-0.4_arm64.deb ... 355s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 355s Selecting previously unselected package libtiff6:arm64. 355s Preparing to unpack .../065-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 355s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 355s Selecting previously unselected package libwebpdemux2:arm64. 355s Preparing to unpack .../066-libwebpdemux2_1.3.2-0.4_arm64.deb ... 355s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ... 355s Selecting previously unselected package libwebpmux3:arm64. 355s Preparing to unpack .../067-libwebpmux3_1.3.2-0.4_arm64.deb ... 355s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ... 355s Selecting previously unselected package python3-pil:arm64. 355s Preparing to unpack .../068-python3-pil_10.2.0-1_arm64.deb ... 355s Unpacking python3-pil:arm64 (10.2.0-1) ... 355s Selecting previously unselected package libpixman-1-0:arm64. 355s Preparing to unpack .../069-libpixman-1-0_0.42.2-1_arm64.deb ... 355s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 355s Selecting previously unselected package libxcb-render0:arm64. 355s Preparing to unpack .../070-libxcb-render0_1.15-1_arm64.deb ... 355s Unpacking libxcb-render0:arm64 (1.15-1) ... 355s Selecting previously unselected package libxcb-shm0:arm64. 355s Preparing to unpack .../071-libxcb-shm0_1.15-1_arm64.deb ... 355s Unpacking libxcb-shm0:arm64 (1.15-1) ... 355s Selecting previously unselected package libcairo2:arm64. 355s Preparing to unpack .../072-libcairo2_1.18.0-1_arm64.deb ... 355s Unpacking libcairo2:arm64 (1.18.0-1) ... 355s Selecting previously unselected package python3-cairo. 355s Preparing to unpack .../073-python3-cairo_1.25.1-2_arm64.deb ... 355s Unpacking python3-cairo (1.25.1-2) ... 356s Selecting previously unselected package python3-freetype. 356s Preparing to unpack .../074-python3-freetype_2.4.0-1_all.deb ... 356s Unpacking python3-freetype (2.4.0-1) ... 356s Selecting previously unselected package python3-rlpycairo. 356s Preparing to unpack .../075-python3-rlpycairo_0.3.0-3_all.deb ... 356s Unpacking python3-rlpycairo (0.3.0-3) ... 356s Selecting previously unselected package fonts-dejavu-extra. 356s Preparing to unpack .../076-fonts-dejavu-extra_2.37-8_all.deb ... 356s Unpacking fonts-dejavu-extra (2.37-8) ... 356s Selecting previously unselected package python3-reportlab. 356s Preparing to unpack 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previously unselected package fonts-lyx. 357s Preparing to unpack .../083-fonts-lyx_2.4.0~RC3-1_all.deb ... 357s Unpacking fonts-lyx (2.4.0~RC3-1) ... 357s Selecting previously unselected package python-matplotlib-data. 357s Preparing to unpack .../084-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 357s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 358s Selecting previously unselected package python3-dateutil. 358s Preparing to unpack .../085-python3-dateutil_2.8.2-3_all.deb ... 358s Unpacking python3-dateutil (2.8.2-3) ... 358s Selecting previously unselected package python3-contourpy. 358s Preparing to unpack .../086-python3-contourpy_1.0.7-1build2_arm64.deb ... 358s Unpacking python3-contourpy (1.0.7-1build2) ... 358s Selecting previously unselected package python3-cycler. 358s Preparing to unpack .../087-python3-cycler_0.11.0-2_all.deb ... 358s Unpacking python3-cycler (0.11.0-2) ... 358s Selecting previously unselected package python3-brotli. 358s Preparing to unpack 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Selecting previously unselected package python3-sympy. 360s Preparing to unpack .../094-python3-sympy_1.12-7_all.deb ... 360s Unpacking python3-sympy (1.12-7) ... 361s Selecting previously unselected package python3-appdirs. 361s Preparing to unpack .../095-python3-appdirs_1.4.4-4_all.deb ... 361s Unpacking python3-appdirs (1.4.4-4) ... 361s Selecting previously unselected package python3-fs. 361s Preparing to unpack .../096-python3-fs_2.4.16-3_all.deb ... 361s Unpacking python3-fs (2.4.16-3) ... 361s Selecting previously unselected package libxslt1.1:arm64. 361s Preparing to unpack .../097-libxslt1.1_1.1.39-0exp1_arm64.deb ... 361s Unpacking libxslt1.1:arm64 (1.1.39-0exp1) ... 361s Selecting previously unselected package python3-lxml:arm64. 361s Preparing to unpack .../098-python3-lxml_5.1.0-1_arm64.deb ... 361s Unpacking python3-lxml:arm64 (5.1.0-1) ... 361s Selecting previously unselected package python3-lz4. 361s Preparing to unpack .../099-python3-lz4_4.0.2+dfsg-1build2_arm64.deb ... 361s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 362s Selecting previously unselected package python3-unicodedata2. 362s Preparing to unpack .../100-python3-unicodedata2_15.1.0+ds-1_arm64.deb ... 362s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 362s Selecting previously unselected package unicode-data. 362s Preparing to unpack .../101-unicode-data_15.1.0-1_all.deb ... 362s Unpacking unicode-data (15.1.0-1) ... 362s Selecting previously unselected package python3-fonttools. 362s Preparing to unpack .../102-python3-fonttools_4.46.0-1_arm64.deb ... 362s Unpacking python3-fonttools (4.46.0-1) ... 363s Selecting previously unselected package python3-kiwisolver. 363s Preparing to unpack .../103-python3-kiwisolver_1.4.4-2_arm64.deb ... 363s Unpacking python3-kiwisolver (1.4.4-2) ... 363s Selecting previously unselected package python3-packaging. 363s Preparing to unpack .../104-python3-packaging_23.2-1_all.deb ... 363s Unpacking python3-packaging (23.2-1) ... 363s Selecting previously unselected package libqhull-r8.0:arm64. 363s Preparing to unpack .../105-libqhull-r8.0_2020.2-6_arm64.deb ... 363s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 363s Selecting previously unselected package python3-matplotlib. 363s Preparing to unpack .../106-python3-matplotlib_3.6.3-1ubuntu3_arm64.deb ... 363s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 363s Selecting previously unselected package python3-pandas-lib:arm64. 363s Preparing to unpack .../107-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_arm64.deb ... 363s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 364s Selecting previously unselected package python3-pandas. 364s Preparing to unpack .../108-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 364s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 365s Selecting previously unselected package python3-joblib. 365s Preparing to unpack .../109-python3-joblib_1.3.2-1_all.deb ... 365s Unpacking python3-joblib (1.3.2-1) ... 365s Selecting previously unselected package python3-networkx. 365s Preparing to unpack .../110-python3-networkx_2.8.8-1ubuntu1_all.deb ... 365s Unpacking python3-networkx (2.8.8-1ubuntu1) ... 365s Selecting previously unselected package python3-pomegranate. 365s Preparing to unpack .../111-python3-pomegranate_0.14.8-4_arm64.deb ... 365s Unpacking python3-pomegranate (0.14.8-4) ... 366s Selecting previously unselected package python3-more-itertools. 366s Preparing to unpack .../112-python3-more-itertools_10.2.0-1_all.deb ... 366s Unpacking python3-more-itertools (10.2.0-1) ... 366s Selecting previously unselected package python3-zipp. 366s Preparing to unpack .../113-python3-zipp_1.0.0-6_all.deb ... 366s Unpacking python3-zipp (1.0.0-6) ... 366s Selecting previously unselected package python3-importlib-metadata. 366s Preparing to unpack .../114-python3-importlib-metadata_4.12.0-1_all.deb ... 366s Unpacking python3-importlib-metadata (4.12.0-1) ... 366s Selecting previously unselected package python3-pyfaidx. 366s Preparing to unpack .../115-python3-pyfaidx_0.8.1.1-1_all.deb ... 366s Unpacking python3-pyfaidx (0.8.1.1-1) ... 366s Selecting previously unselected package libhtscodecs2:arm64. 366s Preparing to unpack .../116-libhtscodecs2_1.6.0-1_arm64.deb ... 366s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 366s Selecting previously unselected package libhts3:arm64. 366s Preparing to unpack .../117-libhts3_1.18+ds-1_arm64.deb ... 366s Unpacking libhts3:arm64 (1.18+ds-1) ... 366s Selecting previously unselected package python3-pysam. 366s Preparing to unpack .../118-python3-pysam_0.22.0+ds-1_arm64.deb ... 366s Unpacking python3-pysam (0.22.0+ds-1) ... 367s Selecting previously unselected package python3-threadpoolctl. 367s Preparing to unpack .../119-python3-threadpoolctl_3.1.0-1_all.deb ... 367s Unpacking python3-threadpoolctl (3.1.0-1) ... 367s Selecting previously unselected package python3-sklearn-lib:arm64. 367s Preparing to unpack .../120-python3-sklearn-lib_1.4.1.post1+dfsg-1_arm64.deb 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.../126-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 369s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 369s Selecting previously unselected package fontconfig. 369s Preparing to unpack .../127-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 369s Unpacking fontconfig (2.15.0-1ubuntu1) ... 369s Selecting previously unselected package libthai-data. 369s Preparing to unpack .../128-libthai-data_0.1.29-2_all.deb ... 369s Unpacking libthai-data (0.1.29-2) ... 369s Selecting previously unselected package libdatrie1:arm64. 369s Preparing to unpack .../129-libdatrie1_0.2.13-3_arm64.deb ... 369s Unpacking libdatrie1:arm64 (0.2.13-3) ... 369s Selecting previously unselected package libthai0:arm64. 369s Preparing to unpack .../130-libthai0_0.1.29-2_arm64.deb ... 369s Unpacking libthai0:arm64 (0.1.29-2) ... 369s Selecting previously unselected package libpango-1.0-0:arm64. 369s Preparing to unpack .../131-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 369s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 369s Selecting previously unselected package libpangoft2-1.0-0:arm64. 369s Preparing to unpack .../132-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 369s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 369s Selecting previously unselected package libpangocairo-1.0-0:arm64. 369s Preparing to unpack .../133-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 369s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 369s Selecting previously unselected package libice6:arm64. 369s Preparing to unpack .../134-libice6_2%3a1.0.10-1build2_arm64.deb ... 369s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 369s Selecting previously unselected package libsm6:arm64. 369s Preparing to unpack .../135-libsm6_2%3a1.2.3-1build2_arm64.deb ... 369s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 369s Selecting previously unselected package libxt6:arm64. 369s Preparing to unpack .../136-libxt6_1%3a1.2.1-1.1_arm64.deb ... 369s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 369s Selecting previously unselected package r-base-core. 369s Preparing to unpack .../137-r-base-core_4.3.2-1build1_arm64.deb ... 369s Unpacking r-base-core (4.3.2-1build1) ... 370s Selecting previously unselected package r-bioc-biocgenerics. 370s Preparing to unpack .../138-r-bioc-biocgenerics_0.48.1-2_all.deb ... 370s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 371s Selecting previously unselected package r-bioc-dnacopy. 371s Preparing to unpack .../139-r-bioc-dnacopy_1.76.0-1_arm64.deb ... 371s Unpacking r-bioc-dnacopy (1.76.0-1) ... 371s Selecting previously unselected package cnvkit. 371s Preparing to unpack .../140-cnvkit_0.9.10-1_arm64.deb ... 371s Unpacking cnvkit (0.9.10-1) ... 372s Selecting previously unselected package python3-xopen. 372s Preparing to unpack .../141-python3-xopen_1.7.0-2_all.deb ... 372s Unpacking python3-xopen (1.7.0-2) ... 372s Selecting previously unselected package python3-dnaio. 372s Preparing to unpack .../142-python3-dnaio_1.0.1-1build1_arm64.deb ... 372s Unpacking python3-dnaio (1.0.1-1build1) ... 372s Selecting previously unselected package python3-cutadapt. 372s Preparing to unpack .../143-python3-cutadapt_4.4-1build1_arm64.deb ... 372s Unpacking python3-cutadapt (4.4-1build1) ... 372s Selecting previously unselected package cutadapt. 372s Preparing to unpack .../144-cutadapt_4.4-1build1_all.deb ... 372s Unpacking cutadapt (4.4-1build1) ... 372s Selecting previously unselected package diamond-aligner. 372s Preparing to unpack .../145-diamond-aligner_2.1.9-1_arm64.deb ... 372s Unpacking diamond-aligner (2.1.9-1) ... 372s Selecting previously unselected package emboss-data. 372s Preparing to unpack .../146-emboss-data_6.6.0+dfsg-12ubuntu1_all.deb ... 372s Unpacking emboss-data (6.6.0+dfsg-12ubuntu1) ... 384s Selecting previously unselected package emboss-test. 384s Preparing to unpack .../147-emboss-test_6.6.0+dfsg-12ubuntu1_all.deb ... 384s Unpacking emboss-test (6.6.0+dfsg-12ubuntu1) ... 385s Selecting previously unselected package libxpm4:arm64. 385s Preparing to unpack .../148-libxpm4_1%3a3.5.17-1_arm64.deb ... 385s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 385s Selecting previously unselected package libgd3:arm64. 385s Preparing to unpack .../149-libgd3_2.3.3-9ubuntu1_arm64.deb ... 385s Unpacking libgd3:arm64 (2.3.3-9ubuntu1) ... 385s Selecting previously unselected package libgd-perl. 385s Preparing to unpack .../150-libgd-perl_2.78-1build1_arm64.deb ... 385s Unpacking libgd-perl (2.78-1build1) ... 385s Selecting previously unselected package libdevel-symdump-perl. 385s Preparing to unpack .../151-libdevel-symdump-perl_2.18-5_all.deb ... 385s Unpacking libdevel-symdump-perl (2.18-5) ... 385s Selecting previously unselected package liburi-perl. 385s Preparing to unpack .../152-liburi-perl_5.27-1_all.deb ... 385s Unpacking liburi-perl (5.27-1) ... 385s Selecting previously unselected package libencode-locale-perl. 385s Preparing to unpack .../153-libencode-locale-perl_1.05-3_all.deb ... 385s Unpacking libencode-locale-perl (1.05-3) ... 385s Selecting previously unselected package libtimedate-perl. 385s Preparing to unpack .../154-libtimedate-perl_2.3300-2_all.deb ... 385s Unpacking libtimedate-perl (2.3300-2) ... 385s Selecting previously unselected package libhttp-date-perl. 385s Preparing to unpack .../155-libhttp-date-perl_6.06-1_all.deb ... 385s Unpacking libhttp-date-perl (6.06-1) ... 385s Selecting previously unselected package libfile-listing-perl. 385s Preparing to unpack .../156-libfile-listing-perl_6.16-1_all.deb ... 385s Unpacking libfile-listing-perl (6.16-1) ... 385s Selecting previously unselected package libhtml-tagset-perl. 385s Preparing to unpack .../157-libhtml-tagset-perl_3.20-6_all.deb ... 385s Unpacking libhtml-tagset-perl (3.20-6) ... 385s Selecting previously unselected package libhtml-parser-perl:arm64. 385s Preparing to unpack .../158-libhtml-parser-perl_3.81-1build1_arm64.deb ... 385s Unpacking libhtml-parser-perl:arm64 (3.81-1build1) ... 386s Selecting previously unselected package libhtml-tree-perl. 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.../164-libhttp-cookies-perl_6.11-1_all.deb ... 386s Unpacking libhttp-cookies-perl (6.11-1) ... 386s Selecting previously unselected package libhttp-negotiate-perl. 386s Preparing to unpack .../165-libhttp-negotiate-perl_6.01-2_all.deb ... 386s Unpacking libhttp-negotiate-perl (6.01-2) ... 386s Selecting previously unselected package perl-openssl-defaults:arm64. 386s Preparing to unpack .../166-perl-openssl-defaults_7_arm64.deb ... 386s Unpacking perl-openssl-defaults:arm64 (7) ... 386s Selecting previously unselected package libnet-ssleay-perl:arm64. 386s Preparing to unpack .../167-libnet-ssleay-perl_1.94-1_arm64.deb ... 386s Unpacking libnet-ssleay-perl:arm64 (1.94-1) ... 386s Selecting previously unselected package libio-socket-ssl-perl. 386s Preparing to unpack .../168-libio-socket-ssl-perl_2.085-1_all.deb ... 386s Unpacking libio-socket-ssl-perl (2.085-1) ... 386s Selecting previously unselected package libnet-http-perl. 386s Preparing to unpack .../169-libnet-http-perl_6.23-1_all.deb ... 386s Unpacking libnet-http-perl (6.23-1) ... 386s Selecting previously unselected package liblwp-protocol-https-perl. 386s Preparing to unpack .../170-liblwp-protocol-https-perl_6.13-1_all.deb ... 386s Unpacking liblwp-protocol-https-perl (6.13-1) ... 386s Selecting previously unselected package libtry-tiny-perl. 387s Preparing to unpack .../171-libtry-tiny-perl_0.31-2_all.deb ... 387s Unpacking libtry-tiny-perl (0.31-2) ... 387s Selecting previously unselected package libwww-robotrules-perl. 387s Preparing to unpack .../172-libwww-robotrules-perl_6.02-1_all.deb ... 387s Unpacking libwww-robotrules-perl (6.02-1) ... 387s Selecting previously unselected package libwww-perl. 387s Preparing to unpack .../173-libwww-perl_6.76-1_all.deb ... 387s Unpacking libwww-perl (6.76-1) ... 387s Selecting previously unselected package libapache2-mod-perl2. 387s Preparing to unpack .../174-libapache2-mod-perl2_2.0.13-1build1_arm64.deb ... 387s Unpacking libapache2-mod-perl2 (2.0.13-1build1) ... 387s Selecting previously unselected package libdbi-perl:arm64. 387s Preparing to unpack .../175-libdbi-perl_1.643-4build1_arm64.deb ... 387s Unpacking libdbi-perl:arm64 (1.643-4build1) ... 387s Selecting previously unselected package libapache-dbi-perl. 387s Preparing to unpack .../176-libapache-dbi-perl_1.12-3_all.deb ... 387s Unpacking libapache-dbi-perl (1.12-3) ... 387s Selecting previously unselected package libbio-db-biofetch-perl. 387s Preparing to unpack .../177-libbio-db-biofetch-perl_1.7.3-4_all.deb ... 387s Unpacking libbio-db-biofetch-perl (1.7.3-4) ... 387s Selecting previously unselected package libcgi-pm-perl. 387s Preparing to unpack .../178-libcgi-pm-perl_4.62-1_all.deb ... 387s Unpacking libcgi-pm-perl (4.62-1) ... 387s Selecting previously unselected package libbio-db-gff-perl. 387s Preparing to unpack .../179-libbio-db-gff-perl_1.7.4-1_all.deb ... 387s Unpacking libbio-db-gff-perl (1.7.4-1) ... 387s Selecting previously unselected package libpq5:arm64. 388s Preparing to unpack .../180-libpq5_16.2-1_arm64.deb ... 388s Unpacking libpq5:arm64 (16.2-1) ... 388s Selecting previously unselected package libdbd-pg-perl. 388s Preparing to unpack .../181-libdbd-pg-perl_3.18.0-1build1_arm64.deb ... 388s Unpacking libdbd-pg-perl (3.18.0-1build1) ... 388s Selecting previously unselected package libdbd-sqlite3-perl:arm64. 388s Preparing to unpack .../182-libdbd-sqlite3-perl_1.74-1build1_arm64.deb ... 388s Unpacking libdbd-sqlite3-perl:arm64 (1.74-1build1) ... 388s Selecting previously unselected package libbio-db-seqfeature-perl. 388s Preparing to unpack .../183-libbio-db-seqfeature-perl_1.7.4-2_all.deb ... 388s Unpacking libbio-db-seqfeature-perl (1.7.4-2) ... 388s Selecting previously unselected package libbio-graphics-perl. 388s Preparing to unpack .../184-libbio-graphics-perl_2.40-6_all.deb ... 388s Unpacking libbio-graphics-perl (2.40-6) ... 388s Selecting previously unselected package libbio-coordinate-perl. 388s Preparing to unpack .../185-libbio-coordinate-perl_1.7.1-4_all.deb ... 388s Unpacking libbio-coordinate-perl (1.7.1-4) ... 388s Selecting previously unselected package libcgi-session-perl. 388s Preparing to unpack .../186-libcgi-session-perl_4.48-4_all.deb ... 388s Unpacking libcgi-session-perl (4.48-4) ... 388s Selecting previously unselected package libjson-perl. 388s Preparing to unpack .../187-libjson-perl_4.10000-1_all.deb ... 388s Unpacking libjson-perl (4.10000-1) ... 388s Selecting previously unselected package libexporter-tiny-perl. 388s Preparing to unpack .../188-libexporter-tiny-perl_1.006002-1_all.deb ... 388s Unpacking libexporter-tiny-perl (1.006002-1) ... 388s Selecting previously unselected package liblist-moreutils-xs-perl. 388s Preparing to unpack .../189-liblist-moreutils-xs-perl_0.430-3build3_arm64.deb ... 388s Unpacking liblist-moreutils-xs-perl (0.430-3build3) ... 388s Selecting previously unselected package liblist-moreutils-perl. 389s Preparing to unpack .../190-liblist-moreutils-perl_0.430-2_all.deb ... 389s Unpacking liblist-moreutils-perl (0.430-2) ... 389s Selecting previously unselected package libstatistics-descriptive-perl. 389s Preparing to unpack .../191-libstatistics-descriptive-perl_3.0801-1_all.deb ... 389s Unpacking libstatistics-descriptive-perl (3.0801-1) ... 389s Selecting previously unselected package libhttp-daemon-perl. 389s Preparing to unpack .../192-libhttp-daemon-perl_6.16-1_all.deb ... 389s Unpacking libhttp-daemon-perl (6.16-1) ... 389s Selecting previously unselected package libterm-readkey-perl. 389s Preparing to unpack .../193-libterm-readkey-perl_2.38-2build2_arm64.deb ... 389s Unpacking libterm-readkey-perl (2.38-2build2) ... 389s Selecting previously unselected package sqlite3. 389s Preparing to unpack .../194-sqlite3_3.45.1-1_arm64.deb ... 389s Unpacking sqlite3 (3.45.1-1) ... 389s Selecting previously unselected package libjs-prototype. 389s Preparing to unpack .../195-libjs-prototype_1.7.3-1_all.deb ... 389s Unpacking libjs-prototype (1.7.3-1) ... 389s Selecting previously unselected package libjs-scriptaculous. 389s Preparing to unpack .../196-libjs-scriptaculous_1.9.0-3_all.deb ... 389s Unpacking libjs-scriptaculous (1.9.0-3) ... 389s Selecting previously unselected package libanyevent-perl. 389s Preparing to unpack .../197-libanyevent-perl_7.170-2build4_arm64.deb ... 389s Unpacking libanyevent-perl (7.170-2build4) ... 389s Selecting previously unselected package libanyevent-cachedns-perl. 389s Preparing to unpack .../198-libanyevent-cachedns-perl_0.08-3_all.deb ... 389s Unpacking libanyevent-cachedns-perl (0.08-3) ... 389s Selecting previously unselected package libcommon-sense-perl:arm64. 389s Preparing to unpack .../199-libcommon-sense-perl_3.75-3build1_arm64.deb ... 389s Unpacking libcommon-sense-perl:arm64 (3.75-3build1) ... 389s Selecting previously unselected package libanyevent-http-perl. 389s Preparing to unpack .../200-libanyevent-http-perl_2.25-2_all.deb ... 389s Unpacking libanyevent-http-perl (2.25-2) ... 389s Selecting previously unselected package libstring-approx-perl. 389s Preparing to unpack .../201-libstring-approx-perl_3.28-2build2_arm64.deb ... 389s Unpacking libstring-approx-perl (3.28-2build2) ... 389s Selecting previously unselected package libxml-namespacesupport-perl. 389s Preparing to unpack .../202-libxml-namespacesupport-perl_1.12-2_all.deb ... 389s Unpacking libxml-namespacesupport-perl (1.12-2) ... 390s Selecting previously unselected package libxml-sax-base-perl. 390s Preparing to unpack .../203-libxml-sax-base-perl_1.09-3_all.deb ... 390s Unpacking libxml-sax-base-perl (1.09-3) ... 390s Selecting previously unselected package libxml-sax-perl. 390s Preparing to unpack .../204-libxml-sax-perl_1.02+dfsg-3_all.deb ... 390s Unpacking libxml-sax-perl (1.02+dfsg-3) ... 390s Selecting previously unselected package libxml-libxml-perl. 390s Preparing to unpack .../205-libxml-libxml-perl_2.0207+dfsg+really+2.0134-1build2_arm64.deb 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.../211-libgclib3_0.12.7+ds-5_arm64.deb ... 391s Unpacking libgclib3:arm64 (0.12.7+ds-5) ... 391s Selecting previously unselected package gffread. 391s Preparing to unpack .../212-gffread_0.12.7-4_arm64.deb ... 391s Unpacking gffread (0.12.7-4) ... 391s Selecting previously unselected package htslib-test. 391s Preparing to unpack .../213-htslib-test_1.18+ds-1_all.deb ... 391s Unpacking htslib-test (1.18+ds-1) ... 391s Selecting previously unselected package liblua5.1-0:arm64. 391s Preparing to unpack .../214-liblua5.1-0_5.1.5-9_arm64.deb ... 391s Unpacking liblua5.1-0:arm64 (5.1.5-9) ... 391s Selecting previously unselected package libmbedcrypto7:arm64. 391s Preparing to unpack .../215-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 391s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 391s Selecting previously unselected package libmbedx509-1:arm64. 391s Preparing to unpack .../216-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 391s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 391s Selecting previously unselected package libmbedtls14:arm64. 391s Preparing to unpack .../217-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 391s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 392s Selecting previously unselected package libtre5:arm64. 392s Preparing to unpack .../218-libtre5_0.8.0-7_arm64.deb ... 392s Unpacking libtre5:arm64 (0.8.0-7) ... 392s Selecting previously unselected package ncbi-data. 392s Preparing to unpack .../219-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... 392s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... 392s Selecting previously unselected package ncbi-blast+. 392s Preparing to unpack .../220-ncbi-blast+_2.12.0+ds-4_arm64.deb ... 392s Unpacking ncbi-blast+ (2.12.0+ds-4) ... 393s Selecting previously unselected package bowtie2. 393s Preparing to unpack .../221-bowtie2_2.5.2-1_arm64.deb ... 393s Unpacking bowtie2 (2.5.2-1) ... 393s Selecting previously unselected package samtools. 393s Preparing to unpack .../222-samtools_1.19.2-1_arm64.deb ... 393s Unpacking samtools (1.19.2-1) ... 393s Selecting previously unselected package optimir. 393s Preparing to unpack .../223-optimir_1.2-1_all.deb ... 393s Unpacking optimir (1.2-1) ... 393s Selecting previously unselected package proteinortho. 393s Preparing to unpack .../224-proteinortho_6.3.1+dfsg-1_arm64.deb ... 393s Unpacking proteinortho (6.3.1+dfsg-1) ... 394s Selecting previously unselected package python3-argcomplete. 394s Preparing to unpack .../225-python3-argcomplete_3.1.4-1_all.deb ... 394s Unpacking python3-argcomplete (3.1.4-1) ... 394s Selecting previously unselected package python3-argh. 394s Preparing to unpack .../226-python3-argh_0.31.2-1_all.deb ... 394s Unpacking python3-argh (0.31.2-1) ... 394s Selecting previously unselected package python3-simplejson. 394s Preparing to unpack .../227-python3-simplejson_3.19.2-1build1_arm64.deb ... 394s Unpacking python3-simplejson (3.19.2-1build1) ... 394s Selecting previously unselected package python3-gffutils. 394s Preparing to unpack .../228-python3-gffutils_0.12-2_all.deb ... 394s Unpacking python3-gffutils (0.12-2) ... 394s Selecting previously unselected package python3-pybedtools. 394s Preparing to unpack .../229-python3-pybedtools_0.9.1-1_arm64.deb ... 394s Unpacking python3-pybedtools (0.9.1-1) ... 394s Selecting previously unselected package genometools-common. 394s Preparing to unpack .../230-genometools-common_1.6.5+ds-2_all.deb ... 394s Unpacking genometools-common (1.6.5+ds-2) ... 395s Selecting previously unselected package seqan-apps. 395s Preparing to unpack .../231-seqan-apps_2.4.0+dfsg-16_arm64.deb ... 395s Unpacking seqan-apps (2.4.0+dfsg-16) ... 395s Selecting previously unselected package autopkgtest-satdep. 395s Preparing to unpack .../232-1-autopkgtest-satdep.deb ... 395s Unpacking autopkgtest-satdep (0) ... 396s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 396s Setting up libanyevent-perl (7.170-2build4) ... 396s Setting up python3-more-itertools (10.2.0-1) ... 396s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 396s Setting up liblcms2-2:arm64 (2.14-2) ... 396s Setting up ncbi-data (6.1.20170106+dfsg1-10) ... 396s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 396s Setting up libstring-approx-perl (3.28-2build2) ... 396s Setting up python3-argh (0.31.2-1) ... 396s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 396s Setting up libpaper1:arm64 (1.1.29) ... 397s 397s Creating config file /etc/papersize with new version 397s Setting up gff2ps (0.98l-6) ... 397s Setting up libtre5:arm64 (0.8.0-7) ... 397s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 397s Setting up libxpm4:arm64 (1:3.5.17-1) ... 397s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 397s Setting up libdatrie1:arm64 (0.2.13-3) ... 397s Setting up libtest-deep-perl (1.204-1) ... 397s Setting up python3-joblib (1.3.2-1) ... 398s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 398s Setting up libxcb-render0:arm64 (1.15-1) ... 398s Setting up libclone-perl:arm64 (0.46-1build1) ... 398s Setting up libalgorithm-diff-perl (1.201-1) ... 398s Setting up htslib-test (1.18+ds-1) ... 398s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 398s Setting up fonts-lyx (2.4.0~RC3-1) ... 398s Setting up libhtml-tagset-perl (3.20-6) ... 398s Setting up unzip (6.0-28ubuntu3) ... 398s Setting up liblwp-mediatypes-perl (6.04-2) ... 398s Setting up python3-threadpoolctl (3.1.0-1) ... 398s Setting up x11-common (1:7.7+23ubuntu2) ... 399s Setting up libtry-tiny-perl (0.31-2) ... 399s Setting up libpq5:arm64 (16.2-1) ... 399s Setting up libdeflate0:arm64 (1.19-1) ... 399s Setting up libapr1:arm64 (1.7.2-3) ... 399s Setting up perl-openssl-defaults:arm64 (7) ... 399s Setting up libcommon-sense-perl:arm64 (3.75-3build1) ... 399s Setting up libxml-namespacesupport-perl (1.12-2) ... 399s Setting up libanyevent-http-perl (2.25-2) ... 399s Setting up libqhull-r8.0:arm64 (2020.2-6) ... 399s Setting up libencode-locale-perl (1.05-3) ... 399s Setting up libxcb-shm0:arm64 (1.15-1) ... 399s Setting up libpaper-utils (1.1.29) ... 399s Setting up python3-zipp (1.0.0-6) ... 400s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 400s Setting up python3-freetype (2.4.0-1) ... 400s Setting up emboss-data (6.6.0+dfsg-12ubuntu1) ... 400s Setting up python3-networkx (2.8.8-1ubuntu1) ... 403s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' 403s "graph [edge [ source u'u\4200' target u'u\4200' ] " 403s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' 403s + "node [ id u'u\4200' label b ] ]" 403s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 403s Setting up diamond-aligner (2.1.9-1) ... 403s Setting up bowtie2 (2.5.2-1) ... 403s Setting up augustus-doc (3.5.0+dfsg-4build1) ... 403s Setting up unicode-data (15.1.0-1) ... 403s Setting up python3-simplejson (3.19.2-1build1) ... 403s Setting up libxml-sax-base-perl (1.09-3) ... 403s Setting up libio-string-perl (1.08-4) ... 403s Setting up python3-decorator (5.1.1-5) ... 404s Setting up zip (3.0-13) ... 404s Setting up libfontenc1:arm64 (1:1.1.8-1) ... 404s Setting up libblas3:arm64 (3.12.0-3) ... 404s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 404s Setting up libclass-data-inheritable-perl (0.08-3) ... 404s Setting up python3-packaging (23.2-1) ... 404s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 404s Setting up libtext-diff-perl (1.45-2) ... 404s Setting up python3-brotli (1.1.0-2) ... 404s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 404s Setting up python3-cycler (0.11.0-2) ... 405s Setting up libanyevent-cachedns-perl (0.08-3) ... 405s Setting up libimagequant0:arm64 (2.18.0-1) ... 405s Setting up seqan-apps (2.4.0+dfsg-16) ... 405s Setting up fonts-dejavu-mono (2.37-8) ... 405s Setting up python3-kiwisolver (1.4.4-2) ... 405s Setting up libio-html-perl (1.004-3) ... 405s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 405s Setting up fonts-dejavu-core (2.37-8) ... 405s Setting up liblist-moreutils-xs-perl (0.430-3build3) ... 405s Setting up emboss-test (6.6.0+dfsg-12ubuntu1) ... 405s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 405s Setting up libjs-prototype (1.7.3-1) ... 405s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 405s Setting up libwebp7:arm64 (1.3.2-0.4) ... 405s Setting up libcapture-tiny-perl (0.48-2) ... 405s Setting up libtimedate-perl (2.3300-2) ... 405s Setting up fonts-dejavu-extra (2.37-8) ... 405s Setting up libdata-stag-perl (0.14-3) ... 405s Setting up pigz (2.8-1) ... 405s Setting up libjson-perl (4.10000-1) ... 405s Setting up liblua5.1-0:arm64 (5.1.5-9) ... 405s Setting up libxslt1.1:arm64 (1.1.39-0exp1) ... 405s Setting up libsub-uplevel-perl (0.2800-3) ... 405s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 405s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 405s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 405s Setting up libthai-data (0.1.29-2) ... 405s Setting up python3-dateutil (2.8.2-3) ... 406s Setting up sgml-base (1.31) ... 406s Setting up libdevel-stacktrace-perl (2.0500-1) ... 406s Setting up apache2-data (2.4.58-1ubuntu2) ... 406s Setting up libdevel-symdump-perl (2.18-5) ... 406s Setting up libbio-perl-perl (1.7.8-1) ... 406s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 406s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 406s Setting up bedtools-test (2.31.1+dfsg-2) ... 406s Setting up libexporter-tiny-perl (1.006002-1) ... 406s Setting up libterm-readkey-perl (2.38-2build2) ... 406s Setting up python3-mpmath (1.2.1-3) ... 407s Setting up python3-argcomplete (3.1.4-1) ... 407s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 407s Setting up libwebpmux3:arm64 (1.3.2-0.4) ... 407s Setting up gff2aplot (2.0-15) ... 407s Setting up python3-appdirs (1.4.4-4) ... 407s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 407s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 407s Setting up liburi-perl (5.27-1) ... 407s Setting up sqlite3 (3.45.1-1) ... 407s Setting up libdbi-perl:arm64 (1.643-4build1) ... 407s Setting up libgclib3:arm64 (0.12.7+ds-5) ... 407s Setting up libaprutil1:arm64 (1.6.3-1ubuntu1) ... 407s Setting up libnet-ssleay-perl:arm64 (1.94-1) ... 407s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 407s Setting up python3-sympy (1.12-7) ... 419s Setting up libice6:arm64 (2:1.0.10-1build2) ... 419s Setting up libhttp-date-perl (6.06-1) ... 419s Setting up liblapack3:arm64 (3.12.0-3) ... 419s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 419s Setting up libhts3:arm64 (1.18+ds-1) ... 419s Setting up gffread (0.12.7-4) ... 419s Setting up python3-pysam (0.22.0+ds-1) ... 420s Setting up libfile-listing-perl (6.16-1) ... 420s Setting up python3-importlib-metadata (4.12.0-1) ... 420s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 420s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 420s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 421s Setting up libjs-scriptaculous (1.9.0-3) ... 421s Setting up liblist-moreutils-perl (0.430-2) ... 421s Setting up libtest-warn-perl (0.37-2) ... 421s Setting up libwebpdemux2:arm64 (1.3.2-0.4) ... 421s Setting up libtest-differences-perl (0.71-1) ... 421s Setting up libnet-http-perl (6.23-1) ... 421s Setting up libdbd-pg-perl (3.18.0-1build1) ... 421s Setting up libexception-class-perl (1.45-1) ... 421s Setting up libaprutil1-ldap:arm64 (1.6.3-1ubuntu1) ... 421s Setting up xfonts-utils (1:7.7+6build2) ... 421s Setting up libaprutil1-dbd-sqlite3:arm64 (1.6.3-1ubuntu1) ... 421s Setting up libxml-sax-perl (1.02+dfsg-3) ... 421s update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... 421s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 421s 421s Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version 421s Setting up samtools (1.19.2-1) ... 421s Setting up python3-fs (2.4.16-3) ... 422s Setting up ncbi-blast+ (2.12.0+ds-4) ... 422s Setting up libthai0:arm64 (0.1.29-2) ... 422s Setting up python3-xopen (1.7.0-2) ... 422s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 422s Setting up libtest-exception-perl (0.43-3) ... 422s Setting up libraqm0:arm64 (0.10.1-1) ... 422s Setting up python3-numpy (1:1.24.2-2) ... 427s Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1build2) ... 427s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... 427s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... 427s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 427s Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version 428s Setting up libwww-robotrules-perl (6.02-1) ... 428s Setting up python3-lxml:arm64 (5.1.0-1) ... 428s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 428s Setting up xml-core (0.19) ... 428s Setting up libhtml-parser-perl:arm64 (3.81-1build1) ... 428s Setting up python3-contourpy (1.0.7-1build2) ... 429s Setting up libdbd-sqlite3-perl:arm64 (1.74-1build1) ... 429s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 429s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 429s Setting up proteinortho (6.3.1+dfsg-1) ... 429s Setting up libio-socket-ssl-perl (2.085-1) ... 429s Setting up python3-dnaio (1.0.1-1build1) ... 429s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 429s Setting up libhttp-message-perl (6.45-1ubuntu1) ... 429s Setting up apache2-utils (2.4.58-1ubuntu2) ... 429s Setting up python3-pyfaidx (0.8.1.1-1) ... 429s Setting up libhttp-negotiate-perl (6.01-2) ... 429s Setting up fontconfig (2.15.0-1ubuntu1) ... 432s Regenerating fonts cache... done. 432s Setting up python3-pybedtools (0.9.1-1) ... 433s Setting up libxft2:arm64 (2.3.6-1) ... 433s Setting up libstatistics-descriptive-perl (3.0801-1) ... 433s Setting up python3-scipy (1.11.4-6) ... 440s Setting up libhttp-cookies-perl (6.11-1) ... 440s Setting up libtest-most-perl (0.38-1) ... 440s Setting up libhtml-tree-perl (5.07-3) ... 440s Setting up python3-pomegranate (0.14.8-4) ... 440s Setting up libtk8.6:arm64 (8.6.14-1) ... 440s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 440s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 440s Setting up libcgi-pm-perl (4.62-1) ... 440s Setting up python3-sklearn-lib:arm64 (1.4.1.post1+dfsg-1) ... 440s Setting up fonts-urw-base35 (20200910-8) ... 440s Setting up apache2-bin (2.4.58-1ubuntu2) ... 440s Setting up libcairo2:arm64 (1.18.0-1) ... 440s Setting up python3-pil:arm64 (10.2.0-1) ... 441s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 451s Setting up python3-cutadapt (4.4-1build1) ... 451s Setting up libcgi-session-perl (4.48-4) ... 451s Setting up libgd3:arm64 (2.3.3-9ubuntu1) ... 451s Setting up python3-sklearn (1.4.1.post1+dfsg-1) ... 455s Setting up libxml-simple-perl (2.25-2) ... 455s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 455s Setting up libhttp-daemon-perl (6.16-1) ... 455s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 456s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 456s Setting up bioperl (1.7.8-1) ... 456s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 456s Setting up python3-cairo (1.25.1-2) ... 456s Setting up cutadapt (4.4-1build1) ... 456s Setting up apache2 (2.4.58-1ubuntu2) ... 456s Enabling module mpm_event. 456s Enabling module authz_core. 456s Enabling module authz_host. 456s Enabling module authn_core. 456s Enabling module auth_basic. 456s Enabling module access_compat. 456s Enabling module authn_file. 456s Enabling module authz_user. 457s Enabling module alias. 457s Enabling module dir. 457s Enabling module autoindex. 457s Enabling module env. 457s Enabling module mime. 457s Enabling module negotiation. 457s Enabling module setenvif. 457s Enabling module filter. 457s Enabling module deflate. 457s Enabling module status. 457s Enabling module reqtimeout. 457s Enabling conf charset. 458s Enabling conf localized-error-pages. 458s Enabling conf other-vhosts-access-log. 458s Enabling conf security. 458s Enabling conf serve-cgi-bin. 458s Enabling site 000-default. 460s Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /usr/lib/systemd/system/apache2.service. 461s Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /usr/lib/systemd/system/apache-htcacheclean.service. 464s Setting up blt (2.5.3+dfsg-7) ... 464s Setting up python3-tk:arm64 (3.11.5-1) ... 465s Setting up libbio-coordinate-perl (1.7.1-4) ... 465s Setting up libgd-perl (2.78-1build1) ... 465s Setting up python3-pil.imagetk:arm64 (10.2.0-1) ... 465s Setting up python3-rlpycairo (0.3.0-3) ... 466s Setting up r-base-core (4.3.2-1build1) ... 466s 466s Creating config file /etc/R/Renviron with new version 466s Setting up python3-reportlab (4.1.0-1) ... 468s Setting up genometools-common (1.6.5+ds-2) ... 468s Setting up r-bioc-biocgenerics (0.48.1-2) ... 468s Setting up r-bioc-dnacopy (1.76.0-1) ... 468s Setting up liblwp-protocol-https-perl (6.13-1) ... 468s Setting up libwww-perl (6.76-1) ... 468s Setting up python3-fonttools (4.46.0-1) ... 470s Setting up libapache2-mod-perl2 (2.0.13-1build1) ... 470s apache2_invoke: Enable module perl 470s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 471s Setting up libbio-db-biofetch-perl (1.7.3-4) ... 471s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 474s Setting up libvm-ec2-perl (1.28-4) ... 474s Setting up libapache-dbi-perl (1.12-3) ... 474s Setting up libbio-db-gff-perl (1.7.4-1) ... 474s Setting up libbio-db-seqfeature-perl (1.7.4-2) ... 474s Setting up libbio-graphics-perl (2.40-6) ... 474s Setting up gbrowse (2.56+dfsg-12build1) ... 476s apache2_invoke: Enable configuration gbrowse 476s Processing triggers for man-db (2.12.0-3) ... 479s Processing triggers for install-info (7.1-3) ... 479s Processing triggers for libc-bin (2.39-0ubuntu6) ... 479s Processing triggers for ufw (0.36.2-5) ... 479s Processing triggers for sgml-base (1.31) ... 479s Setting up w3c-sgml-lib (1.3-3) ... 544s Setting up python3-biopython (1.81+dfsg-3) ... 547s Setting up python3-gffutils (0.12-2) ... 547s Setting up cnvkit (0.9.10-1) ... 548s Setting up optimir (1.2-1) ... 548s /usr/lib/python3/dist-packages/optimir/libs/get_counts.py:453: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? 548s if prefix is '': 548s Setting up autopkgtest-satdep (0) ... 567s (Reading database ... 100106 files and directories currently installed.) 567s Removing autopkgtest-satdep (0) ... 567s autopkgtest [07:42:20]: test run-tests: [----------------------- 568s /usr/share/doc/augustus/tutorial/data/hints.rnaseq.intron.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/abinitio-browser.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/augustus-ppx.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/hints.est.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/hints.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/hints.rnaseq.ep.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/output-abinitio.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/output-browser.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/output.gff: is okay. 568s /usr/share/doc/augustus/tutorial/results/scipio.gff: is okay. 568s /usr/share/bedtools/test/fisher/tumor.gff: is okay. 568s /usr/share/bedtools/test/intersect/b.issue311.gff: is okay. 568s /usr/share/bedtools/test/intersect/gdc.gff: is okay. 568s /usr/share/bedtools/test/map/test.gff: is okay. 568s /usr/share/bedtools/test/merge/a.gff: is okay. 568s /usr/share/EMBOSS/data/Efeatures.gff2: is okay. 568s /usr/share/EMBOSS/data/Efeatures.gff3: is okay. 568s /usr/share/EMBOSS/data/Etags.gff2: is okay. 568s /usr/share/EMBOSS/data/Etags.gff3: is okay. 568s /usr/share/EMBOSS/test/data/bioperl.gff3: is okay. 568s /usr/share/EMBOSS/test/data/eden1.gff3: is okay. 568s /usr/share/EMBOSS/test/data/featexample1.gff3: is okay. 568s /usr/share/EMBOSS/test/data/gmod-align.gff3: Warning: unexpected tab character in last column, line truncated: 568s ctg123 est EST_match 1050 1500 . + . ID=Match1;Name=agt830.5;Target=agt830.5 1 451 568s Warning: unexpected tab character in last column, line truncated: 568s ctg123 est EST_match 3000 3202 . + . ID=Match1;Name=agt830.5;Target=agt830.5 452 654 568s Warning: unexpected tab character in last column, line truncated: 568s ctg123 est EST_match 5410 5500 . - . ID=Match2;Name=agt830.3;Target=agt830.3 505 595 568s Warning: unexpected tab character in last column, line truncated: 568s ctg123 est EST_match 7000 7503 . - . ID=Match2;Name=agt830.3;Target=agt830.3 1 504 568s Warning: unexpected tab character in last column, line truncated: 568s ctg123 est EST_match 1050 1500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 1 451 568s Warning: unexpected tab character in last column, line truncated: 568s ctg123 est EST_match 5000 5500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 452 952 568s Warning: unexpected tab character in last column, line truncated: 568s ctg123 est EST_match 7000 7300 . + . ID=Match3;Name=agt221.5;Target=agt221.5 953 1253 568s is okay. 568s /usr/share/EMBOSS/test/data/gmod-discontinuous.gff3: is okay. 568s /usr/share/EMBOSS/test/data/gmod-eden1.gff3: Warning: unexpected tab character in last column, line truncated: 568s ctg123 example gene 1050 9000 . + . ID=EDEN;Name=EDEN;Note=protein kinase 568s is okay. 568s /usr/share/EMBOSS/test/data/gmod-sonic1.gff3: is okay. 568s /usr/share/EMBOSS/test/data/gmod-sonic2.gff3: is okay. 568s /usr/share/EMBOSS/test/data/gmod-sonic3.gff3: is okay. 568s /usr/share/EMBOSS/test/data/hba.gff: is okay. 568s /usr/share/EMBOSS/test/data/noid.gff: is okay. 568s /usr/share/EMBOSS/test/data/paamir.gff: is okay. 568s /usr/share/EMBOSS/test/data/paamir.gff3: is okay. 568s /usr/share/EMBOSS/test/data/seqexample.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes_simple.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff: Warning: unexpected tab character in last column, line truncated: 569s ctgA est HSP 7000 7300 . + . EST agt221.5 569s Warning: unexpected tab character in last column, line truncated: 569s ctgA est HSP 7000 7200 . + . EST agt767.5 569s is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff: is okay. 569s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff: is okay. 569s /usr/share/genometools/gtdata/doc/csa_example_consensus_spliced_alignments.gff3: is okay. 569s /usr/share/genometools/gtdata/doc/csa_example_spliced_alignments.gff3: is okay. 569s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sgp1.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/mhcregion/hs.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/mhcregion/mm.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs-mm.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.mm.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs-mm.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.mm.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs_utr.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm_utr.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/wublast/taf6.hs.gene.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/wublast/taf6.mm.gene.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff: Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641"; Start 11597; End 12218; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641"; Start 7067; End 7448; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641"; Start 5482; End 6065; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641"; Start 11198; End 11485; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641"; Start 8002; End 8402; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641"; Start 8902; End 9636; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641"; Start 10806; End 11009; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641"; Start 6393; End 6618; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641"; Start 5138; End 5426; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641"; Start 7444; End 7714; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641"; Start 5378; End 5504; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641"; Start 11954; End 12278; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641"; Start 6827; End 6924; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641"; Start 1490; End 1610; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641"; Start 10064; End 10180; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641"; Start 3564; End 3694; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641"; Start 3724; End 3837; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641"; Start 3416; End 3528; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641"; Start 2801; End 2860; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641"; Start 10323; End 10493; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641"; Start 8752; End 8825; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641"; Start 2194; End 2253; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641"; Start 1390; End 1461; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641"; Start 6007; End 6180; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641"; Start 9981; End 10063; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641"; Start 8633; End 8708; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641"; Start 10246; End 10311; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641"; Start 10244; End 10543; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641"; Start 913; End 994; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641"; Start 929; End 1212; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641"; Start 6612; End 6673; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641"; Start 6314; End 6364; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641"; Start 1748; End 1853; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641"; Start 10512; End 10581; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641"; Start 4552; End 4647; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641"; Start 1283; End 1342; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641"; Start 3670; End 3715; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641"; Start 605; End 791; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641"; Start 8525; End 8585; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641"; Start 9592; End 9647; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641"; Start 8839; End 8979; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641"; Start 1290; End 1523; Strand +; Frame .; 569s is okay. 569s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.gff: Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641" 11597 12218 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641" 7067 7448 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641" 5482 6065 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641" 11198 11485 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641" 8002 8402 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641" 8902 9636 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641" 10806 11009 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641" 6393 6618 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641" 5138 5426 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641" 7444 7714 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641" 5378 5504 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641" 11954 12278 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641" 6827 6924 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641" 1490 1610 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641" 10064 10180 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641" 3564 3694 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641" 3724 3837 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641" 3416 3528 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641" 2801 2860 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641" 10323 10493 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641" 8752 8825 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641" 2194 2253 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641" 1390 1461 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641" 6007 6180 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641" 9981 10063 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641" 8633 8708 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641" 10246 10311 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641" 10244 10543 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641" 913 994 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641" 929 1212 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641" 6612 6673 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641" 6314 6364 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641" 1748 1853 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641" 10512 10581 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641" 4552 4647 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641" 1283 1342 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641" 3670 3715 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641" 605 791 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641" 8525 8585 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641" 9592 9647 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641" 8839 8979 + .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641" 1290 1523 + .; 569s is okay. 569s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff: is okay. 569s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff: Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4867 5778 839 + . Target "NM_005641"; Start 11212; End 12162; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4874 5785 645 + . Target "NM_005641"; Start 11219; End 12151; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2379 2621 344 + . Target "NM_005641"; Start 8006; End 8248; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 673 1017 321 + . Target "NM_005641"; Start 5471; End 5833; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4519 4773 315 + . Target "NM_005641"; Start 10778; End 11065; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1719 1913 285 + . Target "NM_005641"; Start 7067; End 7261; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2 172 262 + . Target "NM_005641"; Start 5139; End 5309; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1212 1409 252 + . Target "NM_005641"; Start 6373; End 6564; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 762 1061 252 + . Target "NM_005641"; Start 5572; End 5880; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3432 3638 247 + . Target "NM_005641"; Start 9233; End 9439; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2378 2605 227 + . Target "NM_005641"; Start 8005; End 8232; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3140 3613 194 + . Target "NM_005641"; Start 8935; End 9414; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2116 2373 190 + . Target "NM_005641"; Start 7444; End 7698; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 6 173 188 + . Target "NM_005641"; Start 5143; End 5310; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 505 738 187 + . Target "NM_005641"; Start 5322; End 5579; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 7 174 184 + . Target "NM_005641"; Start 5144; End 5311; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1228 1458 178 + . Target "NM_005641"; Start 6368; End 6613; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1906 2100 159 + . Target "NM_005641"; Start 7265; End 7450; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1980 2348 159 + . Target "NM_005641"; Start 7329; End 7676; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1941 2126 136 + . Target "NM_005641"; Start 7288; End 7482; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1104 1226 135 + . Target "NM_005641"; Start 5927; End 6040; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5612 5878 94 + . Target "NM_005641"; Start 12030; End 12278; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2791 2877 73 + . Target "NM_005641"; Start 676; End 744; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3083 3175 71 + . Target "NM_005641"; Start 10044; End 10178; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2773 2880 71 + . Target "NM_005641"; Start 1278; End 1358; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 683 787 65 + . Target "NM_005641"; Start 3408; End 3518; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3503 3724 63 + . Target "NM_005641"; Start 11672; End 11920; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 405 464 61 + . Target "NM_005641"; Start 1930; End 1989; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2790 3026 61 + . Target "NM_005641"; Start 6614; End 6844; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4895 5158 60 + . Target "NM_005641"; Start 11942; End 12223; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4041 4097 60 + . Target "NM_005641"; Start 6339; End 6395; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2785 2850 59 + . Target "NM_005641"; Start 10005; End 10058; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 686 784 59 + . Target "NM_005641"; Start 6667; End 6771; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3121 3186 59 + . Target "NM_005641"; Start 6873; End 6935; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3028 3171 59 + . Target "NM_005641"; Start 3684; End 3836; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3123 3182 59 + . Target "NM_005641"; Start 2946; End 3005; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 304 519 55 + . Target "NM_005641"; Start 9309; End 9518; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4041 4100 54 + . Target "NM_005641"; Start 10281; End 10340; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4047 4109 54 + . Target "NM_005641"; Start 8664; End 8726; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3031 3174 53 + . Target "NM_005641"; Start 10322; End 10477; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 686 772 53 + . Target "NM_005641"; Start 3720; End 3812; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2770 2850 53 + . Target "NM_005641"; Start 6603; End 6668; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3136 3177 53 + . Target "NM_005641"; Start 1110; End 1151; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4579 4647 52 + . Target "NM_005641"; Start 8188; End 8256; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3028 3141 52 + . Target "NM_005641"; Start 685; End 810; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2804 2836 51 + . Target "NM_005641"; Start 8525; End 8557; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3095 3175 51 + . Target "NM_005641"; Start 10407; End 10478; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4002 4097 51 + . Target "NM_005641"; Start 4547; End 4645; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4166 4249 50 + . Target "NM_005641"; Start 7241; End 7333; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5536 5694 50 + . Target "NM_005641"; Start 11141; End 11311; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 555 608 50 + . Target "NM_005641"; Start 7342; End 7392; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 405 464 50 + . Target "NM_005641"; Start 7849; End 7908; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1447 1500 49 + . Target "NM_005641"; Start 6928; End 6978; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2916 3011 49 + . Target "NM_005641"; Start 10443; End 10541; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 931 1125 49 + . Target "NM_005641"; Start 5746; End 5943; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1501 1587 49 + . Target "NM_005641"; Start 7763; End 7849; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3028 3168 49 + . Target "NM_005641"; Start 1465; End 1587; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3121 3168 48 + . Target "NM_005641"; Start 6321; End 6365; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2792 2842 48 + . Target "NM_005641"; Start 3674; End 3715; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3083 3139 48 + . Target "NM_005641"; Start 4520; End 4585; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4029 4091 48 + . Target "NM_005641"; Start 2821; End 2880; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2913 2969 47 + . Target "NM_005641"; Start 8482; End 8538; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3118 3150 47 + . Target "NM_005641"; Start 10544; End 10576; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4047 4097 47 + . Target "NM_005641"; Start 8493; End 8543; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 689 784 47 + . Target "NM_005641"; Start 4665; End 4766; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3086 3115 47 + . Target "NM_005641"; Start 6827; End 6856; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3083 3121 47 + . Target "NM_005641"; Start 6654; End 6692; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3056 3211 47 + . Target "NM_005641"; Start 2989; End 3156; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3136 3168 46 + . Target "NM_005641"; Start 10275; End 10307; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 408 476 46 + . Target "NM_005641"; Start 1798; End 1866; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4888 4950 46 + . Target "NM_005641"; Start 10422; End 10484; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 546 590 46 + . Target "NM_005641"; Start 3051; End 3086; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2806 2844 46 + . Target "NM_005641"; Start 6047; End 6094; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5758 5823 46 + . Target "NM_005641"; Start 10842; End 10907; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2794 2871 46 + . Target "NM_005641"; Start 3670; End 3747; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3621 3713 46 + . Target "NM_005641"; Start 4612; End 4704; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1143 1187 45 + . Target "NM_005641"; Start 8580; End 8624; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3029 3121 45 + . Target "NM_005641"; Start 1299; End 1361; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4047 4091 45 + . Target "NM_005641"; Start 3813; End 3857; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4233 4304 45 + . Target "NM_005641"; Start 2166; End 2240; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4353 4457 45 + . Target "NM_005641"; Start 2071; End 2172; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3817 3882 44 + . Target "NM_005641"; Start 9908; End 9973; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3012 3152 44 + . Target "NM_005641"; Start 8506; End 8667; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3144 3176 44 + . Target "NM_005641"; Start 10447; End 10479; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5430 5534 44 + . Target "NM_005641"; Start 9313; End 9423; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4655 4735 44 + . Target "NM_005641"; Start 6495; End 6575; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3793 3849 44 + . Target "NM_005641"; Start 5563; End 5619; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3118 3165 44 + . Target "NM_005641"; Start 3610; End 3654; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3083 3166 44 + . Target "NM_005641"; Start 1017; End 1100; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5625 5684 44 + . Target "NM_005641"; Start 5493; End 5552; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3138 3176 43 + . Target "NM_005641"; Start 8788; End 8826; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3654 3728 43 + . Target "NM_005641"; Start 9429; End 9503; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 405 476 43 + . Target "NM_005641"; Start 4206; End 4277; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 856 978 43 + . Target "NM_005641"; Start 6448; End 6570; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1600 1629 43 + . Target "NM_005641"; Start 4298; End 4327; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5434 5481 43 + . Target "NM_005641"; Start 10718; End 10765; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3075 3125 43 + . Target "NM_005641"; Start 11897; End 11947; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2978 3019 43 + . Target "NM_005641"; Start 3874; End 3915; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4041 4091 43 + . Target "NM_005641"; Start 1561; End 1608; Strand +; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4866 5786 772 - . Target "NM_005641"; Start 11211; End 12152; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2258 2611 309 - . Target "NM_005641"; Start 7852; End 8238; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 762 1058 293 - . Target "NM_005641"; Start 55is okay. 569s 72; End 5877; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4518 4721 290 - . Target "NM_005641"; Start 10777; End 10992; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1718 1912 261 - . Target "NM_005641"; Start 7066; End 7260; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3392 3643 250 - . Target "NM_005641"; Start 9172; End 9441; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4 174 236 - . Target "NM_005641"; Start 5141; End 5311; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1259 1408 235 - . Target "NM_005641"; Start 6414; End 6563; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2116 2349 209 - . Target "NM_005641"; Start 7444; End 7677; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3 173 192 - . Target "NM_005641"; Start 5140; End 5310; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2 172 190 - . Target "NM_005641"; Start 5139; End 5309; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2112 2345 166 - . Target "NM_005641"; Start 7440; End 7673; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1998 2099 148 - . Target "NM_005641"; Start 7348; End 7449; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3291 3386 137 - . Target "NM_005641"; Start 9067; End 9162; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 554 769 135 - . Target "NM_005641"; Start 5386; End 5583; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1118 1225 125 - . Target "NM_005641"; Start 5941; End 6039; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5705 5878 83 - . Target "NM_005641"; Start 12081; End 12278; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5677 5877 76 - . Target "NM_005641"; Start 12065; End 12277; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3036 3185 73 - . Target "NM_005641"; Start 6791; End 6934; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3030 3167 67 - . Target "NM_005641"; Start 6242; End 6364; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 930 1091 66 - . Target "NM_005641"; Start 5745; End 5909; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3052 3177 65 - . Target "NM_005641"; Start 10013; End 10180; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4035 4103 65 - . Target "NM_005641"; Start 2824; End 2886; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2978 3142 64 - . Target "NM_005641"; Start 2639; End 2797; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3139 3177 61 - . Target "NM_005641"; Start 1113; End 1151; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3915 4103 60 - . Target "NM_005641"; Start 8367; End 8549; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2999 3148 60 - . Target "NM_005641"; Start 686; End 817; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3136 3180 59 - . Target "NM_005641"; Start 10439; End 10483; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3089 3190 58 - . Target "NM_005641"; Start 884; End 994; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 10281; End 10340; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2769 2870 57 - . Target "NM_005641"; Start 5032; End 5118; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 3807; End 3863; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3121 3177 56 - . Target "NM_005641"; Start 1405; End 1461; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 638 715 56 - . Target "NM_005641"; Start 10988; End 11065; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3115 3186 55 - . Target "NM_005641"; Start 6849; End 6935; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3089 3166 55 - . Target "NM_005641"; Start 4821; End 4907; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 399 542 54 - . Target "NM_005641"; Start 1789; End 1911; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2789 2944 54 - . Target "NM_005641"; Start 1282; End 1452; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3041 3163 54 - . Target "NM_005641"; Start 2112; End 2240; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 5574 5693 53 - . Target "NM_005641"; Start 11203; End 11310; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2728 3000 53 - . Target "NM_005641"; Start 4572; End 4838; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2986 3189 53 - . Target "NM_005641"; Start 3493; End 3678; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 399 503 53 - . Target "NM_005641"; Start 9591; End 9707; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 405 467 52 - . Target "NM_005641"; Start 1930; End 1992; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2785 3006 52 - . Target "NM_005641"; Start 2692; End 2925; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3142 3171 52 - . Target "NM_005641"; Start 3807; End 3836; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3139 3195 52 - . Target "NM_005641"; Start 1558; End 1614; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 224 295 51 - . Target "NM_005641"; Start 298; End 369; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2784 2855 51 - . Target "NM_005641"; Start 10004; End 10063; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2787 2855 51 - . Target "NM_005641"; Start 6611; End 6673; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3135 3176 51 - . Target "NM_005641"; Start 1109; End 1150; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3032 3148 50 - . Target "NM_005641"; Start 8535; End 8663; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3918 4088 50 - . Target "NM_005641"; Start 8541; End 8705; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3122 3190 50 - . Target "NM_005641"; Start 2945; End 3013; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3577 3663 50 - . Target "NM_005641"; Start 3545; End 3634; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2659 2865 49 - . Target "NM_005641"; Start 5924; End 6115; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3121 3171 49 - . Target "NM_005641"; Start 3480; End 3527; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3118 3171 49 - . Target "NM_005641"; Start 2809; End 2859; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 399 521 48 - . Target "NM_005641"; Start 4200; End 4301; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3135 3173 48 - . Target "NM_005641"; Start 10438; End 10476; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2905 3006 48 - . Target "NM_005641"; Start 6192; End 6299; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4020 4103 48 - . Target "NM_005641"; Start 2202; End 2279; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3139 3189 47 - . Target "NM_005641"; Start 10278; End 10328; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1973 2083 47 - . Target "NM_005641"; Start 1531; End 1635; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4043 4114 47 - . Target "NM_005641"; Start 3809; End 3883; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4227 4262 46 - . Target "NM_005641"; Start 10701; End 10736; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3142 3177 46 - . Target "NM_005641"; Start 8487; End 8522; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 10442; End 10495; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3577 3639 46 - . Target "NM_005641"; Start 10736; End 10804; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3077 3163 46 - . Target "NM_005641"; Start 6691; End 6771; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1179 1295 46 - . Target "NM_005641"; Start 7256; End 7369; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4040 4096 46 - . Target "NM_005641"; Start 6338; End 6394; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 3495; End 3548; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 903 1046 45 - . Target "NM_005641"; Start 41; End 181; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1882 1920 45 - . Target "NM_005641"; Start 9717; End 9755; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2138 2248 45 - . Target "NM_005641"; Start 207; End 329; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4556 4660 45 - . Target "NM_005641"; Start 6331; End 6435; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2802 2915 45 - . Target "NM_005641"; Start 3675; End 3797; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4041 4067 45 - . Target "NM_005641"; Start 812; End 838; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3104 3148 44 - . Target "NM_005641"; Start 10530; End 10574; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 949 984 44 - . Target "NM_005641"; Start 6325; End 6360; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 2110 2166 44 - . Target "NM_005641"; Start 12002; End 12058; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4348 4377 44 - . Target "NM_005641"; Start 2060; End 2089; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3140 3181 43 - . Target "NM_005641"; Start 8790; End 8831; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4529 4606 43 - . Target "NM_005641"; Start 10185; End 10262; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 1189 1383 43 - . Target "NM_005641"; Start 6370; End 6537; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3119 3193 43 - . Target "NM_005641"; Start 4864; End 4938; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 3120 3167 43 - . Target "NM_005641"; Start 1542; End 1586; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 632 706 43 - . Target "NM_005641"; Start 9145; End 9219; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4355 4378 43 - . Target "NM_005641"; Start 2069; End 2092; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4352 4402 43 - . Target "NM_005641"; Start 2070; End 2120; Strand -; Frame .; 569s Warning: unexpected tab character in last column, line truncated: 569s NM_009315 TBLASTX hsp 4639 4668 43 - . Target "NM_005641"; Start 3306; End 3335; Strand -; Frame .; 569s /usr/share/doc/gff2ps/test-data/Hsap_BTK_annotation.gff: Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 1728 1787 0.09 - 0 gene_1 # AA 212:231 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 2506 2618 2.93 - 2 gene_1 # AA 174:211 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 4112 4225 0.50 - 2 gene_1 # AA 136:174 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 8833 8959 -0.24 - 0 gene_1 # AA 94:136 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 9956 10089 1.98 - 2 gene_1 # AA 49: 93 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 13081 13159 0.13 - 0 gene_1 # AA 23: 49 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 First 13984 14049 -0.61 - 0 gene_1 # AA 1: 22 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Terminal 17520 17785 4.22 - 2 gene_2 # AA 86:174 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 First 19296 19551 14.31 - 0 gene_2 # AA 1: 86 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Terminal 76391 76462 1.12 - 0 gene_3 # AA 636:659 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 79700 79857 1.52 - 2 gene_3 # AA 583:635 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 80376 80494 0.93 - 1 gene_3 # AA 543:583 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 81136 81200 0.46 - 0 gene_3 # AA 522:543 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 82558 82774 5.08 - 1 gene_3 # AA 449:521 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 83290 83533 4.90 - 2 gene_3 # AA 368:449 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 84816 84943 0.10 - 1 gene_3 # AA 325:368 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 85123 85202 1.44 - 0 gene_3 # AA 299:325 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 85799 85853 0.18 - 1 gene_3 # AA 280:298 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 86594 86656 1.66 - 1 gene_3 # AA 259:280 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 87074 87261 4.48 - 0 gene_3 # AA 197:259 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 88679 88746 -0.20 - 2 gene_3 # AA 174:196 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 89067 89195 2.37 - 2 gene_3 # AA 131:174 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 96504 96585 -1.14 - 0 gene_3 # AA 104:131 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 98139 98207 2.20 - 0 gene_3 # AA 81:103 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 101042 101140 1.03 - 0 gene_3 # AA 48: 80 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 First 101650 101790 2.04 - 0 gene_3 # AA 1: 47 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 First 117154 117294 -1.72 + 0 gene_4 # AA 1: 47 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 117965 118070 4.71 + 0 gene_4 # AA 48: 83 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 118261 118328 1.96 + 2 gene_4 # AA 83:105 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Terminal 122234 122254 -1.95 + 0 gene_4 # AA 106:112 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Terminal 124315 124605 1.49 - 0 gene_5 # AA 321:417 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 124876 125073 4.19 - 0 gene_5 # AA 255:320 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 125291 125452 1.81 - 0 gene_5 # AA 201:254 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 128085 128315 6.42 - 0 gene_5 # AA 124:200 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 130317 130491 3.37 - 1 gene_5 # AA 65:123 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 First 134216 134409 3.06 - 0 gene_5 # AA 1: 65 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Single 138576 139844 33.14 + 0 gene_6 # AA 1:423 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 First 144801 145043 4.49 + 0 gene_7 # AA 1: 81 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 170448 170661 4.00 + 0 gene_7 # AA 82:153 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK geneid_v1.0 Internal 172504 172550 0.78 + 2 gene_7 # AA 153:168 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 4565 4627 8.56 - 0 gene_1 # AA 149:169 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 9956 10143 23.75 - 2 gene_1 # AA 86:148 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X First 62698 62700 -9.86 + 0 gene_2 # AA 1: 1 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Terminal 67179 67508 54.90 + 0 gene_2 # AA 2:111 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Terminal 73005 73235 25.73 - 0 gene_3 # AA 75:151 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X First 74949 75170 18.73 - 0 gene_3 # AA 1: 74 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Terminal 79661 79857 26.63 - 2 gene_4 # AA 643:708 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 80376 80494 21.80 - 1 gene_4 # AA 603:643 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 81136 81200 -1.59 - 0 gene_4 # AA 582:603 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 82558 82813 51.33 - 1 gene_4 # AA 496:581 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 83290 83533 36.85 - 2 gene_4 # AA 415:496 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 84015 84089 4.73 - 2 gene_4 # AA 390:415 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 84816 84943 22.24 - 1 gene_4 # AA 347:390 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 85123 85202 -0.04 - 0 gene_4 # AA 321:347 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 85799 85853 7.75 - 1 gene_4 # AA 302:320 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 86594 86656 13.00 - 1 gene_4 # AA 281:302 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 87074 87261 30.63 - 0 gene_4 # AA 219:281 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 88679 88746 2.93 - 2 gene_4 # AA 196:218 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 89067 89195 23.15 - 2 gene_4 # AA 153:196 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 96504 96585 8.97 - 0 gene_4 # AA 126:153 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 98139 98207 0.53 - 0 gene_4 # AA 103:125 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 101042 101140 16.57 - 0 gene_4 # AA 70:102 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X First 101650 101856 25.46 - 0 gene_4 # AA 1: 69 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X First 117550 117552 -2.98 + 0 gene_5 # AA 1: 1 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 117965 118070 22.92 + 0 gene_5 # AA 2: 37 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 118261 118328 16.58 + 2 gene_5 # AA 37: 59 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 121841 121963 15.59 + 0 gene_5 # AA 60:100 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Terminal 122234 122254 -4.89 + 0 gene_5 # AA 101:107 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Terminal 124315 124605 22.92 - 0 gene_6 # AA 299:395 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 124876 125073 18.14 - 0 gene_6 # AA 233:298 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 125291 125439 21.75 - 2 gene_6 # AA 183:232 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 128138 128315 26.47 - 0 gene_6 # AA 124:183 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Internal 130317 130491 29.80 - 1 gene_6 # AA 65:123 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X First 134216 134409 27.80 - 0 gene_6 # AA 1: 65 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Single 138495 139844 385.08 + 0 gene_7 # AA 1:450 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X First 143504 143527 -6.11 + 0 gene_8 # AA 1: 8 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.3X Terminal 170195 170470 60.77 + 0 gene_8 # AA 9:100 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 2506 2618 3.13 - 2 gene_1 # AA 86:123 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Terminal 73005 73166 23.20 - 0 gene_2 # AA 45: 98 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol First 75039 75170 14.19 - 0 gene_2 # AA 1: 44 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Terminal 76391 76462 7.44 - 0 gene_3 # AA 692:715 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 79700 79857 27.01 - 2 gene_3 # AA 639:691 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 80376 80494 22.45 - 1 gene_3 # AA 599:639 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 81136 81200 8.61 - 0 gene_3 # AA 578:599 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 82558 82774 44.53 - 1 gene_3 # AA 505:577 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 83290 83533 36.85 - 2 gene_3 # AA 424:505 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 84015 84089 4.73 - 2 gene_3 # AA 399:424 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 84816 84943 22.49 - 1 gene_3 # AA 356:399 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 85123 85202 -0.04 - 0 gene_3 # AA 330:356 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 85799 85853 7.75 - 1 gene_3 # AA 311:329 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 86594 86656 13.00 - 1 gene_3 # AA 290:311 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 87074 87261 30.63 - 0 gene_3 # AA 228:290 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 88679 88746 2.93 - 2 gene_3 # AA 205:227 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 89067 89195 23.15 - 2 gene_3 # AA 162:205 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 96504 96585 8.97 - 0 gene_3 # AA 135:162 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 98139 98207 9.18 - 0 gene_3 # AA 112:134 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 101042 101140 16.57 - 0 gene_3 # AA 79:111 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 101650 101839 30.76 - 1 gene_3 # AA 15: 78 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol First 112445 112488 -1.77 - 0 gene_3 # AA 1: 15 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol First 117550 117552 -2.98 + 0 gene_4 # AA 1: 1 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 117965 118070 22.92 + 0 gene_4 # AA 2: 37 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 118261 118328 16.58 + 2 gene_4 # AA 37: 59 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 121841 121963 15.59 + 0 gene_4 # AA 60:100 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Terminal 122234 122254 -4.89 + 0 gene_4 # AA 101:107 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Terminal 124315 124605 22.92 - 0 gene_5 # AA 334:430 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 124876 125073 37.51 - 0 gene_5 # AA 268:333 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 125291 125452 26.77 - 0 gene_5 # AA 214:267 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 127172 127263 5.78 - 2 gene_5 # AA 183:213 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 128138 128315 37.95 - 0 gene_5 # AA 124:183 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 130317 130491 30.15 - 1 gene_5 # AA 65:123 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol First 134216 134409 27.80 - 0 gene_5 # AA 1: 65 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Single 138495 139844 270.80 + 0 gene_6 # AA 1:450 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol First 170637 170661 -0.90 + 0 gene_7 # AA 1: 9 569s Warning: unexpected tab character in last column, line truncated: 569s Hsap_BTK SGP.homol Internal 172504 172550 2.43 + 2 gene_7 # AA 9: 24 569s is okay. 569s /usr/share/doc/gff2ps/test-data/Hsap_BTK_geneid.gff: is okay. 569s /usr/share/doc/gff2ps/test-data/Hsap_BTK_genscan.gff: is okay. 569s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgp3X.gff: is okay. 569s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgpFO.gff: is okay. 569s /usr/share/htslib-test/test/tabix/gff_file.gff: is okay. 569s /usr/share/doc/libbio-graphics-perl/examples/feature_data.gff: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/gms2_example.gff3: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/issue167.gff: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/issue_197.gff: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff: is okay. 569s /usr/lib/python3/dist-packages/gffutils/test/data/synthetic.gff3: is okay. 569s /usr/share/doc/seqan-apps/gustaf/example/stellar.gff: is okay. 569s /usr/share/doc/seqan-apps/insegt/example/annotations.gff: is okay. 569s /usr/share/doc/seqan-apps/insegt/example/readOutput.gff: is okay. 569s /usr/share/doc/seqan-apps/insegt/example/tupleOutput.gff: is okay. 569s /usr/share/doc/seqan-apps/snp_store/example/exampleReads.gff: is okay. 569s /usr/share/doc/cnvkit/examples/test/formats/example.gff: is okay. 569s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3: is okay. 569s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3: is okay. 569s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3: is okay. 569s /usr/share/doc/proteinortho/examples/C.gff: is okay. 569s /usr/share/doc/proteinortho/examples/C2.gff: is okay. 569s /usr/share/doc/proteinortho/examples/E.gff: is okay. 569s /usr/share/doc/proteinortho/examples/L.gff: is okay. 569s /usr/share/doc/proteinortho/examples/M.gff: is okay. 570s /usr/lib/python3/dist-packages/pybedtools/test/data/d.gff: is okay. 570s /usr/lib/python3/dist-packages/pybedtools/test/data/exons.gff: is okay. 570s /usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff: is okay. 570s /usr/lib/python3/dist-packages/pybedtools/test/data/hg19.gff: is okay. 570s autopkgtest [07:42:23]: test run-tests: -----------------------] 571s autopkgtest [07:42:24]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 571s run-tests PASS 571s autopkgtest [07:42:24]: @@@@@@@@@@@@@@@@@@@@ summary 571s run-tests PASS 585s Creating nova instance adt-noble-arm64-gffread-20240324-073252-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 86f9118c-691d-4fd3-ac71-bf5396ee0d8a)...