0s autopkgtest [01:01:16]: starting date and time: 2024-04-19 01:01:16+0000
  0s autopkgtest [01:01:16]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline
  0s autopkgtest [01:01:16]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dgh1tq5f/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gsl --apt-upgrade eigensoft --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-22.secgroup --name adt-noble-arm64-eigensoft-20240419-010116-juju-7f2275-prod-proposed-migration-environment-3-c093e09e-9386-4518-b0bf-3e639777ac9d --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
175s autopkgtest [01:04:11]: testbed dpkg architecture: arm64
175s autopkgtest [01:04:11]: testbed apt version: 2.7.14build2
175s autopkgtest [01:04:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup
177s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
178s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB]
178s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [54.2 kB]
178s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [376 kB]
178s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B]
178s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [130 kB]
178s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
179s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [92.9 kB]
179s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
179s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [563 kB]
179s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
179s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
187s Fetched 1360 kB in 3s (504 kB/s)
187s Reading package lists...
190s sh: 4: dhclient: not found
193s Reading package lists...
194s Building dependency tree...
194s Reading state information...
196s Calculating upgrade...
198s The following packages will be upgraded:
198s   apport apport-core-dump-handler libkeyutils1 libnuma1 libunwind8 make man-db
198s   netcat-openbsd numactl python3-apport python3-problem-report
198s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
198s Need to get 1797 kB of archives.
198s After this operation, 1024 B of additional disk space will be used.
198s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 python3-problem-report all 2.28.1-0ubuntu1 [23.8 kB]
198s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 python3-apport all 2.28.1-0ubuntu1 [92.1 kB]
198s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 apport-core-dump-handler all 2.28.1-0ubuntu1 [16.8 kB]
198s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 apport all 2.28.1-0ubuntu1 [83.5 kB]
198s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libkeyutils1 arm64 1.6.3-3build1 [9654 B]
198s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 netcat-openbsd arm64 1.226-1ubuntu2 [43.8 kB]
198s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libnuma1 arm64 2.0.18-1build1 [23.6 kB]
198s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 man-db arm64 2.12.0-4build2 [1232 kB]
199s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libunwind8 arm64 1.6.2-3build1 [53.5 kB]
199s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 make arm64 4.3-4.1build2 [178 kB]
199s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 numactl arm64 2.0.18-1build1 [39.5 kB]
200s Preconfiguring packages ...
200s Fetched 1797 kB in 1s (2160 kB/s)
201s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 77740 files and directories currently installed.)
201s Preparing to unpack .../00-python3-problem-report_2.28.1-0ubuntu1_all.deb ...
202s Unpacking python3-problem-report (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ...
202s Preparing to unpack .../01-python3-apport_2.28.1-0ubuntu1_all.deb ...
202s Unpacking python3-apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ...
202s Preparing to unpack .../02-apport-core-dump-handler_2.28.1-0ubuntu1_all.deb ...
202s Unpacking apport-core-dump-handler (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ...
203s Preparing to unpack .../03-apport_2.28.1-0ubuntu1_all.deb ...
203s Unpacking apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ...
203s Preparing to unpack .../04-libkeyutils1_1.6.3-3build1_arm64.deb ...
203s Unpacking libkeyutils1:arm64 (1.6.3-3build1) over (1.6.3-3) ...
203s Preparing to unpack .../05-netcat-openbsd_1.226-1ubuntu2_arm64.deb ...
203s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ...
203s Preparing to unpack .../06-libnuma1_2.0.18-1build1_arm64.deb ...
203s Unpacking libnuma1:arm64 (2.0.18-1build1) over (2.0.18-1) ...
204s Preparing to unpack .../07-man-db_2.12.0-4build2_arm64.deb ...
204s Unpacking man-db (2.12.0-4build2) over (2.12.0-4build1) ...
204s Preparing to unpack .../08-libunwind8_1.6.2-3build1_arm64.deb ...
204s Unpacking libunwind8:arm64 (1.6.2-3build1) over (1.6.2-3) ...
204s Preparing to unpack .../09-make_4.3-4.1build2_arm64.deb ...
204s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ...
205s Preparing to unpack .../10-numactl_2.0.18-1build1_arm64.deb ...
205s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ...
205s Setting up libkeyutils1:arm64 (1.6.3-3build1) ...
205s Setting up python3-problem-report (2.28.1-0ubuntu1) ...
206s Setting up netcat-openbsd (1.226-1ubuntu2) ...
206s Setting up man-db (2.12.0-4build2) ...
206s Updating database of manual pages ...
214s man-db.service is a disabled or a static unit not running, not starting it.
215s Setting up libunwind8:arm64 (1.6.2-3build1) ...
215s Setting up python3-apport (2.28.1-0ubuntu1) ...
218s Setting up make (4.3-4.1build2) ...
218s Setting up libnuma1:arm64 (2.0.18-1build1) ...
218s Setting up numactl (2.0.18-1build1) ...
218s Setting up apport-core-dump-handler (2.28.1-0ubuntu1) ...
225s Setting up apport (2.28.1-0ubuntu1) ...
225s Installing new version of config file /etc/apport/crashdb.conf ...
229s apport-autoreport.service is a disabled or a static unit not running, not starting it.
230s Processing triggers for libc-bin (2.39-0ubuntu8) ...
230s Reading package lists...
231s Building dependency tree...
231s Reading state information...
233s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
234s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
234s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
234s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
234s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
241s Reading package lists...
241s Reading package lists...
242s Building dependency tree...
242s Reading state information...
244s Calculating upgrade...
245s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
245s Reading package lists...
246s Building dependency tree...
246s Reading state information...
248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
249s autopkgtest [01:05:25]: rebooting testbed after setup commands that affected boot
413s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
434s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
444s autopkgtest [01:08:40]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP PREEMPT_DYNAMIC Fri Apr  5 02:52:09 UTC 2024
448s autopkgtest [01:08:44]: @@@@@@@@@@@@@@@@@@@@ apt-source eigensoft
452s Get:1 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (dsc) [2132 B]
452s Get:2 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (tar) [231 kB]
452s Get:3 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (diff) [6240 B]
453s gpgv: Signature made Wed Jan 31 18:19:21 2024 UTC
453s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
453s gpgv:                issuer "tille@debian.org"
453s gpgv: Can't check signature: No public key
453s dpkg-source: warning: cannot verify inline signature for ./eigensoft_8.0.0+dfsg-2.dsc: no acceptable signature found
454s autopkgtest [01:08:50]: testing package eigensoft version 8.0.0+dfsg-2
454s autopkgtest [01:08:50]: build not needed
454s autopkgtest [01:08:50]: test test-working: preparing testbed
457s Reading package lists...
458s Building dependency tree...
458s Reading state information...
459s Starting pkgProblemResolver with broken count: 0
460s Starting 2 pkgProblemResolver with broken count: 0
460s Done
462s The following additional packages will be installed:
462s   eigensoft libblas3 libgfortran5 libgsl27 libgslcblas0 liblapack3 liblapacke
462s   libtmglib3
462s Suggested packages:
462s   gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
462s Recommended packages:
462s   gnuplot
462s The following NEW packages will be installed:
462s   autopkgtest-satdep eigensoft libblas3 libgfortran5 libgsl27 libgslcblas0
462s   liblapack3 liblapacke libtmglib3
462s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded.
462s Need to get 4676 kB/4677 kB of archives.
462s After this operation, 15.6 MB of additional disk space will be used.
462s Get:1 /tmp/autopkgtest.wGUwxD/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B]
462s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3build1 [143 kB]
463s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgslcblas0 arm64 2.7.1+dfsg-6ubuntu2 [72.8 kB]
463s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgsl27 arm64 2.7.1+dfsg-6ubuntu2 [918 kB]
463s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240412-0ubuntu1 [444 kB]
463s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3build1 [2241 kB]
463s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libtmglib3 arm64 3.12.0-3build1 [112 kB]
463s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 liblapacke arm64 3.12.0-3build1 [427 kB]
464s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 eigensoft arm64 8.0.0+dfsg-2 [318 kB]
465s Fetched 4676 kB in 2s (2966 kB/s)
466s Selecting previously unselected package libblas3:arm64.
466s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 77739 files and directories currently installed.)
466s Preparing to unpack .../0-libblas3_3.12.0-3build1_arm64.deb ...
466s Unpacking libblas3:arm64 (3.12.0-3build1) ...
466s Selecting previously unselected package libgslcblas0:arm64.
466s Preparing to unpack .../1-libgslcblas0_2.7.1+dfsg-6ubuntu2_arm64.deb ...
466s Unpacking libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu2) ...
466s Selecting previously unselected package libgsl27:arm64.
466s Preparing to unpack .../2-libgsl27_2.7.1+dfsg-6ubuntu2_arm64.deb ...
466s Unpacking libgsl27:arm64 (2.7.1+dfsg-6ubuntu2) ...
467s Selecting previously unselected package libgfortran5:arm64.
467s Preparing to unpack .../3-libgfortran5_14-20240412-0ubuntu1_arm64.deb ...
467s Unpacking libgfortran5:arm64 (14-20240412-0ubuntu1) ...
467s Selecting previously unselected package liblapack3:arm64.
467s Preparing to unpack .../4-liblapack3_3.12.0-3build1_arm64.deb ...
467s Unpacking liblapack3:arm64 (3.12.0-3build1) ...
467s Selecting previously unselected package libtmglib3:arm64.
467s Preparing to unpack .../5-libtmglib3_3.12.0-3build1_arm64.deb ...
467s Unpacking libtmglib3:arm64 (3.12.0-3build1) ...
467s Selecting previously unselected package liblapacke:arm64.
467s Preparing to unpack .../6-liblapacke_3.12.0-3build1_arm64.deb ...
467s Unpacking liblapacke:arm64 (3.12.0-3build1) ...
468s Selecting previously unselected package eigensoft.
468s Preparing to unpack .../7-eigensoft_8.0.0+dfsg-2_arm64.deb ...
468s Unpacking eigensoft (8.0.0+dfsg-2) ...
468s Selecting previously unselected package autopkgtest-satdep.
468s Preparing to unpack .../8-1-autopkgtest-satdep.deb ...
468s Unpacking autopkgtest-satdep (0) ...
468s Setting up libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu2) ...
468s Setting up libgsl27:arm64 (2.7.1+dfsg-6ubuntu2) ...
468s Setting up libblas3:arm64 (3.12.0-3build1) ...
468s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
468s Setting up libgfortran5:arm64 (14-20240412-0ubuntu1) ...
468s Setting up liblapack3:arm64 (3.12.0-3build1) ...
468s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
468s Setting up libtmglib3:arm64 (3.12.0-3build1) ...
468s Setting up liblapacke:arm64 (3.12.0-3build1) ...
468s Setting up eigensoft (8.0.0+dfsg-2) ...
468s Setting up autopkgtest-satdep (0) ...
468s Processing triggers for man-db (2.12.0-4build2) ...
469s Processing triggers for libc-bin (2.39-0ubuntu8) ...
480s (Reading database ... 78003 files and directories currently installed.)
480s Removing autopkgtest-satdep (0) ...
482s autopkgtest [01:09:18]: test test-working: [-----------------------
482s error: eigenstrat do not print usage information
482s error: eigenstratQTL do not print usage information
482s error: pca do not print usage information
483s autopkgtest [01:09:19]: test test-working: -----------------------]
483s test-working         PASS
483s autopkgtest [01:09:19]: test test-working:  - - - - - - - - - - results - - - - - - - - - -
484s autopkgtest [01:09:20]: @@@@@@@@@@@@@@@@@@@@ summary
484s test-working         PASS
502s Creating nova instance adt-noble-arm64-eigensoft-20240419-010116-juju-7f2275-prod-proposed-migration-environment-3-c093e09e-9386-4518-b0bf-3e639777ac9d from image adt/ubuntu-noble-arm64-server-20240418.img (UUID 6f8e97a7-9a55-4e99-9797-31213b709dd4)...