0s autopkgtest [16:57:08]: starting date and time: 2024-03-16 16:57:08+0000 0s autopkgtest [16:57:08]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [16:57:08]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0dab44mu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:hdf5,src:curl,src:libpsl,src:mpich,src:openmpi,src:openssl,src:orthanc-python,src:pmix --apt-upgrade fast5 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=hdf5/1.10.10+repack-3.1ubuntu3 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 mpich/4.2.0-5build1 openmpi/4.1.6-6ubuntu1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-fast5-20240316-165708-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 141s autopkgtest [16:59:29]: testbed dpkg architecture: arm64 141s autopkgtest [16:59:29]: testbed apt version: 2.7.12 141s autopkgtest [16:59:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 141s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 142s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 144s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 144s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 144s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 144s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 144s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 144s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 144s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 144s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 145s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 145s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 145s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 147s Fetched 9063 kB in 4s (2092 kB/s) 147s Reading package lists... 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Calculating upgrade... 153s The following packages will be REMOVED: 153s libssl3 153s The following NEW packages will be installed: 153s libssl3t64 153s The following packages have been kept back: 153s curl 153s The following packages will be upgraded: 153s openssl ubuntu-minimal ubuntu-standard 153s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 153s Need to get 2775 kB of archives. 153s After this operation, 72.7 kB of additional disk space will be used. 153s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 154s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 154s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 154s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 155s Fetched 2775 kB in 1s (3413 kB/s) 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 156s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 156s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 156s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 156s wget depends on libssl3 (>= 3.0.0). 156s u-boot-tools depends on libssl3 (>= 3.0.0). 156s tnftp depends on libssl3 (>= 3.0.0). 156s tcpdump depends on libssl3 (>= 3.0.0). 156s systemd-resolved depends on libssl3 (>= 3.0.0). 156s systemd depends on libssl3 (>= 3.0.0). 156s sudo depends on libssl3 (>= 3.0.0). 156s sbsigntool depends on libssl3 (>= 3.0.0). 156s rsync depends on libssl3 (>= 3.0.0). 156s python3-cryptography depends on libssl3 (>= 3.0.0). 156s openssh-server depends on libssl3 (>= 3.0.10). 156s openssh-client depends on libssl3 (>= 3.0.10). 156s mtd-utils depends on libssl3 (>= 3.0.0). 156s mokutil depends on libssl3 (>= 3.0.0). 156s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 156s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 156s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 156s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 156s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 156s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 156s libnvme1 depends on libssl3 (>= 3.0.0). 156s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 156s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 156s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 156s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 156s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 156s kmod depends on libssl3 (>= 3.0.0). 156s dhcpcd-base depends on libssl3 (>= 3.0.0). 156s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 156s 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 156s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 156s Selecting previously unselected package libssl3t64:arm64. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 156s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 156s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 156s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 156s Unpacking ubuntu-minimal (1.536) over (1.535) ... 156s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 156s Unpacking ubuntu-standard (1.536) over (1.535) ... 157s Setting up ubuntu-minimal (1.536) ... 157s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 157s Setting up ubuntu-standard (1.536) ... 157s Setting up openssl (3.0.13-0ubuntu1) ... 157s Processing triggers for man-db (2.12.0-3) ... 157s Processing triggers for libc-bin (2.39-0ubuntu2) ... 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 159s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 159s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 159s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 159s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 161s Reading package lists... 161s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Calculating upgrade... 162s The following packages have been kept back: 162s curl 162s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 166s autopkgtest [16:59:54]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 166s autopkgtest [16:59:54]: @@@@@@@@@@@@@@@@@@@@ apt-source fast5 179s Get:1 http://ftpmaster.internal/ubuntu noble/universe fast5 0.6.5-7build3 (dsc) [2248 B] 179s Get:2 http://ftpmaster.internal/ubuntu noble/universe fast5 0.6.5-7build3 (tar) [93.6 kB] 179s Get:3 http://ftpmaster.internal/ubuntu noble/universe fast5 0.6.5-7build3 (diff) [5652 B] 180s gpgv: Signature made Thu Nov 2 08:51:29 2023 UTC 180s gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 180s gpgv: issuer "doko@ubuntu.com" 180s gpgv: Can't check signature: No public key 180s dpkg-source: warning: cannot verify inline signature for ./fast5_0.6.5-7build3.dsc: no acceptable signature found 181s autopkgtest [17:00:09]: testing package fast5 version 0.6.5-7build3 181s autopkgtest [17:00:09]: build not needed 182s autopkgtest [17:00:10]: test command1: preparing testbed 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 186s Starting pkgProblemResolver with broken count: 0 186s Starting 2 pkgProblemResolver with broken count: 0 186s Done 186s The following additional packages will be installed: 186s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 186s curl g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 186s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu hdf5-helpers libaec-dev 186s libaec0 libasan8 libatomic1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 186s libcurl4-openssl-dev libcurl4t64 libfast5-dev libgcc-13-dev libgfortran5 186s libgomp1 libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev 186s libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 186s libhdf5-hl-fortran-100t64 libhwasan0 libisl23 libitm1 libjpeg-dev 186s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblsan0 libmpc3 186s libnsl-dev libpsl5t64 libssl-dev libstdc++-13-dev libsz2 libtirpc-dev 186s libtsan2 libubsan1 linux-libc-dev rpcsvc-proto zlib1g-dev 186s Suggested packages: 186s cpp-doc gcc-13-locales cpp-13-doc gcc-13-doc gcc-multilib manpages-dev 186s autoconf automake libtool flex bison gdb gcc-doc gdb-aarch64-linux-gnu 186s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 186s libssh2-1-dev pkg-config libhdf5-doc libssl-doc libstdc++-13-doc 186s Recommended packages: 186s manpages manpages-dev libc-devtools 186s The following packages will be REMOVED: 186s libcurl4 libpsl5 186s The following NEW packages will be installed: 186s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 186s cpp-aarch64-linux-gnu g++ g++-13 g++-13-aarch64-linux-gnu 186s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 186s gcc-aarch64-linux-gnu hdf5-helpers libaec-dev libaec0 libasan8 libatomic1 186s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libcurl4-openssl-dev 186s libcurl4t64 libfast5-dev libgcc-13-dev libgfortran5 libgomp1 186s libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 186s libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 186s libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 186s libjpeg8-dev liblsan0 libmpc3 libnsl-dev libpsl5t64 libssl-dev 186s libstdc++-13-dev libsz2 libtirpc-dev libtsan2 libubsan1 linux-libc-dev 186s rpcsvc-proto zlib1g-dev 186s The following packages will be upgraded: 186s curl 186s 1 upgraded, 57 newly installed, 2 to remove and 0 not upgraded. 186s Need to get 71.6 MB/71.6 MB of archives. 186s After this operation, 263 MB of additional disk space will be used. 186s Get:1 /tmp/autopkgtest.xGggaE/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 186s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 187s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 187s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 187s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 187s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 187s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 187s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 187s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 187s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 187s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 187s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 187s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 187s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 187s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 187s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 187s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 187s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 187s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 187s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 187s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 187s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 187s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 187s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 187s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 187s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 187s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 188s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 188s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 188s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 188s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 188s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 188s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 188s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 188s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 188s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 188s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 188s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 hdf5-helpers arm64 1.10.10+repack-3.1ubuntu3 [15.8 kB] 188s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 188s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 188s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 188s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [1192 kB] 188s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 188s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-3.1ubuntu3 [86.3 kB] 188s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu3 [55.8 kB] 188s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-3.1ubuntu3 [31.0 kB] 188s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [120 kB] 188s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-3.1ubuntu3 [11.0 kB] 188s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 188s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 188s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 188s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 189s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 189s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 189s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 189s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 189s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-dev arm64 1.10.10+repack-3.1ubuntu3 [3038 kB] 189s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libfast5-dev all 0.6.5-7build3 [50.3 kB] 190s Fetched 71.6 MB in 2s (31.1 MB/s) 190s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 190s wget depends on libpsl5 (>= 0.16.0). 190s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 190s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 190s 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 190s Removing libpsl5:arm64 (0.21.2-1build1) ... 190s Selecting previously unselected package libpsl5t64:arm64. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 190s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 190s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 190s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 190s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 190s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 190s Selecting previously unselected package libcurl4t64:arm64. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 190s Preparing to unpack .../00-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 190s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 190s Selecting previously unselected package libc-dev-bin. 190s Preparing to unpack .../01-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 190s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 190s Selecting previously unselected package linux-libc-dev:arm64. 190s Preparing to unpack .../02-linux-libc-dev_6.8.0-11.11_arm64.deb ... 190s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 191s Selecting previously unselected package libcrypt-dev:arm64. 191s Preparing to unpack .../03-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 191s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 191s Selecting previously unselected package libtirpc-dev:arm64. 191s Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 191s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 191s Selecting previously unselected package libnsl-dev:arm64. 191s Preparing to unpack .../05-libnsl-dev_1.3.0-3_arm64.deb ... 191s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 191s Selecting previously unselected package rpcsvc-proto. 191s Preparing to unpack .../06-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 191s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 191s Selecting previously unselected package libc6-dev:arm64. 191s Preparing to unpack .../07-libc6-dev_2.39-0ubuntu2_arm64.deb ... 191s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 192s Selecting previously unselected package libisl23:arm64. 192s Preparing to unpack .../08-libisl23_0.26-3_arm64.deb ... 193s Unpacking libisl23:arm64 (0.26-3) ... 193s Selecting previously unselected package libmpc3:arm64. 193s Preparing to unpack .../09-libmpc3_1.3.1-1_arm64.deb ... 193s Unpacking libmpc3:arm64 (1.3.1-1) ... 193s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 193s Preparing to unpack .../10-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 193s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package cpp-13. 193s Preparing to unpack .../11-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 193s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package cpp-aarch64-linux-gnu. 193s Preparing to unpack .../12-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 193s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 193s Selecting previously unselected package cpp. 193s Preparing to unpack .../13-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 193s Unpacking cpp (4:13.2.0-7ubuntu1) ... 193s Selecting previously unselected package libcc1-0:arm64. 193s Preparing to unpack .../14-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libgomp1:arm64. 193s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libitm1:arm64. 193s Preparing to unpack .../16-libitm1_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libatomic1:arm64. 193s Preparing to unpack .../17-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libasan8:arm64. 193s Preparing to unpack .../18-libasan8_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package liblsan0:arm64. 193s Preparing to unpack .../19-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libtsan2:arm64. 193s Preparing to unpack .../20-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libubsan1:arm64. 193s Preparing to unpack .../21-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libhwasan0:arm64. 193s Preparing to unpack .../22-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libgcc-13-dev:arm64. 193s Preparing to unpack .../23-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 193s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 193s Preparing to unpack .../24-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 193s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package gcc-13. 194s Preparing to unpack .../25-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gcc-aarch64-linux-gnu. 194s Preparing to unpack .../26-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package gcc. 194s Preparing to unpack .../27-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking gcc (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package libstdc++-13-dev:arm64. 194s Preparing to unpack .../28-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package g++-13-aarch64-linux-gnu. 194s Preparing to unpack .../29-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package g++-13. 194s Preparing to unpack .../30-g++-13_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking g++-13 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package g++-aarch64-linux-gnu. 194s Preparing to unpack .../31-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package g++. 194s Preparing to unpack .../32-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking g++ (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package build-essential. 194s Preparing to unpack .../33-build-essential_12.10ubuntu1_arm64.deb ... 194s Unpacking build-essential (12.10ubuntu1) ... 194s Selecting previously unselected package hdf5-helpers. 194s Preparing to unpack .../34-hdf5-helpers_1.10.10+repack-3.1ubuntu3_arm64.deb ... 194s Unpacking hdf5-helpers (1.10.10+repack-3.1ubuntu3) ... 194s Selecting previously unselected package libaec0:arm64. 194s Preparing to unpack .../35-libaec0_1.1.2-1_arm64.deb ... 194s Unpacking libaec0:arm64 (1.1.2-1) ... 194s Selecting previously unselected package libcurl4-openssl-dev:arm64. 194s Preparing to unpack .../36-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 194s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 194s Selecting previously unselected package libsz2:arm64. 194s Preparing to unpack .../37-libsz2_1.1.2-1_arm64.deb ... 194s Unpacking libsz2:arm64 (1.1.2-1) ... 194s Selecting previously unselected package libhdf5-103-1t64:arm64. 194s Preparing to unpack .../38-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 194s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 194s Selecting previously unselected package libgfortran5:arm64. 194s Preparing to unpack .../39-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 194s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 194s Selecting previously unselected package libhdf5-fortran-102t64:arm64. 194s Preparing to unpack .../40-libhdf5-fortran-102t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 194s Unpacking libhdf5-fortran-102t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 195s Selecting previously unselected package libhdf5-hl-100t64:arm64. 195s Preparing to unpack .../41-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 195s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 195s Selecting previously unselected package libhdf5-hl-fortran-100t64:arm64. 195s Preparing to unpack .../42-libhdf5-hl-fortran-100t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 195s Unpacking libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 195s Selecting previously unselected package libhdf5-cpp-103-1t64:arm64. 195s Preparing to unpack .../43-libhdf5-cpp-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 195s Unpacking libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 195s Selecting previously unselected package libhdf5-hl-cpp-100t64:arm64. 195s Preparing to unpack .../44-libhdf5-hl-cpp-100t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 195s Unpacking libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 195s Selecting previously unselected package zlib1g-dev:arm64. 195s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 195s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 195s Selecting previously unselected package libjpeg-turbo8:arm64. 195s Preparing to unpack .../46-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 195s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 195s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 196s Preparing to unpack .../47-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 196s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 196s Selecting previously unselected package libjpeg8:arm64. 196s Preparing to unpack .../48-libjpeg8_8c-2ubuntu11_arm64.deb ... 196s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 196s Selecting previously unselected package libjpeg8-dev:arm64. 196s Preparing to unpack .../49-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 196s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 196s Selecting previously unselected package libjpeg-dev:arm64. 196s Preparing to unpack .../50-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 196s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 196s Selecting previously unselected package libaec-dev:arm64. 196s Preparing to unpack .../51-libaec-dev_1.1.2-1_arm64.deb ... 196s Unpacking libaec-dev:arm64 (1.1.2-1) ... 196s Selecting previously unselected package libssl-dev:arm64. 196s Preparing to unpack .../52-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 196s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 196s Selecting previously unselected package libhdf5-dev. 196s Preparing to unpack .../53-libhdf5-dev_1.10.10+repack-3.1ubuntu3_arm64.deb ... 196s Unpacking libhdf5-dev (1.10.10+repack-3.1ubuntu3) ... 196s Selecting previously unselected package libfast5-dev. 196s Preparing to unpack .../54-libfast5-dev_0.6.5-7build3_all.deb ... 196s Unpacking libfast5-dev (0.6.5-7build3) ... 196s Selecting previously unselected package autopkgtest-satdep. 196s Preparing to unpack .../55-1-autopkgtest-satdep.deb ... 196s Unpacking autopkgtest-satdep (0) ... 196s Setting up hdf5-helpers (1.10.10+repack-3.1ubuntu3) ... 196s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 196s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 196s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libaec0:arm64 (1.1.2-1) ... 196s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 196s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 196s Setting up libssl-dev:arm64 (3.0.13-0ubuntu1) ... 196s Setting up libmpc3:arm64 (1.3.1-1) ... 196s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 196s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libnsl-dev:arm64 (1.3.0-3) ... 196s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 196s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libisl23:arm64 (0.26-3) ... 196s Setting up libc-dev-bin (2.39-0ubuntu2) ... 196s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 196s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libsz2:arm64 (1.1.2-1) ... 196s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 196s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 196s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 196s Setting up libaec-dev:arm64 (1.1.2-1) ... 196s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Setting up libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 196s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 196s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 196s Setting up curl (8.5.0-2ubuntu7) ... 196s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 196s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 196s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 196s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 196s Setting up cpp-13 (13.2.0-17ubuntu2) ... 196s Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 196s Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 196s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up gcc-13 (13.2.0-17ubuntu2) ... 196s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 196s Setting up cpp (4:13.2.0-7ubuntu1) ... 196s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 196s Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 196s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Setting up g++-13 (13.2.0-17ubuntu2) ... 196s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 196s Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 196s Setting up gcc (4:13.2.0-7ubuntu1) ... 196s Setting up libhdf5-dev (1.10.10+repack-3.1ubuntu3) ... 196s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 196s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Setting up libfast5-dev (0.6.5-7build3) ... 196s Setting up g++ (4:13.2.0-7ubuntu1) ... 196s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 196s Setting up build-essential (12.10ubuntu1) ... 196s Setting up autopkgtest-satdep (0) ... 196s Processing triggers for man-db (2.12.0-3) ... 197s Processing triggers for libc-bin (2.39-0ubuntu2) ... 201s (Reading database ... 78095 files and directories currently installed.) 201s Removing autopkgtest-satdep (0) ... 202s autopkgtest [17:00:30]: test command1: cp /usr/share/doc/libfast5-dev/examples/* $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && make FAST5_DIR=/usr/include HDF5_INCLUDE_DIR=/usr/include/hdf5/serial HDF5_LIB_DIR=/usr/lib/$(gcc -print-multiarch)/hdf5/serial 202s autopkgtest [17:00:30]: test command1: [----------------------- 202s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5ls f5ls.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 211s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5ls-full f5ls-full.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 220s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o hdf5-mod hdf5-mod.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 225s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5-mod f5-mod.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 232s autopkgtest [17:01:00]: test command1: -----------------------] 233s autopkgtest [17:01:01]: test command1: - - - - - - - - - - results - - - - - - - - - - 233s command1 PASS 233s autopkgtest [17:01:01]: test command2: preparing testbed 375s autopkgtest [17:03:23]: testbed dpkg architecture: arm64 375s autopkgtest [17:03:23]: testbed apt version: 2.7.12 375s autopkgtest [17:03:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 376s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 376s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 376s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 376s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 376s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 377s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 378s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 378s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 378s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 378s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 378s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 378s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 378s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 380s Fetched 9063 kB in 3s (2887 kB/s) 380s Reading package lists... 383s Reading package lists... 383s Building dependency tree... 383s Reading state information... 384s Calculating upgrade... 384s The following packages will be REMOVED: 384s libssl3 384s The following NEW packages will be installed: 384s libssl3t64 384s The following packages have been kept back: 384s curl 384s The following packages will be upgraded: 384s openssl ubuntu-minimal ubuntu-standard 384s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 384s Need to get 2775 kB of archives. 384s After this operation, 72.7 kB of additional disk space will be used. 384s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 385s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 385s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 385s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 386s Fetched 2775 kB in 1s (3448 kB/s) 386s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 386s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 386s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 386s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 386s wget depends on libssl3 (>= 3.0.0). 386s u-boot-tools depends on libssl3 (>= 3.0.0). 386s tnftp depends on libssl3 (>= 3.0.0). 386s tcpdump depends on libssl3 (>= 3.0.0). 386s systemd-resolved depends on libssl3 (>= 3.0.0). 386s systemd depends on libssl3 (>= 3.0.0). 386s sudo depends on libssl3 (>= 3.0.0). 386s sbsigntool depends on libssl3 (>= 3.0.0). 386s rsync depends on libssl3 (>= 3.0.0). 386s python3-cryptography depends on libssl3 (>= 3.0.0). 386s openssh-server depends on libssl3 (>= 3.0.10). 386s openssh-client depends on libssl3 (>= 3.0.10). 386s mtd-utils depends on libssl3 (>= 3.0.0). 386s mokutil depends on libssl3 (>= 3.0.0). 386s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 386s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 386s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 386s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 386s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 386s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 386s libnvme1 depends on libssl3 (>= 3.0.0). 386s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 386s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 386s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 386s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 386s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 386s kmod depends on libssl3 (>= 3.0.0). 386s dhcpcd-base depends on libssl3 (>= 3.0.0). 386s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 386s 386s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 386s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 386s Selecting previously unselected package libssl3t64:arm64. 386s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 386s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 386s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 387s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 387s Unpacking ubuntu-minimal (1.536) over (1.535) ... 387s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 387s Unpacking ubuntu-standard (1.536) over (1.535) ... 387s Setting up ubuntu-minimal (1.536) ... 387s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 387s Setting up ubuntu-standard (1.536) ... 387s Setting up openssl (3.0.13-0ubuntu1) ... 387s Processing triggers for man-db (2.12.0-3) ... 387s Processing triggers for libc-bin (2.39-0ubuntu2) ... 388s Reading package lists... 388s Building dependency tree... 388s Reading state information... 389s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 389s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 389s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 389s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 389s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 391s Reading package lists... 391s Reading package lists... 392s Building dependency tree... 392s Reading state information... 392s Calculating upgrade... 392s The following packages have been kept back: 392s curl 393s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 393s Reading package lists... 393s Building dependency tree... 393s Reading state information... 394s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 398s Reading package lists... 398s Building dependency tree... 398s Reading state information... 399s Starting pkgProblemResolver with broken count: 0 399s Starting 2 pkgProblemResolver with broken count: 0 399s Done 399s The following additional packages will be installed: 399s libaec0 libhdf5-103-1 libsz2 python3-fast5 400s The following NEW packages will be installed: 400s autopkgtest-satdep libaec0 libhdf5-103-1 libsz2 python3-fast5 400s 0 upgraded, 5 newly installed, 0 to remove and 1 not upgraded. 400s Need to get 1519 kB/1520 kB of archives. 400s After this operation, 5742 kB of additional disk space will be used. 400s Get:1 /tmp/autopkgtest.xGggaE/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 400s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 400s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 400s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 400s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-fast5 arm64 0.6.5-7build3 [303 kB] 401s Fetched 1519 kB in 1s (2087 kB/s) 401s Selecting previously unselected package libaec0:arm64. 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 401s Preparing to unpack .../libaec0_1.1.2-1_arm64.deb ... 401s Unpacking libaec0:arm64 (1.1.2-1) ... 401s Selecting previously unselected package libsz2:arm64. 401s Preparing to unpack .../libsz2_1.1.2-1_arm64.deb ... 401s Unpacking libsz2:arm64 (1.1.2-1) ... 401s Selecting previously unselected package libhdf5-103-1:arm64. 401s Preparing to unpack .../libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 401s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 401s Selecting previously unselected package python3-fast5:arm64. 401s Preparing to unpack .../python3-fast5_0.6.5-7build3_arm64.deb ... 401s Unpacking python3-fast5:arm64 (0.6.5-7build3) ... 401s Selecting previously unselected package autopkgtest-satdep. 401s Preparing to unpack .../2-autopkgtest-satdep.deb ... 401s Unpacking autopkgtest-satdep (0) ... 401s Setting up libaec0:arm64 (1.1.2-1) ... 401s Setting up libsz2:arm64 (1.1.2-1) ... 401s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 401s Setting up python3-fast5:arm64 (0.6.5-7build3) ... 401s Setting up autopkgtest-satdep (0) ... 401s Processing triggers for libc-bin (2.39-0ubuntu2) ... 404s (Reading database ... 74791 files and directories currently installed.) 404s Removing autopkgtest-satdep (0) ... 406s autopkgtest [17:03:54]: test command2: python3 -c "import fast5" 406s autopkgtest [17:03:54]: test command2: [----------------------- 407s autopkgtest [17:03:55]: test command2: -----------------------] 407s command2 PASS 407s autopkgtest [17:03:55]: test command2: - - - - - - - - - - results - - - - - - - - - - 408s autopkgtest [17:03:56]: @@@@@@@@@@@@@@@@@@@@ summary 408s command1 PASS 408s command2 PASS 419s Creating nova instance adt-noble-arm64-fast5-20240316-165708-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)... 419s Creating nova instance adt-noble-arm64-fast5-20240316-165708-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...