0s autopkgtest [21:29:11]: starting date: 2024-03-07
0s autopkgtest [21:29:11]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline
0s autopkgtest [21:29:11]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dzi9yzj6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:wget,src:libpsl,src:openssl --apt-upgrade cpl-plugin-giraf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=wget/1.21.4-1ubuntu2 libpsl/0.21.2-1.1 openssl/3.0.10-1ubuntu5' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-10.secgroup --name adt-noble-arm64-cpl-plugin-giraf-20240307-212910-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
86s autopkgtest [21:30:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
87s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
87s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [1813 kB]
87s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [3976 B]
87s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [321 kB]
87s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [23.8 kB]
87s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [443 kB]
87s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
87s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB]
87s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
87s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [2170 kB]
87s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
87s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [21.5 kB]
87s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
89s Fetched 4945 kB in 1s (3990 kB/s)
89s Reading package lists...
91s Reading package lists...
91s Building dependency tree...
91s Reading state information...
92s Calculating upgrade...
92s The following packages will be REMOVED:
92s libpsl5 libssl3
92s The following NEW packages will be installed:
92s libpsl5t64 libssl3t64
92s The following packages will be upgraded:
92s libproc2-0 openssl pci.ids procps wget
92s 5 upgraded, 2 newly installed, 2 to remove and 0 not upgraded.
92s Need to get 4172 kB of archives.
92s After this operation, 94.2 kB of additional disk space will be used.
92s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 wget arm64 1.21.4-1ubuntu2 [330 kB]
93s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
93s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.10-1ubuntu5 [982 kB]
93s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.10-1ubuntu5 [1763 kB]
93s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-4ubuntu1 [58.4 kB]
93s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-4ubuntu1 [708 kB]
93s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 pci.ids all 0.0~2024.02.02-1 [273 kB]
93s Fetched 4172 kB in 1s (6006 kB/s)
94s (Reading database ...
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(Reading database ... 80%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74662 files and directories currently installed.)
94s Preparing to unpack .../wget_1.21.4-1ubuntu2_arm64.deb ...
94s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ...
94s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
94s libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
94s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
94s
94s (Reading database ...
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74662 files and directories currently installed.)
94s Removing libpsl5:arm64 (0.21.2-1build1) ...
94s Selecting previously unselected package libpsl5t64:arm64.
94s (Reading database ...
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74657 files and directories currently installed.)
94s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
94s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
94s Preparing to unpack .../openssl_3.0.10-1ubuntu5_arm64.deb ...
94s Unpacking openssl (3.0.10-1ubuntu5) over (3.0.10-1ubuntu4) ...
94s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
94s u-boot-tools depends on libssl3 (>= 3.0.0).
94s tnftp depends on libssl3 (>= 3.0.0).
94s tcpdump depends on libssl3 (>= 3.0.0).
94s systemd-resolved depends on libssl3 (>= 3.0.0).
94s systemd depends on libssl3 (>= 3.0.0).
94s sudo depends on libssl3 (>= 3.0.0).
94s sbsigntool depends on libssl3 (>= 3.0.0).
94s rsync depends on libssl3 (>= 3.0.0).
94s python3-cryptography depends on libssl3 (>= 3.0.0).
94s openssh-server depends on libssl3 (>= 3.0.10).
94s openssh-client depends on libssl3 (>= 3.0.10).
94s mtd-utils depends on libssl3 (>= 3.0.0).
94s mokutil depends on libssl3 (>= 3.0.0).
94s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
94s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
94s libssh-4:arm64 depends on libssl3 (>= 3.0.0).
94s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
94s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
94s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
94s libnvme1 depends on libssl3 (>= 3.0.0).
94s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
94s libkmod2:arm64 depends on libssl3 (>= 3.0.0).
94s libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
94s libcurl4:arm64 depends on libssl3 (>= 3.0.0).
94s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
94s kmod depends on libssl3 (>= 3.0.0).
94s dhcpcd-base depends on libssl3 (>= 3.0.0).
94s bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
94s
94s (Reading database ...
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74663 files and directories currently installed.)
94s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
94s Selecting previously unselected package libssl3t64:arm64.
94s (Reading database ...
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74652 files and directories currently installed.)
94s Preparing to unpack .../libssl3t64_3.0.10-1ubuntu5_arm64.deb ...
94s Unpacking libssl3t64:arm64 (3.0.10-1ubuntu5) ...
95s Preparing to unpack .../libproc2-0_2%3a4.0.4-4ubuntu1_arm64.deb ...
95s Unpacking libproc2-0:arm64 (2:4.0.4-4ubuntu1) over (2:4.0.4-2ubuntu1) ...
95s Preparing to unpack .../procps_2%3a4.0.4-4ubuntu1_arm64.deb ...
95s Unpacking procps (2:4.0.4-4ubuntu1) over (2:4.0.4-2ubuntu1) ...
95s Preparing to unpack .../pci.ids_0.0~2024.02.02-1_all.deb ...
95s Unpacking pci.ids (0.0~2024.02.02-1) over (0.0~2023.11.11-1) ...
95s Setting up pci.ids (0.0~2024.02.02-1) ...
95s Setting up libssl3t64:arm64 (3.0.10-1ubuntu5) ...
95s Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
95s Setting up libproc2-0:arm64 (2:4.0.4-4ubuntu1) ...
95s Setting up procps (2:4.0.4-4ubuntu1) ...
95s Setting up openssl (3.0.10-1ubuntu5) ...
95s Setting up wget (1.21.4-1ubuntu2) ...
95s Processing triggers for man-db (2.12.0-3) ...
97s Processing triggers for install-info (7.1-3) ...
97s Processing triggers for libc-bin (2.39-0ubuntu2) ...
97s Reading package lists...
97s Building dependency tree...
97s Reading state information...
98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
99s sh: Attempting to set up Debian/Ubuntu apt sources automatically
99s sh: Distribution appears to be Ubuntu
99s Reading package lists...
100s Building dependency tree...
100s Reading state information...
100s eatmydata is already the newest version (131-1).
100s dbus is already the newest version (1.14.10-4ubuntu1).
100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
100s Reading package lists...
100s Building dependency tree...
100s Reading state information...
101s rng-tools-debian is already the newest version (2.4).
101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
101s Reading package lists...
101s Building dependency tree...
101s Reading state information...
102s haveged is already the newest version (1.9.14-1ubuntu1).
102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
102s Reading package lists...
102s Building dependency tree...
102s Reading state information...
103s The following packages will be REMOVED:
103s cloud-init* python3-configobj* python3-debconf*
103s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
103s After this operation, 3248 kB disk space will be freed.
103s (Reading database ...
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74665 files and directories currently installed.)
103s Removing cloud-init (24.1-0ubuntu1) ...
104s Removing python3-configobj (5.0.8-3) ...
104s Removing python3-debconf (1.5.86) ...
104s Processing triggers for man-db (2.12.0-3) ...
105s (Reading database ...
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(Reading database ... 50%
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74276 files and directories currently installed.)
105s Purging configuration files for cloud-init (24.1-0ubuntu1) ...
105s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
105s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s linux-generic is already the newest version (6.8.0-11.11+1).
106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
107s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
107s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
107s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
107s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
108s Reading package lists...
108s Reading package lists...
109s Building dependency tree...
109s Reading state information...
109s Calculating upgrade...
109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s autopkgtest [21:31:02]: rebooting testbed after setup commands that affected boot
137s autopkgtest [21:31:28]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
137s autopkgtest [21:31:28]: testbed dpkg architecture: arm64
138s autopkgtest [21:31:29]: @@@@@@@@@@@@@@@@@@@@ apt-source cpl-plugin-giraf
141s Get:1 http://ftpmaster.internal/ubuntu noble/universe cpl-plugin-giraf 2.16.10+dfsg-1build1 (dsc) [2599 B]
141s Get:2 http://ftpmaster.internal/ubuntu noble/universe cpl-plugin-giraf 2.16.10+dfsg-1build1 (tar) [751 kB]
141s Get:3 http://ftpmaster.internal/ubuntu noble/universe cpl-plugin-giraf 2.16.10+dfsg-1build1 (diff) [9912 B]
141s gpgv: Signature made Tue Jan 24 05:14:20 2023 UTC
141s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D
141s gpgv: issuer "steve.langasek@ubuntu.com"
141s gpgv: Can't check signature: No public key
141s dpkg-source: warning: cannot verify inline signature for ./cpl-plugin-giraf_2.16.10+dfsg-1build1.dsc: no acceptable signature found
142s autopkgtest [21:31:33]: testing package cpl-plugin-giraf version 2.16.10+dfsg-1build1
142s autopkgtest [21:31:33]: build not needed
143s autopkgtest [21:31:34]: test test-recipe.py: preparing testbed
146s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s Correcting dependencies...Starting pkgProblemResolver with broken count: 0
146s Starting 2 pkgProblemResolver with broken count: 0
146s Done
146s Done
146s Starting pkgProblemResolver with broken count: 0
146s Starting 2 pkgProblemResolver with broken count: 0
146s Done
147s The following additional packages will be installed:
147s cpl-plugin-giraf libblas3 libcext0 libcfitsio10 libcplcore26 libcpldfs26
147s libcpldrs26 libcplui26 liberfa1 libfftw3-double3 libfftw3-single3
147s libgfortran5 libgomp1 libjs-jquery libjs-jquery-hotkeys
147s libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter
147s libjs-jquery-throttle-debounce libjs-sphinxdoc libjs-underscore liblapack3
147s libpython3.11-minimal libpython3.11-stdlib libwcs8 python3-astropy
147s python3-astropy-iers-data python3-configobj python3-coverage python3-cpl
147s python3-dateutil python3-distutils python3-erfa python3-hypothesis
147s python3-iniconfig python3-lib2to3 python3-numpy python3-packaging
147s python3-pluggy python3-ply python3-pytest python3-pytest-arraydiff
147s python3-pytest-astropy python3-pytest-astropy-header python3-pytest-cov
147s python3-pytest-doctestplus python3-pytest-filter-subpackage
147s python3-pytest-mock python3-pytest-remotedata python3-sortedcontainers
147s python3.11 python3.11-minimal
147s Suggested packages:
147s cpl-plugin-giraf-calib cpl-plugin-giraf-doc libfftw3-bin libfftw3-dev
147s libxml2-utils python-astropy-doc python3-astropy-affiliated python3-bs4
147s python3-h5py python3-matplotlib python3-pandas python-configobj-doc
147s python-coverage-doc gdb python-hypothesis-doc gcc gfortran python3-dev
147s python-ply-doc python-pytest-mock-doc python-sortedcontainers-doc
147s python3.11-venv python3.11-doc binfmt-support
147s Recommended packages:
147s javascript-common libjs-jquery-datatables python3-scipy python3-click
147s The following NEW packages will be installed:
147s cpl-plugin-giraf libblas3 libcext0 libcfitsio10 libcplcore26 libcpldfs26
147s libcpldrs26 libcplui26 liberfa1 libfftw3-double3 libfftw3-single3
147s libgfortran5 libgomp1 libjs-jquery libjs-jquery-hotkeys
147s libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter
147s libjs-jquery-throttle-debounce libjs-sphinxdoc libjs-underscore liblapack3
147s libpython3.11-minimal libpython3.11-stdlib libwcs8 python3-astropy
147s python3-astropy-iers-data python3-configobj python3-coverage python3-cpl
147s python3-dateutil python3-distutils python3-erfa python3-hypothesis
147s python3-iniconfig python3-lib2to3 python3-numpy python3-packaging
147s python3-pluggy python3-ply python3-pytest python3-pytest-arraydiff
147s python3-pytest-astropy python3-pytest-astropy-header python3-pytest-cov
147s python3-pytest-doctestplus python3-pytest-filter-subpackage
147s python3-pytest-mock python3-pytest-remotedata python3-sortedcontainers
147s python3.11 python3.11-minimal
147s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded.
147s 1 not fully installed or removed.
147s Need to get 25.8 MB of archives.
147s After this operation, 114 MB of additional disk space will be used.
147s Get:1 http://ftpmaster.internal/ubuntu noble/universe arm64 libcext0 arm64 7.3.2+ds-1build1 [30.9 kB]
147s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 libcfitsio10 arm64 4.3.1-1 [519 kB]
148s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
148s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB]
148s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-single3 arm64 3.3.10-1ubuntu1 [579 kB]
148s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libcplcore26 arm64 7.3.2+ds-1build1 [447 kB]
148s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libcplui26 arm64 7.3.2+ds-1build1 [36.4 kB]
148s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 libcpldfs26 arm64 7.3.2+ds-1build1 [39.2 kB]
148s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libwcs8 arm64 8.2.2+ds-3 [301 kB]
148s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libcpldrs26 arm64 7.3.2+ds-1build1 [62.5 kB]
148s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 cpl-plugin-giraf arm64 2.16.10+dfsg-1build1 [372 kB]
148s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 python3-configobj all 5.0.8-3 [33.8 kB]
148s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB]
148s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB]
148s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
148s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB]
148s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB]
148s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB]
148s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB]
148s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 python3-sortedcontainers all 2.4.0-2 [27.6 kB]
148s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-hypothesis all 6.92.2-1 [371 kB]
148s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB]
148s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB]
148s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB]
148s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB]
148s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
148s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
148s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
148s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB]
148s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-arraydiff all 0.6.1-2 [10.2 kB]
148s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-astropy-header all 0.2.2-1 [8190 B]
148s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-coverage arm64 7.3.2-0ubuntu1 [147 kB]
148s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
148s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2ubuntu2 [11.5 kB]
148s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B]
148s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-metadata all 12-4 [6582 B]
148s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [193 kB]
148s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB]
148s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-cov all 4.1.0-1 [21.5 kB]
148s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-doctestplus all 1.2.0-1 [23.1 kB]
148s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-filter-subpackage all 0.2.0-1 [6094 B]
148s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-mock all 3.12.0-1.1 [11.3 kB]
148s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-remotedata all 0.4.1-1 [8650 B]
148s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest-astropy all 0.11.0-1 [5902 B]
148s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 python3-ply all 3.11-6 [46.5 kB]
148s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-astropy-iers-data all 0.2024.01.01.00.33.39-1 [2046 kB]
148s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 liberfa1 arm64 2.0.1-1 [136 kB]
148s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
148s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-sphinxdoc all 7.2.6-4 [149 kB]
148s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-erfa arm64 2.0.1.1+ds-3 [311 kB]
148s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-astropy arm64 6.0.0-1 [5269 kB]
149s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cpl arm64 0.7.4-2build9 [37.4 kB]
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168s autopkgtest [21:31:59]: test test-recipe.py: [-----------------------
169s Recipe gimasterflat:
169s version 2.16.10
169s Parameters: {'fiber-splist': '', 'fiber-nspec': 0, 'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1, 'sloc-mode': 'all', 'sloc-start': -1, 'sloc-retries': 10, 'sloc-binsize': -1, 'sloc-ewidth': 1.0, 'sloc-ywidth': -1, 'sloc-center': 'centroid', 'sloc-norm': False, 'sloc-noise': 7.0, 'sloc-threshold': 'local', 'sloc-ron': -1.0, 'sloc-yorder': 4, 'sloc-worder': 2, 'sloc-sigma': 2.5, 'sloc-niter': 5, 'sloc-mfrac': 0.9, 'psf-model': 'psfexp2', 'psf-norm': False, 'psf-binsize': 64, 'psf-maxwidth': 16.0, 'psf-width': 0.0, 'psf-exponent': -3.0, 'psf-pfniter': 120, 'psf-pfntest': 7, 'psf-pfdchisq': 0.001, 'psf-prmfit': False, 'psf-yorder': 4, 'psf-worder': 4, 'psf-sigma': 3.5, 'psf-niter': 10, 'psf-mfrac': 0.8, 'extr-method': 'SUM', 'extr-ron': -1.0, 'extr-psfmodel': 'psfexp2', 'extr-psfsigma': 7.0, 'extr-psfniter': 2, 'extr-hewidth': 2, 'extr-hmingood': 3, 'extr-omfrac': 0.9, 'extr-owfactor': 3.0, 'extr-obkgorder': 2, 'transmission': True, 'slight': False, 'slight-model': 'polynom', 'slight-order': '4,2', 'slight-xstep': 10, 'slight-ystep': 1, 'slight-xslice': 'none', 'slight-ewidth': 0.5, 'slight-iswidth': 2, 'slight-istrim': True, 'slight-phff': False, 'slight-remove': False}
169s Docstring: Create the fiber master flat field and the localization mask.
169s
169s For detailed information please refer to the GIRAFFE pipeline user
169s manual. It is available at http://www.eso.org/pipelines.
169s
169s Parameters:
169s fiber-splist: Index list of spectra to use for localization (e.g.
169s 2,10,30-40,55). (str; default: '')
169s fiber-nspec: Number of spectra to localize. (int; default: 0)
169s remove-bias: Enable bias removal (bool; default: True)
169s bsremove-method: Bias removal method (str; default: 'PROFILE')
169s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
169s ,Xln:Xrn:Yln:Yrn) (str; default: '5:40:0:4095')
169s bsremove-sigma: Sigma Clipping: sigma threshold factor (float;
169s default: 2.5)
169s bsremove-niter: Sigma Clipping: maximum number of iterations (int;
169s default: 5)
169s bsremove-mfrac: Sigma Clipping: minimum fraction of points
169s accepted/total [0.0..1.0] (float; default: 0.8)
169s bsremove-xorder: Order of X polynomial fit (CURVE method only) (int;
169s default: 1)
169s bsremove-yorder: Order of Y polynomial fit (CURVE method only) (int;
169s default: 1)
169s bsremove-xstep: Sampling step along X (CURVE method only) (int;
169s default: 1)
169s bsremove-ystep: Sampling step along Y (CURVE method only) (int;
169s default: 1)
169s sloc-mode: Localization mode: Use all spectra or the 5 SIWC
169s spectra (str; default: 'all')
169s sloc-start: Bin along x-axis (int; default: -1)
169s sloc-retries: Initial localization detection xbin retries. (int;
169s default: 10)
169s sloc-binsize: Initial localization detection xbin size. (int;
169s default: -1)
169s sloc-ewidth: Localization detection extra width. (float; default:
169s 1.0)
169s sloc-ywidth: Full width [pxl] of the equilizing filter (distance
169s between two adjacent fibers). (int; default: -1)
169s sloc-center: Method used for mask center computation. (str;
169s default: 'centroid')
169s sloc-norm: Enable spectrum normalization along the dispersion
169s axis. (bool; default: False)
169s sloc-noise: Threshold multiplier. (float; default: 7.0)
169s sloc-threshold: Selects thresholding algorithm: local, row or global
169s (str; default: 'local')
169s sloc-ron: New bias sigma (RON) value for dark subtraction
169s (float; default: -1.0)
169s sloc-yorder: Order of Chebyshev polynomial fit. (int; default: 4)
169s sloc-worder: Order of Chebyshev 2D polynomial fit. (int; default:
169s 2)
169s sloc-sigma: Localization clipping: sigma threshold factor
169s (float; default: 2.5)
169s sloc-niter: Localization clipping: number of iterations (int;
169s default: 5)
169s sloc-mfrac: Localization clipping: minimum fraction of points
169s accepted/total. (float; default: 0.9)
169s psf-model: PSF profile model: `psfexp', `psfexp2' (str;
169s default: 'psfexp2')
169s psf-norm: Use normalized pixel values. (bool; default: False)
169s psf-binsize: Size of bin along dispersion axis (int; default: 64)
169s psf-maxwidth: Maximum width of the PSF profile. (float; default:
169s 16.0)
169s psf-width: Initial width of the PSF profile. (float; default:
169s 0.0)
169s psf-exponent: Exponent of the exponential PSF profile (will not be
169s fitted if > 0). (float; default: -3.0)
169s psf-pfniter: Maximum number of iterations used for the fit of the
169s fiber PSF profile. (int; default: 120)
169s psf-pfntest: Maximum number of tests used for the fit of the
169s fiber PSF profile (int; default: 7)
169s psf-pfdchisq: Minimum chi-square difference used for the fit of
169s the fiber PSF profile. (float; default: 0.001)
169s psf-prmfit: 2D fit of the PSF profile parameters using a
169s Chebyshev polynomial model. (bool; default: False)
169s psf-yorder: Order of Chebyshev polynomial fit. (int; default: 4)
169s psf-worder: Order of Chebyshev 2D polynomial fit. (int; default:
169s 4)
169s psf-sigma: PSF parameter fitting: sigma threshold factor
169s (float; default: 3.5)
169s psf-niter: PSF parameter fitting: number of iterations (int;
169s default: 10)
169s psf-mfrac: PSF parameter fitting: minimum fraction of points
169s accepted/total. (float; default: 0.8)
169s extr-method: Extraction method: 'SUM', 'HORNE' or 'OPTIMAL' (str;
169s default: 'SUM')
169s extr-ron: New bias sigma (RON) value for bias and dark
169s corrected image (float; default: -1.0)
169s extr-psfmodel: PSF profile model: `psfexp', `psfexp2' (str;
169s default: 'psfexp2')
169s extr-psfsigma: Sigma clippging threshold used for rejecting data
169s points during PSF fitting (Horne's sigma). It is
169s used to reject bad pixels and cosmics. (float;
169s default: 7.0)
169s extr-psfniter: Maximum number of iterations used for fitting the
169s PSF profile. (int; default: 2)
169s extr-hewidth: Horne extraction method: Number of extra pixels
169s added to the fiber half-width. (int; default: 2)
169s extr-hmingood: Horne extraction method: Minimum number of points
169s used for the profile fit. It sets the lower limit of
169s data points for the pixel rejection. (int; default:
169s 3)
169s extr-omfrac: Optimal extraction method: Minimum fraction of the
169s data points used for fitting the fiber profiles. It
169s sets the lower limit for the pixel rejection.
169s (float; default: 0.9)
169s extr-owfactor: Optimal extraction method: Factor by which the fiber
169s PSF half width is multiplied. Adjacent spectra
169s within this area are assumed to affect the spectrum
169s being extracted. (float; default: 3.0)
169s extr-obkgorder: Optimal extraction method: Order of the polynomial
169s background model, which is fitted for each
169s wavelength bin along the spatial direction. (int;
169s default: 2)
169s transmission: Controls the relative fiber transmission
169s computation. (bool; default: True)
169s slight: Controls the scattered light model computation.
169s (bool; default: False)
169s slight-model: Name of the scattered light model to use. (str;
169s default: 'polynom')
169s slight-order: Scattered light model fit X and Y order. (str;
169s default: '4,2')
169s slight-xstep: Interspectrum region sampling step along the
169s dispersion direction. (int; default: 10)
169s slight-ystep: Interspectrum region sampling step along the spatial
169s direction. (int; default: 1)
169s slight-xslice: Interspectrum region sampling step along the
169s dispersion direction for a specific region. This
169s overrides 'xstep' for the given region. (str;
169s default: 'none')
169s slight-ewidth: Extra width [pixels] added to both sides of a
169s spectrum trace. (float; default: 0.5)
169s slight-iswidth: Minimum width [pixels] required for interspectrum
169s regions. (int; default: 2)
169s slight-istrim: Turn off using the first and last interspectrum
169s region. (bool; default: True)
169s slight-phff: Use photometric flat field correction. (bool;
169s default: False)
169s slight-remove: Remove scattered light from the input frame. (bool;
169s default: False)
169s Author: Giraffe Pipeline
169s
169s
169s Recipe giscience:
169s version 2.16.10
169s Parameters: {'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1, 'extr-method': 'SUM', 'extr-ron': -1.0, 'extr-psfmodel': 'psfexp2', 'extr-psfsigma': 7.0, 'extr-psfniter': 2, 'extr-hewidth': 2, 'extr-hmingood': 3, 'extr-omfrac': 0.9, 'extr-owfactor': 3.0, 'extr-obkgorder': 2, 'flat-apply': True, 'transmission-apply': False, 'rbin-method': 'linear', 'rbin-xresid': True, 'rbin-lstep': 0.005, 'rbin-scmethod': 'linear', 'rbin-size': 0, 'rbin-range': 'setup', 'siwc-apply': True, 'scal-cniter': 1, 'scal-zmax': 10000.0, 'scal-cstep': -0.005, 'scal-cdomain': '0.,0.', 'scal-rvlimits': '-200.,200.', 'scal-rvniter': 3, 'scal-rvwfactor': 1.5, 'scal-pfniter': 50, 'scal-pfntest': 7, 'scal-pfdchisq': 0.0001, 'recon-min': 0.0, 'recon-max': 0.0, 'recon-cube': True, 'recon-format': 'single', 'generate-SDP-format': False, 'dummy-association-keys': 0}
169s Docstring: Process a science observation.
169s
169s For detailed information please refer to the GIRAFFE pipeline user
169s manual. It is available at http://www.eso.org/pipelines.
169s
169s Parameters:
169s remove-bias: Enable bias removal (bool; default: True)
169s bsremove-method: Bias removal method (str; default: 'PROFILE')
169s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
169s ,Xln:Xrn:Yln:Yrn) (str; default:
169s '5:40:0:4095')
169s bsremove-sigma: Sigma Clipping: sigma threshold factor
169s (float; default: 2.5)
169s bsremove-niter: Sigma Clipping: maximum number of iterations
169s (int; default: 5)
169s bsremove-mfrac: Sigma Clipping: minimum fraction of points
169s accepted/total [0.0..1.0] (float; default:
169s 0.8)
169s bsremove-xorder: Order of X polynomial fit (CURVE method only)
169s (int; default: 1)
169s bsremove-yorder: Order of Y polynomial fit (CURVE method only)
169s (int; default: 1)
169s bsremove-xstep: Sampling step along X (CURVE method only)
169s (int; default: 1)
169s bsremove-ystep: Sampling step along Y (CURVE method only)
169s (int; default: 1)
169s extr-method: Extraction method: 'SUM', 'HORNE' or
169s 'OPTIMAL' (str; default: 'SUM')
169s extr-ron: New bias sigma (RON) value for bias and dark
169s corrected image (float; default: -1.0)
169s extr-psfmodel: PSF profile model: `psfexp', `psfexp2' (str;
169s default: 'psfexp2')
169s extr-psfsigma: Sigma clippging threshold used for rejecting
169s data points during PSF fitting (Horne's
169s sigma). It is used to reject bad pixels and
169s cosmics. (float; default: 7.0)
169s extr-psfniter: Maximum number of iterations used for fitting
169s the PSF profile. (int; default: 2)
169s extr-hewidth: Horne extraction method: Number of extra
169s pixels added to the fiber half-width. (int;
169s default: 2)
169s extr-hmingood: Horne extraction method: Minimum number of
169s points used for the profile fit. It sets the
169s lower limit of data points for the pixel
169s rejection. (int; default: 3)
169s extr-omfrac: Optimal extraction method: Minimum fraction
169s of the data points used for fitting the fiber
169s profiles. It sets the lower limit for the
169s pixel rejection. (float; default: 0.9)
169s extr-owfactor: Optimal extraction method: Factor by which
169s the fiber PSF half width is multiplied.
169s Adjacent spectra within this area are assumed
169s to affect the spectrum being extracted.
169s (float; default: 3.0)
169s extr-obkgorder: Optimal extraction method: Order of the
169s polynomial background model, which is fitted
169s for each wavelength bin along the spatial
169s direction. (int; default: 2)
169s flat-apply: Controls the flat field correction. (bool;
169s default: True)
169s transmission-apply: Controls the fiber to fiber transmission
169s correction. (bool; default: False)
169s rbin-method: Method to use : `linear' or `spline' (str;
169s default: 'linear')
169s rbin-xresid: Use x residuals during rebinning?
169s `true'/`false' (bool; default: True)
169s rbin-lstep: Lambda step size, only used if scaling method
169s is 'linear' (float; default: 0.005)
169s rbin-scmethod: Scaling method: `log' or `linear' (str;
169s default: 'linear')
169s rbin-size: Size of output rebinned spectra, 0 means
169s calculate size based on wavelength range and
169s lambda stepsize (int; default: 0)
169s rbin-range: Rebinning range: `setup' or `common' (str;
169s default: 'setup')
169s siwc-apply: Enable simultaneous wavelength calibration
169s correction. (bool; default: True)
169s scal-cniter: Slit geometry calibration maximum number of
169s iterations. (int; default: 1)
169s scal-zmax: Maximum allowed pixel value. To be effective
169s it must be larger than 0. (float; default:
169s 10000.0)
169s scal-cstep: Cross-correlation step. (float; default:
169s -0.005)
169s scal-cdomain: Restricts the cross-correlation to the given
169s domain. (str; default: '0.,0.')
169s scal-rvlimits: Delta RV limits of the cross-correlation
169s window in km/s. (str; default: '-200.,200.')
169s scal-rvniter: Maximum number of iterations used for the RV
169s determination. (int; default: 3)
169s scal-rvwfactor: Data window width factor. The FWHM times this
169s value determines the window width. (float;
169s default: 1.5)
169s scal-pfniter: Peak model fit maximum number of iterations.
169s (int; default: 50)
169s scal-pfntest: Cross-correlation peak fit maximum number of
169s tests (int; default: 7)
169s scal-pfdchisq: Cross-correlation peak fit minimum chi-square
169s difference. (float; default: 0.0001)
169s recon-min: Minimum wavelength for image reconstruction
169s (float; default: 0.0)
169s recon-max: Maximum wavelength for image reconstruction
169s (float; default: 0.0)
169s recon-cube: Turns data cube creation on and off (bool;
169s default: True)
169s recon-format: Selects the file format for cubes (str;
169s default: 'single')
169s generate-SDP-format: TRUE if additional files should be generated
169s in Science Data Product (SDP) format. (bool;
169s default: False)
169s dummy-association-keys: Sets the number of dummy (empty) ASSONi,
169s ASSOCi and ASSOMi keywords to create. (int;
169s default: 0)
169s Author: Giraffe Pipeline
169s
169s
169s Recipe giwavecalibration:
169s version 2.16.10
169s Parameters: {'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1, 'extr-method': 'SUM', 'extr-ron': -1.0, 'extr-psfmodel': 'psfexp2', 'extr-psfsigma': 7.0, 'extr-psfniter': 2, 'extr-hewidth': 2, 'extr-hmingood': 3, 'extr-omfrac': 0.9, 'extr-owfactor': 3.0, 'extr-obkgorder': 2, 'wcal-lswidth': '10,10,10,10,10', 'wcal-lssep': 0.9, 'wcal-lsfxratio': 50.0, 'wcal-lsbright': 0.0, 'wcal-lscount': -80, 'wcal-lswrange': '0.,0.', 'wcal-lfmodel': 'psfexp', 'wcal-lfres': 'auto', 'wcal-lfthreshold': 1.0, 'wcal-lfoffset': 10.0, 'wcal-lfniter': 50, 'wcal-lfntest': 7, 'wcal-lfdchisq': 0.0001, 'wcal-lfreswid': 0.5, 'wcal-lfexpwid': -3.0, 'wcal-soffset': 'setup', 'wcal-ommodel': 'xoptmod2', 'wcal-omdir': 1, 'wcal-omsol': True, 'wcal-omflags': 'sdx,sdy,sphi', 'wcal-omsslits': False, 'wcal-omniter': 50, 'wcal-omntest': 7, 'wcal-omdchisq': 0.0001, 'wcal-xwsigma': 1.25, 'wcal-xwniter': 10, 'wcal-xwmfrac': 0.9, 'wcal-xworder': '2,2', 'wcal-wssigma': 150.0, 'wcal-wsniter': 10, 'wcal-wsmfrac': 0.9, 'wcal-wsorder': '6,4', 'wcal-rebin': True, 'rbin-method': 'linear', 'rbin-xresid': True, 'rbin-lstep': 0.005, 'rbin-scmethod': 'linear', 'rbin-size': 0, 'rbin-range': 'setup', 'wcal-slit': False, 'scal-cniter': 1, 'scal-zmax': 10000.0, 'scal-cstep': -0.005, 'scal-cdomain': '0.,0.', 'scal-rvlimits': '-200.,200.', 'scal-rvniter': 3, 'scal-rvwfactor': 1.5, 'scal-pfniter': 50, 'scal-pfntest': 7, 'scal-pfdchisq': 0.0001}
169s Docstring: Compute dispersion solution from an arc-lamp spectrum.
169s
169s For detailed information please refer to the GIRAFFE pipeline user
169s manual. It is available at http://www.eso.org/pipelines.
169s
169s Parameters:
169s remove-bias: Enable bias removal (bool; default: True)
169s bsremove-method: Bias removal method (str; default: 'PROFILE')
169s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
169s ,Xln:Xrn:Yln:Yrn) (str; default: '5:40:0:4095')
169s bsremove-sigma: Sigma Clipping: sigma threshold factor (float;
169s default: 2.5)
169s bsremove-niter: Sigma Clipping: maximum number of iterations (int;
169s default: 5)
169s bsremove-mfrac: Sigma Clipping: minimum fraction of points
169s accepted/total [0.0..1.0] (float; default: 0.8)
169s bsremove-xorder: Order of X polynomial fit (CURVE method only) (int;
169s default: 1)
169s bsremove-yorder: Order of Y polynomial fit (CURVE method only) (int;
169s default: 1)
169s bsremove-xstep: Sampling step along X (CURVE method only) (int;
169s default: 1)
169s bsremove-ystep: Sampling step along Y (CURVE method only) (int;
169s default: 1)
169s extr-method: Extraction method: 'SUM', 'HORNE' or 'OPTIMAL'
169s (str; default: 'SUM')
169s extr-ron: New bias sigma (RON) value for bias and dark
169s corrected image (float; default: -1.0)
169s extr-psfmodel: PSF profile model: `psfexp', `psfexp2' (str;
169s default: 'psfexp2')
169s extr-psfsigma: Sigma clippging threshold used for rejecting data
169s points during PSF fitting (Horne's sigma). It is
169s used to reject bad pixels and cosmics. (float;
169s default: 7.0)
169s extr-psfniter: Maximum number of iterations used for fitting the
169s PSF profile. (int; default: 2)
169s extr-hewidth: Horne extraction method: Number of extra pixels
169s added to the fiber half-width. (int; default: 2)
169s extr-hmingood: Horne extraction method: Minimum number of points
169s used for the profile fit. It sets the lower limit
169s of data points for the pixel rejection. (int;
169s default: 3)
169s extr-omfrac: Optimal extraction method: Minimum fraction of the
169s data points used for fitting the fiber profiles. It
169s sets the lower limit for the pixel rejection.
169s (float; default: 0.9)
169s extr-owfactor: Optimal extraction method: Factor by which the
169s fiber PSF half width is multiplied. Adjacent
169s spectra within this area are assumed to affect the
169s spectrum being extracted. (float; default: 3.0)
169s extr-obkgorder: Optimal extraction method: Order of the polynomial
169s background model, which is fitted for each
169s wavelength bin along the spatial direction. (int;
169s default: 2)
169s wcal-lswidth: List of window widths [pxl] used for line detection
169s and fit (e.g. '60,40,15'). (str; default:
169s '10,10,10,10,10')
169s wcal-lssep: Factor used to compute the minimum line separation
169s from the window width. (float; default: 0.9)
169s wcal-lsfxratio: Selects only lines whose neighbours have a relative
169s intensity less than 1. / fluxratio. (float;
169s default: 50.0)
169s wcal-lsbright: Selects lines having an intensity greater or equal
169s to the given intensity. (float; default: 0.0)
169s wcal-lscount: Sets the minimum number of lines to select;
169s selected are lines with the highest nominal
169s intensity. A value of 0 turns this selection off.
169s If the value is less than 0 the selection is
169s skipped if the line list does not contain enough
169s lines. (int; default: -80)
169s wcal-lswrange: Selects only lines within the given wavelength
169s range [nm]. (str; default: '0.,0.')
169s wcal-lfmodel: Line profile model. (str; default: 'psfexp')
169s wcal-lfres: Use optical model residuals for line detection.
169s (str; default: 'auto')
169s wcal-lfthreshold: Line detection threshold during the line fitting
169s (multiple of bias sigma) (float; default: 1.0)
169s wcal-lfoffset: Maximum allowed difference between the fitted and
169s raw line peak position. (float; default: 10.0)
169s wcal-lfniter: Line detection fit maximum number of iterations.
169s (int; default: 50)
169s wcal-lfntest: Line detection fit maximum number of tests. (int;
169s default: 7)
169s wcal-lfdchisq: Line detection fit minimum chi-square difference.
169s (float; default: 0.0001)
169s wcal-lfreswid: Line width/resolution width factor. (float;
169s default: 0.5)
169s wcal-lfexpwid: Exponential line profile exponent; it will not be
169s fitted if it is larger than 0. (float; default:
169s -3.0)
169s wcal-soffset: Initial slit position offsets along the x and y
169s direction and rotation angle. (str; default:
169s 'setup')
169s wcal-ommodel: Optical model. (str; default: 'xoptmod2')
169s wcal-omdir: Dispersion direction flag. (int; default: 1)
169s wcal-omsol: Controls optical model parameter fitting. (bool;
169s default: True)
169s wcal-omflags: List of flags defining the set of free parameters
169s used for fitting the optical model. Possible values
169s are: fcoll, gcam, theta, sdx, sdy, sphi (str;
169s default: 'sdx,sdy,sphi')
169s wcal-omsslits: Controls subslit geometry usage in the optical
169s model fit; subslits are used if set to `true'.
169s (bool; default: False)
169s wcal-omniter: Optical model fit maximum number of iterations.
169s (int; default: 50)
169s wcal-omntest: Optical model fit maximum number of tests (int;
169s default: 7)
169s wcal-omdchisq: Optical model fit minimum chi-square difference.
169s (float; default: 0.0001)
169s wcal-xwsigma: PSF width fit sigma clipping factor. (float;
169s default: 1.25)
169s wcal-xwniter: PSF width fit sigma clipping maximum number of
169s iterations. (int; default: 10)
169s wcal-xwmfrac: PSF width fit sigma clipping minimum fraction of
169s points accepted/total. (float; default: 0.9)
169s wcal-xworder: X and Y polynomial orders for PSF x-width Chebyshev
169s fit. (str; default: '2,2')
169s wcal-wssigma: Chebyshev correction sigma clipping factor. (float;
169s default: 150.0)
169s wcal-wsniter: Chebyshev correction sigma clipping maximum number
169s of iterations (int; default: 10)
169s wcal-wsmfrac: Chebyshev correction sigma clipping minimum
169s fraction of points accepted/total. (float; default:
169s 0.9)
169s wcal-wsorder: X and Y polynomial orders for the wavelength
169s solution Chebyshev correction. (str; default:
169s '6,4')
169s wcal-rebin: Rebin extracted arc-lamp spectra. (bool; default:
169s True)
169s rbin-method: Method to use : `linear' or `spline' (str; default:
169s 'linear')
169s rbin-xresid: Use x residuals during rebinning? `true'/`false'
169s (bool; default: True)
169s rbin-lstep: Lambda step size, only used if scaling method is
169s 'linear' (float; default: 0.005)
169s rbin-scmethod: Scaling method: `log' or `linear' (str; default:
169s 'linear')
169s rbin-size: Size of output rebinned spectra, 0 means calculate
169s size based on wavelength range and lambda stepsize
169s (int; default: 0)
169s rbin-range: Rebinning range: `setup' or `common' (str; default:
169s 'setup')
169s wcal-slit: Controls the slit geometry calibration. (bool;
169s default: False)
169s scal-cniter: Slit geometry calibration maximum number of
169s iterations. (int; default: 1)
169s scal-zmax: Maximum allowed pixel value. To be effective it
169s must be larger than 0. (float; default: 10000.0)
169s scal-cstep: Cross-correlation step. (float; default: -0.005)
169s scal-cdomain: Restricts the cross-correlation to the given
169s domain. (str; default: '0.,0.')
169s scal-rvlimits: Delta RV limits of the cross-correlation window in
169s km/s. (str; default: '-200.,200.')
169s scal-rvniter: Maximum number of iterations used for the RV
169s determination. (int; default: 3)
169s scal-rvwfactor: Data window width factor. The FWHM times this value
169s determines the window width. (float; default: 1.5)
169s scal-pfniter: Peak model fit maximum number of iterations. (int;
169s default: 50)
169s scal-pfntest: Cross-correlation peak fit maximum number of tests
169s (int; default: 7)
169s scal-pfdchisq: Cross-correlation peak fit minimum chi-square
169s difference. (float; default: 0.0001)
169s Author: Giraffe Pipeline
169s
169s
169s Recipe gimasterdark:
169s version 2.16.10
169s Parameters: {'stack-method': 'median', 'stack-ksigmalow': 5.0, 'stack-ksigmahigh': 5.0, 'stack-minreject': 1, 'stack-maxreject': 1, 'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1}
169s Docstring: Creates a master dark image from a set of raw dark frames.
169s
169s For detailed information please refer to the GIRAFFE pipeline user
169s manual. It is available at http://www.eso.org/pipelines.
169s
169s Parameters:
169s stack-method: Stacking method: average, median, minmax or ksigma
169s (str; default: 'median')
169s stack-ksigmalow: Lower threshold multiplier for method ksigma
169s (float; default: 5.0)
169s stack-ksigmahigh: Upper threshold multiplier for method ksigma
169s (float; default: 5.0)
169s stack-minreject: Minimum rejection level for method minmax (int;
169s default: 1)
169s stack-maxreject: Maximum rejection level for method minmax (int;
169s default: 1)
169s remove-bias: Enable bias removal (bool; default: True)
169s bsremove-method: Bias removal method (str; default: 'PROFILE')
169s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
169s ,Xln:Xrn:Yln:Yrn) (str; default: '5:40:0:4095')
169s bsremove-sigma: Sigma Clipping: sigma threshold factor (float;
169s default: 2.5)
169s bsremove-niter: Sigma Clipping: maximum number of iterations (int;
169s default: 5)
169s bsremove-mfrac: Sigma Clipping: minimum fraction of points
169s accepted/total [0.0..1.0] (float; default: 0.8)
169s bsremove-xorder: Order of X polynomial fit (CURVE method only) (int;
169s default: 1)
169s bsremove-yorder: Order of Y polynomial fit (CURVE method only) (int;
169s default: 1)
169s bsremove-xstep: Sampling step along X (CURVE method only) (int;
169s default: 1)
169s bsremove-ystep: Sampling step along Y (CURVE method only) (int;
169s default: 1)
169s Author: Giraffe Pipeline
169s
169s
169s Recipe gistandard:
169s version 2.16.10
169s Parameters: {'remove-bias': True, 'bsremove-method': 'PROFILE', 'bsremove-areas': '5:40:0:4095', 'bsremove-sigma': 2.5, 'bsremove-niter': 5, 'bsremove-mfrac': 0.8, 'bsremove-xorder': 1, 'bsremove-yorder': 1, 'bsremove-xstep': 1, 'bsremove-ystep': 1, 'extr-method': 'SUM', 'extr-ron': -1.0, 'extr-psfmodel': 'psfexp2', 'extr-psfsigma': 7.0, 'extr-psfniter': 2, 'extr-hewidth': 2, 'extr-hmingood': 3, 'extr-omfrac': 0.9, 'extr-owfactor': 3.0, 'extr-obkgorder': 2, 'flat-apply': False, 'transmission-apply': False, 'rbin-method': 'linear', 'rbin-xresid': True, 'rbin-lstep': 0.005, 'rbin-scmethod': 'linear', 'rbin-size': 0, 'rbin-range': 'common', 'recon-min': 0.0, 'recon-max': 0.0, 'recon-cube': True, 'recon-format': 'single', 'flx-skycorr': False, 'max-dist': 60.0}
169s Docstring: Process a spectro-photometric standard star observation and compute
169s the instrument response curve.
169s
169s For detailed information please refer to the GIRAFFE pipeline user
169s manual. It is available at http://www.eso.org/pipelines.
169s
169s Parameters:
169s remove-bias: Enable bias removal (bool; default: True)
169s bsremove-method: Bias removal method (str; default: 'PROFILE')
169s bsremove-areas: Bias areas to use (Xl0:Xr0:Yl0:Yr0, ...
169s ,Xln:Xrn:Yln:Yrn) (str; default: '5:40:0:4095')
169s bsremove-sigma: Sigma Clipping: sigma threshold factor (float;
169s default: 2.5)
169s bsremove-niter: Sigma Clipping: maximum number of iterations
169s (int; default: 5)
169s bsremove-mfrac: Sigma Clipping: minimum fraction of points
169s accepted/total [0.0..1.0] (float; default: 0.8)
169s bsremove-xorder: Order of X polynomial fit (CURVE method only)
169s (int; default: 1)
169s bsremove-yorder: Order of Y polynomial fit (CURVE method only)
169s (int; default: 1)
169s bsremove-xstep: Sampling step along X (CURVE method only) (int;
169s default: 1)
169s bsremove-ystep: Sampling step along Y (CURVE method only) (int;
169s default: 1)
169s extr-method: Extraction method: 'SUM', 'HORNE' or 'OPTIMAL'
169s (str; default: 'SUM')
169s extr-ron: New bias sigma (RON) value for bias and dark
169s corrected image (float; default: -1.0)
169s extr-psfmodel: PSF profile model: `psfexp', `psfexp2' (str;
169s default: 'psfexp2')
169s extr-psfsigma: Sigma clippging threshold used for rejecting data
169s points during PSF fitting (Horne's sigma). It is
169s used to reject bad pixels and cosmics. (float;
169s default: 7.0)
169s extr-psfniter: Maximum number of iterations used for fitting the
169s PSF profile. (int; default: 2)
169s extr-hewidth: Horne extraction method: Number of extra pixels
169s added to the fiber half-width. (int; default: 2)
169s extr-hmingood: Horne extraction method: Minimum number of points
169s used for the profile fit. It sets the lower limit
169s of data points for the pixel rejection. (int;
169s default: 3)
169s extr-omfrac: Optimal extraction method: Minimum fraction of
169s the data points used for fitting the fiber
169s profiles. It sets the lower limit for the pixel
169s rejection. (float; default: 0.9)
169s extr-owfactor: Optimal extraction method: Factor by which the
169s fiber PSF half width is multiplied. Adjacent
169s spectra within this area are assumed to affect
169s the spectrum being extracted. (float; default:
169s 3.0)
169s extr-obkgorder: Optimal extraction method: Order of the
169s polynomial background model, which is fitted for
169s each wavelength bin along the spatial direction.
169s (int; default: 2)
169s flat-apply: Controls the flat field correction. (bool;
169s default: False)
169s transmission-apply: Controls the fiber to fiber transmission
169s correction. (bool; default: False)
169s rbin-method: Method to use : `linear' or `spline' (str;
169s default: 'linear')
169s rbin-xresid: Use x residuals during rebinning? `true'/`false'
169s (bool; default: True)
169s rbin-lstep: Lambda step size, only used if scaling method is
169s 'linear' (float; default: 0.005)
169s rbin-scmethod: Scaling method: `log' or `linear' (str; default:
169s 'linear')
169s rbin-size: Size of output rebinned spectra, 0 means
169s calculate size based on wavelength range and
169s lambda stepsize (int; default: 0)
169s rbin-range: Rebinning range: `setup' or `common' (str;
169s default: 'common')
169s recon-min: Minimum wavelength for image reconstruction
169s (float; default: 0.0)
169s recon-max: Maximum wavelength for image reconstruction
169s (float; default: 0.0)
169s recon-cube: Turns data cube creation on and off (bool;
169s default: True)
169s recon-format: Selects the file format for cubes (str; default:
169s 'single')
169s flx-skycorr: Correct spectra for the sky emission (bool;
169s default: False)
169s max-dist: Standar star search radius (float; default:
169s 60.0)
169s Author: Giraffe Pipeline
169s
169s
169s Recipe giframestack:
169s version 2.16.10
169s Parameters: {'stack-method': 'average', 'stack-ksigmalow': 5.0, 'stack-ksigmahigh': 5.0, 'stack-minreject': 1, 'stack-maxreject': 1}
169s Docstring: Creates a stacked image from a set of raw images.
169s
169s TBD
169s
169s Parameters:
169s stack-method: Stacking method: average, median, minmax or ksigma
169s (str; default: 'average')
169s stack-ksigmalow: Lower threshold multiplier for method ksigma
169s (float; default: 5.0)
169s stack-ksigmahigh: Upper threshold multiplier for method ksigma
169s (float; default: 5.0)
169s stack-minreject: Minimum rejection level for method minmax (int;
169s default: 1)
169s stack-maxreject: Maximum rejection level for method minmax (int;
169s default: 1)
169s Author: Giraffe Pipeline
169s
169s
169s Recipe gimasterbias:
169s version 2.16.10
169s Parameters: {'stack-method': 'average', 'stack-ksigmalow': 5.0, 'stack-ksigmahigh': 5.0, 'stack-minreject': 1, 'stack-maxreject': 1, 'mbias-oscremove': False, 'mbias-bpxclean': False, 'bpm-create': True, 'bpm-factor': 5.0, 'bpm-frac': 0.15}
169s Docstring: Creates a master bias image from a set of raw biases.
169s
169s For detailed information please refer to the GIRAFFE pipeline user
169s manual. It is available at http://www.eso.org/pipelines.
169s
169s Parameters:
169s stack-method: Stacking method: average, median, minmax or ksigma
169s (str; default: 'average')
169s stack-ksigmalow: Lower threshold multiplier for method ksigma
169s (float; default: 5.0)
169s stack-ksigmahigh: Upper threshold multiplier for method ksigma
169s (float; default: 5.0)
169s stack-minreject: Minimum rejection level for method minmax (int;
169s default: 1)
169s stack-maxreject: Maximum rejection level for method minmax (int;
169s default: 1)
169s mbias-oscremove: Remove pre- and over-scan regions from the created
169s master bias image. (bool; default: False)
169s mbias-bpxclean: Correct master bias image for bad pixels (bool;
169s default: False)
169s bpm-create: Create bad pixel map using a simple thresholding
169s algorithm. (temporary!) (bool; default: True)
169s bpm-factor: Readout noise multiplier defining the valid range
169s of pixel values for searching bad pixels. (float;
169s default: 5.0)
169s bpm-frac: Maximum fraction of pixels which may be flagged as
169s 'bad. If more pixels are found to be 'bad a warning
169s is issued. (float; default: 0.15)
169s Author: Giraffe Pipeline
169s
169s
169s autopkgtest [21:32:00]: test test-recipe.py: -----------------------]
169s autopkgtest [21:32:00]: test test-recipe.py: - - - - - - - - - - results - - - - - - - - - -
169s test-recipe.py PASS
170s autopkgtest [21:32:01]: @@@@@@@@@@@@@@@@@@@@ summary
170s test-recipe.py PASS
182s Creating nova instance adt-noble-arm64-cpl-plugin-giraf-20240307-212910-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240307.img (UUID 00fdfee3-5cf8-4806-8086-451645753def)...