0s autopkgtest [17:36:13]: starting date and time: 2024-03-24 17:36:13+0000 0s autopkgtest [17:36:13]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [17:36:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f3sadvpk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade circlator --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-1.secgroup --name adt-noble-arm64-circlator-20240324-172228-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 369s Creating nova instance adt-noble-arm64-circlator-20240324-172228-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 943dd583-2042-4622-b4ce-bdf10ad153ac)... 369s nova boot failed (attempt #1): 369s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader') 369s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader') 369s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken') 369s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth') 369s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password') 369s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token') 369s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password') 369s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP') 369s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps6.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10" 369s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps6.canonical.com:5000 369s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267 369s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Sun, 24 Mar 2024 17:36:39 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-9d2b1794-8571-4825-a1d9-f005d582cb11 369s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps6.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}} 369s DEBUG (session:946) GET call to https://keystone.ps6.canonical.com:5000/v3 used request id req-9d2b1794-8571-4825-a1d9-f005d582cb11 369s DEBUG (base:182) Making authentication request to https://keystone.ps6.canonical.com:5000/v3/auth/tokens 369s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 12445 369s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "369f50a481564a2c9433776a4ebd224d", "name": "prod-proposed-migration-arm64", "password_expires_at": null}, "audit_ids": ["BFCgAAJORkWhmptytMpPIw"], "expires_at": "2024-03-25T17:36:39.000000Z", "issued_at": "2024-03-24T17:36:39.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "bd8b3df3f03d43a0a9303b7c0434fdab", "name": "prod-proposed-migration-arm64_project"}, "is_domain": false, "roles": [{"id": "15cf997650e345b7b21c02b5cdb7d84a", "name": "member"}, {"id": "86bf3043974746c2bf52c2a9f362f986", "name": "reader"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "213cdf38198c4581bd5b7d6d0836923b", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "67061eee26944a1a8009f9d07be19738", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "fc88c52c749a47d08a24a2c7efbde01b", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/", "region": "prodstack6"}], "id": "06e4714942634054bf9aa11715312b4e", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "8aa44c94b63746bd9b37f1008ad55fa8", "interface": "admin", "region_id": "prodstack6", "url": "https://aodh-admin.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "92cf08a80a0242ebbca8ec893cf332b1", "interface": "public", "region_id": "prodstack6", "url": "https://aodh.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "d8139c6e11ae4edcb78981c12bd53212", "interface": "internal", "region_id": "prodstack6", "url": "https://aodh-internal.ps6.canonical.com:8042", "region": "prodstack6"}], "id": "2fb939b0b969435c8f0c5fa4edb4de94", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "a49fcc80e658411885f88cdd8432a571", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "b23866fddba8415885b06c064c34b94b", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "f84ae55197f94b8392a678f35c82ca26", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8000/v1", "region": "prodstack6"}], "id": "3d4b59f7dab644b2b527e8e96b697545", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "2e0143334c6241169f45f1c11970c6bc", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "5e19c32243c04a3faf1e5f9ab900c260", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "b3fc5c88ec8543a691fec75726b86967", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8004/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "43b926205044476b8093b18d8ce0a9e4", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "a47569b96e5b4146a312e4673504557c", "interface": "public", "region_id": "prodstack6", "url": "https://glance.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "bba35c4ab04f4114a2a34e65568537bd", "interface": "internal", "region_id": "prodstack6", "url": "https://glance-internal.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "ef769f1117c74a62a279131486c89628", "interface": "admin", "region_id": "prodstack6", "url": "https://glance-admin.ps6.canonical.com:9292", "region": "prodstack6"}], "id": "49de724549524bd78e9cd46a4477226f", "type": "image", "name": "glance"}, {"endpoints": [{"id": "a1a41e9a1e2d42e5b6cd5380cd1e21bf", "interface": "admin", "region_id": "prodstack6", "url": "https://cinder-admin.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "d2309a99724b4111827482c68a832c0c", "interface": "public", "region_id": "prodstack6", "url": "https://cinder.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "f8a02e3949ff42afa772eb5e74dbef9f", "interface": "internal", "region_id": "prodstack6", "url": "https://cinder-internal.ps6.canonical.com:8776/v3/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "5bf6578a631349e3af4bf36d7adb18e1", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "01d84128f36444e9b01549b86bd69116", "interface": "admin", "region_id": "prodstack6", "url": "https://barbican-admin.ps6.canonical.com:9312", "region": "prodstack6"}, {"id": "0ce4a8777e0b40a88f7fc0f77e34a605", "interface": "public", "region_id": "prodstack6", "url": "https://barbican.ps6.canonical.com:9311", "region": "prodstack6"}, {"id": "f507ba49e4a7435cb330234217c92449", "interface": "internal", "region_id": "prodstack6", "url": "https://barbican-internal.ps6.canonical.com:9311", "region": "prodstack6"}], "id": "62cb1c3d9f6c45979c13516a6b3ff114", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3cb6121bd8f14da8aa2fba7be823a2b4", "interface": "internal", "region_id": "prodstack6", "url": "https://neutron-internal.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "46ba11d133fe4e8f9e8f9097ba737682", "interface": "admin", "region_id": "prodstack6", "url": "https://neutron-admin.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "d872eb6aa23d40009165aa3dcdce3948", "interface": "public", "region_id": "prodstack6", "url": "https://neutron.ps6.canonical.com:9696", "region": "prodstack6"}], "id": "759cb6fdfbc146dd8b9d1ba444c4b9db", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "4349d565f72446da9699269f85df5e8b", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "a483dcc58f5e415e9ec739c94474e609", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "c1f14236723e42878562d8dd63d5a6a0", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v2/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "93fc4008035946deb1f433c2dd905a5d", "type": "sharev2", "name": "manilav2"}, {"endpoints": [{"id": "0fa148793c7249c8b187b6b4ff425731", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "555ade266a6b4bcc81b6e5abf607aec5", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "7dad1a7b1552465686424fc014463173", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift/simplestreams/data", "region": "prodstack6"}], "id": "977dd359af1a4fcc91a9daf4dc33b0f3", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "12d30eabcdec4831bd15273d55b1cbab", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "29d35b2b483346479f1ff1a13604d50e", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "4aa1422b8f5945d8aed9ba6a8d670e5c", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v1/bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}], "id": "ac5e4f28fa794cde99f1d7ffc1b664e5", "type": "share", "name": "manila"}, {"endpoints": [{"id": "c7db93d54a684d8caeae1d9e18a59118", "interface": "admin", "region_id": "prodstack6", "url": "https://nova-admin.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "dd7a796f401b477f9f1b5bbc05747d8d", "interface": "public", "region_id": "prodstack6", "url": "https://nova.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "e7ecb038d830462ea67b0b463af5e013", "interface": "internal", "region_id": "prodstack6", "url": "https://nova-internal.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}], "id": "b4519af08e174d4a8333a2d14ac3ba3b", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "02ef5b6154934ffd97d8b5b8e4d70d2a", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "2741abe526e94842a4fa801423ba1ef0", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_bd8b3df3f03d43a0a9303b7c0434fdab", "region": "prodstack6"}, {"id": "3742f9406c604516933d6fd8c29e0880", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift", "region": "prodstack6"}], "id": "c7f07a7b3b3c408c96200dfd1d1a0f6f", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "06d4ed6c160a43f2b7fa7f80ad1dc709", "interface": "internal", "region_id": "prodstack6", "url": "https://designate-internal.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "1e240624a50c4ca0aaa6ef63cbc94f1b", "interface": "admin", "region_id": "prodstack6", "url": "https://designate-admin.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "f94d7d17997a43fd9c63b34c43301c6e", "interface": "public", "region_id": "prodstack6", "url": "https://designate.ps6.canonical.com:9001", "region": "prodstack6"}], "id": "cf82013d63844fedbe96bcacb6bd1fef", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "4a688340be464710bfa60bf3f88f41c4", "interface": "admin", "region_id": "prodstack6", "url": "https://gnocchi-admin.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "a5a95506c96d4716adb4efc3ac9051be", "interface": "public", "region_id": "prodstack6", "url": "https://gnocchi.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "eebc17a086834f8fa8bb6b35c8061a8c", "interface": "internal", "region_id": "prodstack6", "url": "https://gnocchi-internal.ps6.canonical.com:8041", "region": "prodstack6"}], "id": "d10589e854a446a5b852593f33f170a7", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "08f66df28d0f47f3bec12f29e06d85ac", "interface": "admin", "region_id": "prodstack6", "url": "https://keystone-admin.ps6.canonical.com:35357/v3", "region": "prodstack6"}, {"id": "46d270b45ceb42db902f4d241afa6a70", "interface": "public", "region_id": "prodstack6", "url": "https://keystone.ps6.canonical.com:5000/v3", "region": "prodstack6"}, {"id": "a4addee11d9349cfa46ec6660dbad947", "interface": "internal", "region_id": "prodstack6", "url": "https://keystone-internal.ps6.canonical.com:5000/v3", "region": "prodstack6"}], "id": "deb38a775a9b4e87a8de9e3eed779882", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "18b4af5f40664babb94e884c6a53ccf3", "interface": "admin", "region_id": "prodstack6", "url": "https://octavia-admin.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "2b6f7ba7f9944ee1aebd6dccc5223b2d", "interface": "internal", "region_id": "prodstack6", "url": "https://octavia-internal.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "5e3012e9c79e4890be4d964b6208f5c6", "interface": "public", "region_id": "prodstack6", "url": "https://octavia.ps6.canonical.com:9876", "region": "prodstack6"}], "id": "e00337be20d54948b66a1c3109b885c6", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "2d2942b35f3041389ad810f679d02f22", "interface": "public", "region_id": "prodstack6", "url": "https://placement.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "2e3beaac7ac14284b72e2592820ad725", "interface": "admin", "region_id": "prodstack6", "url": "https://placement-admin.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "91060f6df9ae444f81808adf40540d94", "interface": "internal", "region_id": "prodstack6", "url": "https://placement-internal.ps6.canonical.com:8778", "region": "prodstack6"}], "id": "edc6e37f154f4c0ab3dd4d52b82bf873", "type": "placement", "name": "placement"}]}} 369s REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}a3df1a314a37edeb39da3375ba4b2b2e5511c50ac286ff35d37529454876373f" 369s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}a3df1a314a37edeb39da3375ba4b2b2e5511c50ac286ff35d37529454876373f" 369s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps6.canonical.com:8774 369s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0 369s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Sun, 24 Mar 2024 17:36:39 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-4d94803a-3153-4978-a681-8e6145b9052e x-openstack-request-id: req-4d94803a-3153-4978-a681-8e6145b9052e 369s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Sun, 24 Mar 2024 17:36:39 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-4d94803a-3153-4978-a681-8e6145b9052e x-openstack-request-id: req-4d94803a-3153-4978-a681-8e6145b9052e 369s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged. 369s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged. 369s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397 369s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Sun, 24 Mar 2024 17:36:39 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-2ee6ff58-2c76-4473-b21d-a39c8891bece x-openstack-request-id: req-2ee6ff58-2c76-4473-b21d-a39c8891bece 369s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Sun, 24 Mar 2024 17:36:39 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-2ee6ff58-2c76-4473-b21d-a39c8891bece x-openstack-request-id: req-2ee6ff58-2c76-4473-b21d-a39c8891bece 369s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}} 369s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}} 369s GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-2ee6ff58-2c76-4473-b21d-a39c8891bece 369s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-2ee6ff58-2c76-4473-b21d-a39c8891bece 369s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader') 369s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader') 369s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken') 369s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth') 369s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password') 369s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token') 369s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password') 369s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth') 369s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP') 369s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/943dd583-2042-4622-b4ce-bdf10ad153ac -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}a3df1a314a37edeb39da3375ba4b2b2e5511c50ac286ff35d37529454876373f" -H "X-OpenStack-Nova-API-Version: 2.87" 369s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps6.canonical.com:9292 369s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/943dd583-2042-4622-b4ce-bdf10ad153ac HTTP/1.1" 200 1935 369s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 1935 Content-Type: application/json Date: Sun, 24 Mar 2024 17:36:40 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-4a08329d-230b-4aab-8a69-600af6f7361a 369s DEBUG (session:580) RESP BODY: {"base_image_ref": "09c3944a-cd0d-425d-b22f-cde7ec51d155", "boot_roles": "member,reader", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "virt", "hw_video_model": "virtio", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "bc4d8474-2306-4932-a029-eb05e6aa0070", "owner_id": "bd8b3df3f03d43a0a9303b7c0434fdab", "owner_project_name": "prod-proposed-migration-arm64_project", "owner_specified.openstack.md5": "087a26f2222dab8516c553374a9d1b4d", "owner_specified.openstack.object": "images/adt/ubuntu-noble-arm64-server-20240201.img", "owner_specified.openstack.sha256": "095b278df09de76f01843de514daf3f8eb0a0cc67fee4b3491161913153619db", "owner_user_name": "prod-proposed-migration-arm64", "user_id": "369f50a481564a2c9433776a4ebd224d", "name": "adt/ubuntu-noble-arm64-server-20240324.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2340683776, "virtual_size": 21474836480, "status": "active", "checksum": "02217aaa63f3d49965efbdca847c5c0e", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "bd8b3df3f03d43a0a9303b7c0434fdab", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "fe5802fc52ec80a7347f29b260d672bc687386dd19d42565cf2df8da873e45471382efffbf170f29d30990636735cf90a3d2d75240f91e8b686c49ccc9dc9b83", "id": "943dd583-2042-4622-b4ce-bdf10ad153ac", "created_at": "2024-03-24T04:06:45Z", "updated_at": "2024-03-24T04:07:10Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/943dd583-2042-4622-b4ce-bdf10ad153ac/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/943dd583-2042-4622-b4ce-bdf10ad153ac/snap", "tags": [], "self": "/v2/images/943dd583-2042-4622-b4ce-bdf10ad153ac", "file": "/v2/images/943dd583-2042-4622-b4ce-bdf10ad153ac/file", "schema": "/v2/schemas/image", "stores": "ceph"} 369s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/943dd583-2042-4622-b4ce-bdf10ad153ac used request id req-4a08329d-230b-4aab-8a69-600af6f7361a 369s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}a3df1a314a37edeb39da3375ba4b2b2e5511c50ac286ff35d37529454876373f" -H "X-OpenStack-Nova-API-Version: 2.87" 369s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/autopkgtest HTTP/1.1" 404 84 369s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 84 Content-Type: application/json; charset=UTF-8 Date: Sun, 24 Mar 2024 17:36:40 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-a542b857-e32f-4f04-8e84-d016f1dadfd8 x-openstack-request-id: req-a542b857-e32f-4f04-8e84-d016f1dadfd8 369s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest could not be found."}} 369s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest used request id req-a542b857-e32f-4f04-8e84-d016f1dadfd8 369s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}a3df1a314a37edeb39da3375ba4b2b2e5511c50ac286ff35d37529454876373f" -H "X-OpenStack-Nova-API-Version: 2.87" 369s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 1739 369s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 1739 Content-Type: application/json Date: Sun, 24 Mar 2024 17:36:40 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-6a7f2773-2190-461c-a9f3-e109ee520465 x-openstack-request-id: req-6a7f2773-2190-461c-a9f3-e109ee520465 369s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "062428d9-35a1-461f-a33a-38436ed516b4", "name": "autopkgtest-cpu8-ram16-disk160-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/062428d9-35a1-461f-a33a-38436ed516b4"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/062428d9-35a1-461f-a33a-38436ed516b4"}], "description": null}, {"id": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "name": "autopkgtest", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}], "description": null}, {"id": "8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4", "name": "autopkgtest-cpu2-ram4-disk20-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8ebe34fb-1390-4cc7-bbe5-0d38c80f2fb4"}], "description": null}, {"id": "a8256f9e-53ee-4584-ad7f-60e088825b83", "name": "autopkgtest-big", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/a8256f9e-53ee-4584-ad7f-60e088825b83"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/a8256f9e-53ee-4584-ad7f-60e088825b83"}], "description": null}, {"id": "cfc564ac-9f6e-4477-91c4-a89ccb4b744e", "name": "autopkgtest-cpu4-ram8-disk100-arm64", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/cfc564ac-9f6e-4477-91c4-a89ccb4b744e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/cfc564ac-9f6e-4477-91c4-a89ccb4b744e"}], "description": null}]} 369s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None used request id req-6a7f2773-2190-461c-a9f3-e109ee520465 369s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}a3df1a314a37edeb39da3375ba4b2b2e5511c50ac286ff35d37529454876373f" -H "X-OpenStack-Nova-API-Version: 2.87" 369s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 HTTP/1.1" 200 613 369s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 613 Content-Type: application/json Date: Sun, 24 Mar 2024 17:36:40 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-2bffa746-cfc7-4c10-98cf-beb783953d93 x-openstack-request-id: req-2bffa746-cfc7-4c10-98cf-beb783953d93 369s DEBUG (session:580) RESP BODY: {"flavor": {"id": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "name": "autopkgtest", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-arm64", "hw_rng:allowed": "True"}}} 369s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/8d27c5f0-65c7-4018-b3f7-50463875ab09 used request id req-2bffa746-cfc7-4c10-98cf-beb783953d93 369s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps6.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}a3df1a314a37edeb39da3375ba4b2b2e5511c50ac286ff35d37529454876373f" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-noble-arm64-circlator-20240324-172228-juju-7f2275-prod-proposed-migration-environment-2", "imageRef": "943dd583-2042-4622-b4ce-bdf10ad153ac", "flavorRef": "8d27c5f0-65c7-4018-b3f7-50463875ab09", "user_data": "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", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-2", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-1.secgroup"}], "networks": [{"uuid": "6ea4839c-9760-4b54-ab7d-70a6312667d1"}]}}' 369s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 403 115 369s DEBUG (session:548) RESP: [403] Connection: Keep-Alive Content-Length: 115 Content-Type: application/json; charset=UTF-8 Date: Sun, 24 Mar 2024 17:36:40 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-75c9d40a-c283-44c1-9519-740062204133 x-openstack-request-id: req-75c9d40a-c283-44c1-9519-740062204133 369s DEBUG (session:580) RESP BODY: {"forbidden": {"code": 403, "message": "Quota exceeded for cores: Requested 2, but already used 140 of 140 cores"}} 369s DEBUG (session:936) POST call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers used request id req-75c9d40a-c283-44c1-9519-740062204133 369s DEBUG (shell:822) Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-75c9d40a-c283-44c1-9519-740062204133) 369s Traceback (most recent call last): 369s File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main 369s OpenStackComputeShell().main(argv) 369s File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main 369s args.func(self.cs, args) 369s File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 971, in do_boot 369s server = cs.servers.create(*boot_args, **boot_kwargs) 369s File "/usr/lib/python3/dist-packages/novaclient/v2/servers.py", line 1477, in create 369s return self._boot(response_key, *boot_args, **boot_kwargs) 369s File "/usr/lib/python3/dist-packages/novaclient/v2/servers.py", line 836, in _boot 369s return self._create('/servers', body, response_key, 369s File "/usr/lib/python3/dist-packages/novaclient/base.py", line 363, in _create 369s resp, body = self.api.client.post(url, body=body) 369s File "/usr/lib/python3/dist-packages/keystoneauth1/adapter.py", line 392, in post 369s return self.request(url, 'POST', **kwargs) 369s File "/usr/lib/python3/dist-packages/novaclient/client.py", line 78, in request 369s raise exceptions.from_response(resp, body, url, method) 369s novaclient.exceptions.Forbidden: Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-75c9d40a-c283-44c1-9519-740062204133) 369s ERROR (Forbidden): Quota exceeded for cores: Requested 2, but already used 140 of 140 cores (HTTP 403) (Request-ID: req-75c9d40a-c283-44c1-9519-740062204133) 370s autopkgtest [17:42:23]: testbed dpkg architecture: arm64 371s autopkgtest [17:42:24]: testbed apt version: 2.7.12 371s autopkgtest [17:42:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 371s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 371s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 372s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 372s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 372s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 372s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [710 kB] 372s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 372s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 372s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 372s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 372s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 372s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [70.1 kB] 372s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 374s Fetched 9851 kB in 2s (5591 kB/s) 374s Reading package lists... 379s Reading package lists... 379s Building dependency tree... 379s Reading state information... 379s Calculating upgrade... 379s The following packages will be REMOVED: 379s libssl3 379s The following NEW packages will be installed: 379s libssl3t64 379s The following packages have been kept back: 379s curl 379s The following packages will be upgraded: 379s openssl 379s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 379s Need to get 2777 kB of archives. 379s After this operation, 139 kB of additional disk space will be used. 379s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 379s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 380s Fetched 2777 kB in 1s (3642 kB/s) 380s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 380s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 380s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 380s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 380s wget depends on libssl3 (>= 3.0.0). 380s u-boot-tools depends on libssl3 (>= 3.0.0). 380s tnftp depends on libssl3 (>= 3.0.0). 380s tcpdump depends on libssl3 (>= 3.0.0). 380s systemd-resolved depends on libssl3 (>= 3.0.0). 380s systemd depends on libssl3 (>= 3.0.0). 380s sudo depends on libssl3 (>= 3.0.0). 380s sbsigntool depends on libssl3 (>= 3.0.0). 380s rsync depends on libssl3 (>= 3.0.0). 380s python3-cryptography depends on libssl3 (>= 3.0.0). 380s openssh-server depends on libssl3 (>= 3.0.10). 380s openssh-client depends on libssl3 (>= 3.0.10). 380s mtd-utils depends on libssl3 (>= 3.0.0). 380s mokutil depends on libssl3 (>= 3.0.0). 380s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 380s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 380s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 380s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 380s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 380s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 380s libnvme1 depends on libssl3 (>= 3.0.0). 380s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 380s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 380s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 380s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 380s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 380s kmod depends on libssl3 (>= 3.0.0). 380s dhcpcd-base depends on libssl3 (>= 3.0.0). 380s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 380s 380s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 380s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 380s Selecting previously unselected package libssl3t64:arm64. 380s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74808 files and directories currently installed.) 380s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 380s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 380s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 380s Setting up openssl (3.0.13-0ubuntu2) ... 380s Processing triggers for man-db (2.12.0-3) ... 381s Processing triggers for libc-bin (2.39-0ubuntu6) ... 381s Reading package lists... 382s Building dependency tree... 382s Reading state information... 383s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 384s sh: Attempting to set up Debian/Ubuntu apt sources automatically 384s sh: Distribution appears to be Ubuntu 384s Reading package lists... 385s Building dependency tree... 385s Reading state information... 385s eatmydata is already the newest version (131-1). 385s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 385s Reading package lists... 386s Building dependency tree... 386s Reading state information... 390s dbus is already the newest version (1.14.10-4ubuntu1). 390s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 390s Reading package lists... 390s Building dependency tree... 390s Reading state information... 390s rng-tools-debian is already the newest version (2.4). 390s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 390s Reading package lists... 390s Building dependency tree... 390s Reading state information... 390s The following packages will be REMOVED: 390s cloud-init* python3-configobj* python3-debconf* 390s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 390s After this operation, 3256 kB disk space will be freed. 390s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74821 files and directories currently installed.) 390s Removing cloud-init (24.1.2-0ubuntu1) ... 391s Removing python3-configobj (5.0.8-3) ... 391s Removing python3-debconf (1.5.86) ... 391s Processing triggers for man-db (2.12.0-3) ... 392s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74432 files and directories currently installed.) 392s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 392s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 392s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 392s invoke-rc.d: policy-rc.d denied execution of try-restart. 393s Reading package lists... 393s Building dependency tree... 393s Reading state information... 393s linux-generic is already the newest version (6.8.0-11.11+1). 393s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 394s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 394s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 394s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 396s Reading package lists... 396s Reading package lists... 396s Building dependency tree... 396s Reading state information... 397s Calculating upgrade... 397s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 397s Reading package lists... 397s Building dependency tree... 397s Reading state information... 398s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 398s autopkgtest [17:42:51]: rebooting testbed after setup commands that affected boot 427s autopkgtest [17:43:20]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 430s autopkgtest [17:43:23]: @@@@@@@@@@@@@@@@@@@@ apt-source circlator 433s Get:1 http://ftpmaster.internal/ubuntu noble/universe circlator 1.5.6-11 (dsc) [1672 B] 433s Get:2 http://ftpmaster.internal/ubuntu noble/universe circlator 1.5.6-11 (tar) [5724 kB] 433s Get:3 http://ftpmaster.internal/ubuntu noble/universe circlator 1.5.6-11 (diff) [6152 B] 433s gpgv: Signature made Sat Dec 2 21:39:17 2023 UTC 433s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 433s gpgv: Can't check signature: No public key 433s dpkg-source: warning: cannot verify inline signature for ./circlator_1.5.6-11.dsc: no acceptable signature found 433s autopkgtest [17:43:26]: testing package circlator version 1.5.6-11 434s autopkgtest [17:43:27]: build not needed 436s autopkgtest [17:43:29]: test run-unit-test: preparing testbed 441s Reading package lists... 441s Building dependency tree... 441s Reading state information... 442s Starting pkgProblemResolver with broken count: 0 442s Starting 2 pkgProblemResolver with broken count: 0 442s Done 442s The following additional packages will be installed: 442s aglfn binfmt-support bwa ca-certificates-java canu circlator 442s default-jre-headless fastaq fastjar fontconfig fontconfig-config 442s fonts-dejavu-core fonts-dejavu-mono gnuplot-data gnuplot-nox jaligner 442s jarwrapper java-common libapache-pom-java libasound2 libasound2-data 442s libatinject-jsr330-api-java libavahi-client3 libavahi-common-data 442s libavahi-common3 libcairo2 libcommons-compress-java libcommons-parent-java 442s libcups2 libdatrie1 libdeflate0 liberror-prone-java libfastutil-java 442s libfilesys-df-perl libfontconfig1 libgd3 libgomp1 libgraphite2-3 442s libguava-java libharfbuzz0b libhts3 libhtscodecs2 libjbig0 libjpeg-turbo8 442s libjpeg8 libjsr305-java liblcms2-2 liblerc4 liblua5.4-0 libpango-1.0-0 442s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 442s libsharpyuv0 libsnappy1v5 libssw-java libthai-data libthai0 libtiff6 442s libwebp7 libxcb-render0 libxcb-shm0 libxpm4 libxrender1 libxslt1.1 mhap 442s mummer openjdk-21-jre-headless prodigal python3-all python3-distutils 442s python3-et-xmlfile python3-iniconfig python3-lib2to3 python3-lxml 442s python3-openpyxl python3-packaging python3-pluggy python3-pymummer 442s python3-pysam python3-pytest samtools 442s Suggested packages: 442s nanopolish default-jre gnuplot-doc libasound2-plugins alsa-utils 442s libatinject-jsr330-api-java-doc libasm-java libxz-java cups-common 442s libgd-tools libjsr305-java-doc liblcms2-utils pcscd libnss-mdns 442s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 442s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic python-lxml-doc 442s python-openpyxl-doc cwltool 442s Recommended packages: 442s spades fonts-liberation groff alsa-ucm-conf alsa-topology-conf python3-bs4 442s python3-cssselect python3-html5lib python3-pil 442s The following NEW packages will be installed: 442s aglfn autopkgtest-satdep binfmt-support bwa ca-certificates-java canu 442s circlator default-jre-headless fastaq fastjar fontconfig fontconfig-config 442s fonts-dejavu-core fonts-dejavu-mono gnuplot-data gnuplot-nox jaligner 442s jarwrapper java-common libapache-pom-java libasound2 libasound2-data 442s libatinject-jsr330-api-java libavahi-client3 libavahi-common-data 442s libavahi-common3 libcairo2 libcommons-compress-java libcommons-parent-java 442s libcups2 libdatrie1 libdeflate0 liberror-prone-java libfastutil-java 442s libfilesys-df-perl libfontconfig1 libgd3 libgomp1 libgraphite2-3 442s libguava-java libharfbuzz0b libhts3 libhtscodecs2 libjbig0 libjpeg-turbo8 442s libjpeg8 libjsr305-java liblcms2-2 liblerc4 liblua5.4-0 libpango-1.0-0 442s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 442s libsharpyuv0 libsnappy1v5 libssw-java libthai-data libthai0 libtiff6 442s libwebp7 libxcb-render0 libxcb-shm0 libxpm4 libxrender1 libxslt1.1 mhap 442s mummer openjdk-21-jre-headless prodigal python3-all python3-distutils 442s python3-et-xmlfile python3-iniconfig python3-lib2to3 python3-lxml 442s python3-openpyxl python3-packaging python3-pluggy python3-pymummer 442s python3-pysam python3-pytest samtools 442s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 442s Need to get 92.5 MB/92.5 MB of archives. 442s After this operation, 351 MB of additional disk space will be used. 442s Get:1 /tmp/autopkgtest.jArSXS/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 442s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 binfmt-support arm64 2.2.2-6 [55.7 kB] 445s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 bwa arm64 0.7.17-7 [192 kB] 445s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 445s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 445s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 445s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libfilesys-df-perl arm64 0.92-7build2 [11.0 kB] 445s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 445s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 445s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 445s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 445s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 445s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 445s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 445s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 445s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 445s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 445s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 445s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 445s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 445s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 445s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 445s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 445s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 445s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 445s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 445s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 fastjar arm64 2:0.98-7 [61.9 kB] 445s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 jarwrapper all 0.79 [10.3 kB] 445s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B] 445s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 445s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB] 445s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] 445s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] 445s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] 445s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] 445s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libguava-java all 32.0.1-1 [2692 kB] 445s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 jaligner all 1.0+dfsg-11 [136 kB] 445s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libssw-java arm64 1.1-14 [18.0 kB] 445s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 mhap all 2.1.3+dfsg-3 [160 kB] 445s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 445s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot-data all 5.4.4+dfsg1-2build1 [74.6 kB] 445s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 445s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 445s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 445s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 445s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 445s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 445s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 445s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 445s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 445s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 445s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 445s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 445s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libgd3 arm64 2.3.3-9ubuntu1 [119 kB] 445s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 445s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 445s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 445s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 445s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 445s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 445s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 445s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 445s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 gnuplot-nox arm64 5.4.4+dfsg1-2build1 [879 kB] 445s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 canu arm64 2.2+dfsg-5 [1500 kB] 445s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 445s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 libhts3 arm64 1.18+ds-1 [422 kB] 445s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 samtools arm64 1.19.2-1 [584 kB] 445s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 fastaq all 3.17.0-6 [47.9 kB] 445s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-et-xmlfile all 1.0.1-2.1 [9224 B] 445s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.39-0exp1 [166 kB] 445s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.1.0-1 [2042 kB] 445s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-openpyxl all 3.1.2+dfsg-6 [152 kB] 445s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 445s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 mummer arm64 3.23+dfsg-8 [673 kB] 445s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pymummer all 0.11.0-4 [17.1 kB] 445s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pysam arm64 0.22.0+ds-1 [4399 kB] 445s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 prodigal arm64 1:2.6.3-6 [822 kB] 445s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 circlator all 1.5.6-11 [4618 kB] 445s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] 445s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] 445s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 445s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 445s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pluggy all 1.4.0-1 [20.4 kB] 445s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pytest all 7.4.4-1 [305 kB] 446s Fetched 92.5 MB in 3s (30.3 MB/s) 446s Selecting previously unselected package binfmt-support. 446s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74377 files and directories currently installed.) 446s Preparing to unpack .../00-binfmt-support_2.2.2-6_arm64.deb ... 446s Unpacking binfmt-support (2.2.2-6) ... 446s Selecting previously unselected package bwa. 446s Preparing to unpack .../01-bwa_0.7.17-7_arm64.deb ... 446s Unpacking bwa (0.7.17-7) ... 446s Selecting previously unselected package ca-certificates-java. 446s Preparing to unpack .../02-ca-certificates-java_20240118_all.deb ... 446s Unpacking ca-certificates-java (20240118) ... 446s Selecting previously unselected package libgomp1:arm64. 446s Preparing to unpack .../03-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 446s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 446s Selecting previously unselected package libsnappy1v5:arm64. 446s Preparing to unpack .../04-libsnappy1v5_1.1.10-1_arm64.deb ... 446s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 446s Selecting previously unselected package libfilesys-df-perl. 446s Preparing to unpack .../05-libfilesys-df-perl_0.92-7build2_arm64.deb ... 446s Unpacking libfilesys-df-perl (0.92-7build2) ... 446s Selecting previously unselected package java-common. 446s Preparing to unpack .../06-java-common_0.75+exp1_all.deb ... 446s Unpacking java-common (0.75+exp1) ... 446s Selecting previously unselected package libavahi-common-data:arm64. 446s Preparing to unpack .../07-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 446s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 446s Selecting previously unselected package libavahi-common3:arm64. 446s Preparing to unpack .../08-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 446s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 446s Selecting previously unselected package libavahi-client3:arm64. 446s Preparing to unpack .../09-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 446s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 446s Selecting previously unselected package libcups2:arm64. 446s Preparing to unpack .../10-libcups2_2.4.6-0ubuntu3_arm64.deb ... 446s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 446s Selecting previously unselected package liblcms2-2:arm64. 447s Preparing to unpack .../11-liblcms2-2_2.14-2_arm64.deb ... 447s Unpacking liblcms2-2:arm64 (2.14-2) ... 447s Selecting previously unselected package libjpeg-turbo8:arm64. 447s Preparing to unpack .../12-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 447s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 447s Selecting previously unselected package libjpeg8:arm64. 447s Preparing to unpack .../13-libjpeg8_8c-2ubuntu11_arm64.deb ... 447s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 447s Selecting previously unselected package fonts-dejavu-mono. 447s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8_all.deb ... 447s Unpacking fonts-dejavu-mono (2.37-8) ... 447s Selecting previously unselected package fonts-dejavu-core. 447s Preparing to unpack .../15-fonts-dejavu-core_2.37-8_all.deb ... 447s Unpacking fonts-dejavu-core (2.37-8) ... 447s Selecting previously unselected package fontconfig-config. 447s Preparing to unpack .../16-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 447s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 447s Selecting previously unselected package libfontconfig1:arm64. 447s Preparing to unpack .../17-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 447s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 447s Selecting previously unselected package libasound2-data. 447s Preparing to unpack .../18-libasound2-data_1.2.10-3build1_all.deb ... 447s Unpacking libasound2-data (1.2.10-3build1) ... 447s Selecting previously unselected package libasound2:arm64. 447s Preparing to unpack .../19-libasound2_1.2.10-3build1_arm64.deb ... 447s Unpacking libasound2:arm64 (1.2.10-3build1) ... 447s Selecting previously unselected package libgraphite2-3:arm64. 447s Preparing to unpack .../20-libgraphite2-3_1.3.14-2_arm64.deb ... 447s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 447s Selecting previously unselected package libharfbuzz0b:arm64. 447s Preparing to unpack .../21-libharfbuzz0b_8.3.0-2_arm64.deb ... 447s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 447s Selecting previously unselected package libpcsclite1:arm64. 447s Preparing to unpack .../22-libpcsclite1_2.0.0-1_arm64.deb ... 447s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 447s Selecting previously unselected package openjdk-21-jre-headless:arm64. 447s Preparing to unpack .../23-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 447s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 448s Selecting previously unselected package default-jre-headless. 448s Preparing to unpack .../24-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 448s Unpacking default-jre-headless (2:1.21-75+exp1) ... 448s Selecting previously unselected package fastjar. 448s Preparing to unpack .../25-fastjar_2%3a0.98-7_arm64.deb ... 448s Unpacking fastjar (2:0.98-7) ... 448s Selecting previously unselected package jarwrapper. 448s Preparing to unpack .../26-jarwrapper_0.79_all.deb ... 448s Unpacking jarwrapper (0.79) ... 448s Selecting previously unselected package libapache-pom-java. 448s Preparing to unpack .../27-libapache-pom-java_29-2_all.deb ... 448s Unpacking libapache-pom-java (29-2) ... 448s Selecting previously unselected package libcommons-parent-java. 448s Preparing to unpack .../28-libcommons-parent-java_56-1_all.deb ... 448s Unpacking libcommons-parent-java (56-1) ... 448s Selecting previously unselected package libcommons-compress-java. 448s Preparing to unpack .../29-libcommons-compress-java_1.25.0-1_all.deb ... 448s Unpacking libcommons-compress-java (1.25.0-1) ... 448s Selecting previously unselected package libfastutil-java. 449s Preparing to unpack .../30-libfastutil-java_8.5.12+dfsg-1_all.deb ... 449s Unpacking libfastutil-java (8.5.12+dfsg-1) ... 449s Selecting previously unselected package libatinject-jsr330-api-java. 449s Preparing to unpack .../31-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... 449s Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... 449s Selecting previously unselected package liberror-prone-java. 449s Preparing to unpack .../32-liberror-prone-java_2.18.0-1_all.deb ... 449s Unpacking liberror-prone-java (2.18.0-1) ... 449s Selecting previously unselected package libjsr305-java. 449s Preparing to unpack .../33-libjsr305-java_0.1~+svn49-11_all.deb ... 449s Unpacking libjsr305-java (0.1~+svn49-11) ... 449s Selecting previously unselected package libguava-java. 449s Preparing to unpack .../34-libguava-java_32.0.1-1_all.deb ... 449s Unpacking libguava-java (32.0.1-1) ... 449s Selecting previously unselected package jaligner. 449s Preparing to unpack .../35-jaligner_1.0+dfsg-11_all.deb ... 449s Unpacking jaligner (1.0+dfsg-11) ... 449s Selecting previously unselected package libssw-java. 449s Preparing to unpack .../36-libssw-java_1.1-14_arm64.deb ... 449s Unpacking libssw-java (1.1-14) ... 449s Selecting previously unselected package mhap. 449s Preparing to unpack .../37-mhap_2.1.3+dfsg-3_all.deb ... 449s Unpacking mhap (2.1.3+dfsg-3) ... 449s Selecting previously unselected package aglfn. 449s Preparing to unpack .../38-aglfn_1.7+git20191031.4036a9c-2_all.deb ... 449s Unpacking aglfn (1.7+git20191031.4036a9c-2) ... 449s Selecting previously unselected package gnuplot-data. 449s Preparing to unpack .../39-gnuplot-data_5.4.4+dfsg1-2build1_all.deb ... 449s Unpacking gnuplot-data (5.4.4+dfsg1-2build1) ... 449s Selecting previously unselected package libpixman-1-0:arm64. 449s Preparing to unpack .../40-libpixman-1-0_0.42.2-1_arm64.deb ... 449s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 449s Selecting previously unselected package libxcb-render0:arm64. 449s Preparing to unpack .../41-libxcb-render0_1.15-1_arm64.deb ... 449s Unpacking libxcb-render0:arm64 (1.15-1) ... 449s Selecting previously unselected package libxcb-shm0:arm64. 449s Preparing to unpack .../42-libxcb-shm0_1.15-1_arm64.deb ... 449s Unpacking libxcb-shm0:arm64 (1.15-1) ... 449s Selecting previously unselected package libxrender1:arm64. 449s Preparing to unpack .../43-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 449s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 449s Selecting previously unselected package libcairo2:arm64. 449s Preparing to unpack .../44-libcairo2_1.18.0-1_arm64.deb ... 449s Unpacking libcairo2:arm64 (1.18.0-1) ... 449s Selecting previously unselected package libdeflate0:arm64. 449s Preparing to unpack .../45-libdeflate0_1.19-1_arm64.deb ... 449s Unpacking libdeflate0:arm64 (1.19-1) ... 449s Selecting previously unselected package libjbig0:arm64. 449s Preparing to unpack .../46-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 449s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 449s Selecting previously unselected package liblerc4:arm64. 449s Preparing to unpack .../47-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 449s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 449s Selecting previously unselected package libsharpyuv0:arm64. 449s Preparing to unpack .../48-libsharpyuv0_1.3.2-0.4_arm64.deb ... 449s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 449s Selecting previously unselected package libwebp7:arm64. 449s Preparing to unpack .../49-libwebp7_1.3.2-0.4_arm64.deb ... 449s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 449s Selecting previously unselected package libtiff6:arm64. 449s Preparing to unpack .../50-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 449s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 449s Selecting previously unselected package libxpm4:arm64. 449s Preparing to unpack .../51-libxpm4_1%3a3.5.17-1_arm64.deb ... 449s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 449s Selecting previously unselected package libgd3:arm64. 449s Preparing to unpack .../52-libgd3_2.3.3-9ubuntu1_arm64.deb ... 449s Unpacking libgd3:arm64 (2.3.3-9ubuntu1) ... 449s Selecting previously unselected package liblua5.4-0:arm64. 449s Preparing to unpack .../53-liblua5.4-0_5.4.6-3_arm64.deb ... 449s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 449s Selecting previously unselected package fontconfig. 449s Preparing to unpack .../54-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 449s Unpacking fontconfig (2.15.0-1ubuntu1) ... 449s Selecting previously unselected package libthai-data. 449s Preparing to unpack .../55-libthai-data_0.1.29-2_all.deb ... 449s Unpacking libthai-data (0.1.29-2) ... 449s Selecting previously unselected package libdatrie1:arm64. 449s Preparing to unpack .../56-libdatrie1_0.2.13-3_arm64.deb ... 449s Unpacking libdatrie1:arm64 (0.2.13-3) ... 449s Selecting previously unselected package libthai0:arm64. 449s Preparing to unpack .../57-libthai0_0.1.29-2_arm64.deb ... 449s Unpacking libthai0:arm64 (0.1.29-2) ... 449s Selecting previously unselected package libpango-1.0-0:arm64. 449s Preparing to unpack .../58-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 449s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 449s Selecting previously unselected package libpangoft2-1.0-0:arm64. 449s Preparing to unpack .../59-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 449s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 449s Selecting previously unselected package libpangocairo-1.0-0:arm64. 449s Preparing to unpack .../60-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 449s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 449s Selecting previously unselected package gnuplot-nox. 449s Preparing to unpack .../61-gnuplot-nox_5.4.4+dfsg1-2build1_arm64.deb ... 449s Unpacking gnuplot-nox (5.4.4+dfsg1-2build1) ... 449s Selecting previously unselected package canu. 449s Preparing to unpack .../62-canu_2.2+dfsg-5_arm64.deb ... 449s Unpacking canu (2.2+dfsg-5) ... 450s Selecting previously unselected package libhtscodecs2:arm64. 450s Preparing to unpack .../63-libhtscodecs2_1.6.0-1_arm64.deb ... 450s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 450s Selecting previously unselected package libhts3:arm64. 450s Preparing to unpack .../64-libhts3_1.18+ds-1_arm64.deb ... 450s Unpacking libhts3:arm64 (1.18+ds-1) ... 450s Selecting previously unselected package samtools. 450s Preparing to unpack .../65-samtools_1.19.2-1_arm64.deb ... 450s Unpacking samtools (1.19.2-1) ... 450s Selecting previously unselected package fastaq. 450s Preparing to unpack .../66-fastaq_3.17.0-6_all.deb ... 450s Unpacking fastaq (3.17.0-6) ... 450s Selecting previously unselected package python3-et-xmlfile. 450s Preparing to unpack .../67-python3-et-xmlfile_1.0.1-2.1_all.deb ... 450s Unpacking python3-et-xmlfile (1.0.1-2.1) ... 450s Selecting previously unselected package libxslt1.1:arm64. 450s Preparing to unpack .../68-libxslt1.1_1.1.39-0exp1_arm64.deb ... 450s Unpacking libxslt1.1:arm64 (1.1.39-0exp1) ... 450s Selecting previously unselected package python3-lxml:arm64. 450s Preparing to unpack .../69-python3-lxml_5.1.0-1_arm64.deb ... 450s Unpacking python3-lxml:arm64 (5.1.0-1) ... 450s Selecting previously unselected package python3-openpyxl. 450s Preparing to unpack .../70-python3-openpyxl_3.1.2+dfsg-6_all.deb ... 450s Unpacking python3-openpyxl (3.1.2+dfsg-6) ... 450s Selecting previously unselected package python3-packaging. 450s Preparing to unpack .../71-python3-packaging_23.2-1_all.deb ... 450s Unpacking python3-packaging (23.2-1) ... 450s Selecting previously unselected package mummer. 450s Preparing to unpack .../72-mummer_3.23+dfsg-8_arm64.deb ... 450s Unpacking mummer (3.23+dfsg-8) ... 450s Selecting previously unselected package python3-pymummer. 450s Preparing to unpack .../73-python3-pymummer_0.11.0-4_all.deb ... 450s Unpacking python3-pymummer (0.11.0-4) ... 450s Selecting previously unselected package python3-pysam. 450s Preparing to unpack .../74-python3-pysam_0.22.0+ds-1_arm64.deb ... 450s Unpacking python3-pysam (0.22.0+ds-1) ... 450s Selecting previously unselected package prodigal. 450s Preparing to unpack .../75-prodigal_1%3a2.6.3-6_arm64.deb ... 450s Unpacking prodigal (1:2.6.3-6) ... 450s Selecting previously unselected package circlator. 450s Preparing to unpack .../76-circlator_1.5.6-11_all.deb ... 450s Unpacking circlator (1.5.6-11) ... 450s Selecting previously unselected package python3-lib2to3. 450s Preparing to unpack .../77-python3-lib2to3_3.11.5-1_all.deb ... 450s Unpacking python3-lib2to3 (3.11.5-1) ... 451s Selecting previously unselected package python3-distutils. 451s Preparing to unpack .../78-python3-distutils_3.11.5-1_all.deb ... 451s Unpacking python3-distutils (3.11.5-1) ... 451s Selecting previously unselected package python3-all. 451s Preparing to unpack .../79-python3-all_3.12.1-0ubuntu2_arm64.deb ... 451s Unpacking python3-all (3.12.1-0ubuntu2) ... 451s Selecting previously unselected package python3-iniconfig. 451s Preparing to unpack .../80-python3-iniconfig_1.1.1-2_all.deb ... 451s Unpacking python3-iniconfig (1.1.1-2) ... 451s Selecting previously unselected package python3-pluggy. 451s Preparing to unpack .../81-python3-pluggy_1.4.0-1_all.deb ... 451s Unpacking python3-pluggy (1.4.0-1) ... 451s Selecting previously unselected package python3-pytest. 451s Preparing to unpack .../82-python3-pytest_7.4.4-1_all.deb ... 451s Unpacking python3-pytest (7.4.4-1) ... 451s Selecting previously unselected package autopkgtest-satdep. 451s Preparing to unpack .../83-1-autopkgtest-satdep.deb ... 451s Unpacking autopkgtest-satdep (0) ... 451s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 451s Setting up fastjar (2:0.98-7) ... 451s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 451s Setting up liblcms2-2:arm64 (2.14-2) ... 451s Setting up python3-iniconfig (1.1.1-2) ... 451s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 451s Setting up libfastutil-java (8.5.12+dfsg-1) ... 451s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 451s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 451s Setting up libjsr305-java (0.1~+svn49-11) ... 451s Setting up libxpm4:arm64 (1:3.5.17-1) ... 451s Setting up java-common (0.75+exp1) ... 451s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 451s Setting up libdatrie1:arm64 (0.2.13-3) ... 451s Setting up libxcb-render0:arm64 (1.15-1) ... 451s Setting up prodigal (1:2.6.3-6) ... 451s Setting up bwa (0.7.17-7) ... 451s Setting up libfilesys-df-perl (0.92-7build2) ... 451s Setting up libdeflate0:arm64 (1.19-1) ... 451s Setting up libxcb-shm0:arm64 (1.15-1) ... 451s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 451s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 451s Setting up libssw-java (1.1-14) ... 451s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 451s Setting up libasound2-data (1.2.10-3build1) ... 451s Setting up python3-packaging (23.2-1) ... 451s Setting up aglfn (1.7+git20191031.4036a9c-2) ... 451s Setting up libapache-pom-java (29-2) ... 451s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 451s Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... 451s Setting up fonts-dejavu-mono (2.37-8) ... 451s Setting up binfmt-support (2.2.2-6) ... 451s update-binfmts: warning: python3.12 already enabled in kernel. 451s Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service → /usr/lib/systemd/system/binfmt-support.service. 452s Setting up fonts-dejavu-core (2.37-8) ... 452s Setting up libpcsclite1:arm64 (2.0.0-1) ... 452s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 452s Setting up python3-pluggy (1.4.0-1) ... 452s Setting up libwebp7:arm64 (1.3.2-0.4) ... 452s Setting up libasound2:arm64 (1.2.10-3build1) ... 452s Setting up libxslt1.1:arm64 (1.1.39-0exp1) ... 452s Setting up mummer (3.23+dfsg-8) ... 452s Setting up python3-et-xmlfile (1.0.1-2.1) ... 452s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 452s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 452s Setting up libthai-data (0.1.29-2) ... 452s Setting up ca-certificates-java (20240118) ... 452s No JRE found. Skipping Java certificates setup. 452s Setting up python3-lib2to3 (3.11.5-1) ... 452s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 452s Setting up python3-distutils (3.11.5-1) ... 452s python3.12: can't get files for byte-compilation 452s Setting up gnuplot-data (5.4.4+dfsg1-2build1) ... 452s Setting up libhts3:arm64 (1.18+ds-1) ... 452s Setting up python3-pysam (0.22.0+ds-1) ... 452s Setting up jarwrapper (0.79) ... 452s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 452s Setting up python3-pytest (7.4.4-1) ... 453s Setting up libcommons-parent-java (56-1) ... 453s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ... 453s Setting up python3-all (3.12.1-0ubuntu2) ... 453s Setting up samtools (1.19.2-1) ... 453s Setting up libthai0:arm64 (0.1.29-2) ... 453s Setting up python3-lxml:arm64 (5.1.0-1) ... 453s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 453s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 453s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 453s Setting up fontconfig (2.15.0-1ubuntu1) ... 455s Regenerating fonts cache... done. 455s Setting up libcommons-compress-java (1.25.0-1) ... 455s Setting up fastaq (3.17.0-6) ... 455s /usr/lib/python3/dist-packages/pyfastaq/sequences.py:37: SyntaxWarning: invalid escape sequence '\s' 455s phylip_regex = re.compile('^\s*[0-9]+\s+[0-9]+$') 455s /usr/lib/python3/dist-packages/pyfastaq/sequences.py:38: SyntaxWarning: invalid escape sequence '\s' 455s gbk_regex = re.compile('^LOCUS\s+\S') 455s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 455s Setting up libcairo2:arm64 (1.18.0-1) ... 455s Setting up python3-pymummer (0.11.0-4) ... 455s Setting up python3-openpyxl (3.1.2+dfsg-6) ... 455s Setting up libgd3:arm64 (2.3.3-9ubuntu1) ... 455s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ... 456s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 456s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 456s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 456s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 456s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 456s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 456s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 456s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 456s Setting up gnuplot-nox (5.4.4+dfsg1-2build1) ... 456s update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode 456s Setting up libguava-java (32.0.1-1) ... 456s Setting up liberror-prone-java (2.18.0-1) ... 456s Processing triggers for libc-bin (2.39-0ubuntu6) ... 456s Processing triggers for man-db (2.12.0-3) ... 457s Processing triggers for install-info (7.1-3) ... 457s Processing triggers for ca-certificates-java (20240118) ... 457s Adding debian:ACCVRAIZ1.pem 457s Adding debian:AC_RAIZ_FNMT-RCM.pem 457s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 457s Adding debian:ANF_Secure_Server_Root_CA.pem 457s Adding debian:Actalis_Authentication_Root_CA.pem 457s Adding debian:AffirmTrust_Commercial.pem 457s Adding debian:AffirmTrust_Networking.pem 457s Adding debian:AffirmTrust_Premium.pem 457s Adding debian:AffirmTrust_Premium_ECC.pem 457s Adding debian:Amazon_Root_CA_1.pem 457s Adding debian:Amazon_Root_CA_2.pem 457s Adding debian:Amazon_Root_CA_3.pem 457s Adding debian:Amazon_Root_CA_4.pem 457s Adding debian:Atos_TrustedRoot_2011.pem 457s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 457s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 457s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 457s Adding debian:BJCA_Global_Root_CA1.pem 457s Adding debian:BJCA_Global_Root_CA2.pem 457s Adding debian:Baltimore_CyberTrust_Root.pem 457s Adding debian:Buypass_Class_2_Root_CA.pem 457s Adding debian:Buypass_Class_3_Root_CA.pem 457s Adding debian:CA_Disig_Root_R2.pem 457s Adding debian:CFCA_EV_ROOT.pem 457s Adding debian:COMODO_Certification_Authority.pem 457s Adding debian:COMODO_ECC_Certification_Authority.pem 457s Adding debian:COMODO_RSA_Certification_Authority.pem 457s Adding debian:Certainly_Root_E1.pem 457s Adding debian:Certainly_Root_R1.pem 457s Adding debian:Certigna.pem 457s Adding debian:Certigna_Root_CA.pem 457s Adding debian:Certum_EC-384_CA.pem 457s Adding debian:Certum_Trusted_Network_CA.pem 457s Adding debian:Certum_Trusted_Network_CA_2.pem 457s Adding debian:Certum_Trusted_Root_CA.pem 457s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 457s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 457s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 457s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 457s Adding debian:Comodo_AAA_Services_root.pem 457s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 457s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 457s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 457s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 457s Adding debian:DigiCert_Assured_ID_Root_CA.pem 457s Adding debian:DigiCert_Assured_ID_Root_G2.pem 457s Adding debian:DigiCert_Assured_ID_Root_G3.pem 457s Adding debian:DigiCert_Global_Root_CA.pem 457s Adding debian:DigiCert_Global_Root_G2.pem 457s Adding debian:DigiCert_Global_Root_G3.pem 457s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 457s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 457s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 457s Adding debian:DigiCert_Trusted_Root_G4.pem 457s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 457s Adding debian:Entrust_Root_Certification_Authority.pem 457s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 457s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 457s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 457s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 457s Adding debian:GLOBALTRUST_2020.pem 457s Adding debian:GTS_Root_R1.pem 457s Adding debian:GTS_Root_R2.pem 457s Adding debian:GTS_Root_R3.pem 457s Adding debian:GTS_Root_R4.pem 457s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 457s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 457s Adding debian:GlobalSign_Root_CA.pem 457s Adding debian:GlobalSign_Root_CA_-_R3.pem 457s Adding debian:GlobalSign_Root_CA_-_R6.pem 457s Adding debian:GlobalSign_Root_E46.pem 457s Adding debian:GlobalSign_Root_R46.pem 457s Adding debian:Go_Daddy_Class_2_CA.pem 457s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 457s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 458s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 458s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 458s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 458s Adding debian:HiPKI_Root_CA_-_G1.pem 458s Adding debian:Hongkong_Post_Root_CA_3.pem 458s Adding debian:ISRG_Root_X1.pem 458s Adding debian:ISRG_Root_X2.pem 458s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 458s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 458s Adding debian:Izenpe.com.pem 458s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 458s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 458s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 458s Adding debian:NAVER_Global_Root_Certification_Authority.pem 458s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 458s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 458s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 458s Adding debian:QuoVadis_Root_CA_1_G3.pem 458s Adding debian:QuoVadis_Root_CA_2.pem 458s Adding debian:QuoVadis_Root_CA_2_G3.pem 458s Adding debian:QuoVadis_Root_CA_3.pem 458s Adding debian:QuoVadis_Root_CA_3_G3.pem 458s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 458s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 458s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 458s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 458s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 458s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 458s Adding debian:SZAFIR_ROOT_CA2.pem 458s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 458s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 458s Adding debian:SecureSign_RootCA11.pem 458s Adding debian:SecureTrust_CA.pem 458s Adding debian:Secure_Global_CA.pem 458s Adding debian:Security_Communication_ECC_RootCA1.pem 458s Adding debian:Security_Communication_RootCA2.pem 458s Adding debian:Security_Communication_RootCA3.pem 458s Adding debian:Security_Communication_Root_CA.pem 458s Adding debian:Starfield_Class_2_CA.pem 458s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 458s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 458s Adding debian:SwissSign_Gold_CA_-_G2.pem 458s Adding debian:SwissSign_Silver_CA_-_G2.pem 458s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 458s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 458s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 458s Adding debian:TWCA_Global_Root_CA.pem 458s Adding debian:TWCA_Root_Certification_Authority.pem 458s Adding debian:TeliaSonera_Root_CA_v1.pem 458s Adding debian:Telia_Root_CA_v2.pem 458s Adding debian:TrustAsia_Global_Root_CA_G3.pem 458s Adding debian:TrustAsia_Global_Root_CA_G4.pem 458s Adding debian:Trustwave_Global_Certification_Authority.pem 458s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 458s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 458s Adding debian:TunTrust_Root_CA.pem 458s Adding debian:UCA_Extended_Validation_Root.pem 458s Adding debian:UCA_Global_G2_Root.pem 458s Adding debian:USERTrust_ECC_Certification_Authority.pem 458s Adding debian:USERTrust_RSA_Certification_Authority.pem 458s Adding debian:XRamp_Global_CA_Root.pem 458s Adding debian:certSIGN_ROOT_CA.pem 458s Adding debian:certSIGN_Root_CA_G2.pem 458s Adding debian:e-Szigno_Root_CA_2017.pem 458s Adding debian:ePKI_Root_Certification_Authority.pem 458s Adding debian:emSign_ECC_Root_CA_-_C3.pem 458s Adding debian:emSign_ECC_Root_CA_-_G3.pem 458s Adding debian:emSign_Root_CA_-_C1.pem 458s Adding debian:emSign_Root_CA_-_G1.pem 458s Adding debian:vTrus_ECC_Root_CA.pem 458s Adding debian:vTrus_Root_CA.pem 458s done. 458s Setting up default-jre-headless (2:1.21-75+exp1) ... 458s Setting up jaligner (1.0+dfsg-11) ... 458s Setting up mhap (2.1.3+dfsg-3) ... 458s Setting up canu (2.2+dfsg-5) ... 458s Setting up circlator (1.5.6-11) ... 458s /usr/lib/python3/dist-packages/circlator/dnaa.py:18: SyntaxWarning: invalid escape sequence '\s' 458s self.uniprot_search = re.sub('\s+', '+', uniprot_search.strip()) 458s Setting up autopkgtest-satdep (0) ... 463s (Reading database ... 77388 files and directories currently installed.) 463s Removing autopkgtest-satdep (0) ... 463s autopkgtest [17:43:56]: test run-unit-test: [----------------------- 463s + pkg=circlator 463s + export LC_ALL=C.UTF-8 463s + LC_ALL=C.UTF-8 463s + '[' /tmp/autopkgtest.jArSXS/autopkgtest_tmp = '' ']' 463s + cp -a /usr/share/doc/circlator/examples/assemble_test.py /usr/share/doc/circlator/examples/assembly_test.py /usr/share/doc/circlator/examples/bamfilter_test.py /usr/share/doc/circlator/examples/clean_test.py /usr/share/doc/circlator/examples/common_test.py /usr/share/doc/circlator/examples/data.tar.xz /usr/share/doc/circlator/examples/dnaa_test.py /usr/share/doc/circlator/examples/external_progs_test.py /usr/share/doc/circlator/examples/mapping_test.py /usr/share/doc/circlator/examples/merge_test.py /usr/share/doc/circlator/examples/minimus2_test.py /usr/share/doc/circlator/examples/start_fixer_test.py /tmp/autopkgtest.jArSXS/autopkgtest_tmp 463s + cd /tmp/autopkgtest.jArSXS/autopkgtest_tmp 463s + tar xaf data.tar.xz 464s + sed -i 's/data_dir = os.path.join(modules_dir, '\''tests'\'', '\''data'\'')/data_dir = os.path.join(os.getcwd(), '\''data'\'')/' ./assemble_test.py ./assembly_test.py ./bamfilter_test.py ./clean_test.py ./common_test.py ./dnaa_test.py ./external_progs_test.py ./mapping_test.py ./merge_test.py ./minimus2_test.py ./start_fixer_test.py 464s ++ py3versions --supported 464s + for py in $(py3versions --supported 2> /dev/null) 464s + eval dpkg-architecture --is amd64 464s ++ dpkg-architecture --is amd64 464s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 464s + python3.12 -m pytest -v -k 'not (test_build_spades_kmers or test_make_spades_command)' 464s ============================= test session starts ============================== 464s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 464s cachedir: .pytest_cache 464s rootdir: /tmp/autopkgtest.jArSXS/autopkgtest_tmp 464s collecting ... collected 115 items / 2 deselected / 113 selected 464s 465s assemble_test.py::TestAssembleCanu::test_make_canu_command PASSED [ 0%] 465s assemble_test.py::TestAssembleCanu::test_rename_canu_contigs PASSED [ 1%] 465s assembly_test.py::TestAssembly::test_circular_contigs_from_canu_gfa PASSED [ 2%] 465s assembly_test.py::TestAssembly::test_circular_contigs_from_spades_after_3_6_1 PASSED [ 3%] 465s assembly_test.py::TestAssembly::test_circular_contigs_from_spades_before_3_6_1 PASSED [ 4%] 465s assembly_test.py::TestAssembly::test_circular_contigs_just_fasta PASSED [ 5%] 465s assembly_test.py::TestAssembly::test_circular_contigs_spades_post_3_6_1 PASSED [ 6%] 465s assembly_test.py::TestAssembly::test_circular_contigs_spades_pre_3_6_1 PASSED [ 7%] 465s assembly_test.py::TestAssembly::test_circular_edges_to_edge_numbers_dict PASSED [ 7%] 465s assembly_test.py::TestAssembly::test_get_contigs PASSED [ 8%] 465s assembly_test.py::TestAssembly::test_init_file_not_dir PASSED [ 9%] 465s assembly_test.py::TestAssembly::test_init_post_3_6_1_ok PASSED [ 10%] 465s assembly_test.py::TestAssembly::test_init_pre_3_6_1_ok PASSED [ 11%] 465s assembly_test.py::TestAssembly::test_init_raises_error PASSED [ 12%] 465s assembly_test.py::TestAssembly::test_spades_contigs_paths_to_dict PASSED [ 13%] 465s bamfilter_test.py::TestBamfilter::test_all_reads_from_contig PASSED [ 14%] 465s bamfilter_test.py::TestBamfilter::test_break_reads PASSED [ 15%] 465s bamfilter_test.py::TestBamfilter::test_check_contigs_to_use PASSED [ 15%] 465s bamfilter_test.py::TestBamfilter::test_exclude_region PASSED [ 16%] 465s bamfilter_test.py::TestBamfilter::test_get_all_unmapped_reads PASSED [ 17%] 465s bamfilter_test.py::TestBamfilter::test_get_contigs_to_use PASSED [ 18%] 465s bamfilter_test.py::TestBamfilter::test_get_ref_lengths PASSED [ 19%] 465s bamfilter_test.py::TestBamfilter::test_get_region_end PASSED [ 20%] 465s bamfilter_test.py::TestBamfilter::test_get_region_start PASSED [ 21%] 465s bamfilter_test.py::TestBamfilter::test_run_discard_unmapped_no_quals PASSED [ 22%] 465s bamfilter_test.py::TestBamfilter::test_run_keep_unmapped_no_quals PASSED [ 23%] 465s bamfilter_test.py::TestBamfilter::test_run_keep_unmapped_with_quals PASSED [ 23%] 465s clean_test.py::TestClean::test_clean_contigs PASSED [ 24%] 465s clean_test.py::TestClean::test_collapse_list_of_sets PASSED [ 25%] 465s clean_test.py::TestClean::test_containing_contigs PASSED [ 26%] 465s clean_test.py::TestClean::test_contains PASSED [ 27%] 465s clean_test.py::TestClean::test_expand_containing_using_transitivity PASSED [ 28%] 465s clean_test.py::TestClean::test_get_all_containing PASSED [ 29%] 465s clean_test.py::TestClean::test_get_containing_contigs PASSED [ 30%] 465s clean_test.py::TestClean::test_get_contigs_to_keep PASSED [ 30%] 465s clean_test.py::TestClean::test_get_identical_contigs PASSED [ 31%] 465s clean_test.py::TestClean::test_infinite_recursion PASSED [ 32%] 465s clean_test.py::TestClean::test_load_nucmer_hits PASSED [ 33%] 465s clean_test.py::TestClean::test_longest_contig PASSED [ 34%] 465s clean_test.py::TestClean::test_remove_identical_contigs PASSED [ 35%] 465s clean_test.py::TestClean::test_remove_small_contigs PASSED [ 36%] 465s clean_test.py::TestClean::test_write_log PASSED [ 37%] 465s common_test.py::TestCommon::test_check_files_exist PASSED [ 38%] 465s dnaa_test.py::TestDnaa::test_append_stop_to_seq PASSED [ 38%] 465s dnaa_test.py::TestDnaa::test_check_sequence PASSED [ 39%] 465s dnaa_test.py::TestDnaa::test_get_uniprot_url PASSED [ 40%] 465s dnaa_test.py::TestDnaa::test_header_matches_regex PASSED [ 41%] 465s dnaa_test.py::TestDnaa::test_header_to_genus_species PASSED [ 42%] 465s dnaa_test.py::TestDnaa::test_reverse_translate PASSED [ 43%] 465s external_progs_test.py::TestExternalProgs::test_bwa_version PASSED [ 44%] 465s external_progs_test.py::TestExternalProgs::test_canu_version PASSED [ 45%] 465s external_progs_test.py::TestExternalProgs::test_nucmer_version PASSED [ 46%] 465s external_progs_test.py::TestExternalProgs::test_prodigal_version PASSED [ 46%] 465s external_progs_test.py::TestExternalProgs::test_samtools_original_version PASSED [ 47%] 465s external_progs_test.py::TestExternalProgs::test_samtools_version PASSED [ 48%] 465s external_progs_test.py::TestExternalProgs::test_spades_version PASSED [ 49%] 465s mapping_test.py::TestMapping::test_aligned_read_to_read PASSED [ 50%] 465s mapping_test.py::TestMapping::test_bwa_index PASSED [ 51%] 465s mapping_test.py::TestMapping::test_bwa_index_clean PASSED [ 52%] 465s mapping_test.py::TestMapping::test_bwa_mem PASSED [ 53%] 465s merge_test.py::TestMerge::test_can_circularise PASSED [ 53%] 465s merge_test.py::TestMerge::test_contigs_dict_to_file PASSED [ 54%] 465s merge_test.py::TestMerge::test_filter_bridging_contigs PASSED [ 55%] 465s merge_test.py::TestMerge::test_get_hit_nearest_ref_end PASSED [ 56%] 465s merge_test.py::TestMerge::test_get_hit_nearest_ref_start PASSED [ 57%] 465s merge_test.py::TestMerge::test_get_longest_hit_at_qry_end PASSED [ 58%] 465s merge_test.py::TestMerge::test_get_longest_hit_at_qry_start PASSED [ 59%] 465s merge_test.py::TestMerge::test_get_longest_hit_at_ref_end PASSED [ 60%] 465s merge_test.py::TestMerge::test_get_longest_hit_at_ref_start PASSED [ 61%] 465s merge_test.py::TestMerge::test_get_longest_hit_by_ref_length PASSED [ 61%] 465s merge_test.py::TestMerge::test_get_possible_circular_ref_contigs PASSED [ 62%] 465s merge_test.py::TestMerge::test_get_possible_circular_ref_contigs_same_best_hits PASSED [ 63%] 465s merge_test.py::TestMerge::test_get_possible_query_bridging_contigs PASSED [ 64%] 465s merge_test.py::TestMerge::test_get_spades_circular_nodes PASSED [ 65%] 465s merge_test.py::TestMerge::test_has_qry_hit_longer_than PASSED [ 66%] 465s merge_test.py::TestMerge::test_hits_hashed_by_query PASSED [ 67%] 465s merge_test.py::TestMerge::test_hits_have_same_query PASSED [ 68%] 465s merge_test.py::TestMerge::test_hits_have_same_reference PASSED [ 69%] 465s merge_test.py::TestMerge::test_index_fasta PASSED [ 69%] 465s merge_test.py::TestMerge::test_is_at_qry_end PASSED [ 70%] 465s merge_test.py::TestMerge::test_is_at_qry_start PASSED [ 71%] 465s merge_test.py::TestMerge::test_is_at_ref_end PASSED [ 72%] 465s merge_test.py::TestMerge::test_is_at_ref_start PASSED [ 73%] 465s merge_test.py::TestMerge::test_load_nucmer_hits PASSED [ 74%] 465s merge_test.py::TestMerge::test_make_circularised_contig_1 PASSED [ 75%] 465s merge_test.py::TestMerge::test_make_circularised_contig_2 PASSED [ 76%] 465s merge_test.py::TestMerge::test_make_new_contig_from_nucmer_and_spades_not_hit PASSED [ 76%] 465s merge_test.py::TestMerge::test_make_new_contig_from_nucmer_and_spades_with_hit PASSED [ 77%] 465s merge_test.py::TestMerge::test_merge_bridged_contig_pair1 PASSED [ 78%] 465s merge_test.py::TestMerge::test_merge_bridged_contig_pair2 PASSED [ 79%] 465s merge_test.py::TestMerge::test_merge_bridged_contig_pair3 PASSED [ 80%] 465s merge_test.py::TestMerge::test_merge_bridged_contig_pair4 PASSED [ 81%] 465s merge_test.py::TestMerge::test_min_qry_hit_length PASSED [ 82%] 465s merge_test.py::TestMerge::test_orientation_ok_to_bridge_contigs PASSED [ 83%] 465s merge_test.py::TestMerge::test_remove_keys_from_dict_with_nonunique_values PASSED [ 84%] 465s merge_test.py::TestMerge::test_write_act_files PASSED [ 84%] 465s minimus2_test.py::TestMinimus2::test_run_initial_merge SKIPPED (Amos...) [ 85%] 465s minimus2_test.py::TestMinimus2::test_run_minimus2 SKIPPED (Amos is n...) [ 86%] 465s minimus2_test.py::TestMinimus2::test_run_minimus2_on_each_contig SKIPPED [ 87%] 465s minimus2_test.py::TestMinimus2::test_run_minimus2_on_one_contig_will_not_work SKIPPED [ 88%] 465s minimus2_test.py::TestMinimus2::test_run_minimus2_on_one_contig_will_work SKIPPED [ 89%] 465s minimus2_test.py::TestMinimus2::test_write_split_contig SKIPPED (Amo...) [ 90%] 465s start_fixer_test.py::TestStartFixer::test_find_circular_using_prodigal PASSED [ 91%] 465s start_fixer_test.py::TestStartFixer::test_find_circular_using_promer PASSED [ 92%] 465s start_fixer_test.py::TestStartFixer::test_init PASSED [ 92%] 465s start_fixer_test.py::TestStartFixer::test_max_length_from_fasta_file PASSED [ 93%] 465s start_fixer_test.py::TestStartFixer::test_rearrange_contigs PASSED [ 94%] 465s start_fixer_test.py::TestStartFixer::test_rename_contigs PASSED [ 95%] 465s start_fixer_test.py::TestStartFixer::test_run_bit_of_everything PASSED [ 96%] 465s start_fixer_test.py::TestStartFixer::test_run_ignore_all PASSED [ 97%] 465s start_fixer_test.py::TestStartFixer::test_run_none_for_prodigal PASSED [ 98%] 465s start_fixer_test.py::TestStartFixer::test_write_fasta_plus_circularized_ends PASSED [ 99%] 465s start_fixer_test.py::TestStartFixer::test_write_renamed_contigs PASSED [100%] 465s 465s =============================== warnings summary =============================== 465s ../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:1 465s /usr/lib/python3/dist-packages/pyfastaq/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 465s from pkg_resources import get_distribution 465s 465s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 465s =========== 107 passed, 6 skipped, 2 deselected, 1 warning in 1.47s ============ 466s autopkgtest [17:43:59]: test run-unit-test: -----------------------] 466s run-unit-test PASS 466s autopkgtest [17:43:59]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 466s autopkgtest [17:43:59]: @@@@@@@@@@@@@@@@@@@@ summary 466s run-unit-test PASS