0s autopkgtest [02:22:26]: starting date and time: 2024-03-24 02:22:26+0000 0s autopkgtest [02:22:26]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:22:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.brmu8a2y/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:libseqlib,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade freebayes --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=libseqlib/1.2.0+dfsg-11build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-9.secgroup --name adt-noble-arm64-freebayes-20240324-020602-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 95s autopkgtest [02:24:01]: testbed dpkg architecture: arm64 96s autopkgtest [02:24:02]: testbed apt version: 2.7.12 96s autopkgtest [02:24:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 97s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 97s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 97s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 97s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4043 kB] 98s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [707 kB] 98s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 98s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 98s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 98s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4363 kB] 98s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 98s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 98s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 100s Fetched 9903 kB in 2s (5441 kB/s) 100s Reading package lists... 102s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 104s The following packages will be REMOVED: 104s libssl3 104s The following NEW packages will be installed: 104s libssl3t64 104s The following packages have been kept back: 104s curl 104s The following packages will be upgraded: 104s openssl 104s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 104s Need to get 2777 kB of archives. 104s After this operation, 139 kB of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 104s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 105s Fetched 2777 kB in 1s (4053 kB/s) 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 105s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 105s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 105s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 105s wget depends on libssl3 (>= 3.0.0). 105s u-boot-tools depends on libssl3 (>= 3.0.0). 105s tnftp depends on libssl3 (>= 3.0.0). 105s tcpdump depends on libssl3 (>= 3.0.0). 105s systemd-resolved depends on libssl3 (>= 3.0.0). 105s systemd depends on libssl3 (>= 3.0.0). 105s sudo depends on libssl3 (>= 3.0.0). 105s sbsigntool depends on libssl3 (>= 3.0.0). 105s rsync depends on libssl3 (>= 3.0.0). 105s python3-cryptography depends on libssl3 (>= 3.0.0). 105s openssh-server depends on libssl3 (>= 3.0.10). 105s openssh-client depends on libssl3 (>= 3.0.10). 105s mtd-utils depends on libssl3 (>= 3.0.0). 105s mokutil depends on libssl3 (>= 3.0.0). 105s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 105s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 105s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 105s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 105s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 105s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 105s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 105s libnvme1 depends on libssl3 (>= 3.0.0). 105s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 105s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 105s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 105s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 105s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 105s kmod depends on libssl3 (>= 3.0.0). 105s dhcpcd-base depends on libssl3 (>= 3.0.0). 105s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 105s 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 105s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 105s Selecting previously unselected package libssl3t64:arm64. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 105s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 105s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 105s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 105s Setting up openssl (3.0.13-0ubuntu2) ... 105s Processing triggers for man-db (2.12.0-3) ... 105s Processing triggers for libc-bin (2.39-0ubuntu6) ... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 107s sh: Attempting to set up Debian/Ubuntu apt sources automatically 107s sh: Distribution appears to be Ubuntu 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s eatmydata is already the newest version (131-1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s dbus is already the newest version (1.14.10-4ubuntu1). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s rng-tools-debian is already the newest version (2.4). 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s The following packages will be REMOVED: 111s cloud-init* python3-configobj* python3-debconf* 112s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 112s After this operation, 3256 kB disk space will be freed. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 112s Removing cloud-init (24.1.2-0ubuntu1) ... 112s Removing python3-configobj (5.0.8-3) ... 112s Removing python3-debconf (1.5.86) ... 112s Processing triggers for man-db (2.12.0-3) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 113s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 113s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 113s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 113s invoke-rc.d: policy-rc.d denied execution of try-restart. 113s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s linux-generic is already the newest version (6.8.0-11.11+1). 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 115s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 115s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 117s Reading package lists... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s autopkgtest [02:24:25]: rebooting testbed after setup commands that affected boot 267s autopkgtest [02:26:53]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 269s autopkgtest [02:26:55]: @@@@@@@@@@@@@@@@@@@@ apt-source freebayes 271s Get:1 http://ftpmaster.internal/ubuntu noble/universe freebayes 1.3.7-1 (dsc) [2185 B] 271s Get:2 http://ftpmaster.internal/ubuntu noble/universe freebayes 1.3.7-1 (tar) [2902 kB] 271s Get:3 http://ftpmaster.internal/ubuntu noble/universe freebayes 1.3.7-1 (diff) [11.8 kB] 271s gpgv: Signature made Mon Aug 21 12:17:20 2023 UTC 271s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 271s gpgv: Can't check signature: No public key 271s dpkg-source: warning: cannot verify inline signature for ./freebayes_1.3.7-1.dsc: no acceptable signature found 271s autopkgtest [02:26:57]: testing package freebayes version 1.3.7-1 272s autopkgtest [02:26:58]: build not needed 272s autopkgtest [02:26:58]: test run-unit-test: preparing testbed 278s Reading package lists... 278s Building dependency tree... 278s Reading state information... 278s Starting pkgProblemResolver with broken count: 0 278s Starting 2 pkgProblemResolver with broken count: 0 278s Done 279s The following additional packages will be installed: 279s freebayes libdeflate0 libdisorder0 libfastahack0 libfml0 libhts3 279s libhtscodecs2 libjsoncpp25 libseqlib2 libsmithwaterman0 libssw0 libtabixpp0 279s libvcflib2 libwfa2-0 279s Recommended packages: 279s parallel 279s The following NEW packages will be installed: 279s autopkgtest-satdep freebayes libdeflate0 libdisorder0 libfastahack0 libfml0 279s libhts3 libhtscodecs2 libjsoncpp25 libseqlib2 libsmithwaterman0 libssw0 279s libtabixpp0 libvcflib2 libwfa2-0 279s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 279s Need to get 2655 kB/2656 kB of archives. 279s After this operation, 6323 kB of additional disk space will be used. 279s Get:1 /tmp/autopkgtest.Uru7GE/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 279s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 libfml0 arm64 0.1+git20190320.b499514-1 [64.7 kB] 279s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 279s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 279s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 280s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 280s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libssw0 arm64 1.1-14 [21.1 kB] 280s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 libseqlib2 arm64 1.2.0+dfsg-11 [165 kB] 280s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libtabixpp0 arm64 1.1.2-2 [9636 B] 280s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4 [4578 B] 280s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastahack0 arm64 1.0.0+dfsg-11 [26.8 kB] 280s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12 [35.9 kB] 280s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libwfa2-0 arm64 2.3.3-2 [59.1 kB] 280s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libvcflib2 arm64 1.0.9+dfsg1-3 [183 kB] 280s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 freebayes arm64 1.3.7-1 [1466 kB] 280s Fetched 2655 kB in 1s (3808 kB/s) 280s Selecting previously unselected package libfml0:arm64. 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 280s Preparing to unpack .../00-libfml0_0.1+git20190320.b499514-1_arm64.deb ... 280s Unpacking libfml0:arm64 (0.1+git20190320.b499514-1) ... 280s Selecting previously unselected package libdeflate0:arm64. 280s Preparing to unpack .../01-libdeflate0_1.19-1_arm64.deb ... 280s Unpacking libdeflate0:arm64 (1.19-1) ... 280s Selecting previously unselected package libhtscodecs2:arm64. 280s Preparing to unpack .../02-libhtscodecs2_1.6.0-1_arm64.deb ... 280s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 280s Selecting previously unselected package libhts3:arm64. 280s Preparing to unpack .../03-libhts3_1.18+ds-1_arm64.deb ... 280s Unpacking libhts3:arm64 (1.18+ds-1) ... 280s Selecting previously unselected package libjsoncpp25:arm64. 280s Preparing to unpack .../04-libjsoncpp25_1.9.5-6_arm64.deb ... 280s Unpacking libjsoncpp25:arm64 (1.9.5-6) ... 280s Selecting previously unselected package libssw0:arm64. 280s Preparing to unpack .../05-libssw0_1.1-14_arm64.deb ... 280s Unpacking libssw0:arm64 (1.1-14) ... 280s Selecting previously unselected package libseqlib2:arm64. 280s Preparing to unpack .../06-libseqlib2_1.2.0+dfsg-11_arm64.deb ... 280s Unpacking libseqlib2:arm64 (1.2.0+dfsg-11) ... 280s Selecting previously unselected package libtabixpp0:arm64. 280s Preparing to unpack .../07-libtabixpp0_1.1.2-2_arm64.deb ... 280s Unpacking libtabixpp0:arm64 (1.1.2-2) ... 280s Selecting previously unselected package libdisorder0:arm64. 280s Preparing to unpack .../08-libdisorder0_0.0.2+git20130809.8062ee1-4_arm64.deb ... 280s Unpacking libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4) ... 280s Selecting previously unselected package libfastahack0:arm64. 280s Preparing to unpack .../09-libfastahack0_1.0.0+dfsg-11_arm64.deb ... 280s Unpacking libfastahack0:arm64 (1.0.0+dfsg-11) ... 280s Selecting previously unselected package libsmithwaterman0:arm64. 280s Preparing to unpack .../10-libsmithwaterman0_0.0+git20160702.2610e25-12_arm64.deb ... 280s Unpacking libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12) ... 280s Selecting previously unselected package libwfa2-0:arm64. 280s Preparing to unpack .../11-libwfa2-0_2.3.3-2_arm64.deb ... 280s Unpacking libwfa2-0:arm64 (2.3.3-2) ... 280s Selecting previously unselected package libvcflib2:arm64. 280s Preparing to unpack .../12-libvcflib2_1.0.9+dfsg1-3_arm64.deb ... 280s Unpacking libvcflib2:arm64 (1.0.9+dfsg1-3) ... 280s Selecting previously unselected package freebayes. 280s Preparing to unpack .../13-freebayes_1.3.7-1_arm64.deb ... 280s Unpacking freebayes (1.3.7-1) ... 281s Selecting previously unselected package autopkgtest-satdep. 281s Preparing to unpack .../14-1-autopkgtest-satdep.deb ... 281s Unpacking autopkgtest-satdep (0) ... 281s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 281s Setting up libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4) ... 281s Setting up libwfa2-0:arm64 (2.3.3-2) ... 281s Setting up libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12) ... 281s Setting up libdeflate0:arm64 (1.19-1) ... 281s Setting up libfml0:arm64 (0.1+git20190320.b499514-1) ... 281s Setting up libfastahack0:arm64 (1.0.0+dfsg-11) ... 281s Setting up libjsoncpp25:arm64 (1.9.5-6) ... 281s Setting up libssw0:arm64 (1.1-14) ... 281s Setting up libhts3:arm64 (1.18+ds-1) ... 281s Setting up libtabixpp0:arm64 (1.1.2-2) ... 281s Setting up libseqlib2:arm64 (1.2.0+dfsg-11) ... 281s Setting up libvcflib2:arm64 (1.0.9+dfsg1-3) ... 281s Setting up freebayes (1.3.7-1) ... 281s Setting up autopkgtest-satdep (0) ... 281s Processing triggers for man-db (2.12.0-3) ... 281s Processing triggers for libc-bin (2.39-0ubuntu6) ... 284s (Reading database ... 75628 files and directories currently installed.) 284s Removing autopkgtest-satdep (0) ... 285s autopkgtest [02:27:11]: test run-unit-test: [----------------------- 285s .: 285s README.test_data 285s data 285s freebayes-env.yaml 285s performance 285s pipeline.sh 285s regression 285s runner.sh 285s snakemake-freebayes-parallel.smk 285s splice 285s t 285s targets.bed 285s test.alt 285s test.bam 285s test.bam.bai 285s test.bed 285s test.ref 285s test.ref.fai 285s test.vcf 285s tiny 285s 285s ./data: 285s targets.bed 285s test.alt 285s test.bam 285s test.bam.bai 285s test.bed 285s test.ref 285s test.ref.fai 285s test.vcf 285s 285s ./performance: 285s benchmark.md 285s 285s ./regression: 285s NA12878.chr22.tiny.vcf 285s README.md 285s 285s ./splice: 285s 1:883884-887618.bam 285s 1:883884-887618.bam.bai 285s 1:883884-887618.fa 285s 1:883884-887618.fa.fai 285s 285s ./t: 285s 00_region_and_target_handling.t 285s 01_call_variants.t 285s 01b_call_variants.t 285s 02_multi_bam.t 285s 03_reference_bases.t 285s 285s ./tiny: 285s 1read.bam 285s 1read.bam.bai 285s NA12878.chr22.tiny.bam 285s NA12878.chr22.tiny.bam.bai 285s NA12878.chr22.tiny.cram 285s NA12878.chr22.tiny.giab.vcf 285s NA12878.chr22.tiny.hla.bam 285s NA12878.chr22.tiny.hla.bam.bai 285s hla.fa 285s hla.fa.fai 285s hla.vcf.gz 285s hla.vcf.gz.tbi 285s q with spaces.fa 285s q with spaces.fa.fai 285s q with spaces.regions 285s q.fa 285s q.fa.fai 285s q.regions 285s q.vcf.gz 285s q.vcf.gz.tbi 285s q_spiked.vcf.gz 285s q_spiked.vcf.gz.tbi 285s Test 1 285s Passed 285s 285s Test 2 285s Passed 285s 285s Test 3 285s Passed 285s 285s Test 4 285s Passed 285s 285s Test 5 285s Passed 285s 285s Test 6 285s Passed 285s 285s Test 7 285s Passed 285s 285s Test 8 285s Passed 285s 285s Test 9 285s Passed 285s 285s Test 10 285s Passed 285s 285s Test 11 286s Passed 286s 286s Test 12 286s Passed 286s 286s Test 13 286s Passed 286s 286s Test 14 286s Passed 286s 286s Test 15 286s Passed 286s 286s Test 16 287s Passed 287s 287s Test 17 287s Passed 287s 287s Test 18 287s Passed 287s 287s Test 19 287s Passed 287s 287s Test 20 287s Passed 287s 287s Test 21 288s Passed 288s 288s Test 22 288s Passed 288s 288s Test 23 288s Passed 288s 288s Test 24 288s Passed 288s 288s Test 25 288s Passed 288s 288s Test 26 289s Passed 289s 289s autopkgtest [02:27:15]: test run-unit-test: -----------------------] 289s run-unit-test PASS 289s autopkgtest [02:27:15]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 290s autopkgtest [02:27:16]: @@@@@@@@@@@@@@@@@@@@ summary 290s run-unit-test PASS 304s Creating nova instance adt-noble-arm64-freebayes-20240324-020602-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240323.img (UUID 5063c5cd-2683-4ea1-9e65-62351adfb1a7)...