0s autopkgtest [19:44:53]: starting date and time: 2024-03-22 19:44:53+0000 0s autopkgtest [19:44:53]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [19:44:53]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s9q0ketj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade dcmstack --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-30.secgroup --name adt-noble-arm64-dcmstack-20240322-194453-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 375s autopkgtest [19:51:08]: testbed dpkg architecture: arm64 375s autopkgtest [19:51:08]: testbed apt version: 2.7.12 375s autopkgtest [19:51:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 377s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 378s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 378s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [499 kB] 379s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4008 kB] 381s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [58.8 kB] 381s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [680 kB] 382s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 382s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 382s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 382s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4359 kB] 384s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 384s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [68.4 kB] 384s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 395s Fetched 9841 kB in 8s (1169 kB/s) 396s Reading package lists... 403s Reading package lists... 404s Building dependency tree... 404s Reading state information... 406s Calculating upgrade... 407s The following packages will be upgraded: 407s fonts-ubuntu-console 408s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 408s Need to get 18.7 kB of archives. 408s After this operation, 0 B of additional disk space will be used. 408s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 409s Fetched 18.7 kB in 0s (67.2 kB/s) 410s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 410s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 410s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 410s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 411s Reading package lists... 411s Building dependency tree... 411s Reading state information... 414s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 416s sh: Attempting to set up Debian/Ubuntu apt sources automatically 416s sh: Distribution appears to be Ubuntu 419s Reading package lists... 420s Building dependency tree... 420s Reading state information... 422s eatmydata is already the newest version (131-1). 422s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 422s Reading package lists... 422s Building dependency tree... 422s Reading state information... 425s dbus is already the newest version (1.14.10-4ubuntu1). 425s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 425s Reading package lists... 425s Building dependency tree... 425s Reading state information... 427s rng-tools-debian is already the newest version (2.4). 427s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 428s Reading package lists... 428s Building dependency tree... 428s Reading state information... 430s The following packages will be REMOVED: 430s cloud-init* python3-configobj* python3-debconf* 431s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 431s After this operation, 3256 kB disk space will be freed. 432s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 432s Removing cloud-init (24.1.2-0ubuntu1) ... 434s Removing python3-configobj (5.0.8-3) ... 435s Removing python3-debconf (1.5.86) ... 435s Processing triggers for man-db (2.12.0-3) ... 437s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75522 files and directories currently installed.) 437s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 440s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 440s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 440s invoke-rc.d: policy-rc.d denied execution of try-restart. 441s Reading package lists... 442s Building dependency tree... 442s Reading state information... 444s linux-generic is already the newest version (6.8.0-11.11+1). 444s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 445s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 445s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 445s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 456s Reading package lists... 456s Reading package lists... 457s Building dependency tree... 457s Reading state information... 459s Calculating upgrade... 460s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 460s Reading package lists... 461s Building dependency tree... 461s Reading state information... 463s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 464s autopkgtest [19:52:37]: rebooting testbed after setup commands that affected boot 662s autopkgtest [19:55:55]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 667s autopkgtest [19:56:00]: @@@@@@@@@@@@@@@@@@@@ apt-source dcmstack 674s Get:1 http://ftpmaster.internal/ubuntu noble/universe dcmstack 0.9-1 (dsc) [2203 B] 674s Get:2 http://ftpmaster.internal/ubuntu noble/universe dcmstack 0.9-1 (tar) [1740 kB] 674s Get:3 http://ftpmaster.internal/ubuntu noble/universe dcmstack 0.9-1 (diff) [6204 B] 675s gpgv: Signature made Fri Sep 30 00:09:48 2022 UTC 675s gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA 675s gpgv: Can't check signature: No public key 675s dpkg-source: warning: cannot verify inline signature for ./dcmstack_0.9-1.dsc: no acceptable signature found 675s autopkgtest [19:56:08]: testing package dcmstack version 0.9-1 676s autopkgtest [19:56:09]: build not needed 678s autopkgtest [19:56:11]: test run-unit-test: preparing testbed 682s Reading package lists... 683s Building dependency tree... 683s Reading state information... 685s Starting pkgProblemResolver with broken count: 0 685s Starting 2 pkgProblemResolver with broken count: 0 685s Done 688s The following additional packages will be installed: 688s libblas3 libgfortran5 libjs-jquery libjs-sphinxdoc libjs-underscore 688s liblapack3 liblbfgsb0 python3-all python3-dcmstack python3-decorator 688s python3-iniconfig python3-nibabel python3-numpy python3-packaging 688s python3-pluggy python3-pydicom python3-pytest python3-scipy 688s Suggested packages: 688s python-nibabel-doc gcc gfortran python3-dev python3-matplotlib python3-gdcm 688s python-scipy-doc 688s Recommended packages: 688s javascript-common python3-fuse python3-pil g++ | c++-compiler 689s The following NEW packages will be installed: 689s autopkgtest-satdep libblas3 libgfortran5 libjs-jquery libjs-sphinxdoc 689s libjs-underscore liblapack3 liblbfgsb0 python3-all python3-dcmstack 689s python3-decorator python3-iniconfig python3-nibabel python3-numpy 689s python3-packaging python3-pluggy python3-pydicom python3-pytest 689s python3-scipy 689s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 689s Need to get 30.9 MB/30.9 MB of archives. 689s After this operation, 151 MB of additional disk space will be used. 689s Get:1 /tmp/autopkgtest.AmHDRN/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 690s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 690s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 690s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 690s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 690s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 690s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 691s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [27.7 kB] 691s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 691s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pydicom all 2.4.3-1 [1194 kB] 691s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 691s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 691s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 691s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-scipy arm64 1.11.4-6 [18.6 MB] 693s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-nibabel all 5.2.1-1 [2701 kB] 693s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-dcmstack all 0.9-1 [77.3 kB] 693s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 693s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 693s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 695s Fetched 30.9 MB in 4s (7708 kB/s) 695s Selecting previously unselected package libblas3:arm64. 696s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75467 files and directories currently installed.) 696s Preparing to unpack .../00-libblas3_3.12.0-3_arm64.deb ... 696s Unpacking libblas3:arm64 (3.12.0-3) ... 696s Selecting previously unselected package libgfortran5:arm64. 696s Preparing to unpack .../01-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 696s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 696s Selecting previously unselected package libjs-jquery. 696s Preparing to unpack .../02-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 696s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 697s Selecting previously unselected package libjs-underscore. 697s Preparing to unpack .../03-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 697s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 697s Selecting previously unselected package libjs-sphinxdoc. 697s Preparing to unpack .../04-libjs-sphinxdoc_7.2.6-4_all.deb ... 697s Unpacking libjs-sphinxdoc (7.2.6-4) ... 697s Selecting previously unselected package liblapack3:arm64. 697s Preparing to unpack .../05-liblapack3_3.12.0-3_arm64.deb ... 697s Unpacking liblapack3:arm64 (3.12.0-3) ... 697s Selecting previously unselected package liblbfgsb0:arm64. 697s Preparing to unpack .../06-liblbfgsb0_3.0+dfsg.4-1_arm64.deb ... 697s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 697s Selecting previously unselected package python3-all. 697s Preparing to unpack .../07-python3-all_3.12.1-0ubuntu2_arm64.deb ... 697s Unpacking python3-all (3.12.1-0ubuntu2) ... 698s Selecting previously unselected package python3-pydicom. 698s Preparing to unpack .../08-python3-pydicom_2.4.3-1_all.deb ... 698s Unpacking python3-pydicom (2.4.3-1) ... 698s Selecting previously unselected package python3-numpy. 698s Preparing to unpack .../09-python3-numpy_1%3a1.24.2-2_arm64.deb ... 698s Unpacking python3-numpy (1:1.24.2-2) ... 700s Selecting previously unselected package python3-packaging. 700s Preparing to unpack .../10-python3-packaging_23.2-1_all.deb ... 701s Unpacking python3-packaging (23.2-1) ... 701s Selecting previously unselected package python3-decorator. 701s Preparing to unpack .../11-python3-decorator_5.1.1-5_all.deb ... 701s Unpacking python3-decorator (5.1.1-5) ... 701s Selecting previously unselected package python3-scipy. 701s Preparing to unpack .../12-python3-scipy_1.11.4-6_arm64.deb ... 701s Unpacking python3-scipy (1.11.4-6) ... 707s Selecting previously unselected package python3-nibabel. 707s Preparing to unpack .../13-python3-nibabel_5.2.1-1_all.deb ... 707s Unpacking python3-nibabel (5.2.1-1) ... 709s Selecting previously unselected package python3-dcmstack. 709s Preparing to unpack .../14-python3-dcmstack_0.9-1_all.deb ... 709s Unpacking python3-dcmstack (0.9-1) ... 710s Selecting previously unselected package python3-iniconfig. 710s Preparing to unpack .../15-python3-iniconfig_1.1.1-2_all.deb ... 710s Unpacking python3-iniconfig (1.1.1-2) ... 710s Selecting previously unselected package python3-pluggy. 710s Preparing to unpack .../16-python3-pluggy_1.4.0-1_all.deb ... 710s Unpacking python3-pluggy (1.4.0-1) ... 710s Selecting previously unselected package python3-pytest. 710s Preparing to unpack .../17-python3-pytest_7.4.4-1_all.deb ... 710s Unpacking python3-pytest (7.4.4-1) ... 710s Selecting previously unselected package autopkgtest-satdep. 710s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 710s Unpacking autopkgtest-satdep (0) ... 711s Setting up python3-iniconfig (1.1.1-2) ... 712s Setting up python3-all (3.12.1-0ubuntu2) ... 712s Setting up python3-decorator (5.1.1-5) ... 713s Setting up libblas3:arm64 (3.12.0-3) ... 713s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 713s Setting up python3-packaging (23.2-1) ... 714s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 714s Setting up python3-pluggy (1.4.0-1) ... 715s Setting up python3-pydicom (2.4.3-1) ... 723s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 723s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 723s Setting up liblapack3:arm64 (3.12.0-3) ... 723s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 723s Setting up python3-pytest (7.4.4-1) ... 725s Setting up python3-numpy (1:1.24.2-2) ... 735s Setting up libjs-sphinxdoc (7.2.6-4) ... 735s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... 735s Setting up python3-scipy (1.11.4-6) ... 758s Setting up python3-nibabel (5.2.1-1) ... 762s Setting up python3-dcmstack (0.9-1) ... 763s Setting up autopkgtest-satdep (0) ... 763s Processing triggers for man-db (2.12.0-3) ... 765s Processing triggers for libc-bin (2.39-0ubuntu2) ... 778s (Reading database ... 78946 files and directories currently installed.) 778s Removing autopkgtest-satdep (0) ... 779s autopkgtest [19:57:52]: test run-unit-test: [----------------------- 780s Testing with python3.12 in /tmp/autopkgtest.AmHDRN/autopkgtest_tmp: 781s ============================= test session starts ============================== 781s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 781s cachedir: .pytest_cache 781s rootdir: /tmp/autopkgtest.AmHDRN/autopkgtest_tmp 784s collecting ... collected 131 items 784s 784s test/test_cli.py::TestDcmstackCli::test_basic PASSED [ 0%] 785s test/test_cli.py::TestDcmstackCli::test_embed PASSED [ 1%] 785s test/test_cli.py::TestNitoolCli::test_basic PASSED [ 2%] 785s test/test_dcmmeta.py::test_is_constant PASSED [ 3%] 785s test/test_dcmmeta.py::test_is_repeating PASSED [ 3%] 785s test/test_dcmmeta.py::test_get_valid_classes PASSED [ 4%] 785s test/test_dcmmeta.py::test_get_mulitplicity_4d PASSED [ 5%] 785s test/test_dcmmeta.py::test_get_mulitplicity_4d_vec PASSED [ 6%] 785s test/test_dcmmeta.py::test_get_mulitplicity_5d PASSED [ 6%] 785s test/test_dcmmeta.py::TestCheckValid::test_empty PASSED [ 7%] 785s test/test_dcmmeta.py::TestCheckValid::test_const PASSED [ 8%] 785s test/test_dcmmeta.py::TestCheckValid::test_global_slices PASSED [ 9%] 785s test/test_dcmmeta.py::TestCheckValid::test_time_samples PASSED [ 9%] 785s test/test_dcmmeta.py::TestCheckValid::test_time_slices PASSED [ 10%] 785s test/test_dcmmeta.py::TestCheckValid::test_vector_samples PASSED [ 11%] 785s test/test_dcmmeta.py::TestCheckValid::test_vector_slices PASSED [ 12%] 785s test/test_dcmmeta.py::TestCheckValid::test_invalid_affine PASSED [ 12%] 785s test/test_dcmmeta.py::TestCheckValid::test_invalid_slice_dim PASSED [ 13%] 785s test/test_dcmmeta.py::TestCheckValid::test_invalid_shape PASSED [ 14%] 785s test/test_dcmmeta.py::TestCheckValid::test_multiple_classes PASSED [ 15%] 785s test/test_dcmmeta.py::test_dcmmeta_affine PASSED [ 16%] 785s test/test_dcmmeta.py::test_dcmmeta_slice_dim PASSED [ 16%] 785s test/test_dcmmeta.py::test_dcmmeta_shape PASSED [ 17%] 785s test/test_dcmmeta.py::test_dcmmeta_version PASSED [ 18%] 785s test/test_dcmmeta.py::test_dcmmeta_slice_norm PASSED [ 19%] 785s test/test_dcmmeta.py::test_dcmmeta_n_slices PASSED [ 19%] 785s test/test_dcmmeta.py::TestGetKeysClassesValues::test_get_keys PASSED [ 20%] 785s test/test_dcmmeta.py::TestGetKeysClassesValues::test_get_classification PASSED [ 21%] 785s test/test_dcmmeta.py::TestGetKeysClassesValues::test_get_class_dict PASSED [ 22%] 785s test/test_dcmmeta.py::TestGetKeysClassesValues::test_get_values PASSED [ 22%] 785s test/test_dcmmeta.py::TestGetKeysClassesValues::test_get_vals_and_class PASSED [ 23%] 785s test/test_dcmmeta.py::TestFiltering::test_filter_all PASSED [ 24%] 785s test/test_dcmmeta.py::TestFiltering::test_filter_some PASSED [ 25%] 785s test/test_dcmmeta.py::TestFiltering::test_clear_slices PASSED [ 25%] 785s test/test_dcmmeta.py::TestSimplify::test_simplify_global_slices PASSED [ 26%] 785s test/test_dcmmeta.py::TestSimplify::test_simplify_vector_slices PASSED [ 27%] 785s test/test_dcmmeta.py::TestSimplify::test_simplify_time_slices PASSED [ 28%] 785s test/test_dcmmeta.py::TestSimplify::test_simplify_time_samples PASSED [ 29%] 785s test/test_dcmmeta.py::TestSimplify::test_simplify_vector_samples PASSED [ 29%] 785s test/test_dcmmeta.py::test_simp_sngl_slc_5d PASSED [ 30%] 785s test/test_dcmmeta.py::TestGetSubset::test_slice_subset PASSED [ 31%] 785s test/test_dcmmeta.py::TestGetSubset::test_slice_subset_simplify PASSED [ 32%] 785s test/test_dcmmeta.py::TestGetSubset::test_time_sample_subset PASSED [ 32%] 785s test/test_dcmmeta.py::TestGetSubset::test_time_sample_subset_simplify PASSED [ 33%] 785s test/test_dcmmeta.py::TestGetSubset::test_vector_sample_subset PASSED [ 34%] 785s test/test_dcmmeta.py::TestGetSubset::test_vector_sample_subset_simplify PASSED [ 35%] 785s test/test_dcmmeta.py::TestChangeClass::test_change_none PASSED [ 35%] 785s test/test_dcmmeta.py::TestChangeClass::test_change_global_const PASSED [ 36%] 785s test/test_dcmmeta.py::TestChangeClass::test_change_vector_samples PASSED [ 37%] 785s test/test_dcmmeta.py::TestChangeClass::test_change_time_samples PASSED [ 38%] 785s test/test_dcmmeta.py::TestChangeClass::test_time_slices PASSED [ 38%] 785s test/test_dcmmeta.py::TestChangeClass::test_vector_slices PASSED [ 39%] 785s test/test_dcmmeta.py::test_from_sequence_2d_to_3d PASSED [ 40%] 785s test/test_dcmmeta.py::test_from_sequence_3d_to_4d PASSED [ 41%] 785s test/test_dcmmeta.py::test_from_sequence_4d_time_to_5d PASSED [ 41%] 785s test/test_dcmmeta.py::test_from_sequence_no_slc PASSED [ 42%] 786s test/test_dcmmeta.py::test_nifti_wrapper_init PASSED [ 43%] 786s test/test_dcmmeta.py::TestMetaValid::test_time_samples_changed PASSED [ 44%] 786s test/test_dcmmeta.py::TestMetaValid::test_vector_samples_changed PASSED [ 45%] 786s test/test_dcmmeta.py::TestMetaValid::test_slice_dim_changed PASSED [ 45%] 786s test/test_dcmmeta.py::TestMetaValid::test_slice_dir_changed PASSED [ 46%] 786s test/test_dcmmeta.py::TestGetMeta::test_get_item PASSED [ 47%] 786s test/test_dcmmeta.py::TestGetMeta::test_get_const PASSED [ 48%] 786s test/test_dcmmeta.py::TestGetMeta::test_get_global_slices PASSED [ 48%] 786s test/test_dcmmeta.py::TestGetMeta::test_get_vector_slices PASSED [ 49%] 786s test/test_dcmmeta.py::TestGetMeta::test_get_time_slices PASSED [ 50%] 786s test/test_dcmmeta.py::TestGetMeta::test_get_vector_samples PASSED [ 51%] 786s test/test_dcmmeta.py::TestSplit::test_split_slice PASSED [ 51%] 786s test/test_dcmmeta.py::TestSplit::test_split_time PASSED [ 52%] 786s test/test_dcmmeta.py::TestSplit::test_split_vector PASSED [ 53%] 786s test/test_dcmmeta.py::test_split_keep_spatial PASSED [ 54%] 786s test/test_dcmmeta.py::test_from_dicom PASSED [ 54%] 786s test/test_dcmmeta.py::test_from_2d_slice_to_3d PASSED [ 55%] 786s test/test_dcmmeta.py::test_from_3d_time_to_4d PASSED [ 56%] 786s test/test_dcmmeta.py::test_from_3d_vector_to_4d PASSED [ 57%] 786s test/test_dcmmeta.py::test_merge_inconsistent_hdr PASSED [ 58%] 786s test/test_dcmmeta.py::test_merge_with_slc_and_without PASSED [ 58%] 786s test/test_dcmstack.py::test_key_regex_filter PASSED [ 59%] 786s test/test_dcmstack.py::TestReorderVoxels::test_invalid_vox_order PASSED [ 60%] 786s test/test_dcmstack.py::TestReorderVoxels::test_invalid_vox_array PASSED [ 61%] 786s test/test_dcmstack.py::TestReorderVoxels::test_invalid_affine PASSED [ 61%] 786s test/test_dcmstack.py::TestReorderVoxels::test_no_op PASSED [ 62%] 787s test/test_dcmstack.py::TestReorderVoxels::test_reorder PASSED [ 63%] 787s test/test_dcmstack.py::TestReorderVoxels::test_aniso_reorder PASSED [ 64%] 787s test/test_dcmstack.py::test_dcm_time_to_sec PASSED [ 64%] 787s test/test_dcmstack.py::TestDicomOrdering::test_missing_key PASSED [ 65%] 787s test/test_dcmstack.py::TestDicomOrdering::test_non_abs PASSED [ 66%] 787s test/test_dcmstack.py::TestDicomOrdering::test_abs PASSED [ 67%] 787s test/test_dcmstack.py::TestDicomOrdering::test_abs_as_str PASSED [ 67%] 787s test/test_dcmstack.py::TestDicomOrdering::test_abs_missing PASSED [ 68%] 787s test/test_dcmstack.py::test_image_collision PASSED [ 69%] 787s test/test_dcmstack.py::TestIncongruentImage::test_rows PASSED [ 70%] 787s test/test_dcmstack.py::TestIncongruentImage::test_columns PASSED [ 70%] 787s test/test_dcmstack.py::TestIncongruentImage::test_pix_space PASSED [ 71%] 787s test/test_dcmstack.py::TestIncongruentImage::test_close_pix_space PASSED [ 72%] 787s test/test_dcmstack.py::TestIncongruentImage::test_orientation PASSED [ 73%] 788s test/test_dcmstack.py::TestIncongruentImage::test_close_orientation PASSED [ 74%] 788s test/test_dcmstack.py::TestInvalidStack::test_empty PASSED [ 74%] 788s test/test_dcmstack.py::TestInvalidStack::test_missing_slice PASSED [ 75%] 788s test/test_dcmstack.py::TestInvalidStack::test_wrong_number_of_files PASSED [ 76%] 788s test/test_dcmstack.py::TestInvalidStack::test_vector_var_over_vol PASSED [ 77%] 789s test/test_dcmstack.py::TestGetShape::test_single_slice PASSED [ 77%] 789s test/test_dcmstack.py::TestGetShape::test_three_dim PASSED [ 78%] 789s test/test_dcmstack.py::TestGetShape::test_four_dim PASSED [ 79%] 789s test/test_dcmstack.py::TestGetShape::test_five_dim PASSED [ 80%] 790s test/test_dcmstack.py::TestGuessDim::test_single_guess PASSED [ 80%] 791s test/test_dcmstack.py::TestGuessDim::test_wrong_guess_first PASSED [ 81%] 791s test/test_dcmstack.py::TestGetData::test_single_slice PASSED [ 82%] 791s test/test_dcmstack.py::TestGetData::test_three_dim PASSED [ 83%] 792s test/test_dcmstack.py::TestGetData::test_four_dim PASSED [ 83%] 792s test/test_dcmstack.py::TestGetData::test_five_dim PASSED [ 84%] 792s test/test_dcmstack.py::TestGetAffine::test_single_slice PASSED [ 85%] 792s test/test_dcmstack.py::TestGetAffine::test_three_dim PASSED [ 86%] 792s test/test_dcmstack.py::TestToNifti::test_single_slice PASSED [ 87%] 792s test/test_dcmstack.py::TestToNifti::test_single_vol PASSED [ 87%] 793s test/test_dcmstack.py::TestToNifti::test_slice_dim_reorient PASSED [ 88%] 793s test/test_dcmstack.py::TestToNifti::test_two_time_vol PASSED [ 89%] 794s test/test_dcmstack.py::TestToNifti::test_two_vector_vol PASSED [ 90%] 794s test/test_dcmstack.py::TestParseAndGroup::test_default PASSED [ 90%] 794s test/test_dcmstack.py::TestParseAndStack::test_default PASSED [ 91%] 794s test/test_dcmstack.py::test_fsl_hack PASSED [ 92%] 794s test/test_dcmstack.py::test_pix_overflow PASSED [ 93%] 794s test/test_extract.py::TestCsa::test_simplify PASSED [ 93%] 794s test/test_extract.py::TestCsa::test_csa_image_trans PASSED [ 94%] 794s test/test_extract.py::TestCsa::test_parse_phx_line PASSED [ 95%] 794s test/test_extract.py::TestCsa::test_csa_series_trans PASSED [ 96%] 794s test/test_extract.py::TestMetaExtractor::test_get_elem_key PASSED [ 96%] 795s test/test_extract.py::TestMetaExtractor::test_get_elem_value PASSED [ 97%] 795s test/test_extract.py::TestMetaExtractor::test_dup_trans PASSED [ 98%] 795s test/test_extract.py::TestMetaExtractor::test_reloc_private PASSED [ 99%] 795s test/test_extract.py::TestMetaExtractor::test_non_reloc_private PASSED [100%] 795s 795s =============================== warnings summary =============================== 795s test/test_cli.py::TestDcmstackCli::test_basic 795s /usr/lib/python3/dist-packages/_pytest/fixtures.py:895: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. 795s test/test_cli.py::TestDcmstackCli::test_basic is using nose-specific method: `setup(self)` 795s To remove this warning, rename it to `setup_method(self)` 795s See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose 795s fixture_result = next(generator) 795s 795s test/test_cli.py::TestDcmstackCli::test_basic 795s test/test_cli.py::TestDcmstackCli::test_embed 795s test/test_cli.py::TestNitoolCli::test_basic 795s test/test_dcmstack.py::TestToNifti::test_single_vol 795s test/test_dcmstack.py::TestToNifti::test_slice_dim_reorient 795s test/test_dcmstack.py::TestToNifti::test_two_time_vol 795s test/test_dcmstack.py::TestToNifti::test_two_vector_vol 795s /usr/lib/python3/dist-packages/nibabel/nifti1.py:1646: UserWarning: Multiple slice orders satisfy: sequential decreasing, alternating decreasing, alternating increasing 2. Choosing the first one 795s warnings.warn( 795s 795s test/test_cli.py::TestDcmstackCli::test_basic 795s /usr/lib/python3/dist-packages/_pytest/fixtures.py:911: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. 795s test/test_cli.py::TestDcmstackCli::test_basic is using nose-specific method: `teardown(self)` 795s To remove this warning, rename it to `teardown_method(self)` 795s See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose 795s next(it) 795s 795s test/test_cli.py::TestDcmstackCli::test_embed 795s /usr/lib/python3/dist-packages/_pytest/fixtures.py:895: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. 795s test/test_cli.py::TestDcmstackCli::test_embed is using nose-specific method: `setup(self)` 795s To remove this warning, rename it to `setup_method(self)` 795s See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose 795s fixture_result = next(generator) 795s 795s test/test_cli.py::TestDcmstackCli::test_embed 795s /usr/lib/python3/dist-packages/_pytest/fixtures.py:911: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. 795s test/test_cli.py::TestDcmstackCli::test_embed is using nose-specific method: `teardown(self)` 795s To remove this warning, rename it to `teardown_method(self)` 795s See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose 795s next(it) 795s 795s test/test_cli.py::TestNitoolCli::test_basic 795s /usr/lib/python3/dist-packages/_pytest/fixtures.py:895: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. 795s test/test_cli.py::TestNitoolCli::test_basic is using nose-specific method: `setup(self)` 795s To remove this warning, rename it to `setup_method(self)` 795s See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose 795s fixture_result = next(generator) 795s 795s test/test_cli.py::TestNitoolCli::test_basic 795s /usr/lib/python3/dist-packages/_pytest/fixtures.py:911: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release. 795s test/test_cli.py::TestNitoolCli::test_basic is using nose-specific method: `teardown(self)` 795s To remove this warning, rename it to `teardown_method(self)` 795s See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose 795s next(it) 795s 795s test/test_dcmstack.py::test_fsl_hack 795s test/test_dcmstack.py::test_pix_overflow 795s /usr/lib/python3/dist-packages/pydicom/dataset.py:2249: DeprecationWarning: Starting in pydicom 3.0, Dataset.file_meta must be a FileMetaDataset class instance 795s warnings.warn( 795s 795s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 795s ====================== 131 passed, 15 warnings in 13.99s ======================= 796s PASS 796s autopkgtest [19:58:09]: test run-unit-test: -----------------------] 797s autopkgtest [19:58:10]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 797s run-unit-test PASS 798s autopkgtest [19:58:11]: @@@@@@@@@@@@@@@@@@@@ summary 798s run-unit-test PASS 817s Creating nova instance adt-noble-arm64-dcmstack-20240322-194453-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240322.img (UUID 30e11504-94c3-4021-bd9a-a4301970c682)...