0s autopkgtest [01:36:34]: starting date and time: 2024-03-20 01:36:34+0000 0s autopkgtest [01:36:34]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [01:36:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.a57pyl6q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:protobuf,src:cmake --apt-upgrade biomaj3-process --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=protobuf/3.21.12-8.2 cmake/3.28.3-1build5' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-12.secgroup --name adt-noble-arm64-biomaj3-process-20240320-013634-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 210s autopkgtest [01:40:04]: testbed dpkg architecture: arm64 210s autopkgtest [01:40:04]: testbed apt version: 2.7.12 210s autopkgtest [01:40:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 211s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 211s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [492 kB] 212s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3803 kB] 212s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB] 212s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 212s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [665 kB] 212s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 212s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [41.7 kB] 212s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 212s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4163 kB] 212s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 212s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [56.7 kB] 212s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 217s Fetched 9409 kB in 3s (3632 kB/s) 218s Reading package lists... 221s Reading package lists... 222s Building dependency tree... 222s Reading state information... 223s Calculating upgrade... 223s The following packages will be upgraded: 223s ubuntu-minimal ubuntu-standard 223s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 223s Need to get 21.5 kB of archives. 223s After this operation, 0 B of additional disk space will be used. 223s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536build1 [10.7 kB] 224s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536build1 [10.7 kB] 224s Fetched 21.5 kB in 0s (99.3 kB/s) 224s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 224s Preparing to unpack .../ubuntu-minimal_1.536build1_arm64.deb ... 224s Unpacking ubuntu-minimal (1.536build1) over (1.536) ... 224s Preparing to unpack .../ubuntu-standard_1.536build1_arm64.deb ... 224s Unpacking ubuntu-standard (1.536build1) over (1.536) ... 224s Setting up ubuntu-minimal (1.536build1) ... 224s Setting up ubuntu-standard (1.536build1) ... 225s Reading package lists... 225s Building dependency tree... 225s Reading state information... 226s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 227s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 227s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 227s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 227s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 230s Reading package lists... 230s Reading package lists... 231s Building dependency tree... 231s Reading state information... 232s Calculating upgrade... 233s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 233s Reading package lists... 233s Building dependency tree... 233s Reading state information... 234s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 237s autopkgtest [01:40:31]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 238s autopkgtest [01:40:32]: @@@@@@@@@@@@@@@@@@@@ apt-source biomaj3-process 240s Get:1 http://ftpmaster.internal/ubuntu noble/universe biomaj3-process 3.0.19-1 (dsc) [2375 B] 240s Get:2 http://ftpmaster.internal/ubuntu noble/universe biomaj3-process 3.0.19-1 (tar) [23.6 kB] 240s Get:3 http://ftpmaster.internal/ubuntu noble/universe biomaj3-process 3.0.19-1 (diff) [13.5 kB] 240s gpgv: Signature made Mon Aug 29 12:49:30 2022 UTC 240s gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 240s gpgv: issuer "osallou@debian.org" 240s gpgv: Can't check signature: No public key 240s dpkg-source: warning: cannot verify inline signature for ./biomaj3-process_3.0.19-1.dsc: no acceptable signature found 240s autopkgtest [01:40:34]: testing package biomaj3-process version 3.0.19-1 240s autopkgtest [01:40:34]: build not needed 242s autopkgtest [01:40:36]: test autodep8-python3: preparing testbed 244s Reading package lists... 244s Building dependency tree... 244s Reading state information... 245s Starting pkgProblemResolver with broken count: 0 245s Starting 2 pkgProblemResolver with broken count: 0 245s Done 246s The following additional packages will be installed: 246s libjs-jquery libprotobuf32t64 python3-all python3-async-timeout 246s python3-biomaj3-core python3-biomaj3-process python3-biomaj3-zipkin 246s python3-click python3-colorama python3-consul python3-decorator 246s python3-deprecated python3-elasticsearch python3-flask python3-itsdangerous 246s python3-packaging python3-pika python3-ply python3-prometheus-client 246s python3-protobuf python3-py-zipkin python3-redis python3-thriftpy 246s python3-werkzeug python3-wrapt 246s Suggested packages: 246s python3-gunicorn redis-server python3-tornado python3-twisted 246s python-elasticsearch-doc python3-dotenv python-flask-doc python-pika-doc 246s python-ply-doc python3-hiredis ipython3 python-werkzeug-doc python3-lxml 246s python3-watchdog 246s Recommended packages: 246s javascript-common python3-asgiref python3-simplejson python3-pyinotify 246s The following NEW packages will be installed: 246s autopkgtest-satdep libjs-jquery libprotobuf32t64 python3-all 246s python3-async-timeout python3-biomaj3-core python3-biomaj3-process 246s python3-biomaj3-zipkin python3-click python3-colorama python3-consul 246s python3-decorator python3-deprecated python3-elasticsearch python3-flask 246s python3-itsdangerous python3-packaging python3-pika python3-ply 246s python3-prometheus-client python3-protobuf python3-py-zipkin python3-redis 246s python3-thriftpy python3-werkzeug python3-wrapt 246s 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. 246s Need to get 2649 kB/2649 kB of archives. 246s After this operation, 13.7 MB of additional disk space will be used. 246s Get:1 /tmp/autopkgtest.8zkVGf/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 246s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 247s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libprotobuf32t64 arm64 3.21.12-8.2 [859 kB] 247s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3-all arm64 3.12.1-0ubuntu2 [906 B] 247s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-async-timeout all 4.0.3-1 [6412 B] 247s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-elasticsearch all 7.17.6-1 [110 kB] 247s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biomaj3-core all 3.0.28-2 [24.4 kB] 247s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 python3-ply all 3.11-6 [46.5 kB] 247s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-thriftpy arm64 0.3.9+ds1-3 [191 kB] 247s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-py-zipkin all 0.15.0-2 [27.3 kB] 247s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biomaj3-zipkin all 0.2.2-3 [15.3 kB] 247s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-consul all 0.7.1-2 [21.6 kB] 247s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 247s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 python3-click all 8.1.6-1 [79.0 kB] 247s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 python3-itsdangerous all 2.1.2-4 [14.6 kB] 247s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 python3-werkzeug all 3.0.1-3 [169 kB] 247s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 python3-flask all 2.2.5-1ubuntu1 [85.7 kB] 247s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pika all 1.2.0-1 [109 kB] 247s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 247s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 python3-prometheus-client all 0.19.0+ds1-1 [41.7 kB] 247s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-protobuf arm64 3.21.12-8.2 [196 kB] 247s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 python3-wrapt arm64 1.15.0-2build1 [39.5 kB] 247s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-deprecated all 1.2.14-1 [10.5 kB] 247s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 247s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-redis all 4.3.4-3 [166 kB] 247s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-biomaj3-process all 3.0.19-1 [25.7 kB] 248s Fetched 2649 kB in 1s (3265 kB/s) 248s Selecting previously unselected package libjs-jquery. 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 248s Preparing to unpack .../00-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 248s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 248s Selecting previously unselected package libprotobuf32t64:arm64. 248s Preparing to unpack .../01-libprotobuf32t64_3.21.12-8.2_arm64.deb ... 248s Unpacking libprotobuf32t64:arm64 (3.21.12-8.2) ... 248s Selecting previously unselected package python3-all. 248s Preparing to unpack .../02-python3-all_3.12.1-0ubuntu2_arm64.deb ... 248s Unpacking python3-all (3.12.1-0ubuntu2) ... 248s Selecting previously unselected package python3-async-timeout. 248s Preparing to unpack .../03-python3-async-timeout_4.0.3-1_all.deb ... 248s Unpacking python3-async-timeout (4.0.3-1) ... 248s Selecting previously unselected package python3-elasticsearch. 248s Preparing to unpack .../04-python3-elasticsearch_7.17.6-1_all.deb ... 248s Unpacking python3-elasticsearch (7.17.6-1) ... 248s Selecting previously unselected package python3-biomaj3-core. 248s Preparing to unpack .../05-python3-biomaj3-core_3.0.28-2_all.deb ... 248s Unpacking python3-biomaj3-core (3.0.28-2) ... 248s Selecting previously unselected package python3-ply. 248s Preparing to unpack .../06-python3-ply_3.11-6_all.deb ... 248s Unpacking python3-ply (3.11-6) ... 248s Selecting previously unselected package python3-thriftpy. 248s Preparing to unpack .../07-python3-thriftpy_0.3.9+ds1-3_arm64.deb ... 248s Unpacking python3-thriftpy (0.3.9+ds1-3) ... 248s Selecting previously unselected package python3-py-zipkin. 248s Preparing to unpack .../08-python3-py-zipkin_0.15.0-2_all.deb ... 248s Unpacking python3-py-zipkin (0.15.0-2) ... 248s Selecting previously unselected package python3-biomaj3-zipkin. 248s Preparing to unpack .../09-python3-biomaj3-zipkin_0.2.2-3_all.deb ... 248s Unpacking python3-biomaj3-zipkin (0.2.2-3) ... 248s Selecting previously unselected package python3-consul. 248s Preparing to unpack .../10-python3-consul_0.7.1-2_all.deb ... 248s Unpacking python3-consul (0.7.1-2) ... 248s Selecting previously unselected package python3-colorama. 248s Preparing to unpack .../11-python3-colorama_0.4.6-4_all.deb ... 248s Unpacking python3-colorama (0.4.6-4) ... 249s Selecting previously unselected package python3-click. 249s Preparing to unpack .../12-python3-click_8.1.6-1_all.deb ... 249s Unpacking python3-click (8.1.6-1) ... 249s Selecting previously unselected package python3-itsdangerous. 249s Preparing to unpack .../13-python3-itsdangerous_2.1.2-4_all.deb ... 249s Unpacking python3-itsdangerous (2.1.2-4) ... 249s Selecting previously unselected package python3-werkzeug. 249s Preparing to unpack .../14-python3-werkzeug_3.0.1-3_all.deb ... 249s Unpacking python3-werkzeug (3.0.1-3) ... 249s Selecting previously unselected package python3-flask. 249s Preparing to unpack .../15-python3-flask_2.2.5-1ubuntu1_all.deb ... 249s Unpacking python3-flask (2.2.5-1ubuntu1) ... 249s Selecting previously unselected package python3-pika. 249s Preparing to unpack .../16-python3-pika_1.2.0-1_all.deb ... 249s Unpacking python3-pika (1.2.0-1) ... 249s Selecting previously unselected package python3-decorator. 249s Preparing to unpack .../17-python3-decorator_5.1.1-5_all.deb ... 249s Unpacking python3-decorator (5.1.1-5) ... 249s Selecting previously unselected package python3-prometheus-client. 249s Preparing to unpack .../18-python3-prometheus-client_0.19.0+ds1-1_all.deb ... 249s Unpacking python3-prometheus-client (0.19.0+ds1-1) ... 249s Selecting previously unselected package python3-protobuf. 249s Preparing to unpack .../19-python3-protobuf_3.21.12-8.2_arm64.deb ... 249s Unpacking python3-protobuf (3.21.12-8.2) ... 249s Selecting previously unselected package python3-wrapt. 249s Preparing to unpack .../20-python3-wrapt_1.15.0-2build1_arm64.deb ... 249s Unpacking python3-wrapt (1.15.0-2build1) ... 249s Selecting previously unselected package python3-deprecated. 249s Preparing to unpack .../21-python3-deprecated_1.2.14-1_all.deb ... 249s Unpacking python3-deprecated (1.2.14-1) ... 249s Selecting previously unselected package python3-packaging. 249s Preparing to unpack .../22-python3-packaging_23.2-1_all.deb ... 249s Unpacking python3-packaging (23.2-1) ... 249s Selecting previously unselected package python3-redis. 249s Preparing to unpack .../23-python3-redis_4.3.4-3_all.deb ... 249s Unpacking python3-redis (4.3.4-3) ... 249s Selecting previously unselected package python3-biomaj3-process. 249s Preparing to unpack .../24-python3-biomaj3-process_3.0.19-1_all.deb ... 249s Unpacking python3-biomaj3-process (3.0.19-1) ... 249s Selecting previously unselected package autopkgtest-satdep. 249s Preparing to unpack .../25-1-autopkgtest-satdep.deb ... 249s Unpacking autopkgtest-satdep (0) ... 249s Setting up python3-elasticsearch (7.17.6-1) ... 250s Setting up libprotobuf32t64:arm64 (3.21.12-8.2) ... 250s Setting up python3-colorama (0.4.6-4) ... 250s Setting up python3-pika (1.2.0-1) ... 251s Setting up python3-ply (3.11-6) ... 251s Setting up python3-itsdangerous (2.1.2-4) ... 251s Setting up python3-all (3.12.1-0ubuntu2) ... 251s Setting up python3-click (8.1.6-1) ... 252s Setting up python3-async-timeout (4.0.3-1) ... 252s Setting up python3-decorator (5.1.1-5) ... 252s Setting up python3-packaging (23.2-1) ... 252s Setting up python3-biomaj3-core (3.0.28-2) ... 253s Setting up python3-thriftpy (0.3.9+ds1-3) ... 253s Setting up python3-wrapt (1.15.0-2build1) ... 253s Setting up python3-consul (0.7.1-2) ... 254s Setting up python3-py-zipkin (0.15.0-2) ... 254s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 254s Setting up python3-protobuf (3.21.12-8.2) ... 254s Setting up python3-deprecated (1.2.14-1) ... 255s Setting up python3-biomaj3-zipkin (0.2.2-3) ... 255s Setting up python3-prometheus-client (0.19.0+ds1-1) ... 255s Setting up python3-werkzeug (3.0.1-3) ... 256s Setting up python3-redis (4.3.4-3) ... 256s Setting up python3-flask (2.2.5-1ubuntu1) ... 257s Setting up python3-biomaj3-process (3.0.19-1) ... 257s Setting up autopkgtest-satdep (0) ... 257s Processing triggers for man-db (2.12.0-3) ... 258s Processing triggers for libc-bin (2.39-0ubuntu2) ... 263s (Reading database ... 76784 files and directories currently installed.) 263s Removing autopkgtest-satdep (0) ... 264s autopkgtest [01:40:58]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import biomaj_process; print(biomaj_process)" ; done 264s autopkgtest [01:40:58]: test autodep8-python3: [----------------------- 264s Testing with python3.12: 264s 264s autopkgtest [01:40:58]: test autodep8-python3: -----------------------] 265s autopkgtest [01:40:59]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 265s autodep8-python3 PASS (superficial) 265s autopkgtest [01:40:59]: @@@@@@@@@@@@@@@@@@@@ summary 265s autodep8-python3 PASS (superficial) 284s Creating nova instance adt-noble-arm64-biomaj3-process-20240320-013634-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240319.img (UUID bd25b89b-8264-4402-95d9-d9c88f21f275)...