0s autopkgtest [17:10:41]: starting date and time: 2024-03-16 17:10:41+0000 0s autopkgtest [17:10:41]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:10:41]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.939pcnmf/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:htslib,src:curl,src:gnutls28,src:libpsl,src:nettle,src:openssl --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=htslib/1.19+ds-1.1build2 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-7.secgroup --name adt-noble-arm64-cyvcf2-20240316-171041-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 98s autopkgtest [17:12:19]: testbed dpkg architecture: arm64 98s autopkgtest [17:12:19]: testbed apt version: 2.7.12 98s autopkgtest [17:12:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 99s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 100s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 101s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 101s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 101s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 101s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 101s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 101s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 101s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 101s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 101s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 101s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 107s Fetched 9063 kB in 3s (2982 kB/s) 107s Reading package lists... 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s Calculating upgrade... 114s The following packages will be REMOVED: 114s libssl3 114s The following NEW packages will be installed: 114s libssl3t64 114s The following packages have been kept back: 114s curl 114s The following packages will be upgraded: 114s openssl 114s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 114s Need to get 2753 kB of archives. 114s After this operation, 72.7 kB of additional disk space will be used. 114s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 114s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 115s Fetched 2753 kB in 1s (3287 kB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 116s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 116s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 116s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 116s wget depends on libssl3 (>= 3.0.0). 116s u-boot-tools depends on libssl3 (>= 3.0.0). 116s tnftp depends on libssl3 (>= 3.0.0). 116s tcpdump depends on libssl3 (>= 3.0.0). 116s systemd-resolved depends on libssl3 (>= 3.0.0). 116s systemd depends on libssl3 (>= 3.0.0). 116s sudo depends on libssl3 (>= 3.0.0). 116s sbsigntool depends on libssl3 (>= 3.0.0). 116s rsync depends on libssl3 (>= 3.0.0). 116s python3-cryptography depends on libssl3 (>= 3.0.0). 116s openssh-server depends on libssl3 (>= 3.0.10). 116s openssh-client depends on libssl3 (>= 3.0.10). 116s mtd-utils depends on libssl3 (>= 3.0.0). 116s mokutil depends on libssl3 (>= 3.0.0). 116s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 116s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 116s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 116s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 116s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 116s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 116s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 116s libnvme1 depends on libssl3 (>= 3.0.0). 116s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 116s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 116s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 116s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 116s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 116s kmod depends on libssl3 (>= 3.0.0). 116s dhcpcd-base depends on libssl3 (>= 3.0.0). 116s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 116s 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 116s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 116s Selecting previously unselected package libssl3t64:arm64. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 116s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 116s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 117s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 117s Setting up openssl (3.0.13-0ubuntu1) ... 117s Processing triggers for man-db (2.12.0-3) ... 117s Processing triggers for libc-bin (2.39-0ubuntu2) ... 118s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 120s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 120s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 121s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 121s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 124s Reading package lists... 124s Reading package lists... 125s Building dependency tree... 125s Reading state information... 126s Calculating upgrade... 127s The following packages have been kept back: 127s curl 127s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 132s autopkgtest [17:12:53]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 133s autopkgtest [17:12:54]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2 135s Get:1 http://ftpmaster.internal/ubuntu noble/universe cyvcf2 0.30.28-1 (dsc) [2426 B] 135s Get:2 http://ftpmaster.internal/ubuntu noble/universe cyvcf2 0.30.28-1 (tar) [420 kB] 135s Get:3 http://ftpmaster.internal/ubuntu noble/universe cyvcf2 0.30.28-1 (diff) [6612 B] 135s gpgv: Signature made Sun Feb 18 08:27:59 2024 UTC 135s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 135s gpgv: Can't check signature: No public key 135s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.30.28-1.dsc: no acceptable signature found 135s autopkgtest [17:12:56]: testing package cyvcf2 version 0.30.28-1 136s autopkgtest [17:12:57]: build not needed 136s autopkgtest [17:12:57]: test run-unit-test: preparing testbed 138s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s Starting pkgProblemResolver with broken count: 0 140s Starting 2 pkgProblemResolver with broken count: 0 140s Done 141s The following additional packages will be installed: 141s libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 liblapack3 141s python3-all python3-click python3-colorama python3-coloredlogs 141s python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy 141s python3-packaging python3-pluggy python3-pytest 141s Suggested packages: 141s gcc gfortran python3-dev 142s The following NEW packages will be installed: 142s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 142s liblapack3 python3-all python3-click python3-colorama python3-coloredlogs 142s python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy 142s python3-packaging python3-pluggy python3-pytest 142s 0 upgraded, 18 newly installed, 0 to remove and 1 not upgraded. 142s Need to get 9511 kB/9512 kB of archives. 142s After this operation, 44.8 MB of additional disk space will be used. 142s Get:1 /tmp/autopkgtest.qxgPpF/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 142s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 142s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 142s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 142s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 142s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhts3 arm64 1.19+ds-1 [429 kB] 142s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 143s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 143s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 143s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 python3-click all 8.1.6-1 [79.0 kB] 143s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-humanfriendly all 10.0-3 [70.4 kB] 143s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 143s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 144s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cyvcf2 arm64 0.30.28-1 [1015 kB] 144s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 144s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 144s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 144s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 145s Fetched 9511 kB in 2s (4572 kB/s) 145s Selecting previously unselected package libblas3:arm64. 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 145s Preparing to unpack .../00-libblas3_3.12.0-3_arm64.deb ... 145s Unpacking libblas3:arm64 (3.12.0-3) ... 145s Selecting previously unselected package libdeflate0:arm64. 145s Preparing to unpack .../01-libdeflate0_1.19-1_arm64.deb ... 145s Unpacking libdeflate0:arm64 (1.19-1) ... 145s Selecting previously unselected package libgfortran5:arm64. 145s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 145s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 145s Selecting previously unselected package libhtscodecs2:arm64. 145s Preparing to unpack .../03-libhtscodecs2_1.6.0-1_arm64.deb ... 145s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 145s Selecting previously unselected package libhts3:arm64. 145s Preparing to unpack .../04-libhts3_1.19+ds-1_arm64.deb ... 145s Unpacking libhts3:arm64 (1.19+ds-1) ... 145s Selecting previously unselected package liblapack3:arm64. 145s Preparing to unpack .../05-liblapack3_3.12.0-3_arm64.deb ... 145s Unpacking liblapack3:arm64 (3.12.0-3) ... 145s Selecting previously unselected package python3-all. 145s Preparing to unpack .../06-python3-all_3.12.1-0ubuntu2_arm64.deb ... 145s Unpacking python3-all (3.12.1-0ubuntu2) ... 145s Selecting previously unselected package python3-colorama. 145s Preparing to unpack .../07-python3-colorama_0.4.6-4_all.deb ... 145s Unpacking python3-colorama (0.4.6-4) ... 145s Selecting previously unselected package python3-click. 145s Preparing to unpack .../08-python3-click_8.1.6-1_all.deb ... 145s Unpacking python3-click (8.1.6-1) ... 146s Selecting previously unselected package python3-humanfriendly. 146s Preparing to unpack .../09-python3-humanfriendly_10.0-3_all.deb ... 146s Unpacking python3-humanfriendly (10.0-3) ... 146s Selecting previously unselected package python3-coloredlogs. 146s Preparing to unpack .../10-python3-coloredlogs_15.0.1-1_all.deb ... 146s Unpacking python3-coloredlogs (15.0.1-1) ... 146s Selecting previously unselected package python3-numpy. 146s Preparing to unpack .../11-python3-numpy_1%3a1.24.2-2_arm64.deb ... 146s Unpacking python3-numpy (1:1.24.2-2) ... 146s Selecting previously unselected package python3-cyvcf2. 146s Preparing to unpack .../12-python3-cyvcf2_0.30.28-1_arm64.deb ... 146s Unpacking python3-cyvcf2 (0.30.28-1) ... 147s Selecting previously unselected package python3-iniconfig. 147s Preparing to unpack .../13-python3-iniconfig_1.1.1-2_all.deb ... 147s Unpacking python3-iniconfig (1.1.1-2) ... 147s Selecting previously unselected package python3-packaging. 147s Preparing to unpack .../14-python3-packaging_23.2-1_all.deb ... 147s Unpacking python3-packaging (23.2-1) ... 147s Selecting previously unselected package python3-pluggy. 147s Preparing to unpack .../15-python3-pluggy_1.4.0-1_all.deb ... 147s Unpacking python3-pluggy (1.4.0-1) ... 147s Selecting previously unselected package python3-pytest. 147s Preparing to unpack .../16-python3-pytest_7.4.4-1_all.deb ... 147s Unpacking python3-pytest (7.4.4-1) ... 147s Selecting previously unselected package autopkgtest-satdep. 147s Preparing to unpack .../17-1-autopkgtest-satdep.deb ... 147s Unpacking autopkgtest-satdep (0) ... 147s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 147s Setting up python3-iniconfig (1.1.1-2) ... 147s Setting up python3-colorama (0.4.6-4) ... 148s Setting up libdeflate0:arm64 (1.19-1) ... 148s Setting up python3-all (3.12.1-0ubuntu2) ... 148s Setting up python3-click (8.1.6-1) ... 148s Setting up libblas3:arm64 (3.12.0-3) ... 148s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 148s Setting up python3-packaging (23.2-1) ... 149s Setting up python3-humanfriendly (10.0-3) ... 149s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 149s Setting up python3-pluggy (1.4.0-1) ... 149s Setting up python3-coloredlogs (15.0.1-1) ... 150s Setting up liblapack3:arm64 (3.12.0-3) ... 150s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 150s Setting up libhts3:arm64 (1.19+ds-1) ... 150s Setting up python3-pytest (7.4.4-1) ... 151s Setting up python3-numpy (1:1.24.2-2) ... 155s Setting up python3-cyvcf2 (0.30.28-1) ... 155s Setting up autopkgtest-satdep (0) ... 155s Processing triggers for man-db (2.12.0-3) ... 156s Processing triggers for libc-bin (2.39-0ubuntu2) ... 162s (Reading database ... 77240 files and directories currently installed.) 162s Removing autopkgtest-satdep (0) ... 163s autopkgtest [17:13:24]: test run-unit-test: [----------------------- 163s Testing with python3.12 in /tmp/autopkgtest.qxgPpF/autopkgtest_tmp: 164s ============================= test session starts ============================== 164s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 164s cachedir: .pytest_cache 164s rootdir: /tmp/autopkgtest.qxgPpF/autopkgtest_tmp 165s collecting ... collected 112 items 165s 165s cyvcf2/tests/test_cli.py::test_version PASSED [ 0%] 165s cyvcf2/tests/test_hemi.py::test_hemi PASSED [ 1%] 165s cyvcf2/tests/test_reader.py::test_init PASSED [ 2%] 165s cyvcf2/tests/test_reader.py::test_type PASSED [ 3%] 165s cyvcf2/tests/test_reader.py::test_type_mnp PASSED [ 4%] 165s cyvcf2/tests/test_reader.py::test_format_str PASSED [ 5%] 165s cyvcf2/tests/test_reader.py::test_missing_samples PASSED [ 6%] 165s cyvcf2/tests/test_reader.py::test_ibd PASSED [ 7%] 165s cyvcf2/tests/test_reader.py::test_relatedness PASSED [ 8%] 165s cyvcf2/tests/test_reader.py::test_pls PASSED [ 8%] 165s cyvcf2/tests/test_reader.py::test_gt_alt_freqs PASSED [ 9%] 165s cyvcf2/tests/test_reader.py::test_str PASSED [ 10%] 165s cyvcf2/tests/test_reader.py::test_region PASSED [ 11%] 165s cyvcf2/tests/test_reader.py::test_empty_info PASSED [ 12%] 165s cyvcf2/tests/test_reader.py::test_phases PASSED [ 13%] 165s cyvcf2/tests/test_reader.py::test_bad_init PASSED [ 14%] 165s cyvcf2/tests/test_reader.py::test_samples PASSED [ 15%] 165s cyvcf2/tests/test_reader.py::test_next PASSED [ 16%] 165s cyvcf2/tests/test_reader.py::test_variant PASSED [ 16%] 165s cyvcf2/tests/test_reader.py::test_info_dict PASSED [ 17%] 165s cyvcf2/tests/test_reader.py::test_attrs PASSED [ 18%] 165s cyvcf2/tests/test_reader.py::test_empty PASSED [ 19%] 165s cyvcf2/tests/test_reader.py::test_format_field PASSED [ 20%] 165s cyvcf2/tests/test_reader.py::test_writer_from_string PASSED [ 21%] 165s cyvcf2/tests/test_reader.py::test_isa PASSED [ 22%] 165s cyvcf2/tests/test_reader.py::test_writer PASSED [ 23%] 165s cyvcf2/tests/test_reader.py::test_filters PASSED [ 24%] 165s cyvcf2/tests/test_reader.py::test_add_info_to_header PASSED [ 25%] 165s cyvcf2/tests/test_reader.py::test_read_flag PASSED [ 25%] 165s cyvcf2/tests/test_reader.py::test_add_flag PASSED [ 26%] 165s cyvcf2/tests/test_reader.py::test_issue198 PASSED [ 27%] 165s cyvcf2/tests/test_reader.py::test_constants PASSED [ 28%] 165s cyvcf2/tests/test_reader.py::test_add_filter_to_header PASSED [ 29%] 165s cyvcf2/tests/test_reader.py::test_seqnames PASSED [ 30%] 165s cyvcf2/tests/test_reader.py::test_different_index PASSED [ 31%] 165s cyvcf2/tests/test_reader.py::test_var_type PASSED [ 32%] 165s cyvcf2/tests/test_reader.py::test_header_info PASSED [ 33%] 165s cyvcf2/tests/test_reader.py::test_snpeff_header PASSED [ 33%] 166s cyvcf2/tests/test_reader.py::test_gt_types PASSED [ 34%] 166s cyvcf2/tests/test_reader.py::test_raw_header PASSED [ 35%] 166s cyvcf2/tests/test_reader.py::test_iterate PASSED [ 36%] 166s cyvcf2/tests/test_reader.py::test_empty_call PASSED [ 37%] 166s cyvcf2/tests/test_reader.py::test_haploid PASSED [ 38%] 166s cyvcf2/tests/test_reader.py::test_diploid PASSED [ 39%] 166s cyvcf2/tests/test_reader.py::test_format PASSED [ 40%] 166s cyvcf2/tests/test_reader.py::test_header_stuff PASSED [ 41%] 166s cyvcf2/tests/test_reader.py::test_bcf PASSED [ 41%] 166s cyvcf2/tests/test_reader.py::test_vcf_no_intervals PASSED [ 42%] 166s cyvcf2/tests/test_reader.py::test_issue12 PASSED [ 43%] 166s cyvcf2/tests/test_reader.py::test_gt_bases_nondiploid PASSED [ 44%] 166s cyvcf2/tests/test_reader.py::test_set_format_float PASSED [ 45%] 166s cyvcf2/tests/test_reader.py::test_set_format_int_a PASSED [ 46%] 166s cyvcf2/tests/test_reader.py::test_set_format_int_b PASSED [ 47%] 166s cyvcf2/tests/test_reader.py::test_set_format_int_c PASSED [ 48%] 166s cyvcf2/tests/test_reader.py::test_set_format_int3 PASSED [ 49%] 166s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_second_longer PASSED [ 50%] 166s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_first_longer PASSED [ 50%] 166s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_number3 PASSED [ 51%] 166s cyvcf2/tests/test_reader.py::test_set_gts PASSED [ 52%] 166s cyvcf2/tests/test_reader.py::test_info_del PASSED [ 53%] 166s cyvcf2/tests/test_reader.py::test_filter_id PASSED [ 54%] 166s cyvcf2/tests/test_reader.py::test_access_gts PASSED [ 55%] 166s cyvcf2/tests/test_reader.py::test_access_genotype PASSED [ 56%] 166s cyvcf2/tests/test_reader.py::test_access_genotype_array PASSED [ 57%] 166s cyvcf2/tests/test_reader.py::test_alt_homozygous_gt PASSED [ 58%] 166s cyvcf2/tests/test_reader.py::test_write_missing_contig PASSED [ 58%] 166s cyvcf2/tests/test_reader.py::test_set_samples PASSED [ 59%] 166s cyvcf2/tests/test_reader.py::test_hrec PASSED [ 60%] 166s cyvcf2/tests/test_reader.py::test_issue44 PASSED [ 61%] 166s cyvcf2/tests/test_reader.py::test_id_field_updates PASSED [ 62%] 166s cyvcf2/tests/test_reader.py::test_set_pos PASSED [ 63%] 166s cyvcf2/tests/test_reader.py::test_set_chrom_when_contig_not_in_header PASSED [ 64%] 166s cyvcf2/tests/test_reader.py::test_set_chrom_after_contig_is_added_to_header PASSED [ 65%] 166s cyvcf2/tests/test_reader.py::test_set_qual PASSED [ 66%] 166s cyvcf2/tests/test_reader.py::test_strict_gt_option_flag PASSED [ 66%] 166s cyvcf2/tests/test_reader.py::test_alt_repr PASSED [ 67%] 166s cyvcf2/tests/test_reader.py::test_closed_iter PASSED [ 68%] 166s cyvcf2/tests/test_reader.py::test_issue72 PASSED [ 69%] 166s cyvcf2/tests/test_reader.py::test_is_transition PASSED [ 70%] 166s cyvcf2/tests/test_reader.py::test_decomposed PASSED [ 71%] 166s cyvcf2/tests/test_reader.py::test_fd PASSED [ 72%] 166s cyvcf2/tests/test_reader.py::test_set_reference PASSED [ 73%] 166s cyvcf2/tests/test_reader.py::test_set_alternates PASSED [ 74%] 166s cyvcf2/tests/test_reader.py::test_no_seqlen PASSED [ 75%] 166s cyvcf2/tests/test_reader.py::test_set_unknown_format PASSED [ 75%] 166s cyvcf2/tests/test_reader.py::test_invalid_header PASSED [ 76%] 166s cyvcf2/tests/test_reader.py::test_genotypes PASSED [ 77%] 166s cyvcf2/tests/test_reader.py::test_issue236 PASSED [ 78%] 166s cyvcf2/tests/test_reader.py::test_issue17_no_gt PASSED [ 79%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.vcf.gz] PASSED [ 80%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-multiallelic-homozygous-alt.vcf.gz] PASSED [ 81%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz0] PASSED [ 82%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz1] PASSED [ 83%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.vcf.gz] PASSED [ 83%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.bcf] PASSED [ 84%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.snpeff.bcf] PASSED [ 85%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[csi] PASSED [ 86%] 166s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[tbi] PASSED [ 87%] 167s cyvcf2/tests/test_reader.py::test_num_records_set_index_multiple_times PASSED [ 88%] 167s cyvcf2/tests/test_reader.py::test_num_records_set_wrong_index PASSED [ 89%] 167s cyvcf2/tests/test_reader.py::test_num_records_no_index[test-genotypes.vcf] PASSED [ 90%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithVcfFname_returnsUncompressedVcf PASSED [ 91%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFname_returnsCompressedBcf PASSED [ 91%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFnameAndUncompressedMode_returnsUncompressedBcf PASSED [ 92%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedBcfFname_returnsCompressedBcf PASSED [ 93%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedVcfFname_returnsCompressedVcf PASSED [ 94%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithStdOut_returnsUncompressedVcf PASSED [ 95%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithNonVcfName_returnsUncompressedVcf PASSED [ 96%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithIntFname_returnsUncompressedVcf PASSED [ 97%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithHandle_returnsUncompressedVcf PASSED [ 98%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithPosixPath_returnsUncompressedVcf PASSED [ 99%] 167s cyvcf2/tests/test_writer.py::TestFileModeInference::test_explicitMode_doesNotInferFromFname PASSED [100%] 167s 167s ============================= 112 passed in 2.64s ============================== 167s autopkgtest [17:13:28]: test run-unit-test: -----------------------] 168s run-unit-test PASS 168s autopkgtest [17:13:29]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 168s autopkgtest [17:13:29]: test autodep8-python3: preparing testbed 288s autopkgtest [17:15:29]: testbed dpkg architecture: arm64 289s autopkgtest [17:15:30]: testbed apt version: 2.7.12 289s autopkgtest [17:15:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 290s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 290s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 291s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 291s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 291s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 291s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 291s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 291s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 291s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 291s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 291s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 291s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 291s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 297s Fetched 9063 kB in 3s (3029 kB/s) 298s Reading package lists... 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 304s Calculating upgrade... 305s The following packages will be REMOVED: 305s libssl3 305s The following NEW packages will be installed: 305s libssl3t64 305s The following packages have been kept back: 305s curl 305s The following packages will be upgraded: 305s openssl 305s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 305s Need to get 2753 kB of archives. 305s After this operation, 72.7 kB of additional disk space will be used. 305s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 305s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 306s Fetched 2753 kB in 1s (3777 kB/s) 307s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 307s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 307s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 307s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 307s wget depends on libssl3 (>= 3.0.0). 307s u-boot-tools depends on libssl3 (>= 3.0.0). 307s tnftp depends on libssl3 (>= 3.0.0). 307s tcpdump depends on libssl3 (>= 3.0.0). 307s systemd-resolved depends on libssl3 (>= 3.0.0). 307s systemd depends on libssl3 (>= 3.0.0). 307s sudo depends on libssl3 (>= 3.0.0). 307s sbsigntool depends on libssl3 (>= 3.0.0). 307s rsync depends on libssl3 (>= 3.0.0). 307s python3-cryptography depends on libssl3 (>= 3.0.0). 307s openssh-server depends on libssl3 (>= 3.0.10). 307s openssh-client depends on libssl3 (>= 3.0.10). 307s mtd-utils depends on libssl3 (>= 3.0.0). 307s mokutil depends on libssl3 (>= 3.0.0). 307s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 307s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 307s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 307s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 307s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 307s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 307s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 307s libnvme1 depends on libssl3 (>= 3.0.0). 307s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 307s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 307s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 307s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 307s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 307s kmod depends on libssl3 (>= 3.0.0). 307s dhcpcd-base depends on libssl3 (>= 3.0.0). 307s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 307s 307s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 307s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 307s Selecting previously unselected package libssl3t64:arm64. 307s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 307s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 307s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 307s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 307s Setting up openssl (3.0.13-0ubuntu1) ... 307s Processing triggers for man-db (2.12.0-3) ... 308s Processing triggers for libc-bin (2.39-0ubuntu2) ... 309s Reading package lists... 310s Building dependency tree... 310s Reading state information... 311s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 312s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 312s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 312s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 312s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 316s Reading package lists... 316s Reading package lists... 317s Building dependency tree... 317s Reading state information... 318s Calculating upgrade... 319s The following packages have been kept back: 319s curl 319s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 320s Reading package lists... 320s Building dependency tree... 320s Reading state information... 322s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 326s Reading package lists... 327s Building dependency tree... 327s Reading state information... 328s Starting pkgProblemResolver with broken count: 0 328s Starting 2 pkgProblemResolver with broken count: 0 328s Done 330s The following additional packages will be installed: 330s libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 liblapack3 330s python3-all python3-click python3-colorama python3-coloredlogs 330s python3-cyvcf2 python3-humanfriendly python3-numpy 330s Suggested packages: 330s gcc gfortran python3-dev python3-pytest 330s The following NEW packages will be installed: 330s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 330s liblapack3 python3-all python3-click python3-colorama python3-coloredlogs 330s python3-cyvcf2 python3-humanfriendly python3-numpy 330s 0 upgraded, 14 newly installed, 0 to remove and 1 not upgraded. 330s Need to get 9139 kB/9140 kB of archives. 330s After this operation, 43.3 MB of additional disk space will be used. 330s Get:1 /tmp/autopkgtest.qxgPpF/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 330s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 331s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 331s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 331s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 331s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhts3 arm64 1.19+ds-1 [429 kB] 331s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 331s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 331s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 331s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 python3-click all 8.1.6-1 [79.0 kB] 331s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-humanfriendly all 10.0-3 [70.4 kB] 331s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 331s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 331s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cyvcf2 arm64 0.30.28-1 [1015 kB] 332s Fetched 9139 kB in 1s (7575 kB/s) 332s Selecting previously unselected package libblas3:arm64. 332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 332s Preparing to unpack .../00-libblas3_3.12.0-3_arm64.deb ... 332s Unpacking libblas3:arm64 (3.12.0-3) ... 333s Selecting previously unselected package libdeflate0:arm64. 333s Preparing to unpack .../01-libdeflate0_1.19-1_arm64.deb ... 333s Unpacking libdeflate0:arm64 (1.19-1) ... 333s Selecting previously unselected package libgfortran5:arm64. 333s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 333s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 333s Selecting previously unselected package libhtscodecs2:arm64. 333s Preparing to unpack .../03-libhtscodecs2_1.6.0-1_arm64.deb ... 333s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 333s Selecting previously unselected package libhts3:arm64. 333s Preparing to unpack .../04-libhts3_1.19+ds-1_arm64.deb ... 333s Unpacking libhts3:arm64 (1.19+ds-1) ... 333s Selecting previously unselected package liblapack3:arm64. 333s Preparing to unpack .../05-liblapack3_3.12.0-3_arm64.deb ... 333s Unpacking liblapack3:arm64 (3.12.0-3) ... 333s Selecting previously unselected package python3-all. 333s Preparing to unpack .../06-python3-all_3.12.1-0ubuntu2_arm64.deb ... 333s Unpacking python3-all (3.12.1-0ubuntu2) ... 333s Selecting previously unselected package python3-colorama. 333s Preparing to unpack .../07-python3-colorama_0.4.6-4_all.deb ... 333s Unpacking python3-colorama (0.4.6-4) ... 333s Selecting previously unselected package python3-click. 333s Preparing to unpack .../08-python3-click_8.1.6-1_all.deb ... 333s Unpacking python3-click (8.1.6-1) ... 333s Selecting previously unselected package python3-humanfriendly. 333s Preparing to unpack .../09-python3-humanfriendly_10.0-3_all.deb ... 333s Unpacking python3-humanfriendly (10.0-3) ... 333s Selecting previously unselected package python3-coloredlogs. 333s Preparing to unpack .../10-python3-coloredlogs_15.0.1-1_all.deb ... 333s Unpacking python3-coloredlogs (15.0.1-1) ... 333s Selecting previously unselected package python3-numpy. 333s Preparing to unpack .../11-python3-numpy_1%3a1.24.2-2_arm64.deb ... 333s Unpacking python3-numpy (1:1.24.2-2) ... 334s Selecting previously unselected package python3-cyvcf2. 334s Preparing to unpack .../12-python3-cyvcf2_0.30.28-1_arm64.deb ... 334s Unpacking python3-cyvcf2 (0.30.28-1) ... 334s Selecting previously unselected package autopkgtest-satdep. 334s Preparing to unpack .../13-2-autopkgtest-satdep.deb ... 334s Unpacking autopkgtest-satdep (0) ... 334s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 334s Setting up python3-colorama (0.4.6-4) ... 335s Setting up libdeflate0:arm64 (1.19-1) ... 335s Setting up python3-all (3.12.1-0ubuntu2) ... 335s Setting up python3-click (8.1.6-1) ... 335s Setting up libblas3:arm64 (3.12.0-3) ... 335s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 335s Setting up python3-humanfriendly (10.0-3) ... 336s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 336s Setting up python3-coloredlogs (15.0.1-1) ... 336s Setting up liblapack3:arm64 (3.12.0-3) ... 336s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 336s Setting up libhts3:arm64 (1.19+ds-1) ... 336s Setting up python3-numpy (1:1.24.2-2) ... 341s Setting up python3-cyvcf2 (0.30.28-1) ... 342s Setting up autopkgtest-satdep (0) ... 342s Processing triggers for man-db (2.12.0-3) ... 342s Processing triggers for libc-bin (2.39-0ubuntu2) ... 348s (Reading database ... 77076 files and directories currently installed.) 348s Removing autopkgtest-satdep (0) ... 350s autopkgtest [17:16:31]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done 350s autopkgtest [17:16:31]: test autodep8-python3: [----------------------- 351s Testing with python3.12: 351s 351s autopkgtest [17:16:32]: test autodep8-python3: -----------------------] 352s autodep8-python3 PASS (superficial) 352s autopkgtest [17:16:33]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 353s autopkgtest [17:16:34]: @@@@@@@@@@@@@@@@@@@@ summary 353s run-unit-test PASS 353s autodep8-python3 PASS (superficial) 364s Creating nova instance adt-noble-arm64-cyvcf2-20240316-171041-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)... 364s Creating nova instance adt-noble-arm64-cyvcf2-20240316-171041-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...