0s autopkgtest [12:11:39]: starting date and time: 2024-03-18 12:11:39+0000
  0s autopkgtest [12:11:39]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [12:11:39]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xv2_uzgw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:openmpi,src:ampliconnoise,src:eztrace,src:gatb-core,src:gyoto,src:murasaki,src:pmix --apt-upgrade elkcode --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openmpi/4.1.6-7ubuntu1 ampliconnoise/1.29-10build2 eztrace/2.1-6 gatb-core/1.4.2+dfsg-13build1 gyoto/2.0.2-1.1build2 murasaki/1.68.6-13build5 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-10.secgroup --name adt-noble-arm64-elkcode-20240318-121139-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
154s autopkgtest [12:14:13]: testbed dpkg architecture: arm64
155s autopkgtest [12:14:14]: testbed apt version: 2.7.12
155s autopkgtest [12:14:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup
156s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
156s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
156s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3727 kB]
158s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB]
158s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.0 kB]
158s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [654 kB]
158s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
158s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
158s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
158s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4102 kB]
159s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
159s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB]
159s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
160s Fetched 9245 kB in 3s (2704 kB/s)
161s Reading package lists...
163s Reading package lists...
163s Building dependency tree...
163s Reading state information...
164s Calculating upgrade...
164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
164s Reading package lists...
165s Building dependency tree...
165s Reading state information...
165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
166s sh: Attempting to set up Debian/Ubuntu apt sources automatically
166s sh: Distribution appears to be Ubuntu
166s Reading package lists...
167s Building dependency tree...
167s Reading state information...
167s eatmydata is already the newest version (131-1).
167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
167s Reading package lists...
168s Building dependency tree...
168s Reading state information...
168s dbus is already the newest version (1.14.10-4ubuntu1).
168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
168s Reading package lists...
168s Building dependency tree...
168s Reading state information...
169s rng-tools-debian is already the newest version (2.4).
169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
169s Reading package lists...
169s Building dependency tree...
169s Reading state information...
170s The following packages will be REMOVED:
170s   cloud-init* python3-configobj* python3-debconf*
170s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
170s After this operation, 3252 kB disk space will be freed.
170s (Reading database ... 
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(Reading database ... 75850 files and directories currently installed.)
170s Removing cloud-init (24.1.1-0ubuntu1) ...
171s Removing python3-configobj (5.0.8-3) ...
171s Removing python3-debconf (1.5.86) ...
171s Processing triggers for man-db (2.12.0-3) ...
171s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75461 files and directories currently installed.)
171s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
172s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
172s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
172s invoke-rc.d: policy-rc.d denied execution of try-restart.
172s Reading package lists...
172s Building dependency tree...
172s Reading state information...
172s linux-generic is already the newest version (6.8.0-11.11+1).
172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
173s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
173s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
173s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
175s Reading package lists...
175s Reading package lists...
175s Building dependency tree...
175s Reading state information...
176s Calculating upgrade...
176s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
176s Reading package lists...
176s Building dependency tree...
176s Reading state information...
177s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
177s autopkgtest [12:14:36]: rebooting testbed after setup commands that affected boot
333s autopkgtest [12:17:12]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
335s autopkgtest [12:17:14]: @@@@@@@@@@@@@@@@@@@@ apt-source elkcode
338s Get:1 http://ftpmaster.internal/ubuntu noble/universe elkcode 9.2.12-1 (dsc) [2084 B]
338s Get:2 http://ftpmaster.internal/ubuntu noble/universe elkcode 9.2.12-1 (tar) [3299 kB]
338s Get:3 http://ftpmaster.internal/ubuntu noble/universe elkcode 9.2.12-1 (diff) [10.3 kB]
338s gpgv: Signature made Fri Dec 29 15:36:37 2023 UTC
338s gpgv:                using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0
338s gpgv: Can't check signature: No public key
338s dpkg-source: warning: cannot verify inline signature for ./elkcode_9.2.12-1.dsc: no acceptable signature found
339s autopkgtest [12:17:18]: testing package elkcode version 9.2.12-1
339s autopkgtest [12:17:18]: build not needed
340s autopkgtest [12:17:19]: test testsuite.sh: preparing testbed
356s Reading package lists...
356s Building dependency tree...
356s Reading state information...
356s Starting pkgProblemResolver with broken count: 0
357s Starting 2 pkgProblemResolver with broken count: 0
357s Done
357s The following additional packages will be installed:
357s   elk-lapw libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1
357s   libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3
357s   libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins
357s   libhwloc15 liblapack3 libllvm17 libmunge2 libopenmpi3 libpciaccess0 libpmix2
357s   librdmacm1t64 libucx0 libxc9 libxnvctrl0 mpi-default-bin ocl-icd-libopencl1
357s   openmpi-bin openmpi-common
357s Suggested packages:
357s   gnuplot xcrysden libfftw3-bin libfftw3-dev opencl-icd gfortran
357s   | fortran-compiler
357s The following NEW packages will be installed:
357s   autopkgtest-satdep elk-lapw libamd-comgr2 libamdhip64-5 libatomic1 libblas3
357s   libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3
357s   libfftw3-single3 libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1
357s   libhwloc-plugins libhwloc15 liblapack3 libllvm17 libmunge2 libopenmpi3
357s   libpciaccess0 libpmix2 librdmacm1t64 libucx0 libxc9 libxnvctrl0
357s   mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common
357s 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded.
357s Need to get 62.8 MB/62.8 MB of archives.
357s After this operation, 250 MB of additional disk space will be used.
357s Get:1 /tmp/autopkgtest.pPKsVm/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B]
357s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
360s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
360s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB]
361s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-single3 arm64 3.3.10-1ubuntu1 [579 kB]
361s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
361s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
363s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B]
363s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
363s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB]
363s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB]
363s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB]
363s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB]
363s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB]
363s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB]
363s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB]
363s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB]
363s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB]
363s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB]
364s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB]
365s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB]
365s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB]
365s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB]
365s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB]
365s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB]
365s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB]
365s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libxc9 arm64 5.2.3-1ubuntu1 [4109 kB]
365s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB]
365s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB]
365s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B]
365s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 elk-lapw arm64 9.2.12-1 [4109 kB]
366s Fetched 62.8 MB in 8s (7661 kB/s)
366s Selecting previously unselected package libblas3:arm64.
366s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75406 files and directories currently installed.)
366s Preparing to unpack .../00-libblas3_3.12.0-3_arm64.deb ...
366s Unpacking libblas3:arm64 (3.12.0-3) ...
366s Selecting previously unselected package libgomp1:arm64.
366s Preparing to unpack .../01-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
366s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
366s Selecting previously unselected package libfftw3-double3:arm64.
366s Preparing to unpack .../02-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ...
366s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ...
366s Selecting previously unselected package libfftw3-single3:arm64.
366s Preparing to unpack .../03-libfftw3-single3_3.3.10-1ubuntu1_arm64.deb ...
366s Unpacking libfftw3-single3:arm64 (3.3.10-1ubuntu1) ...
366s Selecting previously unselected package libgfortran5:arm64.
366s Preparing to unpack .../04-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
366s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
366s Selecting previously unselected package liblapack3:arm64.
366s Preparing to unpack .../05-liblapack3_3.12.0-3_arm64.deb ...
366s Unpacking liblapack3:arm64 (3.12.0-3) ...
366s Selecting previously unselected package libevent-pthreads-2.1-7:arm64.
366s Preparing to unpack .../06-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ...
366s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ...
366s Selecting previously unselected package libatomic1:arm64.
366s Preparing to unpack .../07-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
366s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
366s Selecting previously unselected package librdmacm1t64:arm64.
366s Preparing to unpack .../08-librdmacm1t64_50.0-2_arm64.deb ...
366s Unpacking librdmacm1t64:arm64 (50.0-2) ...
366s Selecting previously unselected package libfabric1:arm64.
366s Preparing to unpack .../09-libfabric1_1.17.0-3_arm64.deb ...
366s Unpacking libfabric1:arm64 (1.17.0-3) ...
366s Selecting previously unselected package libhwloc15:arm64.
366s Preparing to unpack .../10-libhwloc15_2.10.0-1_arm64.deb ...
366s Unpacking libhwloc15:arm64 (2.10.0-1) ...
366s Selecting previously unselected package libmunge2:arm64.
366s Preparing to unpack .../11-libmunge2_0.5.15-3ubuntu1_arm64.deb ...
366s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ...
366s Selecting previously unselected package libpciaccess0:arm64.
366s Preparing to unpack .../12-libpciaccess0_0.17-3_arm64.deb ...
366s Unpacking libpciaccess0:arm64 (0.17-3) ...
366s Selecting previously unselected package libxnvctrl0:arm64.
366s Preparing to unpack .../13-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ...
366s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ...
366s Selecting previously unselected package ocl-icd-libopencl1:arm64.
366s Preparing to unpack .../14-ocl-icd-libopencl1_2.3.2-1_arm64.deb ...
366s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ...
366s Selecting previously unselected package libhwloc-plugins:arm64.
366s Preparing to unpack .../15-libhwloc-plugins_2.10.0-1_arm64.deb ...
366s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ...
366s Selecting previously unselected package libpmix2:arm64.
366s Preparing to unpack .../16-libpmix2_5.0.1-4_arm64.deb ...
366s Unpacking libpmix2:arm64 (5.0.1-4) ...
366s Selecting previously unselected package libllvm17:arm64.
366s Preparing to unpack .../17-libllvm17_1%3a17.0.6-5build1_arm64.deb ...
366s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ...
367s Selecting previously unselected package libamd-comgr2:arm64.
367s Preparing to unpack .../18-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ...
367s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ...
367s Selecting previously unselected package libdrm-amdgpu1:arm64.
367s Preparing to unpack .../19-libdrm-amdgpu1_2.4.120-2_arm64.deb ...
367s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ...
367s Selecting previously unselected package libhsakmt1:arm64.
367s Preparing to unpack .../20-libhsakmt1_5.7.0-1_arm64.deb ...
367s Unpacking libhsakmt1:arm64 (5.7.0-1) ...
367s Selecting previously unselected package libhsa-runtime64-1.
367s Preparing to unpack .../21-libhsa-runtime64-1_5.7.1-1_arm64.deb ...
367s Unpacking libhsa-runtime64-1 (5.7.1-1) ...
367s Selecting previously unselected package libamdhip64-5.
367s Preparing to unpack .../22-libamdhip64-5_5.2.3-12_arm64.deb ...
367s Unpacking libamdhip64-5 (5.2.3-12) ...
367s Selecting previously unselected package libucx0:arm64.
367s Preparing to unpack .../23-libucx0_1.16.0+ds-4_arm64.deb ...
367s Unpacking libucx0:arm64 (1.16.0+ds-4) ...
367s Selecting previously unselected package libopenmpi3:arm64.
367s Preparing to unpack .../24-libopenmpi3_4.1.6-5ubuntu1_arm64.deb ...
367s Unpacking libopenmpi3:arm64 (4.1.6-5ubuntu1) ...
367s Selecting previously unselected package libxc9:arm64.
367s Preparing to unpack .../25-libxc9_5.2.3-1ubuntu1_arm64.deb ...
367s Unpacking libxc9:arm64 (5.2.3-1ubuntu1) ...
368s Selecting previously unselected package openmpi-common.
368s Preparing to unpack .../26-openmpi-common_4.1.6-5ubuntu1_all.deb ...
368s Unpacking openmpi-common (4.1.6-5ubuntu1) ...
368s Selecting previously unselected package openmpi-bin.
368s Preparing to unpack .../27-openmpi-bin_4.1.6-5ubuntu1_arm64.deb ...
368s Unpacking openmpi-bin (4.1.6-5ubuntu1) ...
368s Selecting previously unselected package mpi-default-bin.
368s Preparing to unpack .../28-mpi-default-bin_1.15_arm64.deb ...
368s Unpacking mpi-default-bin (1.15) ...
368s Selecting previously unselected package elk-lapw.
368s Preparing to unpack .../29-elk-lapw_9.2.12-1_arm64.deb ...
368s Unpacking elk-lapw (9.2.12-1) ...
368s Selecting previously unselected package autopkgtest-satdep.
368s Preparing to unpack .../30-1-autopkgtest-satdep.deb ...
368s Unpacking autopkgtest-satdep (0) ...
368s Setting up libpciaccess0:arm64 (0.17-3) ...
368s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
368s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ...
368s Setting up libblas3:arm64 (3.12.0-3) ...
368s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
368s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ...
368s Setting up libhwloc15:arm64 (2.10.0-1) ...
368s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
368s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ...
368s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
368s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ...
368s Setting up openmpi-common (4.1.6-5ubuntu1) ...
368s Setting up librdmacm1t64:arm64 (50.0-2) ...
368s Setting up libllvm17:arm64 (1:17.0.6-5build1) ...
368s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ...
368s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ...
368s Setting up libxc9:arm64 (5.2.3-1ubuntu1) ...
368s Setting up libfabric1:arm64 (1.17.0-3) ...
368s Setting up liblapack3:arm64 (3.12.0-3) ...
368s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
368s Setting up libfftw3-single3:arm64 (3.3.10-1ubuntu1) ...
368s Setting up libhwloc-plugins:arm64 (2.10.0-1) ...
368s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ...
368s Setting up libhsakmt1:arm64 (5.7.0-1) ...
368s Setting up libpmix2:arm64 (5.0.1-4) ...
368s Setting up libhsa-runtime64-1 (5.7.1-1) ...
368s Setting up libamdhip64-5 (5.2.3-12) ...
368s Setting up libucx0:arm64 (1.16.0+ds-4) ...
368s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ...
368s Setting up openmpi-bin (4.1.6-5ubuntu1) ...
368s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
368s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
368s Setting up mpi-default-bin (1.15) ...
368s Setting up elk-lapw (9.2.12-1) ...
368s Setting up autopkgtest-satdep (0) ...
368s Processing triggers for man-db (2.12.0-3) ...
368s Processing triggers for libc-bin (2.39-0ubuntu2) ...
372s (Reading database ... 76507 files and directories currently installed.)
372s Removing autopkgtest-satdep (0) ...
373s autopkgtest [12:17:52]: test testsuite.sh: [-----------------------
374s 
374s Running test in directory test_001...
374s 
374s +---------------------------------+
374s | Elk code version 9.2.12 started |
374s +---------------------------------+
374s 
374s Number of MPI processes :      1
374s Number of OpenMP threads per MPI process :    1
374s Total number of threads (MPI x OpenMP) :      1
374s Maximum OpenMP nesting level :    4
374s Number of OpenMP threads at first nesting level :    1
374s Number of MKL threads :    1
374s 
374s RAM disk enabled
374s 
374s +-----------------------+
374s | Current task :      0 |
374s +-----------------------+
374s Info(checkmt): changed muffin-tin radius of species   3 (Cu) from   2.4000 to   1.9694
374s Info(checkmt): changed muffin-tin radius of species   4 (O) from   1.8000 to   1.4770
374s 
374s Info(findsymcrys): atomic basis shift (lattice) :
374s   0.5000000000      0.5000000000      0.5000000000    
374s See GEOMETRY.OUT for new atomic positions
386s 
386s Warning(gndstate): failed to reach self-consistency after    4 loops
389s 
389s +-----------------------+
389s | Current task :      1 |
389s +-----------------------+
401s 
401s Warning(gndstate): failed to reach self-consistency after    4 loops
404s 
404s +-----------------------+
404s | Current task :    115 |
404s +-----------------------+
407s 
407s Info(writeefg): electric field gradient written to EFG.OUT
407s 
407s +-----------------------+
407s | Current task :    500 |
407s +-----------------------+
407s 
407s Info(testcheck): passed all tests
407s 
407s +------------------+
407s | Elk code stopped |
407s +------------------+
407s  Passed
407s 
407s Running test in directory test_002...
407s 
407s +---------------------------------+
407s | Elk code version 9.2.12 started |
407s +---------------------------------+
407s 
407s Number of MPI processes :      1
407s Number of OpenMP threads per MPI process :    1
407s Total number of threads (MPI x OpenMP) :      1
407s Maximum OpenMP nesting level :    4
407s Number of OpenMP threads at first nesting level :    1
407s Number of MKL threads :    1
407s 
407s RAM disk enabled
407s 
407s +-----------------------+
407s | Current task :      0 |
407s +-----------------------+
407s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3202
408s 
408s Warning(gndstate): failed to reach self-consistency after    5 loops
409s 
409s +-----------------------+
409s | Current task :    500 |
409s +-----------------------+
409s 
409s Info(testcheck): passed all tests
409s 
409s +------------------+
409s | Elk code stopped |
409s +------------------+
409s  Passed
409s 
409s Running test in directory test_003...
409s 
409s +---------------------------------+
409s | Elk code version 9.2.12 started |
409s +---------------------------------+
409s 
409s Number of MPI processes :      1
409s Number of OpenMP threads per MPI process :    1
409s Total number of threads (MPI x OpenMP) :      1
409s Maximum OpenMP nesting level :    4
409s Number of OpenMP threads at first nesting level :    1
409s Number of MKL threads :    1
409s 
409s RAM disk enabled
409s 
409s +-----------------------+
409s | Current task :      0 |
409s +-----------------------+
409s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1436
409s 
409s Info(findsymcrys): atomic basis shift (lattice) :
409s   0.3650000000      0.3650000000      0.3650000000    
409s See GEOMETRY.OUT for new atomic positions
410s 
410s Warning(gndstate): failed to reach self-consistency after   10 loops
410s 
410s +-----------------------+
410s | Current task :    500 |
410s +-----------------------+
410s 
410s Info(testcheck): passed all tests
410s 
410s +------------------+
410s | Elk code stopped |
410s +------------------+
410s  Passed
410s 
410s Running test in directory test_005...
410s 
410s +---------------------------------+
410s | Elk code version 9.2.12 started |
410s +---------------------------------+
410s 
410s Number of MPI processes :      1
410s Number of OpenMP threads per MPI process :    1
410s Total number of threads (MPI x OpenMP) :      1
410s Maximum OpenMP nesting level :    4
410s Number of OpenMP threads at first nesting level :    1
410s Number of MKL threads :    1
410s 
410s RAM disk enabled
410s 
410s +-----------------------+
410s | Current task :      0 |
410s +-----------------------+
410s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3615
411s 
411s Warning(gndstate): failed to reach self-consistency after    5 loops
412s 
412s +-----------------------+
412s | Current task :    500 |
412s +-----------------------+
412s 
412s Info(testcheck): passed all tests
412s 
412s +------------------+
412s | Elk code stopped |
412s +------------------+
412s  Passed
412s 
412s Running test in directory test_007...
412s 
412s +---------------------------------+
412s | Elk code version 9.2.12 started |
412s +---------------------------------+
412s 
412s Number of MPI processes :      1
412s Number of OpenMP threads per MPI process :    1
412s Total number of threads (MPI x OpenMP) :      1
412s Maximum OpenMP nesting level :    4
412s Number of OpenMP threads at first nesting level :    1
412s Number of MKL threads :    1
412s 
412s RAM disk enabled
412s 
412s +-----------------------+
412s | Current task :      0 |
412s +-----------------------+
434s 
434s +-----------------------+
434s | Current task :     15 |
434s +-----------------------+
434s 
434s Info(writelsj):
434s  muffin-tin L, S and J expectation values written to LSJ.OUT
434s 
434s +-----------------------+
434s | Current task :     16 |
434s +-----------------------+
435s 
435s Info(writelsj):
435s  muffin-tin L, S and J expectation values for each k-point and state
435s   in kstlist written to LSJ_KST.OUT
435s 
435s +-----------------------+
435s | Current task :    500 |
435s +-----------------------+
435s 
435s Info(testcheck): passed all tests
435s 
435s +------------------+
435s | Elk code stopped |
435s +------------------+
435s  Passed
435s 
435s Running test in directory test_009...
435s 
435s +---------------------------------+
435s | Elk code version 9.2.12 started |
435s +---------------------------------+
435s 
435s Number of MPI processes :      1
435s Number of OpenMP threads per MPI process :    1
435s Total number of threads (MPI x OpenMP) :      1
435s Maximum OpenMP nesting level :    4
435s Number of OpenMP threads at first nesting level :    1
435s Number of MKL threads :    1
435s 
435s RAM disk enabled
435s 
435s +-----------------------+
435s | Current task :      0 |
435s +-----------------------+
435s Info(checkmt): changed muffin-tin radius of species   1 (B) from   1.8000 to   1.6129
435s Info(checkmt): changed muffin-tin radius of species   2 (N+) from   1.4500 to   1.2993
436s 
436s Warning(gndstate): failed to reach self-consistency after    6 loops
436s 
436s +-----------------------+
436s | Current task :    140 |
436s +-----------------------+
437s Info(elnes):      1 of      8 k-points
437s Info(elnes):      2 of      8 k-points
437s Info(elnes):      3 of      8 k-points
437s Info(elnes):      4 of      8 k-points
437s Info(elnes):      5 of      8 k-points
437s Info(elnes):      6 of      8 k-points
437s Info(elnes):      7 of      8 k-points
437s Info(elnes):      8 of      8 k-points
438s 
438s Info(elnes):
438s  ELNES double differential cross-section written to ELNES.OUT
438s 
438s +-----------------------+
438s | Current task :    500 |
438s +-----------------------+
438s 
438s Info(testcheck): passed all tests
438s 
438s +------------------+
438s | Elk code stopped |
438s +------------------+
438s  Passed
438s 
438s Running test in directory test_010...
438s 
438s +---------------------------------+
438s | Elk code version 9.2.12 started |
438s +---------------------------------+
438s 
438s Number of MPI processes :      1
438s Number of OpenMP threads per MPI process :    1
438s Total number of threads (MPI x OpenMP) :      1
438s Maximum OpenMP nesting level :    4
438s Number of OpenMP threads at first nesting level :    1
438s Number of MKL threads :    1
438s 
438s RAM disk enabled
438s 
438s +-----------------------+
438s | Current task :      0 |
438s +-----------------------+
438s Info(checkmt): changed muffin-tin radius of species   1 (O) from   1.8000 to   0.9906
438s Info(checkmt): changed muffin-tin radius of species   2 (H) from   1.4000 to   0.7704
438s 
438s Warning(linengy): could not find   1 linearisation energies in s.c. loop     1
440s 
440s Warning(gndstate): failed to reach self-consistency after    2 loops
440s 
440s Warning(linengy): could not find   1 linearisation energies in s.c. loop     2
441s 
441s +-----------------------+
441s | Current task :    500 |
441s +-----------------------+
441s 
441s Info(testcheck): passed all tests
441s 
441s +------------------+
441s | Elk code stopped |
441s +------------------+
441s  Passed
441s 
441s Running test in directory test_011...
441s 
441s +---------------------------------+
441s | Elk code version 9.2.12 started |
441s +---------------------------------+
441s 
441s Number of MPI processes :      1
441s Number of OpenMP threads per MPI process :    1
441s Total number of threads (MPI x OpenMP) :      1
441s Maximum OpenMP nesting level :    4
441s Number of OpenMP threads at first nesting level :    1
441s Number of MKL threads :    1
441s 
441s RAM disk enabled
441s 
441s +-----------------------+
441s | Current task :      0 |
441s +-----------------------+
441s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1964
441s 
441s Info(findsymcrys): atomic basis shift (lattice) :
441s   0.3750000000      0.3750000000      0.3750000000    
441s See GEOMETRY.OUT for new atomic positions
442s 
442s Warning(gndstate): failed to reach self-consistency after    2 loops
442s 
442s +-----------------------+
442s | Current task :      5 |
442s +-----------------------+
442s 
442s Info(genkmat):      1 of      2 k-points
442s Info(genkmat):      2 of      2 k-points
442s Info(hartfock): self-consistent loop number :    1
442s Info(eveqnhf):      1 of      2 k-points
443s Info(eveqnhf):      2 of      2 k-points
443s Info(hartfock): self-consistent loop number :    2
443s Info(eveqnhf):      1 of      2 k-points
444s Info(eveqnhf):      2 of      2 k-points
444s Info(exxengy):      1 of      2 k-points
445s Info(exxengy):      2 of      2 k-points
445s 
445s +-----------------------+
445s | Current task :    500 |
445s +-----------------------+
445s 
445s Info(testcheck): passed all tests
445s 
445s +------------------+
445s | Elk code stopped |
445s +------------------+
445s  Passed
445s 
445s Running test in directory test_013...
445s 
445s +---------------------------------+
445s | Elk code version 9.2.12 started |
445s +---------------------------------+
445s 
445s Number of MPI processes :      1
445s Number of OpenMP threads per MPI process :    1
445s Total number of threads (MPI x OpenMP) :      1
445s Maximum OpenMP nesting level :    4
445s Number of OpenMP threads at first nesting level :    1
445s Number of MKL threads :    1
445s 
445s RAM disk enabled
445s 
445s +-----------------------+
445s | Current task :      0 |
445s +-----------------------+
445s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3828
445s Info(checkmt): changed muffin-tin radius of species   2 (Al) from   2.2000 to   2.1842
460s 
460s Warning(gndstate): failed to reach self-consistency after    4 loops
470s 
470s +-----------------------+
470s | Current task :    500 |
470s +-----------------------+
470s 
470s Info(testcheck): passed all tests
470s 
470s +------------------+
470s | Elk code stopped |
470s +------------------+
470s  Passed
470s 
470s Running test in directory test_014...
470s 
470s +---------------------------------+
470s | Elk code version 9.2.12 started |
470s +---------------------------------+
470s 
470s Number of MPI processes :      1
470s Number of OpenMP threads per MPI process :    1
470s Total number of threads (MPI x OpenMP) :      1
470s Maximum OpenMP nesting level :    4
470s Number of OpenMP threads at first nesting level :    1
470s Number of MKL threads :    1
470s 
470s RAM disk enabled
470s 
470s +-----------------------+
470s | Current task :      0 |
470s +-----------------------+
470s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1964
470s 
470s Info(findsymcrys): atomic basis shift (lattice) :
470s   0.3750000000      0.3750000000      0.3750000000    
470s See GEOMETRY.OUT for new atomic positions
471s Info(oepvcl):      1 of      8 k-points
472s Info(oepvcl):      2 of      8 k-points
473s Info(oepvcl):      3 of      8 k-points
474s Info(oepvcl):      4 of      8 k-points
475s Info(oepvcl):      5 of      8 k-points
475s Info(oepvcl):      6 of      8 k-points
476s Info(oepvcl):      7 of      8 k-points
477s Info(oepvcl):      8 of      8 k-points
480s Info(oepmain): done   10 iterations of   20
481s Info(oepmain): done   20 iterations of   20
482s 
482s Warning(gndstate): failed to reach self-consistency after    2 loops
482s Info(oepvcl):      1 of      8 k-points
483s Info(oepvcl):      2 of      8 k-points
484s Info(oepvcl):      3 of      8 k-points
485s Info(oepvcl):      4 of      8 k-points
485s Info(oepvcl):      5 of      8 k-points
486s Info(oepvcl):      6 of      8 k-points
487s Info(oepvcl):      7 of      8 k-points
488s Info(oepvcl):      8 of      8 k-points
491s Info(oepmain): done   10 iterations of   20
492s Info(oepmain): done   20 iterations of   20
493s Info(exxengy):      1 of      8 k-points
493s Info(exxengy):      2 of      8 k-points
493s Info(exxengy):      3 of      8 k-points
493s Info(exxengy):      4 of      8 k-points
493s Info(exxengy):      5 of      8 k-points
493s Info(exxengy):      6 of      8 k-points
493s Info(exxengy):      7 of      8 k-points
494s Info(exxengy):      8 of      8 k-points
494s 
494s +-----------------------+
494s | Current task :    500 |
494s +-----------------------+
494s 
494s Info(testcheck): passed all tests
494s 
494s +------------------+
494s | Elk code stopped |
494s +------------------+
494s  Passed
494s 
494s Running test in directory test_018...
494s 
494s +---------------------------------+
494s | Elk code version 9.2.12 started |
494s +---------------------------------+
494s 
494s Number of MPI processes :      1
494s Number of OpenMP threads per MPI process :    1
494s Total number of threads (MPI x OpenMP) :      1
494s Maximum OpenMP nesting level :    4
494s Number of OpenMP threads at first nesting level :    1
494s Number of MKL threads :    1
494s 
494s RAM disk enabled
494s 
494s +-----------------------+
494s | Current task :      0 |
494s +-----------------------+
496s 
496s +-----------------------+
496s | Current task :    205 |
496s +-----------------------+
497s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P1.OUT
510s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P1.OUT
532s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P1.OUT
546s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P2.OUT
558s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P2.OUT
576s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P2.OUT
592s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P3.OUT
605s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P3.OUT
621s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P3.OUT
636s Info(dyntask): nothing more to do
636s 
636s +-----------------------+
636s | Current task :    210 |
636s +-----------------------+
640s 
640s Info(phdos):
640s  phonon density of states written to PHDOS.OUT
640s  thermodynamic properties written to THERMO.OUT
640s 
640s +-----------------------+
640s | Current task :    500 |
640s +-----------------------+
640s 
640s Info(testcheck): passed all tests
640s 
640s +------------------+
640s | Elk code stopped |
640s +------------------+
640s  Passed
640s autopkgtest [12:22:19]: test testsuite.sh: -----------------------]
641s autopkgtest [12:22:20]: test testsuite.sh:  - - - - - - - - - - results - - - - - - - - - -
641s testsuite.sh         PASS
641s autopkgtest [12:22:20]: @@@@@@@@@@@@@@@@@@@@ summary
641s testsuite.sh         PASS
688s Creating nova instance adt-noble-arm64-elkcode-20240318-121139-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240317.img (UUID 7a23b7f2-4731-4803-bcc6-08355044298e)...