0s autopkgtest [09:58:47]: starting date and time: 2024-03-16 09:58:47+0000
0s autopkgtest [09:58:47]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
0s autopkgtest [09:58:47]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wg0xcvx8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:cfitsio,src:curl,src:gnutls28,src:libpsl,src:nettle --apt-upgrade cpl-plugin-giraf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cfitsio/4.3.1-1.1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-5.secgroup --name adt-noble-arm64-cpl-plugin-giraf-20240316-095846-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
103s autopkgtest [10:00:30]: testbed dpkg architecture: arm64
103s autopkgtest [10:00:30]: testbed apt version: 2.7.12
103s autopkgtest [10:00:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup
103s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
104s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
104s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB]
104s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
104s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [472 kB]
104s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [647 kB]
104s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
104s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
104s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
104s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3976 kB]
104s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
104s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.0 kB]
104s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
106s Fetched 9060 kB in 2s (5041 kB/s)
106s Reading package lists...
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s Calculating upgrade...
111s The following packages have been kept back:
111s curl
111s The following packages will be upgraded:
111s ubuntu-minimal ubuntu-standard
111s 2 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
111s Need to get 21.4 kB of archives.
111s After this operation, 0 B of additional disk space will be used.
111s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
111s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
112s Fetched 21.4 kB in 0s (97.0 kB/s)
112s (Reading database ...
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74758 files and directories currently installed.)
112s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ...
112s Unpacking ubuntu-minimal (1.536) over (1.535) ...
112s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ...
112s Unpacking ubuntu-standard (1.536) over (1.535) ...
112s Setting up ubuntu-minimal (1.536) ...
112s Setting up ubuntu-standard (1.536) ...
112s Reading package lists...
113s Building dependency tree...
113s Reading state information...
114s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
115s sh: Attempting to set up Debian/Ubuntu apt sources automatically
115s sh: Distribution appears to be Ubuntu
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
117s eatmydata is already the newest version (131-1).
117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
117s Reading package lists...
118s Building dependency tree...
118s Reading state information...
119s dbus is already the newest version (1.14.10-4ubuntu1).
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
120s rng-tools-debian is already the newest version (2.4).
120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
122s The following packages will be REMOVED:
122s cloud-init* python3-configobj* python3-debconf*
122s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
122s After this operation, 3252 kB disk space will be freed.
123s (Reading database ...
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74758 files and directories currently installed.)
123s Removing cloud-init (24.1.1-0ubuntu1) ...
123s Removing python3-configobj (5.0.8-3) ...
123s Removing python3-debconf (1.5.86) ...
123s Processing triggers for man-db (2.12.0-3) ...
124s (Reading database ...
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74369 files and directories currently installed.)
124s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
125s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
125s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
125s invoke-rc.d: policy-rc.d denied execution of try-restart.
125s Reading package lists...
125s Building dependency tree...
125s Reading state information...
126s linux-generic is already the newest version (6.8.0-11.11+1).
126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
126s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
126s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
126s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
128s Reading package lists...
128s Reading package lists...
129s Building dependency tree...
129s Reading state information...
129s Calculating upgrade...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s autopkgtest [10:00:58]: rebooting testbed after setup commands that affected boot
168s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
175s autopkgtest [10:01:42]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
178s autopkgtest [10:01:45]: @@@@@@@@@@@@@@@@@@@@ apt-source cpl-plugin-giraf
182s Get:1 http://ftpmaster.internal/ubuntu noble/universe cpl-plugin-giraf 2.16.10+dfsg-1build1 (dsc) [2599 B]
182s Get:2 http://ftpmaster.internal/ubuntu noble/universe cpl-plugin-giraf 2.16.10+dfsg-1build1 (tar) [751 kB]
182s Get:3 http://ftpmaster.internal/ubuntu noble/universe cpl-plugin-giraf 2.16.10+dfsg-1build1 (diff) [9912 B]
182s gpgv: Signature made Tue Jan 24 05:14:20 2023 UTC
182s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D
182s gpgv: issuer "steve.langasek@ubuntu.com"
182s gpgv: Can't check signature: No public key
182s dpkg-source: warning: cannot verify inline signature for ./cpl-plugin-giraf_2.16.10+dfsg-1build1.dsc: no acceptable signature found
182s autopkgtest [10:01:49]: testing package cpl-plugin-giraf version 2.16.10+dfsg-1build1
183s autopkgtest [10:01:50]: build not needed
183s autopkgtest [10:01:50]: test test-recipe.py: preparing testbed
185s Reading package lists...
185s Building dependency tree...
185s Reading state information...
185s Starting pkgProblemResolver with broken count: 0
185s Starting 2 pkgProblemResolver with broken count: 0
185s Done
186s The following additional packages will be installed:
186s cpl-plugin-giraf libblas3 libcext0 libcfitsio10 libcplcore26 libcpldfs26
186s libcpldrs26 libcplui26 liberfa1 libfftw3-double3 libfftw3-single3
186s libgfortran5 libgomp1 libjs-jquery libjs-jquery-hotkeys
186s libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter
186s libjs-jquery-throttle-debounce libjs-sphinxdoc libjs-underscore liblapack3
186s libpython3.11-minimal libpython3.11-stdlib libwcs8 python3-astropy
186s python3-astropy-iers-data python3-configobj python3-coverage python3-cpl
186s python3-dateutil python3-distutils python3-erfa python3-hypothesis
186s python3-iniconfig python3-lib2to3 python3-numpy python3-packaging
186s python3-pluggy python3-ply python3-pytest python3-pytest-arraydiff
186s python3-pytest-astropy python3-pytest-astropy-header python3-pytest-cov
186s python3-pytest-doctestplus python3-pytest-filter-subpackage
186s python3-pytest-mock python3-pytest-remotedata python3-sortedcontainers
186s python3.11 python3.11-minimal
186s Suggested packages:
186s cpl-plugin-giraf-calib cpl-plugin-giraf-doc libfftw3-bin libfftw3-dev
186s libxml2-utils python-astropy-doc python3-astropy-affiliated python3-bs4
186s python3-h5py python3-matplotlib python3-pandas python-configobj-doc
186s python-coverage-doc gdb python-hypothesis-doc gcc gfortran python3-dev
186s python-ply-doc python-pytest-mock-doc python-sortedcontainers-doc
186s python3.11-venv python3.11-doc binfmt-support
186s Recommended packages:
186s javascript-common libjs-jquery-datatables python3-scipy python3-click
186s The following NEW packages will be installed:
186s autopkgtest-satdep cpl-plugin-giraf libblas3 libcext0 libcfitsio10
186s libcplcore26 libcpldfs26 libcpldrs26 libcplui26 liberfa1 libfftw3-double3
186s libfftw3-single3 libgfortran5 libgomp1 libjs-jquery libjs-jquery-hotkeys
186s libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter
186s libjs-jquery-throttle-debounce libjs-sphinxdoc libjs-underscore liblapack3
186s libpython3.11-minimal libpython3.11-stdlib libwcs8 python3-astropy
186s python3-astropy-iers-data python3-configobj python3-coverage python3-cpl
186s python3-dateutil python3-distutils python3-erfa python3-hypothesis
186s python3-iniconfig python3-lib2to3 python3-numpy python3-packaging
186s python3-pluggy python3-ply python3-pytest python3-pytest-arraydiff
186s python3-pytest-astropy python3-pytest-astropy-header python3-pytest-cov
186s python3-pytest-doctestplus python3-pytest-filter-subpackage
186s python3-pytest-mock python3-pytest-remotedata python3-sortedcontainers
186s python3.11 python3.11-minimal
186s 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded.
186s Need to get 25.8 MB/25.8 MB of archives.
186s After this operation, 114 MB of additional disk space will be used.
186s Get:1 /tmp/autopkgtest.f2zx2j/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B]
186s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB]
187s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB]
187s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
187s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2ubuntu2 [11.5 kB]
187s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB]
187s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB]
187s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 libcext0 arm64 7.3.2+ds-1build1 [30.9 kB]
187s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libcfitsio10 arm64 4.3.1-1 [519 kB]
187s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
187s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB]
187s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-single3 arm64 3.3.10-1ubuntu1 [579 kB]
187s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libcplcore26 arm64 7.3.2+ds-1build1 [447 kB]
187s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libcplui26 arm64 7.3.2+ds-1build1 [36.4 kB]
187s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 libcpldfs26 arm64 7.3.2+ds-1build1 [39.2 kB]
187s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 libwcs8 arm64 8.2.2+ds-3 [301 kB]
187s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libcpldrs26 arm64 7.3.2+ds-1build1 [62.5 kB]
187s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 cpl-plugin-giraf arm64 2.16.10+dfsg-1build1 [372 kB]
187s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
187s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
187s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-metadata all 12-4 [6582 B]
187s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [193 kB]
187s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB]
187s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
187s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB]
187s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
187s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 python3-configobj all 5.0.8-3 [33.8 kB]
187s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB]
187s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB]
187s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
187s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB]
187s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB]
187s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB]
187s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB]
187s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 python3-sortedcontainers all 2.4.0-2 [27.6 kB]
187s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-hypothesis all 6.92.2-1 [371 kB]
187s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB]
187s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-arraydiff all 0.6.1-2 [10.2 kB]
187s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-astropy-header all 0.2.2-1 [8190 B]
187s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-coverage arm64 7.3.2-0ubuntu1 [147 kB]
187s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B]
187s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-cov all 4.1.0-1 [21.5 kB]
187s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-doctestplus all 1.2.0-1 [23.1 kB]
187s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-filter-subpackage all 0.2.0-1 [6094 B]
187s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-mock all 3.12.0-1.1 [11.3 kB]
187s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-remotedata all 0.4.1-1 [8650 B]
187s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-astropy all 0.11.0-1 [5902 B]
187s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 python3-ply all 3.11-6 [46.5 kB]
187s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-astropy-iers-data all 0.2024.01.01.00.33.39-1 [2046 kB]
187s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 liberfa1 arm64 2.0.1-1 [136 kB]
187s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-erfa arm64 2.0.1.1+ds-3 [311 kB]
187s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-astropy arm64 6.0.0-1 [5269 kB]
188s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cpl arm64 0.7.4-2build9 [37.4 kB]
188s Fetched 25.8 MB in 2s (16.1 MB/s)
188s Selecting previously unselected package libpython3.11-minimal:arm64.
189s (Reading database ...
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74314 files and directories currently installed.)
189s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ...
189s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ...
189s Selecting previously unselected package python3.11-minimal.
189s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ...
189s Unpacking python3.11-minimal (3.11.8-1) ...
189s Selecting previously unselected package libjs-jquery.
189s Preparing to unpack .../02-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
189s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
189s Selecting previously unselected package libjs-jquery-hotkeys.
189s Preparing to unpack .../03-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2ubuntu2_all.deb ...
189s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2ubuntu2) ...
189s Selecting previously unselected package libpython3.11-stdlib:arm64.
189s Preparing to unpack .../04-libpython3.11-stdlib_3.11.8-1_arm64.deb ...
189s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ...
189s Selecting previously unselected package python3.11.
189s Preparing to unpack .../05-python3.11_3.11.8-1_arm64.deb ...
189s Unpacking python3.11 (3.11.8-1) ...
189s Selecting previously unselected package libcext0:arm64.
189s Preparing to unpack .../06-libcext0_7.3.2+ds-1build1_arm64.deb ...
189s Unpacking libcext0:arm64 (7.3.2+ds-1build1) ...
189s Selecting previously unselected package libcfitsio10:arm64.
189s Preparing to unpack .../07-libcfitsio10_4.3.1-1_arm64.deb ...
189s Unpacking libcfitsio10:arm64 (4.3.1-1) ...
189s Selecting previously unselected package libgomp1:arm64.
189s Preparing to unpack .../08-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
189s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
189s Selecting previously unselected package libfftw3-double3:arm64.
189s Preparing to unpack .../09-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ...
189s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ...
189s Selecting previously unselected package libfftw3-single3:arm64.
189s Preparing to unpack .../10-libfftw3-single3_3.3.10-1ubuntu1_arm64.deb ...
189s Unpacking libfftw3-single3:arm64 (3.3.10-1ubuntu1) ...
189s Selecting previously unselected package libcplcore26:arm64.
189s Preparing to unpack .../11-libcplcore26_7.3.2+ds-1build1_arm64.deb ...
189s Unpacking libcplcore26:arm64 (7.3.2+ds-1build1) ...
189s Selecting previously unselected package libcplui26:arm64.
189s Preparing to unpack .../12-libcplui26_7.3.2+ds-1build1_arm64.deb ...
189s Unpacking libcplui26:arm64 (7.3.2+ds-1build1) ...
189s Selecting previously unselected package libcpldfs26:arm64.
189s Preparing to unpack .../13-libcpldfs26_7.3.2+ds-1build1_arm64.deb ...
189s Unpacking libcpldfs26:arm64 (7.3.2+ds-1build1) ...
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209s autopkgtest [10:02:16]: test test-recipe.py: [-----------------------
210s Recipe gimasterflat:
210s version 2.16.10
210s Parameters: {'fiber-splist': '', 'fiber-nspec': 0, 'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1, 'sloc-mode': 'all', 'sloc-start': -1, 'sloc-retries': 10, 'sloc-binsize': -1, 'sloc-ewidth': 1.0, 'sloc-ywidth': -1, 'sloc-center': 'centroid', 'sloc-norm': False, 'sloc-noise': 7.0, 'sloc-threshold': 'local', 'sloc-ron': -1.0, 'sloc-yorder': 4, 'sloc-worder': 2, 'sloc-sigma': 2.5, 'sloc-niter': 5, 'sloc-mfrac': 0.9, 'psf-model': 'psfexp2', 'psf-norm': False, 'psf-binsize': 64, 'psf-maxwidth': 16.0, 'psf-width': 0.0, 'psf-exponent': -3.0, 'psf-pfniter': 120, 'psf-pfntest': 7, 'psf-pfdchisq': 0.001, 'psf-prmfit': False, 'psf-yorder': 4, 'psf-worder': 4, 'psf-sigma': 3.5, 'psf-niter': 10, 'psf-mfrac': 0.8, 'extr-method': 'SUM', 'extr-ron': -1.0, 'extr-psfmodel': 'psfexp2', 'extr-psfsigma': 7.0, 'extr-psfniter': 2, 'extr-hewidth': 2, 'extr-hmingood': 3, 'extr-omfrac': 0.9, 'extr-owfactor': 3.0, 'extr-obkgorder': 2, 'transmission': True, 'slight': False, 'slight-model': 'polynom', 'slight-order': '4,2', 'slight-xstep': 10, 'slight-ystep': 1, 'slight-xslice': 'none', 'slight-ewidth': 0.5, 'slight-iswidth': 2, 'slight-istrim': True, 'slight-phff': False, 'slight-remove': False}
210s Docstring: Create the fiber master flat field and the localization mask.
210s
210s For detailed information please refer to the GIRAFFE pipeline user
210s manual. It is available at http://www.eso.org/pipelines.
210s
210s Parameters:
210s fiber-splist: Index list of spectra to use for localization (e.g.
210s 2,10,30-40,55). (str; default: '')
210s fiber-nspec: Number of spectra to localize. (int; default: 0)
210s remove-bias: Enable bias removal (bool; default: True)
210s bsremove-method: Bias removal method (str; default: 'PROFILE')
210s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
210s ,Xln:Xrn:Yln:Yrn) (str; default: '5:40:0:4095')
210s bsremove-sigma: Sigma Clipping: sigma threshold factor (float;
210s default: 2.5)
210s bsremove-niter: Sigma Clipping: maximum number of iterations (int;
210s default: 5)
210s bsremove-mfrac: Sigma Clipping: minimum fraction of points
210s accepted/total [0.0..1.0] (float; default: 0.8)
210s bsremove-xorder: Order of X polynomial fit (CURVE method only) (int;
210s default: 1)
210s bsremove-yorder: Order of Y polynomial fit (CURVE method only) (int;
210s default: 1)
210s bsremove-xstep: Sampling step along X (CURVE method only) (int;
210s default: 1)
210s bsremove-ystep: Sampling step along Y (CURVE method only) (int;
210s default: 1)
210s sloc-mode: Localization mode: Use all spectra or the 5 SIWC
210s spectra (str; default: 'all')
210s sloc-start: Bin along x-axis (int; default: -1)
210s sloc-retries: Initial localization detection xbin retries. (int;
210s default: 10)
210s sloc-binsize: Initial localization detection xbin size. (int;
210s default: -1)
210s sloc-ewidth: Localization detection extra width. (float; default:
210s 1.0)
210s sloc-ywidth: Full width [pxl] of the equilizing filter (distance
210s between two adjacent fibers). (int; default: -1)
210s sloc-center: Method used for mask center computation. (str;
210s default: 'centroid')
210s sloc-norm: Enable spectrum normalization along the dispersion
210s axis. (bool; default: False)
210s sloc-noise: Threshold multiplier. (float; default: 7.0)
210s sloc-threshold: Selects thresholding algorithm: local, row or global
210s (str; default: 'local')
210s sloc-ron: New bias sigma (RON) value for dark subtraction
210s (float; default: -1.0)
210s sloc-yorder: Order of Chebyshev polynomial fit. (int; default: 4)
210s sloc-worder: Order of Chebyshev 2D polynomial fit. (int; default:
210s 2)
210s sloc-sigma: Localization clipping: sigma threshold factor
210s (float; default: 2.5)
210s sloc-niter: Localization clipping: number of iterations (int;
210s default: 5)
210s sloc-mfrac: Localization clipping: minimum fraction of points
210s accepted/total. (float; default: 0.9)
210s psf-model: PSF profile model: `psfexp', `psfexp2' (str;
210s default: 'psfexp2')
210s psf-norm: Use normalized pixel values. (bool; default: False)
210s psf-binsize: Size of bin along dispersion axis (int; default: 64)
210s psf-maxwidth: Maximum width of the PSF profile. (float; default:
210s 16.0)
210s psf-width: Initial width of the PSF profile. (float; default:
210s 0.0)
210s psf-exponent: Exponent of the exponential PSF profile (will not be
210s fitted if > 0). (float; default: -3.0)
210s psf-pfniter: Maximum number of iterations used for the fit of the
210s fiber PSF profile. (int; default: 120)
210s psf-pfntest: Maximum number of tests used for the fit of the
210s fiber PSF profile (int; default: 7)
210s psf-pfdchisq: Minimum chi-square difference used for the fit of
210s the fiber PSF profile. (float; default: 0.001)
210s psf-prmfit: 2D fit of the PSF profile parameters using a
210s Chebyshev polynomial model. (bool; default: False)
210s psf-yorder: Order of Chebyshev polynomial fit. (int; default: 4)
210s psf-worder: Order of Chebyshev 2D polynomial fit. (int; default:
210s 4)
210s psf-sigma: PSF parameter fitting: sigma threshold factor
210s (float; default: 3.5)
210s psf-niter: PSF parameter fitting: number of iterations (int;
210s default: 10)
210s psf-mfrac: PSF parameter fitting: minimum fraction of points
210s accepted/total. (float; default: 0.8)
210s extr-method: Extraction method: 'SUM', 'HORNE' or 'OPTIMAL' (str;
210s default: 'SUM')
210s extr-ron: New bias sigma (RON) value for bias and dark
210s corrected image (float; default: -1.0)
210s extr-psfmodel: PSF profile model: `psfexp', `psfexp2' (str;
210s default: 'psfexp2')
210s extr-psfsigma: Sigma clippging threshold used for rejecting data
210s points during PSF fitting (Horne's sigma). It is
210s used to reject bad pixels and cosmics. (float;
210s default: 7.0)
210s extr-psfniter: Maximum number of iterations used for fitting the
210s PSF profile. (int; default: 2)
210s extr-hewidth: Horne extraction method: Number of extra pixels
210s added to the fiber half-width. (int; default: 2)
210s extr-hmingood: Horne extraction method: Minimum number of points
210s used for the profile fit. It sets the lower limit of
210s data points for the pixel rejection. (int; default:
210s 3)
210s extr-omfrac: Optimal extraction method: Minimum fraction of the
210s data points used for fitting the fiber profiles. It
210s sets the lower limit for the pixel rejection.
210s (float; default: 0.9)
210s extr-owfactor: Optimal extraction method: Factor by which the fiber
210s PSF half width is multiplied. Adjacent spectra
210s within this area are assumed to affect the spectrum
210s being extracted. (float; default: 3.0)
210s extr-obkgorder: Optimal extraction method: Order of the polynomial
210s background model, which is fitted for each
210s wavelength bin along the spatial direction. (int;
210s default: 2)
210s transmission: Controls the relative fiber transmission
210s computation. (bool; default: True)
210s slight: Controls the scattered light model computation.
210s (bool; default: False)
210s slight-model: Name of the scattered light model to use. (str;
210s default: 'polynom')
210s slight-order: Scattered light model fit X and Y order. (str;
210s default: '4,2')
210s slight-xstep: Interspectrum region sampling step along the
210s dispersion direction. (int; default: 10)
210s slight-ystep: Interspectrum region sampling step along the spatial
210s direction. (int; default: 1)
210s slight-xslice: Interspectrum region sampling step along the
210s dispersion direction for a specific region. This
210s overrides 'xstep' for the given region. (str;
210s default: 'none')
210s slight-ewidth: Extra width [pixels] added to both sides of a
210s spectrum trace. (float; default: 0.5)
210s slight-iswidth: Minimum width [pixels] required for interspectrum
210s regions. (int; default: 2)
210s slight-istrim: Turn off using the first and last interspectrum
210s region. (bool; default: True)
210s slight-phff: Use photometric flat field correction. (bool;
210s default: False)
210s slight-remove: Remove scattered light from the input frame. (bool;
210s default: False)
210s Author: Giraffe Pipeline
210s
210s
210s Recipe giscience:
210s version 2.16.10
210s Parameters: {'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1, 'extr-method': 'SUM', 'extr-ron': -1.0, 'extr-psfmodel': 'psfexp2', 'extr-psfsigma': 7.0, 'extr-psfniter': 2, 'extr-hewidth': 2, 'extr-hmingood': 3, 'extr-omfrac': 0.9, 'extr-owfactor': 3.0, 'extr-obkgorder': 2, 'flat-apply': True, 'transmission-apply': False, 'rbin-method': 'linear', 'rbin-xresid': True, 'rbin-lstep': 0.005, 'rbin-scmethod': 'linear', 'rbin-size': 0, 'rbin-range': 'setup', 'siwc-apply': True, 'scal-cniter': 1, 'scal-zmax': 10000.0, 'scal-cstep': -0.005, 'scal-cdomain': '0.,0.', 'scal-rvlimits': '-200.,200.', 'scal-rvniter': 3, 'scal-rvwfactor': 1.5, 'scal-pfniter': 50, 'scal-pfntest': 7, 'scal-pfdchisq': 0.0001, 'recon-min': 0.0, 'recon-max': 0.0, 'recon-cube': True, 'recon-format': 'single', 'generate-SDP-format': False, 'dummy-association-keys': 0}
210s Docstring: Process a science observation.
210s
210s For detailed information please refer to the GIRAFFE pipeline user
210s manual. It is available at http://www.eso.org/pipelines.
210s
210s Parameters:
210s remove-bias: Enable bias removal (bool; default: True)
210s bsremove-method: Bias removal method (str; default: 'PROFILE')
210s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
210s ,Xln:Xrn:Yln:Yrn) (str; default:
210s '5:40:0:4095')
210s bsremove-sigma: Sigma Clipping: sigma threshold factor
210s (float; default: 2.5)
210s bsremove-niter: Sigma Clipping: maximum number of iterations
210s (int; default: 5)
210s bsremove-mfrac: Sigma Clipping: minimum fraction of points
210s accepted/total [0.0..1.0] (float; default:
210s 0.8)
210s bsremove-xorder: Order of X polynomial fit (CURVE method only)
210s (int; default: 1)
210s bsremove-yorder: Order of Y polynomial fit (CURVE method only)
210s (int; default: 1)
210s bsremove-xstep: Sampling step along X (CURVE method only)
210s (int; default: 1)
210s bsremove-ystep: Sampling step along Y (CURVE method only)
210s (int; default: 1)
210s extr-method: Extraction method: 'SUM', 'HORNE' or
210s 'OPTIMAL' (str; default: 'SUM')
210s extr-ron: New bias sigma (RON) value for bias and dark
210s corrected image (float; default: -1.0)
210s extr-psfmodel: PSF profile model: `psfexp', `psfexp2' (str;
210s default: 'psfexp2')
210s extr-psfsigma: Sigma clippging threshold used for rejecting
210s data points during PSF fitting (Horne's
210s sigma). It is used to reject bad pixels and
210s cosmics. (float; default: 7.0)
210s extr-psfniter: Maximum number of iterations used for fitting
210s the PSF profile. (int; default: 2)
210s extr-hewidth: Horne extraction method: Number of extra
210s pixels added to the fiber half-width. (int;
210s default: 2)
210s extr-hmingood: Horne extraction method: Minimum number of
210s points used for the profile fit. It sets the
210s lower limit of data points for the pixel
210s rejection. (int; default: 3)
210s extr-omfrac: Optimal extraction method: Minimum fraction
210s of the data points used for fitting the fiber
210s profiles. It sets the lower limit for the
210s pixel rejection. (float; default: 0.9)
210s extr-owfactor: Optimal extraction method: Factor by which
210s the fiber PSF half width is multiplied.
210s Adjacent spectra within this area are assumed
210s to affect the spectrum being extracted.
210s (float; default: 3.0)
210s extr-obkgorder: Optimal extraction method: Order of the
210s polynomial background model, which is fitted
210s for each wavelength bin along the spatial
210s direction. (int; default: 2)
210s flat-apply: Controls the flat field correction. (bool;
210s default: True)
210s transmission-apply: Controls the fiber to fiber transmission
210s correction. (bool; default: False)
210s rbin-method: Method to use : `linear' or `spline' (str;
210s default: 'linear')
210s rbin-xresid: Use x residuals during rebinning?
210s `true'/`false' (bool; default: True)
210s rbin-lstep: Lambda step size, only used if scaling method
210s is 'linear' (float; default: 0.005)
210s rbin-scmethod: Scaling method: `log' or `linear' (str;
210s default: 'linear')
210s rbin-size: Size of output rebinned spectra, 0 means
210s calculate size based on wavelength range and
210s lambda stepsize (int; default: 0)
210s rbin-range: Rebinning range: `setup' or `common' (str;
210s default: 'setup')
210s siwc-apply: Enable simultaneous wavelength calibration
210s correction. (bool; default: True)
210s scal-cniter: Slit geometry calibration maximum number of
210s iterations. (int; default: 1)
210s scal-zmax: Maximum allowed pixel value. To be effective
210s it must be larger than 0. (float; default:
210s 10000.0)
210s scal-cstep: Cross-correlation step. (float; default:
210s -0.005)
210s scal-cdomain: Restricts the cross-correlation to the given
210s domain. (str; default: '0.,0.')
210s scal-rvlimits: Delta RV limits of the cross-correlation
210s window in km/s. (str; default: '-200.,200.')
210s scal-rvniter: Maximum number of iterations used for the RV
210s determination. (int; default: 3)
210s scal-rvwfactor: Data window width factor. The FWHM times this
210s value determines the window width. (float;
210s default: 1.5)
210s scal-pfniter: Peak model fit maximum number of iterations.
210s (int; default: 50)
210s scal-pfntest: Cross-correlation peak fit maximum number of
210s tests (int; default: 7)
210s scal-pfdchisq: Cross-correlation peak fit minimum chi-square
210s difference. (float; default: 0.0001)
210s recon-min: Minimum wavelength for image reconstruction
210s (float; default: 0.0)
210s recon-max: Maximum wavelength for image reconstruction
210s (float; default: 0.0)
210s recon-cube: Turns data cube creation on and off (bool;
210s default: True)
210s recon-format: Selects the file format for cubes (str;
210s default: 'single')
210s generate-SDP-format: TRUE if additional files should be generated
210s in Science Data Product (SDP) format. (bool;
210s default: False)
210s dummy-association-keys: Sets the number of dummy (empty) ASSONi,
210s ASSOCi and ASSOMi keywords to create. (int;
210s default: 0)
210s Author: Giraffe Pipeline
210s
210s
210s Recipe giwavecalibration:
210s version 2.16.10
210s Parameters: {'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1, 'extr-method': 'SUM', 'extr-ron': -1.0, 'extr-psfmodel': 'psfexp2', 'extr-psfsigma': 7.0, 'extr-psfniter': 2, 'extr-hewidth': 2, 'extr-hmingood': 3, 'extr-omfrac': 0.9, 'extr-owfactor': 3.0, 'extr-obkgorder': 2, 'wcal-lswidth': '10,10,10,10,10', 'wcal-lssep': 0.9, 'wcal-lsfxratio': 50.0, 'wcal-lsbright': 0.0, 'wcal-lscount': -80, 'wcal-lswrange': '0.,0.', 'wcal-lfmodel': 'psfexp', 'wcal-lfres': 'auto', 'wcal-lfthreshold': 1.0, 'wcal-lfoffset': 10.0, 'wcal-lfniter': 50, 'wcal-lfntest': 7, 'wcal-lfdchisq': 0.0001, 'wcal-lfreswid': 0.5, 'wcal-lfexpwid': -3.0, 'wcal-soffset': 'setup', 'wcal-ommodel': 'xoptmod2', 'wcal-omdir': 1, 'wcal-omsol': True, 'wcal-omflags': 'sdx,sdy,sphi', 'wcal-omsslits': False, 'wcal-omniter': 50, 'wcal-omntest': 7, 'wcal-omdchisq': 0.0001, 'wcal-xwsigma': 1.25, 'wcal-xwniter': 10, 'wcal-xwmfrac': 0.9, 'wcal-xworder': '2,2', 'wcal-wssigma': 150.0, 'wcal-wsniter': 10, 'wcal-wsmfrac': 0.9, 'wcal-wsorder': '6,4', 'wcal-rebin': True, 'rbin-method': 'linear', 'rbin-xresid': True, 'rbin-lstep': 0.005, 'rbin-scmethod': 'linear', 'rbin-size': 0, 'rbin-range': 'setup', 'wcal-slit': False, 'scal-cniter': 1, 'scal-zmax': 10000.0, 'scal-cstep': -0.005, 'scal-cdomain': '0.,0.', 'scal-rvlimits': '-200.,200.', 'scal-rvniter': 3, 'scal-rvwfactor': 1.5, 'scal-pfniter': 50, 'scal-pfntest': 7, 'scal-pfdchisq': 0.0001}
210s Docstring: Compute dispersion solution from an arc-lamp spectrum.
210s
210s For detailed information please refer to the GIRAFFE pipeline user
210s manual. It is available at http://www.eso.org/pipelines.
210s
210s Parameters:
210s remove-bias: Enable bias removal (bool; default: True)
210s bsremove-method: Bias removal method (str; default: 'PROFILE')
210s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
210s ,Xln:Xrn:Yln:Yrn) (str; default: '5:40:0:4095')
210s bsremove-sigma: Sigma Clipping: sigma threshold factor (float;
210s default: 2.5)
210s bsremove-niter: Sigma Clipping: maximum number of iterations (int;
210s default: 5)
210s bsremove-mfrac: Sigma Clipping: minimum fraction of points
210s accepted/total [0.0..1.0] (float; default: 0.8)
210s bsremove-xorder: Order of X polynomial fit (CURVE method only) (int;
210s default: 1)
210s bsremove-yorder: Order of Y polynomial fit (CURVE method only) (int;
210s default: 1)
210s bsremove-xstep: Sampling step along X (CURVE method only) (int;
210s default: 1)
210s bsremove-ystep: Sampling step along Y (CURVE method only) (int;
210s default: 1)
210s extr-method: Extraction method: 'SUM', 'HORNE' or 'OPTIMAL'
210s (str; default: 'SUM')
210s extr-ron: New bias sigma (RON) value for bias and dark
210s corrected image (float; default: -1.0)
210s extr-psfmodel: PSF profile model: `psfexp', `psfexp2' (str;
210s default: 'psfexp2')
210s extr-psfsigma: Sigma clippging threshold used for rejecting data
210s points during PSF fitting (Horne's sigma). It is
210s used to reject bad pixels and cosmics. (float;
210s default: 7.0)
210s extr-psfniter: Maximum number of iterations used for fitting the
210s PSF profile. (int; default: 2)
210s extr-hewidth: Horne extraction method: Number of extra pixels
210s added to the fiber half-width. (int; default: 2)
210s extr-hmingood: Horne extraction method: Minimum number of points
210s used for the profile fit. It sets the lower limit
210s of data points for the pixel rejection. (int;
210s default: 3)
210s extr-omfrac: Optimal extraction method: Minimum fraction of the
210s data points used for fitting the fiber profiles. It
210s sets the lower limit for the pixel rejection.
210s (float; default: 0.9)
210s extr-owfactor: Optimal extraction method: Factor by which the
210s fiber PSF half width is multiplied. Adjacent
210s spectra within this area are assumed to affect the
210s spectrum being extracted. (float; default: 3.0)
210s extr-obkgorder: Optimal extraction method: Order of the polynomial
210s background model, which is fitted for each
210s wavelength bin along the spatial direction. (int;
210s default: 2)
210s wcal-lswidth: List of window widths [pxl] used for line detection
210s and fit (e.g. '60,40,15'). (str; default:
210s '10,10,10,10,10')
210s wcal-lssep: Factor used to compute the minimum line separation
210s from the window width. (float; default: 0.9)
210s wcal-lsfxratio: Selects only lines whose neighbours have a relative
210s intensity less than 1. / fluxratio. (float;
210s default: 50.0)
210s wcal-lsbright: Selects lines having an intensity greater or equal
210s to the given intensity. (float; default: 0.0)
210s wcal-lscount: Sets the minimum number of lines to select;
210s selected are lines with the highest nominal
210s intensity. A value of 0 turns this selection off.
210s If the value is less than 0 the selection is
210s skipped if the line list does not contain enough
210s lines. (int; default: -80)
210s wcal-lswrange: Selects only lines within the given wavelength
210s range [nm]. (str; default: '0.,0.')
210s wcal-lfmodel: Line profile model. (str; default: 'psfexp')
210s wcal-lfres: Use optical model residuals for line detection.
210s (str; default: 'auto')
210s wcal-lfthreshold: Line detection threshold during the line fitting
210s (multiple of bias sigma) (float; default: 1.0)
210s wcal-lfoffset: Maximum allowed difference between the fitted and
210s raw line peak position. (float; default: 10.0)
210s wcal-lfniter: Line detection fit maximum number of iterations.
210s (int; default: 50)
210s wcal-lfntest: Line detection fit maximum number of tests. (int;
210s default: 7)
210s wcal-lfdchisq: Line detection fit minimum chi-square difference.
210s (float; default: 0.0001)
210s wcal-lfreswid: Line width/resolution width factor. (float;
210s default: 0.5)
210s wcal-lfexpwid: Exponential line profile exponent; it will not be
210s fitted if it is larger than 0. (float; default:
210s -3.0)
210s wcal-soffset: Initial slit position offsets along the x and y
210s direction and rotation angle. (str; default:
210s 'setup')
210s wcal-ommodel: Optical model. (str; default: 'xoptmod2')
210s wcal-omdir: Dispersion direction flag. (int; default: 1)
210s wcal-omsol: Controls optical model parameter fitting. (bool;
210s default: True)
210s wcal-omflags: List of flags defining the set of free parameters
210s used for fitting the optical model. Possible values
210s are: fcoll, gcam, theta, sdx, sdy, sphi (str;
210s default: 'sdx,sdy,sphi')
210s wcal-omsslits: Controls subslit geometry usage in the optical
210s model fit; subslits are used if set to `true'.
210s (bool; default: False)
210s wcal-omniter: Optical model fit maximum number of iterations.
210s (int; default: 50)
210s wcal-omntest: Optical model fit maximum number of tests (int;
210s default: 7)
210s wcal-omdchisq: Optical model fit minimum chi-square difference.
210s (float; default: 0.0001)
210s wcal-xwsigma: PSF width fit sigma clipping factor. (float;
210s default: 1.25)
210s wcal-xwniter: PSF width fit sigma clipping maximum number of
210s iterations. (int; default: 10)
210s wcal-xwmfrac: PSF width fit sigma clipping minimum fraction of
210s points accepted/total. (float; default: 0.9)
210s wcal-xworder: X and Y polynomial orders for PSF x-width Chebyshev
210s fit. (str; default: '2,2')
210s wcal-wssigma: Chebyshev correction sigma clipping factor. (float;
210s default: 150.0)
210s wcal-wsniter: Chebyshev correction sigma clipping maximum number
210s of iterations (int; default: 10)
210s wcal-wsmfrac: Chebyshev correction sigma clipping minimum
210s fraction of points accepted/total. (float; default:
210s 0.9)
210s wcal-wsorder: X and Y polynomial orders for the wavelength
210s solution Chebyshev correction. (str; default:
210s '6,4')
210s wcal-rebin: Rebin extracted arc-lamp spectra. (bool; default:
210s True)
210s rbin-method: Method to use : `linear' or `spline' (str; default:
210s 'linear')
210s rbin-xresid: Use x residuals during rebinning? `true'/`false'
210s (bool; default: True)
210s rbin-lstep: Lambda step size, only used if scaling method is
210s 'linear' (float; default: 0.005)
210s rbin-scmethod: Scaling method: `log' or `linear' (str; default:
210s 'linear')
210s rbin-size: Size of output rebinned spectra, 0 means calculate
210s size based on wavelength range and lambda stepsize
210s (int; default: 0)
210s rbin-range: Rebinning range: `setup' or `common' (str; default:
210s 'setup')
210s wcal-slit: Controls the slit geometry calibration. (bool;
210s default: False)
210s scal-cniter: Slit geometry calibration maximum number of
210s iterations. (int; default: 1)
210s scal-zmax: Maximum allowed pixel value. To be effective it
210s must be larger than 0. (float; default: 10000.0)
210s scal-cstep: Cross-correlation step. (float; default: -0.005)
210s scal-cdomain: Restricts the cross-correlation to the given
210s domain. (str; default: '0.,0.')
210s scal-rvlimits: Delta RV limits of the cross-correlation window in
210s km/s. (str; default: '-200.,200.')
210s scal-rvniter: Maximum number of iterations used for the RV
210s determination. (int; default: 3)
210s scal-rvwfactor: Data window width factor. The FWHM times this value
210s determines the window width. (float; default: 1.5)
210s scal-pfniter: Peak model fit maximum number of iterations. (int;
210s default: 50)
210s scal-pfntest: Cross-correlation peak fit maximum number of tests
210s (int; default: 7)
210s scal-pfdchisq: Cross-correlation peak fit minimum chi-square
210s difference. (float; default: 0.0001)
210s Author: Giraffe Pipeline
210s
210s
210s Recipe gimasterdark:
210s version 2.16.10
210s Parameters: {'stack-method': 'median', 'stack-ksigmalow': 5.0, 'stack-ksigmahigh': 5.0, 'stack-minreject': 1, 'stack-maxreject': 1, 'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1}
210s Docstring: Creates a master dark image from a set of raw dark frames.
210s
210s For detailed information please refer to the GIRAFFE pipeline user
210s manual. It is available at http://www.eso.org/pipelines.
210s
210s Parameters:
210s stack-method: Stacking method: average, median, minmax or ksigma
210s (str; default: 'median')
210s stack-ksigmalow: Lower threshold multiplier for method ksigma
210s (float; default: 5.0)
210s stack-ksigmahigh: Upper threshold multiplier for method ksigma
210s (float; default: 5.0)
210s stack-minreject: Minimum rejection level for method minmax (int;
210s default: 1)
210s stack-maxreject: Maximum rejection level for method minmax (int;
210s default: 1)
210s remove-bias: Enable bias removal (bool; default: True)
210s bsremove-method: Bias removal method (str; default: 'PROFILE')
210s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
210s ,Xln:Xrn:Yln:Yrn) (str; default: '5:40:0:4095')
210s bsremove-sigma: Sigma Clipping: sigma threshold factor (float;
210s default: 2.5)
210s bsremove-niter: Sigma Clipping: maximum number of iterations (int;
210s default: 5)
210s bsremove-mfrac: Sigma Clipping: minimum fraction of points
210s accepted/total [0.0..1.0] (float; default: 0.8)
210s bsremove-xorder: Order of X polynomial fit (CURVE method only) (int;
210s default: 1)
210s bsremove-yorder: Order of Y polynomial fit (CURVE method only) (int;
210s default: 1)
210s bsremove-xstep: Sampling step along X (CURVE method only) (int;
210s default: 1)
210s bsremove-ystep: Sampling step along Y (CURVE method only) (int;
210s default: 1)
210s Author: Giraffe Pipeline
210s
210s
210s Recipe gistandard:
210s version 2.16.10
210s Parameters: {'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1, 'extr-method': 'SUM', 'extr-ron': -1.0, 'extr-psfmodel': 'psfexp2', 'extr-psfsigma': 7.0, 'extr-psfniter': 2, 'extr-hewidth': 2, 'extr-hmingood': 3, 'extr-omfrac': 0.9, 'extr-owfactor': 3.0, 'extr-obkgorder': 2, 'flat-apply': False, 'transmission-apply': False, 'rbin-method': 'linear', 'rbin-xresid': True, 'rbin-lstep': 0.005, 'rbin-scmethod': 'linear', 'rbin-size': 0, 'rbin-range': 'common', 'recon-min': 0.0, 'recon-max': 0.0, 'recon-cube': True, 'recon-format': 'single', 'flx-skycorr': False, 'max-dist': 60.0}
210s Docstring: Process a spectro-photometric standard star observation and compute
210s the instrument response curve.
210s
210s For detailed information please refer to the GIRAFFE pipeline user
210s manual. It is available at http://www.eso.org/pipelines.
210s
210s Parameters:
210s remove-bias: Enable bias removal (bool; default: True)
210s bsremove-method: Bias removal method (str; default: 'PROFILE')
210s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
210s ,Xln:Xrn:Yln:Yrn) (str; default: '5:40:0:4095')
210s bsremove-sigma: Sigma Clipping: sigma threshold factor (float;
210s default: 2.5)
210s bsremove-niter: Sigma Clipping: maximum number of iterations
210s (int; default: 5)
210s bsremove-mfrac: Sigma Clipping: minimum fraction of points
210s accepted/total [0.0..1.0] (float; default: 0.8)
210s bsremove-xorder: Order of X polynomial fit (CURVE method only)
210s (int; default: 1)
210s bsremove-yorder: Order of Y polynomial fit (CURVE method only)
210s (int; default: 1)
210s bsremove-xstep: Sampling step along X (CURVE method only) (int;
210s default: 1)
210s bsremove-ystep: Sampling step along Y (CURVE method only) (int;
210s default: 1)
210s extr-method: Extraction method: 'SUM', 'HORNE' or 'OPTIMAL'
210s (str; default: 'SUM')
210s extr-ron: New bias sigma (RON) value for bias and dark
210s corrected image (float; default: -1.0)
210s extr-psfmodel: PSF profile model: `psfexp', `psfexp2' (str;
210s default: 'psfexp2')
210s extr-psfsigma: Sigma clippging threshold used for rejecting data
210s points during PSF fitting (Horne's sigma). It is
210s used to reject bad pixels and cosmics. (float;
210s default: 7.0)
210s extr-psfniter: Maximum number of iterations used for fitting the
210s PSF profile. (int; default: 2)
210s extr-hewidth: Horne extraction method: Number of extra pixels
210s added to the fiber half-width. (int; default: 2)
210s extr-hmingood: Horne extraction method: Minimum number of points
210s used for the profile fit. It sets the lower limit
210s of data points for the pixel rejection. (int;
210s default: 3)
210s extr-omfrac: Optimal extraction method: Minimum fraction of
210s the data points used for fitting the fiber
210s profiles. It sets the lower limit for the pixel
210s rejection. (float; default: 0.9)
210s extr-owfactor: Optimal extraction method: Factor by which the
210s fiber PSF half width is multiplied. Adjacent
210s spectra within this area are assumed to affect
210s the spectrum being extracted. (float; default:
210s 3.0)
210s extr-obkgorder: Optimal extraction method: Order of the
210s polynomial background model, which is fitted for
210s each wavelength bin along the spatial direction.
210s (int; default: 2)
210s flat-apply: Controls the flat field correction. (bool;
210s default: False)
210s transmission-apply: Controls the fiber to fiber transmission
210s correction. (bool; default: False)
210s rbin-method: Method to use : `linear' or `spline' (str;
210s default: 'linear')
210s rbin-xresid: Use x residuals during rebinning? `true'/`false'
210s (bool; default: True)
210s rbin-lstep: Lambda step size, only used if scaling method is
210s 'linear' (float; default: 0.005)
210s rbin-scmethod: Scaling method: `log' or `linear' (str; default:
210s 'linear')
210s rbin-size: Size of output rebinned spectra, 0 means
210s calculate size based on wavelength range and
210s lambda stepsize (int; default: 0)
210s rbin-range: Rebinning range: `setup' or `common' (str;
210s default: 'common')
210s recon-min: Minimum wavelength for image reconstruction
210s (float; default: 0.0)
210s recon-max: Maximum wavelength for image reconstruction
210s (float; default: 0.0)
210s recon-cube: Turns data cube creation on and off (bool;
210s default: True)
210s recon-format: Selects the file format for cubes (str; default:
210s 'single')
210s flx-skycorr: Correct spectra for the sky emission (bool;
210s default: False)
210s max-dist: Standar star search radius (float; default:
210s 60.0)
210s Author: Giraffe Pipeline
210s
210s
210s Recipe giframestack:
210s version 2.16.10
210s Parameters: {'stack-method': 'average', 'stack-ksigmalow': 5.0, 'stack-ksigmahigh': 5.0, 'stack-minreject': 1, 'stack-maxreject': 1}
211s Docstring: Creates a stacked image from a set of raw images.
211s
211s TBD
211s
211s Parameters:
211s stack-method: Stacking method: average, median, minmax or ksigma
211s (str; default: 'average')
211s stack-ksigmalow: Lower threshold multiplier for method ksigma
211s (float; default: 5.0)
211s stack-ksigmahigh: Upper threshold multiplier for method ksigma
211s (float; default: 5.0)
211s stack-minreject: Minimum rejection level for method minmax (int;
211s default: 1)
211s stack-maxreject: Maximum rejection level for method minmax (int;
211s default: 1)
211s Author: Giraffe Pipeline
211s
211s
211s Recipe gimasterbias:
211s version 2.16.10
211s Parameters: {'stack-method': 'average', 'stack-ksigmalow': 5.0, 'stack-ksigmahigh': 5.0, 'stack-minreject': 1, 'stack-maxreject': 1, 'mbias-oscremove': False, 'mbias-bpxclean': False, 'bpm-create': True, 'bpm-factor': 5.0, 'bpm-frac': 0.15}
211s Docstring: Creates a master bias image from a set of raw biases.
211s
211s For detailed information please refer to the GIRAFFE pipeline user
211s manual. It is available at http://www.eso.org/pipelines.
211s
211s Parameters:
211s stack-method: Stacking method: average, median, minmax or ksigma
211s (str; default: 'average')
211s stack-ksigmalow: Lower threshold multiplier for method ksigma
211s (float; default: 5.0)
211s stack-ksigmahigh: Upper threshold multiplier for method ksigma
211s (float; default: 5.0)
211s stack-minreject: Minimum rejection level for method minmax (int;
211s default: 1)
211s stack-maxreject: Maximum rejection level for method minmax (int;
211s default: 1)
211s mbias-oscremove: Remove pre- and over-scan regions from the created
211s master bias image. (bool; default: False)
211s mbias-bpxclean: Correct master bias image for bad pixels (bool;
211s default: False)
211s bpm-create: Create bad pixel map using a simple thresholding
211s algorithm. (temporary!) (bool; default: True)
211s bpm-factor: Readout noise multiplier defining the valid range
211s of pixel values for searching bad pixels. (float;
211s default: 5.0)
211s bpm-frac: Maximum fraction of pixels which may be flagged as
211s 'bad. If more pixels are found to be 'bad a warning
211s is issued. (float; default: 0.15)
211s Author: Giraffe Pipeline
211s
211s
211s autopkgtest [10:02:18]: test test-recipe.py: -----------------------]
212s test-recipe.py PASS
212s autopkgtest [10:02:19]: test test-recipe.py: - - - - - - - - - - results - - - - - - - - - -
212s autopkgtest [10:02:19]: @@@@@@@@@@@@@@@@@@@@ summary
212s test-recipe.py PASS
223s Creating nova instance adt-noble-arm64-cpl-plugin-giraf-20240316-095846-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...