0s autopkgtest [19:45:35]: starting date: 2024-02-23
  0s autopkgtest [19:45:35]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline
  0s autopkgtest [19:45:35]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.10ebls8p/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:ruby-defaults,src:genomethreader --apt-upgrade genomethreader --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ruby-defaults/1:3.2~ubuntu1 genomethreader/1.7.3+dfsg-8ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-12.secgroup --name adt-noble-arm64-genomethreader-20240223-194535-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
 88s autopkgtest [19:47:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 89s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 89s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [92.5 kB]
 89s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [9872 B]
 89s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [816 kB]
 89s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [13.8 kB]
 89s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [202 kB]
 89s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
 89s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [52.0 kB]
 89s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
 89s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [944 kB]
 89s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
 89s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [4980 B]
 89s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
 91s Fetched 2264 kB in 1s (2337 kB/s)
 91s Reading package lists...
 95s Reading package lists...
 95s Building dependency tree...
 95s Reading state information...
 96s Calculating upgrade...
 96s The following packages were automatically installed and are no longer required:
 96s   irqbalance libnuma1
 96s Use 'sudo apt autoremove' to remove them.
 96s The following packages will be upgraded:
 96s   apport apport-core-dump-handler apt apt-utils base-files bash binutils
 96s   binutils-aarch64-linux-gnu binutils-common bsdextrautils bsdutils bzip2
 96s   coreutils dash debconf debconf-i18n eject fdisk flash-kernel gzip hostname
 96s   inetutils-telnet libapt-pkg6.0 libbinutils libblkid1 libbz2-1.0 libc-bin
 96s   libc6 libcap2 libcap2-bin libctf-nobfd0 libctf0 libfdisk1 libffi8
 96s   libgprofng0 libmount1 libncurses6 libncursesw6 libnuma1 libpam-cap
 96s   libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth5
 96s   libsframe1 libsmartcols1 libtinfo6 libuuid1 libxml2 locales login
 96s   lto-disabled-list motd-news-config mount ncurses-base ncurses-bin
 96s   ncurses-term passwd plymouth plymouth-theme-ubuntu-text python-apt-common
 96s   python3-apport python3-apt python3-debconf python3-problem-report
 96s   python3-pygments python3-pyrsistent sysvinit-utils telnet u-boot-tools
 96s   ubuntu-minimal ubuntu-standard util-linux uuid-runtime
 96s 75 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 96s Need to get 25.6 MB of archives.
 96s After this operation, 79.9 kB of additional disk space will be used.
 96s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 motd-news-config all 13ubuntu7 [5080 B]
 96s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 locales all 2.39-0ubuntu2 [4230 kB]
 98s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.39-0ubuntu2 [2775 kB]
 99s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.39-0ubuntu2 [591 kB]
 99s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 debconf-i18n all 1.5.86 [205 kB]
 99s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 python3-debconf all 1.5.86 [4160 B]
 99s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 debconf all 1.5.86 [124 kB]
 99s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 base-files arm64 13ubuntu7 [74.4 kB]
 99s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 bash arm64 5.2.21-2ubuntu2 [780 kB]
 99s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 bsdutils arm64 1:2.39.3-6ubuntu2 [97.0 kB]
 99s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 coreutils arm64 9.4-2ubuntu4 [1383 kB]
 99s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 dash arm64 0.5.12-6ubuntu3 [90.2 kB]
 99s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 gzip arm64 1.12-1ubuntu2 [97.1 kB]
 99s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 hostname arm64 3.23+nmu2ubuntu1 [10.9 kB]
 99s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 login arm64 1:4.13+dfsg1-4ubuntu1 [200 kB]
 99s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-bin arm64 6.4+20240113-1ubuntu1 [186 kB]
 99s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 util-linux arm64 2.39.3-6ubuntu2 [1114 kB]
 99s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB]
 99s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-term all 6.4+20240113-1ubuntu1 [275 kB]
 99s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 sysvinit-utils arm64 3.08-6ubuntu2 [33.8 kB]
 99s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 bzip2 arm64 1.0.8-5ubuntu1 [34.0 kB]
 99s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-1.0 arm64 1.0.8-5ubuntu1 [35.8 kB]
 99s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libapt-pkg6.0 arm64 2.7.12 [932 kB]
 99s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 apt arm64 2.7.12 [1337 kB]
 99s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 apt-utils arm64 2.7.12 [205 kB]
 99s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libpam0g arm64 1.5.2-9.1ubuntu3 [66.0 kB]
 99s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules-bin arm64 1.5.2-9.1ubuntu3 [46.8 kB]
 99s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules arm64 1.5.2-9.1ubuntu3 [284 kB]
100s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 mount arm64 2.39.3-6ubuntu2 [116 kB]
100s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libsmartcols1 arm64 2.39.3-6ubuntu2 [63.7 kB]
100s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libuuid1 arm64 2.39.3-6ubuntu2 [34.7 kB]
100s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 uuid-runtime arm64 2.39.3-6ubuntu2 [32.5 kB]
100s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 python-apt-common all 2.7.6 [19.7 kB]
100s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 python3-apt arm64 2.7.6 [206 kB]
100s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 python3-problem-report all 2.28.0-0ubuntu1 [23.6 kB]
100s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 python3-apport all 2.28.0-0ubuntu1 [92.0 kB]
100s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 apport-core-dump-handler all 2.28.0-0ubuntu1 [16.6 kB]
100s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 apport all 2.28.0-0ubuntu1 [83.9 kB]
100s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libblkid1 arm64 2.39.3-6ubuntu2 [122 kB]
100s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libcap2 arm64 1:2.66-5ubuntu1 [30.1 kB]
100s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libmount1 arm64 2.39.3-6ubuntu2 [133 kB]
100s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-runtime all 1.5.2-9.1ubuntu3 [40.4 kB]
100s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses6 arm64 6.4+20240113-1ubuntu1 [110 kB]
100s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libncursesw6 arm64 6.4+20240113-1ubuntu1 [146 kB]
100s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libtinfo6 arm64 6.4+20240113-1ubuntu1 [104 kB]
100s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 passwd arm64 1:4.13+dfsg1-4ubuntu1 [838 kB]
100s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libffi8 arm64 3.4.6-1 [22.6 kB]
100s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 eject arm64 2.39.3-6ubuntu2 [26.5 kB]
100s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-cap arm64 1:2.66-5ubuntu1 [12.5 kB]
100s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libcap2-bin arm64 1:2.66-5ubuntu1 [33.5 kB]
100s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libfdisk1 arm64 2.39.3-6ubuntu2 [142 kB]
100s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxml2 arm64 2.9.14+dfsg-1.3ubuntu1 [734 kB]
100s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pygments all 2.17.2+dfsg-1 [819 kB]
100s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.532 [10.3 kB]
100s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 bsdextrautils arm64 2.39.3-6ubuntu2 [71.6 kB]
100s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 inetutils-telnet arm64 2:2.5-3ubuntu1 [97.6 kB]
100s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma1 arm64 2.0.18-1 [23.5 kB]
100s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libplymouth5 arm64 24.004.60-1ubuntu3 [139 kB]
100s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 plymouth-theme-ubuntu-text arm64 24.004.60-1ubuntu3 [9818 B]
100s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 plymouth arm64 24.004.60-1ubuntu3 [135 kB]
100s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 telnet all 0.17+2.5-3ubuntu1 [3682 B]
100s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.532 [10.3 kB]
100s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libgprofng0 arm64 2.42-3ubuntu1 [777 kB]
100s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libctf0 arm64 2.42-3ubuntu1 [95.7 kB]
100s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libctf-nobfd0 arm64 2.42-3ubuntu1 [99.9 kB]
100s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-aarch64-linux-gnu arm64 2.42-3ubuntu1 [3292 kB]
100s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 binutils arm64 2.42-3ubuntu1 [18.0 kB]
100s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libbinutils arm64 2.42-3ubuntu1 [767 kB]
100s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-common arm64 2.42-3ubuntu1 [239 kB]
100s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libsframe1 arm64 2.42-3ubuntu1 [14.5 kB]
100s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 fdisk arm64 2.39.3-6ubuntu2 [120 kB]
100s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 flash-kernel arm64 3.107ubuntu5 [48.9 kB]
100s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 47 [12.4 kB]
100s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 python3-pyrsistent arm64 0.20.0-1 [59.8 kB]
100s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 u-boot-tools arm64 2024.01+dfsg-1ubuntu2 [294 kB]
101s Preconfiguring packages ...
101s Fetched 25.6 MB in 4s (6244 kB/s)
101s (Reading database ... 
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(Reading database ... 74296 files and directories currently installed.)
101s Preparing to unpack .../motd-news-config_13ubuntu7_all.deb ...
101s Unpacking motd-news-config (13ubuntu7) over (13ubuntu6) ...
101s Preparing to unpack .../locales_2.39-0ubuntu2_all.deb ...
101s Unpacking locales (2.39-0ubuntu2) over (2.38-3ubuntu1) ...
101s Preparing to unpack .../libc6_2.39-0ubuntu2_arm64.deb ...
101s Checking for services that may need to be restarted...
101s Checking init scripts...
101s Checking for services that may need to be restarted...
101s Checking init scripts...
102s Stopping some services possibly affected by the upgrade (will be restarted later):
102s   cron: stopping...done.
102s 
102s Unpacking libc6:arm64 (2.39-0ubuntu2) over (2.38-3ubuntu1) ...
102s Setting up libc6:arm64 (2.39-0ubuntu2) ...
102s Checking for services that may need to be restarted...
102s Checking init scripts...
102s Restarting services possibly affected by the upgrade:
102s   cron: restarting...done.
102s 
102s Services restarted successfully.
102s (Reading database ... 
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(Reading database ... 74305 files and directories currently installed.)
102s Preparing to unpack .../libc-bin_2.39-0ubuntu2_arm64.deb ...
102s Unpacking libc-bin (2.39-0ubuntu2) over (2.38-3ubuntu1) ...
102s Setting up libc-bin (2.39-0ubuntu2) ...
103s (Reading database ... 
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103s Preparing to unpack .../debconf-i18n_1.5.86_all.deb ...
103s Unpacking debconf-i18n (1.5.86) over (1.5.82) ...
103s Preparing to unpack .../python3-debconf_1.5.86_all.deb ...
103s Unpacking python3-debconf (1.5.86) over (1.5.82) ...
103s Preparing to unpack .../debconf_1.5.86_all.deb ...
103s Unpacking debconf (1.5.86) over (1.5.82) ...
103s Setting up debconf (1.5.86) ...
103s Installing new version of config file /etc/debconf.conf ...
103s (Reading database ... 
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103s Preparing to unpack .../base-files_13ubuntu7_arm64.deb ...
103s Unpacking base-files (13ubuntu7) over (13ubuntu6) ...
103s Setting up base-files (13ubuntu7) ...
104s motd-news.service is a disabled or a static unit not running, not starting it.
104s (Reading database ... 
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(Reading database ... 74313 files and directories currently installed.)
104s Preparing to unpack .../bash_5.2.21-2ubuntu2_arm64.deb ...
104s Unpacking bash (5.2.21-2ubuntu2) over (5.2.21-2ubuntu1) ...
104s Setting up bash (5.2.21-2ubuntu2) ...
104s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
104s (Reading database ... 
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104s Preparing to unpack .../bsdutils_1%3a2.39.3-6ubuntu2_arm64.deb ...
104s Unpacking bsdutils (1:2.39.3-6ubuntu2) over (1:2.39.2-6ubuntu1) ...
104s Setting up bsdutils (1:2.39.3-6ubuntu2) ...
104s (Reading database ... 
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(Reading database ... 74313 files and directories currently installed.)
104s Preparing to unpack .../coreutils_9.4-2ubuntu4_arm64.deb ...
104s Unpacking coreutils (9.4-2ubuntu4) over (9.4-2ubuntu2) ...
104s Setting up coreutils (9.4-2ubuntu4) ...
104s (Reading database ... 
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(Reading database ... 74313 files and directories currently installed.)
104s Preparing to unpack .../dash_0.5.12-6ubuntu3_arm64.deb ...
104s Unpacking dash (0.5.12-6ubuntu3) over (0.5.12-6ubuntu1) ...
104s Setting up dash (0.5.12-6ubuntu3) ...
104s (Reading database ... 
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(Reading database ... 74312 files and directories currently installed.)
104s Preparing to unpack .../gzip_1.12-1ubuntu2_arm64.deb ...
104s Unpacking gzip (1.12-1ubuntu2) over (1.12-1ubuntu1) ...
104s dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress')
104s dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress')
104s Setting up gzip (1.12-1ubuntu2) ...
104s (Reading database ... 
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(Reading database ... 74312 files and directories currently installed.)
104s Preparing to unpack .../hostname_3.23+nmu2ubuntu1_arm64.deb ...
104s Unpacking hostname (3.23+nmu2ubuntu1) over (3.23+nmu1ubuntu1) ...
104s Setting up hostname (3.23+nmu2ubuntu1) ...
105s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 74312 files and directories currently installed.)
105s Preparing to unpack .../login_1%3a4.13+dfsg1-4ubuntu1_arm64.deb ...
106s Unpacking login (1:4.13+dfsg1-4ubuntu1) over (1:4.13+dfsg1-3ubuntu1) ...
106s Setting up login (1:4.13+dfsg1-4ubuntu1) ...
106s (Reading database ... 
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111s Preparing to unpack .../21-binutils-common_2.42-3ubuntu1_arm64.deb ...
111s Unpacking binutils-common:arm64 (2.42-3ubuntu1) over (2.42-2ubuntu1) ...
111s Preparing to unpack .../22-libsframe1_2.42-3ubuntu1_arm64.deb ...
111s Unpacking libsframe1:arm64 (2.42-3ubuntu1) over (2.42-2ubuntu1) ...
111s Preparing to unpack .../23-fdisk_2.39.3-6ubuntu2_arm64.deb ...
111s Unpacking fdisk (2.39.3-6ubuntu2) over (2.39.2-6ubuntu1) ...
111s Preparing to unpack .../24-flash-kernel_3.107ubuntu5_arm64.deb ...
111s Unpacking flash-kernel (3.107ubuntu5) over (3.107ubuntu4) ...
111s Preparing to unpack .../25-lto-disabled-list_47_all.deb ...
111s Unpacking lto-disabled-list (47) over (46) ...
111s Preparing to unpack .../26-python3-pyrsistent_0.20.0-1_arm64.deb ...
111s Unpacking python3-pyrsistent:arm64 (0.20.0-1) over (0.18.1-1build5) ...
111s Preparing to unpack .../27-u-boot-tools_2024.01+dfsg-1ubuntu2_arm64.deb ...
111s Unpacking u-boot-tools (2024.01+dfsg-1ubuntu2) over (2024.01+dfsg-1ubuntu1) ...
111s Setting up motd-news-config (13ubuntu7) ...
111s Setting up lto-disabled-list (47) ...
111s Setting up apt-utils (2.7.12) ...
111s Setting up flash-kernel (3.107ubuntu5) ...
111s Installing new version of config file /etc/flash-kernel/bootscript/bootscr.zynqmp ...
111s flash-kernel: deferring update (trigger activated)
111s Setting up bsdextrautils (2.39.3-6ubuntu2) ...
111s Setting up python3-problem-report (2.28.0-0ubuntu1) ...
111s Setting up python3-debconf (1.5.86) ...
112s Setting up binutils-common:arm64 (2.42-3ubuntu1) ...
112s Setting up inetutils-telnet (2:2.5-3ubuntu1) ...
112s Setting up libctf-nobfd0:arm64 (2.42-3ubuntu1) ...
112s Setting up debconf-i18n (1.5.86) ...
112s Setting up ubuntu-standard (1.532) ...
112s Setting up bzip2 (1.0.8-5ubuntu1) ...
112s Setting up locales (2.39-0ubuntu2) ...
112s Installing new version of config file /etc/locale.alias ...
112s Generating locales (this might take a while)...
114s   en_US.UTF-8... done
114s Generation complete.
114s Setting up libsframe1:arm64 (2.42-3ubuntu1) ...
114s Setting up libcap2-bin (1:2.66-5ubuntu1) ...
114s Setting up eject (2.39.3-6ubuntu2) ...
114s Setting up python3-pygments (2.17.2+dfsg-1) ...
115s Setting up libncurses6:arm64 (6.4+20240113-1ubuntu1) ...
115s Setting up libncursesw6:arm64 (6.4+20240113-1ubuntu1) ...
115s Setting up libfdisk1:arm64 (2.39.3-6ubuntu2) ...
115s Setting up libnuma1:arm64 (2.0.18-1) ...
115s Setting up python3-pyrsistent:arm64 (0.20.0-1) ...
115s Setting up u-boot-tools (2024.01+dfsg-1ubuntu2) ...
115s Setting up python-apt-common (2.7.6) ...
115s Setting up mount (2.39.3-6ubuntu2) ...
115s Setting up uuid-runtime (2.39.3-6ubuntu2) ...
116s uuidd.service is a disabled or a static unit not running, not starting it.
116s Setting up libplymouth5:arm64 (24.004.60-1ubuntu3) ...
116s Setting up libbinutils:arm64 (2.42-3ubuntu1) ...
116s Setting up libpam-cap:arm64 (1:2.66-5ubuntu1) ...
116s Setting up libxml2:arm64 (2.9.14+dfsg-1.3ubuntu1) ...
116s Setting up ncurses-term (6.4+20240113-1ubuntu1) ...
116s Setting up libctf0:arm64 (2.42-3ubuntu1) ...
116s Setting up telnet (0.17+2.5-3ubuntu1) ...
116s Setting up ubuntu-minimal (1.532) ...
116s Setting up plymouth (24.004.60-1ubuntu3) ...
116s update-initramfs: Generating /boot/initrd.img-6.6.0-14-generic
116s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
125s flash-kernel: deferring update (trigger activated)
125s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
125s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
126s Setting up python3-apt (2.7.6) ...
126s Setting up fdisk (2.39.3-6ubuntu2) ...
126s Setting up python3-apport (2.28.0-0ubuntu1) ...
126s Setting up libgprofng0:arm64 (2.42-3ubuntu1) ...
126s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu3) ...
126s update-initramfs: deferring update (trigger activated)
126s Setting up binutils-aarch64-linux-gnu (2.42-3ubuntu1) ...
126s Setting up binutils (2.42-3ubuntu1) ...
126s Setting up apport (2.28.0-0ubuntu1) ...
127s apport-autoreport.service is a disabled or a static unit not running, not starting it.
127s Setting up apport-core-dump-handler (2.28.0-0ubuntu1) ...
128s Processing triggers for man-db (2.12.0-3) ...
129s Processing triggers for debianutils (5.16) ...
129s Processing triggers for install-info (7.1-3) ...
129s Processing triggers for initramfs-tools (0.142ubuntu19) ...
129s update-initramfs: Generating /boot/initrd.img-6.6.0-14-generic
129s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
138s System running in EFI mode, skipping.
138s Processing triggers for libc-bin (2.39-0ubuntu2) ...
138s Processing triggers for flash-kernel (3.107ubuntu5) ...
138s System running in EFI mode, skipping.
138s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
138s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
138s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s The following packages will be REMOVED:
142s   irqbalance* libnuma1*
142s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded.
142s After this operation, 332 kB disk space will be freed.
142s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74340 files and directories currently installed.)
142s Removing irqbalance (1.9.3-2ubuntu2) ...
143s Removing libnuma1:arm64 (2.0.18-1) ...
143s Processing triggers for man-db (2.12.0-3) ...
143s Processing triggers for libc-bin (2.39-0ubuntu2) ...
143s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74326 files and directories currently installed.)
143s Purging configuration files for irqbalance (1.9.3-2ubuntu2) ...
144s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
144s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
144s sh: Attempting to set up Debian/Ubuntu apt sources automatically
144s sh: Distribution appears to be Ubuntu
144s Reading package lists...
145s Building dependency tree...
145s Reading state information...
145s eatmydata is already the newest version (131-1).
145s dbus is already the newest version (1.14.10-3ubuntu1).
145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
145s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s rng-tools-debian is already the newest version (2.4).
146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
146s Reading package lists...
147s Building dependency tree...
147s Reading state information...
147s haveged is already the newest version (1.9.14-1ubuntu1).
147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
147s Reading package lists...
148s Building dependency tree...
148s Reading state information...
148s The following packages will be REMOVED:
148s   cloud-init* python3-configobj* python3-debconf*
149s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
149s After this operation, 3228 kB disk space will be freed.
149s (Reading database ... 
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(Reading database ... 65%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74324 files and directories currently installed.)
149s Removing cloud-init (24.1~6ga4140119-0ubuntu1) ...
149s Removing python3-configobj (5.0.8-3) ...
149s Removing python3-debconf (1.5.86) ...
149s Processing triggers for man-db (2.12.0-3) ...
150s (Reading database ... 
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73936 files and directories currently installed.)
150s Purging configuration files for cloud-init (24.1~6ga4140119-0ubuntu1) ...
151s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
151s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
154s Reading package lists...
154s Building dependency tree...
154s Reading state information...
155s linux-generic is already the newest version (6.6.0-14.14).
155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
155s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
155s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
155s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
155s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
155s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease
159s Reading package lists...
159s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s Reading package lists...W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
159s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
159s 
159s Building dependency tree...
159s Reading state information...
160s Calculating upgrade...
160s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
160s Reading package lists...
160s Building dependency tree...
160s Reading state information...
161s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
161s autopkgtest [19:48:16]: rebooting testbed after setup commands that affected boot
306s autopkgtest [19:50:41]: testbed running kernel: Linux 6.6.0-14-generic #14-Ubuntu SMP PREEMPT_DYNAMIC Thu Nov 30 10:53:08 UTC 2023
307s autopkgtest [19:50:42]: testbed dpkg architecture: arm64
308s autopkgtest [19:50:43]: @@@@@@@@@@@@@@@@@@@@ apt-source genomethreader
309s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1
309s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
309s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2
311s Get:1 http://ftpmaster.internal/ubuntu noble/universe genomethreader 1.7.3+dfsg-8ubuntu1 (dsc) [2364 B]
311s Get:2 http://ftpmaster.internal/ubuntu noble/universe genomethreader 1.7.3+dfsg-8ubuntu1 (tar) [40.0 MB]
311s Get:3 http://ftpmaster.internal/ubuntu noble/universe genomethreader 1.7.3+dfsg-8ubuntu1 (diff) [14.2 kB]
312s gpgv: Signature made Fri Feb 23 03:38:20 2024 UTC
312s gpgv:                using RSA key 8ED6C3F8BAC9DB7FC130A870F823A2729883C97C
312s gpgv:                issuer "kanashiro@ubuntu.com"
312s gpgv: Can't check signature: No public key
312s dpkg-source: warning: cannot verify inline signature for ./genomethreader_1.7.3+dfsg-8ubuntu1.dsc: no acceptable signature found
312s autopkgtest [19:50:47]: testing package genomethreader version 1.7.3+dfsg-8ubuntu1
312s autopkgtest [19:50:47]: build not needed
315s autopkgtest [19:50:50]: test run-testsuite: preparing testbed
317s Reading package lists...
317s Building dependency tree...
317s Reading state information...
318s Correcting dependencies...Starting pkgProblemResolver with broken count: 0
318s Starting 2 pkgProblemResolver with broken count: 0
318s Done
318s  Done
318s Starting pkgProblemResolver with broken count: 0
319s Starting 2 pkgProblemResolver with broken count: 0
319s Done
319s The following additional packages will be installed:
319s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
319s   genomethreader genometools genometools-common libcairo2 libdatrie1
319s   libfontconfig1 libgenometools0 libgraphite2-3 libharfbuzz0b liblua5.1-0
319s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpixman-1-0 libruby
319s   libruby3.2 libthai-data libthai0 libtre5 libxcb-render0 libxcb-shm0
319s   libxrender1 lua-filesystem lua-lpeg lua-md5 rake ruby ruby-net-telnet
319s   ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.2
319s   rubygems-integration
319s Suggested packages:
319s   tre-agrep ri ruby-dev bundler
319s Recommended packages:
319s   zip fonts-lato libjs-jquery
319s The following NEW packages will be installed:
319s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
319s   genomethreader genometools genometools-common libcairo2 libdatrie1
319s   libfontconfig1 libgenometools0 libgraphite2-3 libharfbuzz0b liblua5.1-0
319s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpixman-1-0 libruby
319s   libruby3.2 libthai-data libthai0 libtre5 libxcb-render0 libxcb-shm0
319s   libxrender1 lua-filesystem lua-lpeg lua-md5 rake ruby ruby-net-telnet
319s   ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.2
319s   rubygems-integration
319s 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded.
319s 1 not fully installed or removed.
319s Need to get 14.1 MB of archives.
319s After this operation, 64.7 MB of additional disk space will be used.
319s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
320s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
320s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.14.2-6ubuntu1 [36.0 kB]
320s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.14.2-6ubuntu1 [140 kB]
320s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
320s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
320s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
320s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
320s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
320s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 liblua5.1-0 arm64 5.1.5-9 [115 kB]
320s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.14.2-6ubuntu1 [190 kB]
320s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
320s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
320s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
320s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
320s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
320s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
320s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
320s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
320s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 libtre5 arm64 0.8.0-7 [47.3 kB]
320s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 lua-md5 arm64 1.2+git+1+8d87fee-2 [14.0 kB]
320s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 genometools-common all 1.6.5+ds-2 [194 kB]
320s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libgenometools0 arm64 1.6.5+ds-2 [505 kB]
320s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 genomethreader arm64 1.7.3+dfsg-8ubuntu1 [1953 kB]
320s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 lua-filesystem arm64 1.8.0-3 [13.7 kB]
320s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 lua-lpeg arm64 1.0.2-2 [38.6 kB]
320s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 genometools arm64 1.6.5+ds-2 [1839 kB]
320s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 rubygems-integration all 1.18 [5336 B]
320s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 rake all 13.0.6-3 [61.6 kB]
320s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 ruby-net-telnet all 0.2.0-1 [13.3 kB]
320s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 ruby-webrick all 1.8.1-1 [52.3 kB]
320s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 ruby-xmlrpc all 0.3.2-2 [24.8 kB]
320s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libruby arm64 1:3.2~ubuntu1 [4694 B]
320s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 ruby-sdbm arm64 1.0.0-5build3 [17.9 kB]
320s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libruby3.2 arm64 3.2.3-1 [5345 kB]
321s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 ruby3.2 arm64 3.2.3-1 [50.8 kB]
321s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 ruby-rubygems all 3.4.20-1 [238 kB]
321s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ruby arm64 1:3.2~ubuntu1 [3466 B]
321s Fetched 14.1 MB in 1s (11.0 MB/s)
321s Selecting previously unselected package fonts-dejavu-mono.
321s (Reading database ... 
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(Reading database ... 45%
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 73881 files and directories currently installed.)
321s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
321s Unpacking fonts-dejavu-mono (2.37-8) ...
321s Selecting previously unselected package fonts-dejavu-core.
321s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
321s Unpacking fonts-dejavu-core (2.37-8) ...
321s Selecting previously unselected package fontconfig-config.
321s Preparing to unpack .../02-fontconfig-config_2.14.2-6ubuntu1_arm64.deb ...
321s Unpacking fontconfig-config (2.14.2-6ubuntu1) ...
321s Selecting previously unselected package libfontconfig1:arm64.
321s Preparing to unpack .../03-libfontconfig1_2.14.2-6ubuntu1_arm64.deb ...
321s Unpacking libfontconfig1:arm64 (2.14.2-6ubuntu1) ...
321s Selecting previously unselected package libpixman-1-0:arm64.
321s Preparing to unpack .../04-libpixman-1-0_0.42.2-1_arm64.deb ...
321s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
321s Selecting previously unselected package libxcb-render0:arm64.
321s Preparing to unpack .../05-libxcb-render0_1.15-1_arm64.deb ...
321s Unpacking libxcb-render0:arm64 (1.15-1) ...
321s Selecting previously unselected package libxcb-shm0:arm64.
321s Preparing to unpack .../06-libxcb-shm0_1.15-1_arm64.deb ...
321s Unpacking libxcb-shm0:arm64 (1.15-1) ...
321s Selecting previously unselected package libxrender1:arm64.
321s Preparing to unpack .../07-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
321s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
321s Selecting previously unselected package libcairo2:arm64.
321s Preparing to unpack .../08-libcairo2_1.18.0-1_arm64.deb ...
321s Unpacking libcairo2:arm64 (1.18.0-1) ...
321s Selecting previously unselected package liblua5.1-0:arm64.
321s Preparing to unpack .../09-liblua5.1-0_5.1.5-9_arm64.deb ...
321s Unpacking liblua5.1-0:arm64 (5.1.5-9) ...
321s Selecting previously unselected package fontconfig.
321s Preparing to unpack .../10-fontconfig_2.14.2-6ubuntu1_arm64.deb ...
321s Unpacking fontconfig (2.14.2-6ubuntu1) ...
321s Selecting previously unselected package libgraphite2-3:arm64.
321s Preparing to unpack .../11-libgraphite2-3_1.3.14-2_arm64.deb ...
321s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
322s Selecting previously unselected package libharfbuzz0b:arm64.
322s Preparing to unpack .../12-libharfbuzz0b_8.3.0-2_arm64.deb ...
322s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
322s Selecting previously unselected package libthai-data.
322s Preparing to unpack .../13-libthai-data_0.1.29-2_all.deb ...
322s Unpacking libthai-data (0.1.29-2) ...
322s Selecting previously unselected package libdatrie1:arm64.
322s Preparing to unpack .../14-libdatrie1_0.2.13-3_arm64.deb ...
322s Unpacking libdatrie1:arm64 (0.2.13-3) ...
322s Selecting previously unselected package libthai0:arm64.
322s Preparing to unpack .../15-libthai0_0.1.29-2_arm64.deb ...
322s Unpacking libthai0:arm64 (0.1.29-2) ...
322s Selecting previously unselected package libpango-1.0-0:arm64.
322s Preparing to unpack .../16-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
322s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
322s Selecting previously unselected package libpangoft2-1.0-0:arm64.
322s Preparing to unpack .../17-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
322s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
322s Selecting previously unselected package libpangocairo-1.0-0:arm64.
322s Preparing to unpack .../18-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
322s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
322s Selecting previously unselected package libtre5:arm64.
322s Preparing to unpack .../19-libtre5_0.8.0-7_arm64.deb ...
322s Unpacking libtre5:arm64 (0.8.0-7) ...
322s Selecting previously unselected package lua-md5:arm64.
322s Preparing to unpack .../20-lua-md5_1.2+git+1+8d87fee-2_arm64.deb ...
322s Unpacking lua-md5:arm64 (1.2+git+1+8d87fee-2) ...
322s Selecting previously unselected package genometools-common.
322s Preparing to unpack .../21-genometools-common_1.6.5+ds-2_all.deb ...
322s Unpacking genometools-common (1.6.5+ds-2) ...
322s Selecting previously unselected package libgenometools0.
322s Preparing to unpack .../22-libgenometools0_1.6.5+ds-2_arm64.deb ...
322s Unpacking libgenometools0 (1.6.5+ds-2) ...
322s Selecting previously unselected package genomethreader.
322s Preparing to unpack .../23-genomethreader_1.7.3+dfsg-8ubuntu1_arm64.deb ...
322s Unpacking genomethreader (1.7.3+dfsg-8ubuntu1) ...
322s Selecting previously unselected package lua-filesystem:arm64.
322s Preparing to unpack .../24-lua-filesystem_1.8.0-3_arm64.deb ...
322s Unpacking lua-filesystem:arm64 (1.8.0-3) ...
322s Selecting previously unselected package lua-lpeg:arm64.
322s Preparing to unpack .../25-lua-lpeg_1.0.2-2_arm64.deb ...
322s Unpacking lua-lpeg:arm64 (1.0.2-2) ...
322s Selecting previously unselected package genometools.
322s Preparing to unpack .../26-genometools_1.6.5+ds-2_arm64.deb ...
322s Unpacking genometools (1.6.5+ds-2) ...
322s Selecting previously unselected package rubygems-integration.
322s Preparing to unpack .../27-rubygems-integration_1.18_all.deb ...
322s Unpacking rubygems-integration (1.18) ...
322s Selecting previously unselected package rake.
322s Preparing to unpack .../28-rake_13.0.6-3_all.deb ...
322s Unpacking rake (13.0.6-3) ...
322s Selecting previously unselected package ruby-net-telnet.
322s Preparing to unpack .../29-ruby-net-telnet_0.2.0-1_all.deb ...
322s Unpacking ruby-net-telnet (0.2.0-1) ...
322s Selecting previously unselected package ruby-webrick.
322s Preparing to unpack .../30-ruby-webrick_1.8.1-1_all.deb ...
322s Unpacking ruby-webrick (1.8.1-1) ...
322s Selecting previously unselected package ruby-xmlrpc.
322s Preparing to unpack .../31-ruby-xmlrpc_0.3.2-2_all.deb ...
322s Unpacking ruby-xmlrpc (0.3.2-2) ...
322s Selecting previously unselected package libruby:arm64.
322s Preparing to unpack .../32-libruby_1%3a3.2~ubuntu1_arm64.deb ...
322s Unpacking libruby:arm64 (1:3.2~ubuntu1) ...
322s Selecting previously unselected package ruby-sdbm:arm64.
322s Preparing to unpack .../33-ruby-sdbm_1.0.0-5build3_arm64.deb ...
322s Unpacking ruby-sdbm:arm64 (1.0.0-5build3) ...
322s Selecting previously unselected package libruby3.2:arm64.
322s Preparing to unpack .../34-libruby3.2_3.2.3-1_arm64.deb ...
322s Unpacking libruby3.2:arm64 (3.2.3-1) ...
323s Selecting previously unselected package ruby3.2.
323s Preparing to unpack .../35-ruby3.2_3.2.3-1_arm64.deb ...
323s Unpacking ruby3.2 (3.2.3-1) ...
323s Selecting previously unselected package ruby-rubygems.
323s Preparing to unpack .../36-ruby-rubygems_3.4.20-1_all.deb ...
323s Unpacking ruby-rubygems (3.4.20-1) ...
323s Selecting previously unselected package ruby.
323s Preparing to unpack .../37-ruby_1%3a3.2~ubuntu1_arm64.deb ...
323s Unpacking ruby (1:3.2~ubuntu1) ...
323s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
323s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
323s Setting up lua-lpeg:arm64 (1.0.2-2) ...
323s Setting up libtre5:arm64 (0.8.0-7) ...
323s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
323s Setting up libdatrie1:arm64 (0.2.13-3) ...
323s Setting up libxcb-render0:arm64 (1.15-1) ...
323s Setting up rubygems-integration (1.18) ...
323s Setting up libxcb-shm0:arm64 (1.15-1) ...
323s Setting up lua-filesystem:arm64 (1.8.0-3) ...
323s Setting up lua-md5:arm64 (1.2+git+1+8d87fee-2) ...
323s Setting up ruby-net-telnet (0.2.0-1) ...
323s Setting up fonts-dejavu-mono (2.37-8) ...
323s Setting up fonts-dejavu-core (2.37-8) ...
323s Setting up ruby-webrick (1.8.1-1) ...
323s Setting up liblua5.1-0:arm64 (5.1.5-9) ...
323s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
323s Setting up libthai-data (0.1.29-2) ...
323s Setting up ruby-xmlrpc (0.3.2-2) ...
323s Setting up fontconfig-config (2.14.2-6ubuntu1) ...
323s Setting up libthai0:arm64 (0.1.29-2) ...
323s Setting up libfontconfig1:arm64 (2.14.2-6ubuntu1) ...
323s Setting up fontconfig (2.14.2-6ubuntu1) ...
325s Regenerating fonts cache... done.
325s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
325s Setting up libcairo2:arm64 (1.18.0-1) ...
325s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
325s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
325s Setting up genometools-common (1.6.5+ds-2) ...
325s Setting up libgenometools0 (1.6.5+ds-2) ...
325s Setting up genomethreader (1.7.3+dfsg-8ubuntu1) ...
325s Setting up genometools (1.6.5+ds-2) ...
325s Setting up ruby-rubygems (3.4.20-1) ...
325s Setting up ruby3.2 (3.2.3-1) ...
325s Setting up ruby (1:3.2~ubuntu1) ...
325s Setting up rake (13.0.6-3) ...
325s Setting up autopkgtest-satdep (0) ...
325s Setting up libruby3.2:arm64 (3.2.3-1) ...
325s Setting up libruby:arm64 (1:3.2~ubuntu1) ...
325s Setting up ruby-sdbm:arm64 (1.0.0-5build3) ...
325s Processing triggers for libc-bin (2.39-0ubuntu2) ...
325s Processing triggers for man-db (2.12.0-3) ...
330s (Reading database ... 77540 files and directories currently installed.)
330s Removing autopkgtest-satdep (0) ...
331s autopkgtest [19:51:06]: test run-testsuite: [-----------------------
331s   1: gth                                                         : ok
331s   2: gth -help                                                   : ok
332s   3: gth -help+                                                  : ok
332s   4: gth -version                                                : ok
332s   5: gth regression test (assertion in gthsafilter)              : ok
332s   6: gth regression test (-gff3out -intermediate)                : ok
332s   8: gth regression test (-gff3out -skipalignmentout)            : ok
333s  10: gth regression test (-gff3out -intermediate -o)             : ok
333s  11: gth regression test (-gff3out -skipalignmentout -o)         : ok
333s  12: gthconsensus regression test (-gff3out -intermediate)       : ok
333s  13: gthconsensus regression test (-gff3out -skipalignmentout)   : ok
334s  14: gthconsensus regression test (-gff3out -intermediate -o)    : ok
334s  15: gthconsensus regression test (-gff3out -skipalignmentout -o): ok
334s  16: gth regression test (-exondistri)                           : ok
334s  17: gth regression test (-introndistri)                         : ok
334s  18: gth regression test (-refseqcovdistri)                      : ok
335s  19: gth regression test (all distributions)                     : ok
335s  20: gth regression test (-skipindexcheck)                       : ok
335s  21: gth regression test (index reconstruction)                  : ok
335s  22: gth regression test (-createindicesonly & -noautoindex)     : ok
335s  23: gth regression test (coverage assertion)                    : ok
336s  24: gth -gff3out -intermediate (long intron files)              : ok
337s  25: gth -gff3out -skipalignmentout (long intron files)          : ok
337s  26: gth -gff3out -frompos (correct positions in sequence region): ok
337s  27: gth -gff3out -intermediate (correct reverse positions)      : ok
341s  28: gth arabidopsis                                             : ok
341s  29: gth illegal character in protein file                       : ok
342s  30: align_dna                                                   : ok
342s  31: gth -gff3descranges (single exon)                           : ok
342s  32: gthconsensus -help                                          : ok
342s  33: gthconsensus -help+                                         : ok
343s  34: gthconsensus empty_file                                     : ok
343s  35: gthconsensus empty_file.gz                                  : ok
343s  36: gthconsensus empty_file.bz2                                 : ok
343s  37: gthbssmfileinfo (arabidopsis)                               : ok
343s  38: gthbssmfileinfo (human)                                     : ok
343s  39: gthbssmprint (arabidopsis)                                  : ok
344s  40: gthbssmprint (human)                                        : ok
344s  41: gthbssmrmsd (arabidopsis)                                   : ok
351s  42: gthbssmtrain (examples from manual)                         : ok
352s  43: gthbssmtrain (file, no introns)                             : ok
352s  44: gthbssmtrain (file, introns)                                : ok
353s  45: gthbssmtrain (stdin, no introns)                            : ok
353s  46: gthbssmtrain (stdin, introns)                               : ok
353s  47: gthbssmtrain (short intron)                                 : ok
354s autopkgtest [19:51:29]: test run-testsuite: -----------------------]
354s run-testsuite        PASS
354s autopkgtest [19:51:29]: test run-testsuite:  - - - - - - - - - - results - - - - - - - - - -
354s autopkgtest [19:51:29]: @@@@@@@@@@@@@@@@@@@@ summary
354s run-testsuite        PASS
368s Creating nova instance adt-noble-arm64-genomethreader-20240223-194535-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240220.img (UUID ee9b1738-1a00-4650-a0c1-d59e2fa31c73)...