0s autopkgtest [05:16:06]: starting date and time: 2024-03-17 05:16:06+0000 0s autopkgtest [05:16:06]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [05:16:06]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p9en5ka4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:nodejs,src:libuv1,src:openssl --apt-upgrade cwl-utils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=nodejs/18.19.1+dfsg-6ubuntu1 libuv1/1.48.0-1.1 openssl/3.0.13-0ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-23.secgroup --name adt-noble-arm64-cwl-utils-20240317-051606-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 72s autopkgtest [05:17:18]: testbed dpkg architecture: arm64 72s autopkgtest [05:17:18]: testbed apt version: 2.7.12 72s autopkgtest [05:17:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 72s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 73s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [482 kB] 73s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3662 kB] 73s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 73s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 73s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [652 kB] 73s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 73s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 73s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 73s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4030 kB] 73s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 73s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.4 kB] 73s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 75s Fetched 9102 kB in 2s (5578 kB/s) 75s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Calculating upgrade... 80s The following packages will be REMOVED: 80s libssl3 80s The following NEW packages will be installed: 80s libssl3t64 80s The following packages will be upgraded: 80s openssl 80s 1 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 80s Need to get 2753 kB of archives. 80s After this operation, 72.7 kB of additional disk space will be used. 80s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 80s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 81s Fetched 2753 kB in 1s (3518 kB/s) 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 82s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 82s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 82s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 82s wget depends on libssl3 (>= 3.0.0). 82s u-boot-tools depends on libssl3 (>= 3.0.0). 82s tnftp depends on libssl3 (>= 3.0.0). 82s tcpdump depends on libssl3 (>= 3.0.0). 82s systemd-resolved depends on libssl3 (>= 3.0.0). 82s systemd depends on libssl3 (>= 3.0.0). 82s sudo depends on libssl3 (>= 3.0.0). 82s sbsigntool depends on libssl3 (>= 3.0.0). 82s rsync depends on libssl3 (>= 3.0.0). 82s python3-cryptography depends on libssl3 (>= 3.0.0). 82s openssh-server depends on libssl3 (>= 3.0.10). 82s openssh-client depends on libssl3 (>= 3.0.10). 82s mtd-utils depends on libssl3 (>= 3.0.0). 82s mokutil depends on libssl3 (>= 3.0.0). 82s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 82s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 82s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 82s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 82s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 82s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 82s libnvme1 depends on libssl3 (>= 3.0.0). 82s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 82s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 82s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 82s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 82s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 82s kmod depends on libssl3 (>= 3.0.0). 82s dhcpcd-base depends on libssl3 (>= 3.0.0). 82s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 82s 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 82s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 82s Selecting previously unselected package libssl3t64:arm64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 82s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 82s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 82s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 82s Setting up openssl (3.0.13-0ubuntu1) ... 82s Processing triggers for man-db (2.12.0-3) ... 83s Processing triggers for libc-bin (2.39-0ubuntu2) ... 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s sh: Attempting to set up Debian/Ubuntu apt sources automatically 90s sh: Distribution appears to be Ubuntu 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s eatmydata is already the newest version (131-1). 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s dbus is already the newest version (1.14.10-4ubuntu1). 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s rng-tools-debian is already the newest version (2.4). 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s The following packages will be REMOVED: 94s cloud-init* python3-configobj* python3-debconf* 95s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 95s After this operation, 3252 kB disk space will be freed. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 95s Removing cloud-init (24.1.1-0ubuntu1) ... 96s Removing python3-configobj (5.0.8-3) ... 96s Removing python3-debconf (1.5.86) ... 96s Processing triggers for man-db (2.12.0-3) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 96s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 97s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 97s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 97s invoke-rc.d: policy-rc.d denied execution of try-restart. 97s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s linux-generic is already the newest version (6.8.0-11.11+1). 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 99s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 99s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 101s Reading package lists... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Calculating upgrade... 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s autopkgtest [05:17:50]: rebooting testbed after setup commands that affected boot 268s autopkgtest [05:20:34]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 270s autopkgtest [05:20:36]: @@@@@@@@@@@@@@@@@@@@ apt-source cwl-utils 274s Get:1 http://ftpmaster.internal/ubuntu noble/universe cwl-utils 0.32-1 (dsc) [2459 B] 274s Get:2 http://ftpmaster.internal/ubuntu noble/universe cwl-utils 0.32-1 (tar) [304 kB] 274s Get:3 http://ftpmaster.internal/ubuntu noble/universe cwl-utils 0.32-1 (diff) [3584 B] 274s gpgv: Signature made Tue Jan 23 11:29:08 2024 UTC 274s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 274s gpgv: Can't check signature: No public key 274s dpkg-source: warning: cannot verify inline signature for ./cwl-utils_0.32-1.dsc: no acceptable signature found 274s autopkgtest [05:20:40]: testing package cwl-utils version 0.32-1 274s autopkgtest [05:20:40]: build not needed 275s autopkgtest [05:20:41]: test run-tests: preparing testbed 276s Reading package lists... 276s Building dependency tree... 276s Reading state information... 277s Starting pkgProblemResolver with broken count: 0 277s Starting 2 pkgProblemResolver with broken count: 0 277s Done 277s The following additional packages will be installed: 277s cwl-upgrader cwl-utils cwlformat fonts-glyphicons-halflings libc-ares2 277s libjs-bootstrap libnode108 node-acorn node-busboy node-cjs-module-lexer 277s node-undici node-xtend nodejs python3-cachecontrol python3-cwl-utils 277s python3-execnet python3-filelock python3-iniconfig python3-isodate 277s python3-mistune python3-mock python3-msgpack python3-mypy-extensions 277s python3-packaging python3-pluggy python3-pytest python3-pytest-mock 277s python3-pytest-xdist python3-rdflib python3-ruamel.yaml 277s python3-ruamel.yaml.clib python3-schema-salad 277s Suggested packages: 277s cwltool npm execnet-doc python-mock-doc python-pytest-mock-doc 277s python-rdflib-doc 277s Recommended packages: 277s nodejs-doc python3-sparqlwrapper python3-html5lib cwltool black 277s The following NEW packages will be installed: 277s autopkgtest-satdep cwl-upgrader cwl-utils cwlformat 277s fonts-glyphicons-halflings libc-ares2 libjs-bootstrap libnode108 node-acorn 277s node-busboy node-cjs-module-lexer node-undici node-xtend nodejs 277s python3-cachecontrol python3-cwl-utils python3-execnet python3-filelock 277s python3-iniconfig python3-isodate python3-mistune python3-mock 277s python3-msgpack python3-mypy-extensions python3-packaging python3-pluggy 277s python3-pytest python3-pytest-mock python3-pytest-xdist python3-rdflib 277s python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad 277s 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. 277s Need to get 15.2 MB/15.2 MB of archives. 277s After this operation, 74.2 MB of additional disk space will be used. 277s Get:1 /tmp/autopkgtest.hWTPqd/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 278s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8-1 [187 kB] 278s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ruamel.yaml all 0.17.21-1 [86.6 kB] 278s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3-msgpack arm64 1.0.3-3build1 [93.0 kB] 278s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cachecontrol all 0.14.0-1 [19.0 kB] 278s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mistune all 3.0.2-1 [32.8 kB] 278s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mypy-extensions all 1.0.0-1 [6148 B] 278s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-isodate all 0.6.1-2 [24.3 kB] 278s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rdflib all 6.1.1-3 [362 kB] 278s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-filelock all 3.13.1-1 [10.8 kB] 278s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 278s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 278s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-schema-salad arm64 8.5.20240102191335-1 [1433 kB] 278s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 cwl-upgrader all 1.2.11-1 [16.0 kB] 278s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 278s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cwl-utils all 0.32-1 [118 kB] 278s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 cwl-utils all 0.32-1 [2824 B] 278s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 cwlformat all 2022.02.18-2 [7442 B] 278s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libc-ares2 arm64 1.27.0-1 [74.1 kB] 278s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 node-xtend all 4.0.2-3 [3902 B] 278s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 nodejs arm64 18.19.1+dfsg-2ubuntu4 [306 kB] 278s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [115 kB] 278s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 node-cjs-module-lexer all 1.2.3+dfsg-1 [32.1 kB] 278s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 node-busboy all 1.6.0+~cs2.6.0-2 [17.3 kB] 278s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 node-undici all 5.26.3+dfsg1+~cs23.10.12-2 [325 kB] 278s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 libnode108 arm64 18.19.1+dfsg-2ubuntu4 [11.2 MB] 279s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-execnet all 2.0.0-2 [33.6 kB] 279s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 279s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 279s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 279s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-mock all 3.12.0-1.1 [11.3 kB] 279s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-xdist all 3.4.0-1 [32.0 kB] 279s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mock all 5.1.0-1 [64.1 kB] 279s Fetched 15.2 MB in 1s (13.8 MB/s) 279s Selecting previously unselected package python3-ruamel.yaml.clib:arm64. 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 280s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8-1_arm64.deb ... 280s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8-1) ... 280s Selecting previously unselected package python3-ruamel.yaml. 280s Preparing to unpack .../01-python3-ruamel.yaml_0.17.21-1_all.deb ... 280s Unpacking python3-ruamel.yaml (0.17.21-1) ... 280s Selecting previously unselected package python3-msgpack. 280s Preparing to unpack .../02-python3-msgpack_1.0.3-3build1_arm64.deb ... 280s Unpacking python3-msgpack (1.0.3-3build1) ... 280s Selecting previously unselected package python3-cachecontrol. 280s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 280s Unpacking python3-cachecontrol (0.14.0-1) ... 280s Selecting previously unselected package python3-mistune. 280s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 280s Unpacking python3-mistune (3.0.2-1) ... 280s Selecting previously unselected package python3-mypy-extensions. 280s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 280s Unpacking python3-mypy-extensions (1.0.0-1) ... 280s Selecting previously unselected package python3-isodate. 280s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 280s Unpacking python3-isodate (0.6.1-2) ... 280s Selecting previously unselected package python3-rdflib. 280s Preparing to unpack .../07-python3-rdflib_6.1.1-3_all.deb ... 280s Unpacking python3-rdflib (6.1.1-3) ... 280s Selecting previously unselected package python3-filelock. 281s Preparing to unpack .../08-python3-filelock_3.13.1-1_all.deb ... 281s Unpacking python3-filelock (3.13.1-1) ... 281s Selecting previously unselected package fonts-glyphicons-halflings. 281s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 281s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 281s Selecting previously unselected package libjs-bootstrap. 281s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 281s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 281s Selecting previously unselected package python3-schema-salad. 281s Preparing to unpack .../11-python3-schema-salad_8.5.20240102191335-1_arm64.deb ... 281s Unpacking python3-schema-salad (8.5.20240102191335-1) ... 281s Selecting previously unselected package cwl-upgrader. 281s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 281s Unpacking cwl-upgrader (1.2.11-1) ... 281s Selecting previously unselected package python3-packaging. 281s Preparing to unpack .../13-python3-packaging_23.2-1_all.deb ... 281s Unpacking python3-packaging (23.2-1) ... 281s Selecting previously unselected package python3-cwl-utils. 281s Preparing to unpack .../14-python3-cwl-utils_0.32-1_all.deb ... 281s Unpacking python3-cwl-utils (0.32-1) ... 281s Selecting previously unselected package cwl-utils. 281s Preparing to unpack .../15-cwl-utils_0.32-1_all.deb ... 281s Unpacking cwl-utils (0.32-1) ... 281s Selecting previously unselected package cwlformat. 281s Preparing to unpack .../16-cwlformat_2022.02.18-2_all.deb ... 281s Unpacking cwlformat (2022.02.18-2) ... 281s Selecting previously unselected package libc-ares2:arm64. 281s Preparing to unpack .../17-libc-ares2_1.27.0-1_arm64.deb ... 281s Unpacking libc-ares2:arm64 (1.27.0-1) ... 281s Selecting previously unselected package node-xtend. 281s Preparing to unpack .../18-node-xtend_4.0.2-3_all.deb ... 281s Unpacking node-xtend (4.0.2-3) ... 281s Selecting previously unselected package nodejs. 281s Preparing to unpack .../19-nodejs_18.19.1+dfsg-2ubuntu4_arm64.deb ... 281s Unpacking nodejs (18.19.1+dfsg-2ubuntu4) ... 281s Selecting previously unselected package node-acorn. 281s Preparing to unpack .../20-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... 281s Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... 281s Selecting previously unselected package node-cjs-module-lexer. 281s Preparing to unpack .../21-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... 281s Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... 281s Selecting previously unselected package node-busboy. 281s Preparing to unpack .../22-node-busboy_1.6.0+~cs2.6.0-2_all.deb ... 281s Unpacking node-busboy (1.6.0+~cs2.6.0-2) ... 281s Selecting previously unselected package node-undici. 281s Preparing to unpack .../23-node-undici_5.26.3+dfsg1+~cs23.10.12-2_all.deb ... 281s Unpacking node-undici (5.26.3+dfsg1+~cs23.10.12-2) ... 281s Selecting previously unselected package libnode108:arm64. 281s Preparing to unpack .../24-libnode108_18.19.1+dfsg-2ubuntu4_arm64.deb ... 281s Unpacking libnode108:arm64 (18.19.1+dfsg-2ubuntu4) ... 282s Selecting previously unselected package python3-execnet. 282s Preparing to unpack .../25-python3-execnet_2.0.0-2_all.deb ... 282s Unpacking python3-execnet (2.0.0-2) ... 282s Selecting previously unselected package python3-iniconfig. 282s Preparing to unpack .../26-python3-iniconfig_1.1.1-2_all.deb ... 282s Unpacking python3-iniconfig (1.1.1-2) ... 282s Selecting previously unselected package python3-pluggy. 282s Preparing to unpack .../27-python3-pluggy_1.4.0-1_all.deb ... 282s Unpacking python3-pluggy (1.4.0-1) ... 282s Selecting previously unselected package python3-pytest. 282s Preparing to unpack .../28-python3-pytest_7.4.4-1_all.deb ... 282s Unpacking python3-pytest (7.4.4-1) ... 282s Selecting previously unselected package python3-pytest-mock. 282s Preparing to unpack .../29-python3-pytest-mock_3.12.0-1.1_all.deb ... 282s Unpacking python3-pytest-mock (3.12.0-1.1) ... 282s Selecting previously unselected package python3-pytest-xdist. 282s Preparing to unpack .../30-python3-pytest-xdist_3.4.0-1_all.deb ... 282s Unpacking python3-pytest-xdist (3.4.0-1) ... 282s Selecting previously unselected package python3-mock. 282s Preparing to unpack .../31-python3-mock_5.1.0-1_all.deb ... 282s Unpacking python3-mock (5.1.0-1) ... 282s Selecting previously unselected package autopkgtest-satdep. 282s Preparing to unpack .../32-1-autopkgtest-satdep.deb ... 282s Unpacking autopkgtest-satdep (0) ... 282s Setting up python3-iniconfig (1.1.1-2) ... 282s Setting up python3-filelock (3.13.1-1) ... 282s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 282s Setting up python3-mypy-extensions (1.0.0-1) ... 283s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8-1) ... 283s Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... 283s Setting up libc-ares2:arm64 (1.27.0-1) ... 283s Setting up python3-mock (5.1.0-1) ... 283s Setting up python3-isodate (0.6.1-2) ... 283s Setting up python3-packaging (23.2-1) ... 283s Setting up python3-pluggy (1.4.0-1) ... 283s Setting up python3-ruamel.yaml (0.17.21-1) ... 284s Setting up python3-rdflib (6.1.1-3) ... 284s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' 284s """Converts the given graph into a networkx.MultiDiGraph. 284s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' 284s """Converts the given graph into a networkx.DiGraph. 284s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' 284s """Converts the given graph into a networkx.Graph. 284s Setting up python3-msgpack (1.0.3-3build1) ... 284s Setting up python3-cachecontrol (0.14.0-1) ... 284s Setting up node-xtend (4.0.2-3) ... 284s Setting up python3-execnet (2.0.0-2) ... 284s Setting up python3-mistune (3.0.2-1) ... 285s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 285s Setting up node-busboy (1.6.0+~cs2.6.0-2) ... 285s Setting up python3-pytest (7.4.4-1) ... 285s Setting up python3-schema-salad (8.5.20240102191335-1) ... 285s Setting up cwlformat (2022.02.18-2) ... 286s Setting up cwl-upgrader (1.2.11-1) ... 286s Setting up node-undici (5.26.3+dfsg1+~cs23.10.12-2) ... 286s Setting up python3-pytest-mock (3.12.0-1.1) ... 286s Setting up python3-pytest-xdist (3.4.0-1) ... 286s Setting up python3-cwl-utils (0.32-1) ... 287s Setting up cwl-utils (0.32-1) ... 287s Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... 287s Setting up libnode108:arm64 (18.19.1+dfsg-2ubuntu4) ... 287s Setting up nodejs (18.19.1+dfsg-2ubuntu4) ... 287s update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode 287s Setting up autopkgtest-satdep (0) ... 287s Processing triggers for libc-bin (2.39-0ubuntu2) ... 287s Processing triggers for man-db (2.12.0-3) ... 294s (Reading database ... 76222 files and directories currently installed.) 294s Removing autopkgtest-satdep (0) ... 295s autopkgtest [05:21:01]: test run-tests: [----------------------- 295s + pkg=cwl-utils 295s + [ /tmp/autopkgtest.hWTPqd/autopkgtest_tmp = ] 295s + cd /tmp/autopkgtest.hWTPqd/autopkgtest_tmp 295s + py.test-3 -rs --numprocesses=auto --pyargs cwl_utils 297s ============================= test session starts ============================== 297s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 297s rootdir: /tmp/autopkgtest.hWTPqd/autopkgtest_tmp 297s plugins: mock-3.12.0, xdist-3.4.0 297s created: 2/2 workers 297s 2 workers [184 items] 297s 298s ....ssss.sssssssssss.................................s................ss [ 39%] 301s s....................................................................... [ 78%] 306s ........................................ [100%] 306s =============================== warnings summary =============================== 306s ../../../usr/lib/python3/dist-packages/cwl_utils/tests/util.py:6 306s ../../../usr/lib/python3/dist-packages/cwl_utils/tests/util.py:6 306s /usr/lib/python3/dist-packages/cwl_utils/tests/util.py:6: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 306s from pkg_resources import Requirement, ResolutionError, resource_filename 306s 306s ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871 306s ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871 306s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('ruamel')`. 306s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 306s declare_namespace(pkg) 306s 306s ../../../usr/lib/python3/dist-packages/cwlformat/formatter.py:23 306s ../../../usr/lib/python3/dist-packages/cwlformat/formatter.py:23 306s /usr/lib/python3/dist-packages/cwlformat/formatter.py:23: DeprecationWarning: read_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. 306s key_order_dict = yaml.load(read_text("cwlformat", "keyorder.yml")) 306s 306s ../../../usr/lib/python3.12/importlib/resources/_legacy.py:79 306s ../../../usr/lib/python3.12/importlib/resources/_legacy.py:79 306s /usr/lib/python3.12/importlib/resources/_legacy.py:79: DeprecationWarning: open_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. 306s with open_text(package, resource, encoding, errors) as fp: 306s 306s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 306s =========================== short test summary info ============================ 306s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the docker executable on the system path. 306s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the podman executable on the system path. 306s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the singularity executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the docker executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the podman executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the singularity executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the docker executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the podman executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the singularity executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the docker executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the podman executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the singularity executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:156: Requires the singularity executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:78: Requires the podman executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:104: Requires the udocker executable on the system path. 306s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:130: Requires the singularity executable on the system path. 306s ================= 165 passed, 19 skipped, 8 warnings in 10.08s ================= 306s autopkgtest [05:21:12]: test run-tests: -----------------------] 307s run-tests PASS 307s autopkgtest [05:21:13]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 307s autopkgtest [05:21:13]: test command1: preparing testbed 407s autopkgtest [05:22:53]: testbed dpkg architecture: arm64 407s autopkgtest [05:22:53]: testbed apt version: 2.7.12 407s autopkgtest [05:22:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 408s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 408s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [482 kB] 408s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 408s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3662 kB] 409s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 409s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [652 kB] 409s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 409s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 409s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 409s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4030 kB] 409s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 409s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.4 kB] 409s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 411s Fetched 9102 kB in 2s (4507 kB/s) 411s Reading package lists... 416s Reading package lists... 416s Building dependency tree... 416s Reading state information... 417s Calculating upgrade... 417s The following packages will be REMOVED: 417s libssl3 417s The following NEW packages will be installed: 417s libssl3t64 417s The following packages will be upgraded: 417s openssl 418s 1 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 418s Need to get 2753 kB of archives. 418s After this operation, 72.7 kB of additional disk space will be used. 418s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 418s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 419s Fetched 2753 kB in 1s (3842 kB/s) 420s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 420s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 420s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 420s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 420s wget depends on libssl3 (>= 3.0.0). 420s u-boot-tools depends on libssl3 (>= 3.0.0). 420s tnftp depends on libssl3 (>= 3.0.0). 420s tcpdump depends on libssl3 (>= 3.0.0). 420s systemd-resolved depends on libssl3 (>= 3.0.0). 420s systemd depends on libssl3 (>= 3.0.0). 420s sudo depends on libssl3 (>= 3.0.0). 420s sbsigntool depends on libssl3 (>= 3.0.0). 420s rsync depends on libssl3 (>= 3.0.0). 420s python3-cryptography depends on libssl3 (>= 3.0.0). 420s openssh-server depends on libssl3 (>= 3.0.10). 420s openssh-client depends on libssl3 (>= 3.0.10). 420s mtd-utils depends on libssl3 (>= 3.0.0). 420s mokutil depends on libssl3 (>= 3.0.0). 420s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 420s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 420s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 420s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 420s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 420s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 420s libnvme1 depends on libssl3 (>= 3.0.0). 420s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 420s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 420s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 420s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 420s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 420s kmod depends on libssl3 (>= 3.0.0). 420s dhcpcd-base depends on libssl3 (>= 3.0.0). 420s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 420s 420s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 420s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 420s Selecting previously unselected package libssl3t64:arm64. 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 421s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 421s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 421s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 421s Setting up openssl (3.0.13-0ubuntu1) ... 421s Processing triggers for man-db (2.12.0-3) ... 422s Processing triggers for libc-bin (2.39-0ubuntu2) ... 422s Reading package lists... 422s Building dependency tree... 422s Reading state information... 423s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 424s sh: Attempting to set up Debian/Ubuntu apt sources automatically 424s sh: Distribution appears to be Ubuntu 425s Reading package lists... 426s Building dependency tree... 426s Reading state information... 428s eatmydata is already the newest version (131-1). 428s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 428s Reading package lists... 428s Building dependency tree... 428s Reading state information... 429s dbus is already the newest version (1.14.10-4ubuntu1). 429s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 429s Reading package lists... 429s Building dependency tree... 429s Reading state information... 430s rng-tools-debian is already the newest version (2.4). 430s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 430s Reading package lists... 430s Building dependency tree... 430s Reading state information... 431s The following packages will be REMOVED: 431s cloud-init* python3-configobj* python3-debconf* 431s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 431s After this operation, 3252 kB disk space will be freed. 431s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 431s Removing cloud-init (24.1.1-0ubuntu1) ... 432s Removing python3-configobj (5.0.8-3) ... 432s Removing python3-debconf (1.5.86) ... 433s Processing triggers for man-db (2.12.0-3) ... 433s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 433s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 434s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 434s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 434s invoke-rc.d: policy-rc.d denied execution of try-restart. 435s Reading package lists... 435s Building dependency tree... 435s Reading state information... 436s linux-generic is already the newest version (6.8.0-11.11+1). 436s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 437s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 437s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 437s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 440s Reading package lists... 440s Reading package lists... 440s Building dependency tree... 440s Reading state information... 441s Calculating upgrade... 441s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 441s Reading package lists... 441s Building dependency tree... 441s Reading state information... 442s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 443s autopkgtest [05:23:29]: rebooting testbed after setup commands that affected boot 604s Reading package lists... 604s Building dependency tree... 604s Reading state information... 605s Starting pkgProblemResolver with broken count: 0 605s Starting 2 pkgProblemResolver with broken count: 0 605s Done 605s The following additional packages will be installed: 605s cwl-upgrader cwl-utils fonts-glyphicons-halflings libjs-bootstrap 605s python3-cachecontrol python3-cwl-utils python3-filelock python3-isodate 605s python3-mistune python3-msgpack python3-mypy-extensions python3-packaging 605s python3-rdflib python3-ruamel.yaml python3-ruamel.yaml.clib 605s python3-schema-salad 605s Suggested packages: 605s cwltool cwlformat python-rdflib-doc 605s Recommended packages: 605s python3-sparqlwrapper python3-html5lib cwltool black 606s The following NEW packages will be installed: 606s autopkgtest-satdep cwl-upgrader cwl-utils fonts-glyphicons-halflings 606s libjs-bootstrap python3-cachecontrol python3-cwl-utils python3-filelock 606s python3-isodate python3-mistune python3-msgpack python3-mypy-extensions 606s python3-packaging python3-rdflib python3-ruamel.yaml 606s python3-ruamel.yaml.clib python3-schema-salad 606s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 606s Need to get 2680 kB/2681 kB of archives. 606s After this operation, 20.4 MB of additional disk space will be used. 606s Get:1 /tmp/autopkgtest.hWTPqd/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 606s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8-1 [187 kB] 606s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ruamel.yaml all 0.17.21-1 [86.6 kB] 606s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3-msgpack arm64 1.0.3-3build1 [93.0 kB] 606s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cachecontrol all 0.14.0-1 [19.0 kB] 606s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mistune all 3.0.2-1 [32.8 kB] 606s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mypy-extensions all 1.0.0-1 [6148 B] 606s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-isodate all 0.6.1-2 [24.3 kB] 606s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rdflib all 6.1.1-3 [362 kB] 606s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-filelock all 3.13.1-1 [10.8 kB] 606s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 606s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 606s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-schema-salad arm64 8.5.20240102191335-1 [1433 kB] 606s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 cwl-upgrader all 1.2.11-1 [16.0 kB] 606s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 606s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cwl-utils all 0.32-1 [118 kB] 606s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 cwl-utils all 0.32-1 [2824 B] 608s Fetched 2680 kB in 1s (3440 kB/s) 608s Selecting previously unselected package python3-ruamel.yaml.clib:arm64. 609s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 609s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8-1_arm64.deb ... 609s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8-1) ... 609s Selecting previously unselected package python3-ruamel.yaml. 609s Preparing to unpack .../01-python3-ruamel.yaml_0.17.21-1_all.deb ... 609s Unpacking python3-ruamel.yaml (0.17.21-1) ... 609s Selecting previously unselected package python3-msgpack. 609s Preparing to unpack .../02-python3-msgpack_1.0.3-3build1_arm64.deb ... 609s Unpacking python3-msgpack (1.0.3-3build1) ... 609s Selecting previously unselected package python3-cachecontrol. 609s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 609s Unpacking python3-cachecontrol (0.14.0-1) ... 609s Selecting previously unselected package python3-mistune. 609s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 609s Unpacking python3-mistune (3.0.2-1) ... 609s Selecting previously unselected package python3-mypy-extensions. 609s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 609s Unpacking python3-mypy-extensions (1.0.0-1) ... 609s Selecting previously unselected package python3-isodate. 609s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 609s Unpacking python3-isodate (0.6.1-2) ... 609s Selecting previously unselected package python3-rdflib. 609s Preparing to unpack .../07-python3-rdflib_6.1.1-3_all.deb ... 609s Unpacking python3-rdflib (6.1.1-3) ... 609s Selecting previously unselected package python3-filelock. 609s Preparing to unpack .../08-python3-filelock_3.13.1-1_all.deb ... 609s Unpacking python3-filelock (3.13.1-1) ... 609s Selecting previously unselected package fonts-glyphicons-halflings. 609s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 609s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 609s Selecting previously unselected package libjs-bootstrap. 609s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 609s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 609s Selecting previously unselected package python3-schema-salad. 609s Preparing to unpack .../11-python3-schema-salad_8.5.20240102191335-1_arm64.deb ... 609s Unpacking python3-schema-salad (8.5.20240102191335-1) ... 610s Selecting previously unselected package cwl-upgrader. 610s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 610s Unpacking cwl-upgrader (1.2.11-1) ... 610s Selecting previously unselected package python3-packaging. 610s Preparing to unpack .../13-python3-packaging_23.2-1_all.deb ... 610s Unpacking python3-packaging (23.2-1) ... 610s Selecting previously unselected package python3-cwl-utils. 610s Preparing to unpack .../14-python3-cwl-utils_0.32-1_all.deb ... 610s Unpacking python3-cwl-utils (0.32-1) ... 610s Selecting previously unselected package cwl-utils. 610s Preparing to unpack .../15-cwl-utils_0.32-1_all.deb ... 610s Unpacking cwl-utils (0.32-1) ... 610s Selecting previously unselected package autopkgtest-satdep. 610s Preparing to unpack .../16-2-autopkgtest-satdep.deb ... 610s Unpacking autopkgtest-satdep (0) ... 610s Setting up python3-filelock (3.13.1-1) ... 610s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 610s Setting up python3-mypy-extensions (1.0.0-1) ... 610s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8-1) ... 610s Setting up python3-isodate (0.6.1-2) ... 611s Setting up python3-packaging (23.2-1) ... 611s Setting up python3-ruamel.yaml (0.17.21-1) ... 611s Setting up python3-rdflib (6.1.1-3) ... 611s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' 611s """Converts the given graph into a networkx.MultiDiGraph. 611s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' 611s """Converts the given graph into a networkx.DiGraph. 611s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' 611s """Converts the given graph into a networkx.Graph. 611s Setting up python3-msgpack (1.0.3-3build1) ... 612s Setting up python3-cachecontrol (0.14.0-1) ... 612s Setting up python3-mistune (3.0.2-1) ... 612s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 612s Setting up python3-schema-salad (8.5.20240102191335-1) ... 613s Setting up cwl-upgrader (1.2.11-1) ... 613s Setting up python3-cwl-utils (0.32-1) ... 614s Setting up cwl-utils (0.32-1) ... 614s Setting up autopkgtest-satdep (0) ... 614s Processing triggers for man-db (2.12.0-3) ... 619s (Reading database ... 75401 files and directories currently installed.) 619s Removing autopkgtest-satdep (0) ... 621s autopkgtest [05:26:27]: test command1: cwl-cite-extract --help && cwl-docker-extract --help && cwl-expression-refactor --help && cwl-normalizer --help 621s autopkgtest [05:26:27]: test command1: [----------------------- 622s usage: cwl-cite-extract [-h] input 622s 622s Print information about software used in a CWL document (Workflow or 622s CommandLineTool). For CWL Workflows, all steps will also be searched 622s (recursively). 622s 622s positional arguments: 622s input Input CWL document (CWL Workflow or CWL CommandLineTool) 622s 622s options: 622s -h, --help show this help message and exit 622s usage: cwl-docker-extract [-h] [--dir DIR] [-s] 622s [--container-engine CONTAINER_ENGINE] 622s [--force-download] 622s input 622s 622s Save container images specified in a CWL document (Workflow or 622s CommandLineTool). For CWL Workflows, all steps will also be searched 622s (recursively). 622s 622s positional arguments: 622s input Input CWL document (CWL Workflow or CWL 622s CommandLineTool) 622s 622s options: 622s -h, --help show this help message and exit 622s --dir DIR Directory in which to save images 622s -s, --singularity Use singularity to pull the image 622s --container-engine CONTAINER_ENGINE 622s Specify which command to use to run OCI containers. 622s Defaults to 'docker' (or 'singularity' if 622s --singularity/-s is passed). 622s --force-download Force pulling a newer container. 622s usage: cwl-expression-refactor [-h] [--etools] [--skip-some1] [--skip-some2] 622s dir inputs [inputs ...] 622s 622s Tool to refactor CWL documents so that any CWL expression are separate steps 622s as either ExpressionTools or CommandLineTools. Exit code 7 means a single CWL 622s document was provided but it did not need modification. 622s 622s positional arguments: 622s dir Directory in which to save converted files 622s inputs One or more CWL documents. 622s 622s options: 622s -h, --help show this help message and exit 622s --etools Output ExpressionTools, don't go all the way to 622s CommandLineTools. 622s --skip-some1 Don't process CommandLineTool.inputs.inputBinding and 622s CommandLineTool.arguments sections. 622s --skip-some2 Don't process CommandLineTool.outputEval or 622s CommandLineTool.requirements.InitialWorkDirRequirement. 623s usage: cwl-normalizer [-h] [--etools] [--skip-some1] [--skip-some2] 623s [--no-expression-refactoring] 623s dir inputs [inputs ...] 623s 623s Normalizes CWL documents. Will upgrade to CWL v1.2, and pack the result. Can 623s optionally refactor out CWL expressions. 623s 623s positional arguments: 623s dir Directory in which to save converted files 623s inputs One or more CWL documents. 623s 623s options: 623s -h, --help show this help message and exit 623s --etools Output ExpressionTools, don't go all the way to 623s CommandLineTools. 623s --skip-some1 Don't process CommandLineTool.inputs.inputBinding and 623s CommandLineTool.arguments sections. 623s --skip-some2 Don't process CommandLineTool.outputEval or CommandLin 623s eTool.requirements.InitialWorkDirRequirement. 623s --no-expression-refactoring 623s Don't do any CWL expression refactoring. 623s autopkgtest [05:26:29]: test command1: -----------------------] 624s command1 PASS (superficial) 624s autopkgtest [05:26:30]: test command1: - - - - - - - - - - results - - - - - - - - - - 624s autopkgtest [05:26:30]: test command2: preparing testbed 625s Reading package lists... 626s Building dependency tree... 626s Reading state information... 626s Starting pkgProblemResolver with broken count: 0 626s Starting 2 pkgProblemResolver with broken count: 0 626s Done 627s The following additional packages will be installed: 627s cwlformat 627s The following NEW packages will be installed: 627s autopkgtest-satdep cwlformat 627s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 627s Need to get 7442 B/8154 B of archives. 627s After this operation, 39.9 kB of additional disk space will be used. 627s Get:1 /tmp/autopkgtest.hWTPqd/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 627s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 cwlformat all 2022.02.18-2 [7442 B] 628s Fetched 7442 B in 0s (45.3 kB/s) 628s Selecting previously unselected package cwlformat. 628s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75401 files and directories currently installed.) 628s Preparing to unpack .../cwlformat_2022.02.18-2_all.deb ... 628s Unpacking cwlformat (2022.02.18-2) ... 628s Selecting previously unselected package autopkgtest-satdep. 628s Preparing to unpack .../3-autopkgtest-satdep.deb ... 628s Unpacking autopkgtest-satdep (0) ... 628s Setting up cwlformat (2022.02.18-2) ... 628s Setting up autopkgtest-satdep (0) ... 631s (Reading database ... 75419 files and directories currently installed.) 631s Removing autopkgtest-satdep (0) ... 631s autopkgtest [05:26:37]: test command2: cwl-graph-split --help 631s autopkgtest [05:26:37]: test command2: [----------------------- 632s usage: cwl-graph-split [-h] [-m MAINFILE] [-f {json,yaml}] [-p] [-C OUTDIR] 632s cwlfile 632s 632s Split a packed CWL document. 632s 632s positional arguments: 632s cwlfile 632s 632s options: 632s -h, --help show this help message and exit 632s -m MAINFILE, --mainfile MAINFILE 632s Specify the name of the main document. 632s -f {json,yaml}, --output-format {json,yaml} 632s Specify the format of the output CWL files. 632s -p, --pretty Beautify the output CWL document, only works with yaml 632s format. 632s -C OUTDIR, --outdir OUTDIR 632s Output folder for the unpacked CWL files. 632s autopkgtest [05:26:38]: test command2: -----------------------] 633s autopkgtest [05:26:39]: test command2: - - - - - - - - - - results - - - - - - - - - - 633s command2 PASS (superficial) 633s autopkgtest [05:26:39]: @@@@@@@@@@@@@@@@@@@@ summary 633s run-tests PASS 633s command1 PASS (superficial) 633s command2 PASS (superficial) 644s Creating nova instance adt-noble-arm64-cwl-utils-20240317-051606-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240317.img (UUID e1706a76-a641-4f6f-90fe-65f00771b7d2)... 644s Creating nova instance adt-noble-arm64-cwl-utils-20240317-051606-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240317.img (UUID e1706a76-a641-4f6f-90fe-65f00771b7d2)...