0s autopkgtest [07:46:48]: starting date and time: 2024-03-21 07:46:48+0000
  0s autopkgtest [07:46:48]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [07:46:48]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5kslw7ve/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:openjdk-lts,src:alsa-lib,src:cups,src:gnutls28,src:libpng1.6,src:nettle,src:wp2latex --apt-upgrade beagle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openjdk-lts/11.0.23~7ea-1ubuntu1 alsa-lib/1.2.11-1build1 cups/2.4.7-1.2ubuntu1 gnutls28/3.8.3-1.1ubuntu2 libpng1.6/1.6.43-3 nettle/3.9.1-2.2 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-11.secgroup --name adt-noble-arm64-beagle-20240321-074648-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
122s autopkgtest [07:48:50]: testbed dpkg architecture: arm64
123s autopkgtest [07:48:51]: testbed apt version: 2.7.12
123s autopkgtest [07:48:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup
123s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
124s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
124s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3769 kB]
125s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
125s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [492 kB]
125s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [683 kB]
125s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
125s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [41.7 kB]
125s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
125s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4177 kB]
125s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
125s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [67.4 kB]
125s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
127s Fetched 9418 kB in 2s (3941 kB/s)
127s Reading package lists...
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Calculating upgrade...
130s The following packages will be upgraded:
130s   debianutils linux-firmware ubuntu-minimal ubuntu-standard
131s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s Need to get 476 MB of archives.
131s After this operation, 5724 kB of additional disk space will be used.
131s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 debianutils arm64 5.17 [90.1 kB]
131s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536build1 [10.7 kB]
131s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536build1 [10.7 kB]
131s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 linux-firmware arm64 20240318.git3b128b60-0ubuntu1 [475 MB]
175s Fetched 476 MB in 44s (10.7 MB/s)
175s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75850 files and directories currently installed.)
175s Preparing to unpack .../debianutils_5.17_arm64.deb ...
175s Unpacking debianutils (5.17) over (5.16) ...
175s Setting up debianutils (5.17) ...
175s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75850 files and directories currently installed.)
175s Preparing to unpack .../ubuntu-minimal_1.536build1_arm64.deb ...
175s Unpacking ubuntu-minimal (1.536build1) over (1.536) ...
175s Preparing to unpack .../ubuntu-standard_1.536build1_arm64.deb ...
175s Unpacking ubuntu-standard (1.536build1) over (1.536) ...
175s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_arm64.deb ...
175s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ...
178s Setting up ubuntu-minimal (1.536build1) ...
179s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ...
179s Setting up ubuntu-standard (1.536build1) ...
179s Processing triggers for man-db (2.12.0-3) ...
179s Processing triggers for initramfs-tools (0.142ubuntu20) ...
179s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic
179s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
187s System running in EFI mode, skipping.
187s Reading package lists...
187s Building dependency tree...
187s Reading state information...
188s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
188s sh: Attempting to set up Debian/Ubuntu apt sources automatically
188s sh: Distribution appears to be Ubuntu
189s Reading package lists...
189s Building dependency tree...
189s Reading state information...
190s eatmydata is already the newest version (131-1).
190s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
190s Reading package lists...
190s Building dependency tree...
190s Reading state information...
190s dbus is already the newest version (1.14.10-4ubuntu1).
190s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
190s Reading package lists...
190s Building dependency tree...
190s Reading state information...
191s rng-tools-debian is already the newest version (2.4).
191s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
191s Reading package lists...
191s Building dependency tree...
191s Reading state information...
191s The following packages will be REMOVED:
191s   cloud-init* python3-configobj* python3-debconf*
192s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
192s After this operation, 3252 kB disk space will be freed.
192s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75912 files and directories currently installed.)
192s Removing cloud-init (24.1.1-0ubuntu1) ...
192s Removing python3-configobj (5.0.8-3) ...
192s Removing python3-debconf (1.5.86) ...
192s Processing triggers for man-db (2.12.0-3) ...
193s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75523 files and directories currently installed.)
193s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
193s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
193s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
193s invoke-rc.d: policy-rc.d denied execution of try-restart.
193s Reading package lists...
193s Building dependency tree...
193s Reading state information...
194s linux-generic is already the newest version (6.8.0-11.11+1).
194s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
194s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
194s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
195s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
196s Reading package lists...
196s Reading package lists...
196s Building dependency tree...
196s Reading state information...
197s Calculating upgrade...
197s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
197s Reading package lists...
197s Building dependency tree...
197s Reading state information...
197s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
198s autopkgtest [07:50:06]: rebooting testbed after setup commands that affected boot
344s autopkgtest [07:52:32]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
347s autopkgtest [07:52:35]: @@@@@@@@@@@@@@@@@@@@ apt-source beagle
349s Get:1 http://ftpmaster.internal/ubuntu noble/universe beagle 220722-1 (dsc) [2088 B]
349s Get:2 http://ftpmaster.internal/ubuntu noble/universe beagle 220722-1 (tar) [140 kB]
349s Get:3 http://ftpmaster.internal/ubuntu noble/universe beagle 220722-1 (diff) [1356 kB]
349s gpgv: Signature made Thu Jul 28 09:09:27 2022 UTC
349s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
349s gpgv:                issuer "tille@debian.org"
349s gpgv: Can't check signature: No public key
349s dpkg-source: warning: cannot verify inline signature for ./beagle_220722-1.dsc: no acceptable signature found
349s autopkgtest [07:52:37]: testing package beagle version 220722-1
359s autopkgtest [07:52:47]: build not needed
371s autopkgtest [07:52:59]: test run-sample-analysis: preparing testbed
379s Reading package lists...
379s Building dependency tree...
379s Reading state information...
379s Starting pkgProblemResolver with broken count: 0
379s Starting 2 pkgProblemResolver with broken count: 0
380s Done
380s The following additional packages will be installed:
380s   adwaita-icon-theme at-spi2-common beagle beagle-doc ca-certificates-java
380s   default-jre default-jre-headless fontconfig fontconfig-config
380s   fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme
380s   humanity-icon-theme java-common libapache-pom-java libasound2
380s   libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data
380s   libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java
380s   libcommons-logging-java libcommons-parent-java libcups2 libdatrie1
380s   libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1
380s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri
380s   libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0
380s   libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 libjpeg-turbo8
380s   libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 libmbedtls14
380s   libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni
380s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1
380s   libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java libsnappy-jni
380s   libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1
380s   libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0
380s   libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1
380s   libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
380s   libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre
380s   openjdk-21-jre-headless ubuntu-mono x11-common
380s Suggested packages:
380s   libasound2-plugins alsa-utils libasm-java libxz-java
380s   libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java
380s   cups-common gvfs picard-tools liblcms2-utils libngs-java-doc pcscd rhino
380s   libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho
380s   fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic
380s Recommended packages:
380s   librsvg2-common alsa-ucm-conf alsa-topology-conf libgdk-pixbuf2.0-bin
380s   libgl1-amber-dri libgail-common libgtk2.0-bin mesa-vulkan-drivers
380s   | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra
380s The following NEW packages will be installed:
380s   adwaita-icon-theme at-spi2-common autopkgtest-satdep beagle beagle-doc
380s   ca-certificates-java default-jre default-jre-headless fontconfig
380s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache
380s   hicolor-icon-theme humanity-icon-theme java-common libapache-pom-java
380s   libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data
380s   libavahi-common3 libcairo2 libcommons-compress-java libcommons-jexl2-java
380s   libcommons-logging-java libcommons-parent-java libcups2 libdatrie1
380s   libdeflate0 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1
380s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri
380s   libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0
380s   libgtk2.0-common libharfbuzz0b libhtsjdk-java libjbig0 libjpeg-turbo8
380s   libjpeg8 liblcms2-2 liblerc4 libllvm17 libmbedcrypto7 libmbedtls14
380s   libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni
380s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1
380s   libpixman-1-0 librhino-java libsharpyuv0 libsnappy-java libsnappy-jni
380s   libsnappy1v5 libthai-data libthai0 libtiff6 libvulkan1 libwebp7 libx11-xcb1
380s   libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0
380s   libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcomposite1
380s   libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
380s   libxrender1 libxshmfence1 libxtst6 libxxf86vm1 ncbi-vdb-data openjdk-21-jre
380s   openjdk-21-jre-headless ubuntu-mono x11-common
380s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded.
380s Need to get 98.1 MB/98.1 MB of archives.
380s After this operation, 447 MB of additional disk space will be used.
380s Get:1 /tmp/autopkgtest.nP5O8C/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B]
380s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B]
380s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
380s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
380s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
380s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
380s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
380s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
380s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
380s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
380s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB]
380s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB]
380s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B]
380s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB]
381s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB]
381s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB]
381s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B]
381s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB]
381s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B]
381s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB]
381s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB]
381s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB]
381s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB]
381s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB]
381s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
381s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
381s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
381s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
381s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB]
381s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB]
381s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
381s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
381s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB]
381s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB]
383s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B]
383s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB]
383s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB]
383s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
383s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
383s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
383s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
383s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
383s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
383s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
383s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
383s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
383s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
383s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
383s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
383s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B]
383s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB]
383s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB]
383s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B]
383s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB]
383s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B]
383s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB]
383s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB]
383s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB]
383s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB]
383s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B]
383s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B]
383s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B]
383s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB]
383s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B]
383s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB]
383s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B]
383s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB]
383s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B]
383s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB]
383s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB]
383s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB]
383s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB]
383s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB]
383s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB]
384s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB]
384s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB]
384s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB]
384s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB]
384s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB]
384s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
384s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB]
384s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB]
384s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B]
384s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libapache-pom-java all 29-2 [5284 B]
384s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-parent-java all 56-1 [10.7 kB]
384s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-compress-java all 1.25.0-1 [612 kB]
384s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB]
384s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB]
384s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libmjson-java all 1.4.0-3 [60.4 kB]
384s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB]
385s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB]
385s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB]
385s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [65.8 kB]
385s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [1130 kB]
385s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6ubuntu1 [146 kB]
385s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-jni arm64 3.0.3+dfsg-6ubuntu1 [4832 B]
385s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libngs-java arm64 3.0.3+dfsg-6ubuntu1 [91.8 kB]
385s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 librhino-java all 1.7.14-2.1 [1330 kB]
385s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB]
385s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-jni arm64 1.1.10.5-1 [6542 B]
385s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libsnappy-java all 1.1.10.5-1 [83.6 kB]
385s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtsjdk-java all 4.1.0+dfsg-1 [1821 kB]
385s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 beagle all 220722-1 [356 kB]
385s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 beagle-doc all 220722-1 [1655 kB]
386s Fetched 98.1 MB in 5s (18.4 MB/s)
386s Selecting previously unselected package libgdk-pixbuf2.0-common.
386s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75468 files and directories currently installed.)
386s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ...
386s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
386s Selecting previously unselected package libjpeg-turbo8:arm64.
386s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
386s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
386s Selecting previously unselected package libjpeg8:arm64.
386s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ...
386s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
386s Selecting previously unselected package libdeflate0:arm64.
386s Preparing to unpack .../003-libdeflate0_1.19-1_arm64.deb ...
386s Unpacking libdeflate0:arm64 (1.19-1) ...
386s Selecting previously unselected package libjbig0:arm64.
386s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
386s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
386s Selecting previously unselected package liblerc4:arm64.
386s Preparing to unpack .../005-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
386s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
386s Selecting previously unselected package libsharpyuv0:arm64.
386s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_arm64.deb ...
386s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
386s Selecting previously unselected package libwebp7:arm64.
386s Preparing to unpack .../007-libwebp7_1.3.2-0.4_arm64.deb ...
386s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
386s Selecting previously unselected package libtiff6:arm64.
386s Preparing to unpack .../008-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
386s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
386s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64.
386s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ...
386s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ...
386s Selecting previously unselected package gtk-update-icon-cache.
386s Preparing to unpack .../010-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ...
386s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ...
386s Selecting previously unselected package hicolor-icon-theme.
386s Preparing to unpack .../011-hicolor-icon-theme_0.17-2_all.deb ...
386s Unpacking hicolor-icon-theme (0.17-2) ...
386s Selecting previously unselected package humanity-icon-theme.
386s Preparing to unpack .../012-humanity-icon-theme_0.6.16_all.deb ...
386s Unpacking humanity-icon-theme (0.6.16) ...
386s Selecting previously unselected package ubuntu-mono.
386s Preparing to unpack .../013-ubuntu-mono_24.04-0ubuntu1_all.deb ...
386s Unpacking ubuntu-mono (24.04-0ubuntu1) ...
387s Selecting previously unselected package adwaita-icon-theme.
387s Preparing to unpack .../014-adwaita-icon-theme_46~rc-1_all.deb ...
387s Unpacking adwaita-icon-theme (46~rc-1) ...
387s Selecting previously unselected package at-spi2-common.
387s Preparing to unpack .../015-at-spi2-common_2.50.0-1_all.deb ...
387s Unpacking at-spi2-common (2.50.0-1) ...
387s Selecting previously unselected package ca-certificates-java.
387s Preparing to unpack .../016-ca-certificates-java_20240118_all.deb ...
387s Unpacking ca-certificates-java (20240118) ...
387s Selecting previously unselected package java-common.
387s Preparing to unpack .../017-java-common_0.75+exp1_all.deb ...
387s Unpacking java-common (0.75+exp1) ...
387s Selecting previously unselected package libavahi-common-data:arm64.
387s Preparing to unpack .../018-libavahi-common-data_0.8-13ubuntu2_arm64.deb ...
387s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ...
387s Selecting previously unselected package libavahi-common3:arm64.
387s Preparing to unpack .../019-libavahi-common3_0.8-13ubuntu2_arm64.deb ...
387s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ...
387s Selecting previously unselected package libavahi-client3:arm64.
387s Preparing to unpack .../020-libavahi-client3_0.8-13ubuntu2_arm64.deb ...
387s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ...
387s Selecting previously unselected package libcups2:arm64.
387s Preparing to unpack .../021-libcups2_2.4.6-0ubuntu3_arm64.deb ...
387s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ...
387s Selecting previously unselected package liblcms2-2:arm64.
387s Preparing to unpack .../022-liblcms2-2_2.14-2_arm64.deb ...
387s Unpacking liblcms2-2:arm64 (2.14-2) ...
387s Selecting previously unselected package fonts-dejavu-mono.
387s Preparing to unpack .../023-fonts-dejavu-mono_2.37-8_all.deb ...
387s Unpacking fonts-dejavu-mono (2.37-8) ...
387s Selecting previously unselected package fonts-dejavu-core.
387s Preparing to unpack .../024-fonts-dejavu-core_2.37-8_all.deb ...
387s Unpacking fonts-dejavu-core (2.37-8) ...
387s Selecting previously unselected package fontconfig-config.
387s Preparing to unpack .../025-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
387s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
387s Selecting previously unselected package libfontconfig1:arm64.
387s Preparing to unpack .../026-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
387s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
387s Selecting previously unselected package libasound2-data.
387s Preparing to unpack .../027-libasound2-data_1.2.10-3build1_all.deb ...
387s Unpacking libasound2-data (1.2.10-3build1) ...
387s Selecting previously unselected package libasound2:arm64.
387s Preparing to unpack .../028-libasound2_1.2.10-3build1_arm64.deb ...
387s Unpacking libasound2:arm64 (1.2.10-3build1) ...
387s Selecting previously unselected package libgraphite2-3:arm64.
387s Preparing to unpack .../029-libgraphite2-3_1.3.14-2_arm64.deb ...
387s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
387s Selecting previously unselected package libharfbuzz0b:arm64.
387s Preparing to unpack .../030-libharfbuzz0b_8.3.0-2_arm64.deb ...
387s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
387s Selecting previously unselected package libpcsclite1:arm64.
387s Preparing to unpack .../031-libpcsclite1_2.0.0-1_arm64.deb ...
387s Unpacking libpcsclite1:arm64 (2.0.0-1) ...
387s Selecting previously unselected package openjdk-21-jre-headless:arm64.
387s Preparing to unpack .../032-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ...
387s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ...
389s Selecting previously unselected package default-jre-headless.
389s Preparing to unpack .../033-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ...
389s Unpacking default-jre-headless (2:1.21-75+exp1) ...
389s Selecting previously unselected package libgtk2.0-common.
389s Preparing to unpack .../034-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ...
389s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ...
389s Selecting previously unselected package libatk1.0-0:arm64.
389s Preparing to unpack .../035-libatk1.0-0_2.50.0-1_arm64.deb ...
389s Unpacking libatk1.0-0:arm64 (2.50.0-1) ...
389s Selecting previously unselected package libpixman-1-0:arm64.
389s Preparing to unpack .../036-libpixman-1-0_0.42.2-1_arm64.deb ...
389s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
389s Selecting previously unselected package libxcb-render0:arm64.
389s Preparing to unpack .../037-libxcb-render0_1.15-1_arm64.deb ...
389s Unpacking libxcb-render0:arm64 (1.15-1) ...
389s Selecting previously unselected package libxcb-shm0:arm64.
389s Preparing to unpack .../038-libxcb-shm0_1.15-1_arm64.deb ...
389s Unpacking libxcb-shm0:arm64 (1.15-1) ...
389s Selecting previously unselected package libxrender1:arm64.
389s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
389s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
389s Selecting previously unselected package libcairo2:arm64.
389s Preparing to unpack .../040-libcairo2_1.18.0-1_arm64.deb ...
389s Unpacking libcairo2:arm64 (1.18.0-1) ...
389s Selecting previously unselected package fontconfig.
389s Preparing to unpack .../041-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
389s Unpacking fontconfig (2.15.0-1ubuntu1) ...
389s Selecting previously unselected package libthai-data.
389s Preparing to unpack .../042-libthai-data_0.1.29-2_all.deb ...
389s Unpacking libthai-data (0.1.29-2) ...
389s Selecting previously unselected package libdatrie1:arm64.
389s Preparing to unpack .../043-libdatrie1_0.2.13-3_arm64.deb ...
389s Unpacking libdatrie1:arm64 (0.2.13-3) ...
389s Selecting previously unselected package libthai0:arm64.
389s Preparing to unpack .../044-libthai0_0.1.29-2_arm64.deb ...
389s Unpacking libthai0:arm64 (0.1.29-2) ...
389s Selecting previously unselected package libpango-1.0-0:arm64.
389s Preparing to unpack .../045-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
389s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
389s Selecting previously unselected package libpangoft2-1.0-0:arm64.
389s Preparing to unpack .../046-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
389s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
389s Selecting previously unselected package libpangocairo-1.0-0:arm64.
389s Preparing to unpack .../047-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
389s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
389s Selecting previously unselected package libxcomposite1:arm64.
389s Preparing to unpack .../048-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ...
389s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ...
389s Selecting previously unselected package libxfixes3:arm64.
389s Preparing to unpack .../049-libxfixes3_1%3a6.0.0-2_arm64.deb ...
389s Unpacking libxfixes3:arm64 (1:6.0.0-2) ...
389s Selecting previously unselected package libxcursor1:arm64.
389s Preparing to unpack .../050-libxcursor1_1%3a1.2.1-1_arm64.deb ...
389s Unpacking libxcursor1:arm64 (1:1.2.1-1) ...
389s Selecting previously unselected package libxdamage1:arm64.
389s Preparing to unpack .../051-libxdamage1_1%3a1.1.6-1_arm64.deb ...
389s Unpacking libxdamage1:arm64 (1:1.1.6-1) ...
389s Selecting previously unselected package libxi6:arm64.
389s Preparing to unpack .../052-libxi6_2%3a1.8.1-1_arm64.deb ...
389s Unpacking libxi6:arm64 (2:1.8.1-1) ...
389s Selecting previously unselected package libxinerama1:arm64.
389s Preparing to unpack .../053-libxinerama1_2%3a1.1.4-3_arm64.deb ...
389s Unpacking libxinerama1:arm64 (2:1.1.4-3) ...
389s Selecting previously unselected package libxrandr2:arm64.
389s Preparing to unpack .../054-libxrandr2_2%3a1.5.2-2_arm64.deb ...
389s Unpacking libxrandr2:arm64 (2:1.5.2-2) ...
389s Selecting previously unselected package libgtk2.0-0:arm64.
389s Preparing to unpack .../055-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ...
389s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ...
389s Selecting previously unselected package libglvnd0:arm64.
389s Preparing to unpack .../056-libglvnd0_1.7.0-1_arm64.deb ...
389s Unpacking libglvnd0:arm64 (1.7.0-1) ...
389s Selecting previously unselected package libglapi-mesa:arm64.
389s Preparing to unpack .../057-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ...
389s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ...
389s Selecting previously unselected package libx11-xcb1:arm64.
389s Preparing to unpack .../058-libx11-xcb1_2%3a1.8.7-1_arm64.deb ...
389s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ...
389s Selecting previously unselected package libxcb-dri2-0:arm64.
389s Preparing to unpack .../059-libxcb-dri2-0_1.15-1_arm64.deb ...
389s Unpacking libxcb-dri2-0:arm64 (1.15-1) ...
389s Selecting previously unselected package libxcb-dri3-0:arm64.
389s Preparing to unpack .../060-libxcb-dri3-0_1.15-1_arm64.deb ...
389s Unpacking libxcb-dri3-0:arm64 (1.15-1) ...
389s Selecting previously unselected package libxcb-glx0:arm64.
389s Preparing to unpack .../061-libxcb-glx0_1.15-1_arm64.deb ...
389s Unpacking libxcb-glx0:arm64 (1.15-1) ...
389s Selecting previously unselected package libxcb-present0:arm64.
389s Preparing to unpack .../062-libxcb-present0_1.15-1_arm64.deb ...
389s Unpacking libxcb-present0:arm64 (1.15-1) ...
389s Selecting previously unselected package libxcb-randr0:arm64.
389s Preparing to unpack .../063-libxcb-randr0_1.15-1_arm64.deb ...
389s Unpacking libxcb-randr0:arm64 (1.15-1) ...
389s Selecting previously unselected package libxcb-sync1:arm64.
389s Preparing to unpack .../064-libxcb-sync1_1.15-1_arm64.deb ...
389s Unpacking libxcb-sync1:arm64 (1.15-1) ...
389s Selecting previously unselected package libxcb-xfixes0:arm64.
389s Preparing to unpack .../065-libxcb-xfixes0_1.15-1_arm64.deb ...
389s Unpacking libxcb-xfixes0:arm64 (1.15-1) ...
389s Selecting previously unselected package libxshmfence1:arm64.
389s Preparing to unpack .../066-libxshmfence1_1.3-1build4_arm64.deb ...
389s Unpacking libxshmfence1:arm64 (1.3-1build4) ...
389s Selecting previously unselected package libxxf86vm1:arm64.
389s Preparing to unpack .../067-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ...
389s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ...
389s Selecting previously unselected package libvulkan1:arm64.
389s Preparing to unpack .../068-libvulkan1_1.3.275.0-1_arm64.deb ...
389s Unpacking libvulkan1:arm64 (1.3.275.0-1) ...
389s Selecting previously unselected package libdrm-amdgpu1:arm64.
389s Preparing to unpack .../069-libdrm-amdgpu1_2.4.120-2_arm64.deb ...
389s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ...
389s Selecting previously unselected package libdrm-nouveau2:arm64.
389s Preparing to unpack .../070-libdrm-nouveau2_2.4.120-2_arm64.deb ...
389s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ...
389s Selecting previously unselected package libdrm-radeon1:arm64.
389s Preparing to unpack .../071-libdrm-radeon1_2.4.120-2_arm64.deb ...
389s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ...
389s Selecting previously unselected package libllvm17:arm64.
389s Preparing to unpack .../072-libllvm17_1%3a17.0.6-5build1_arm64.deb ...
389s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ...
390s Selecting previously unselected package libgl1-mesa-dri:arm64.
390s Preparing to unpack .../073-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ...
390s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ...
390s Selecting previously unselected package libglx-mesa0:arm64.
390s Preparing to unpack .../074-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ...
390s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ...
390s Selecting previously unselected package libglx0:arm64.
390s Preparing to unpack .../075-libglx0_1.7.0-1_arm64.deb ...
390s Unpacking libglx0:arm64 (1.7.0-1) ...
390s Selecting previously unselected package libgl1:arm64.
390s Preparing to unpack .../076-libgl1_1.7.0-1_arm64.deb ...
390s Unpacking libgl1:arm64 (1.7.0-1) ...
390s Selecting previously unselected package libgif7:arm64.
390s Preparing to unpack .../077-libgif7_5.2.1-2.5_arm64.deb ...
390s Unpacking libgif7:arm64 (5.2.1-2.5) ...
390s Selecting previously unselected package x11-common.
390s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ...
390s Unpacking x11-common (1:7.7+23ubuntu2) ...
390s Selecting previously unselected package libxtst6:arm64.
390s Preparing to unpack .../079-libxtst6_2%3a1.2.3-1.1_arm64.deb ...
390s Unpacking libxtst6:arm64 (2:1.2.3-1.1) ...
390s Selecting previously unselected package openjdk-21-jre:arm64.
390s Preparing to unpack .../080-openjdk-21-jre_21.0.2+13-2_arm64.deb ...
390s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ...
390s Selecting previously unselected package default-jre.
390s Preparing to unpack .../081-default-jre_2%3a1.21-75+exp1_arm64.deb ...
390s Unpacking default-jre (2:1.21-75+exp1) ...
390s Selecting previously unselected package libapache-pom-java.
390s Preparing to unpack .../082-libapache-pom-java_29-2_all.deb ...
390s Unpacking libapache-pom-java (29-2) ...
390s Selecting previously unselected package libcommons-parent-java.
390s Preparing to unpack .../083-libcommons-parent-java_56-1_all.deb ...
390s Unpacking libcommons-parent-java (56-1) ...
390s Selecting previously unselected package libcommons-compress-java.
390s Preparing to unpack .../084-libcommons-compress-java_1.25.0-1_all.deb ...
390s Unpacking libcommons-compress-java (1.25.0-1) ...
390s Selecting previously unselected package libcommons-logging-java.
390s Preparing to unpack .../085-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ...
390s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ...
390s Selecting previously unselected package libcommons-jexl2-java.
391s Preparing to unpack .../086-libcommons-jexl2-java_2.1.1-6_all.deb ...
391s Unpacking libcommons-jexl2-java (2.1.1-6) ...
391s Selecting previously unselected package libmjson-java.
391s Preparing to unpack .../087-libmjson-java_1.4.0-3_all.deb ...
391s Unpacking libmjson-java (1.4.0-3) ...
391s Selecting previously unselected package libmbedcrypto7:arm64.
391s Preparing to unpack .../088-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ...
391s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ...
391s Selecting previously unselected package libmbedx509-1:arm64.
391s Preparing to unpack .../089-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ...
391s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ...
391s Selecting previously unselected package libmbedtls14:arm64.
391s Preparing to unpack .../090-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ...
391s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ...
391s Selecting previously unselected package ncbi-vdb-data.
391s Preparing to unpack .../091-ncbi-vdb-data_3.0.2+dfsg-2_all.deb ...
391s Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ...
391s Selecting previously unselected package libncbi-vdb3:arm64.
391s Preparing to unpack .../092-libncbi-vdb3_3.0.2+dfsg-2_arm64.deb ...
391s Unpacking libncbi-vdb3:arm64 (3.0.2+dfsg-2) ...
391s Selecting previously unselected package libncbi-ngs3:arm64.
391s Preparing to unpack .../093-libncbi-ngs3_3.0.3+dfsg-6ubuntu1_arm64.deb ...
391s Unpacking libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ...
391s Selecting previously unselected package libngs-jni:arm64.
391s Preparing to unpack .../094-libngs-jni_3.0.3+dfsg-6ubuntu1_arm64.deb ...
391s Unpacking libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ...
391s Selecting previously unselected package libngs-java:arm64.
391s Preparing to unpack .../095-libngs-java_3.0.3+dfsg-6ubuntu1_arm64.deb ...
391s Unpacking libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ...
391s Selecting previously unselected package librhino-java.
391s Preparing to unpack .../096-librhino-java_1.7.14-2.1_all.deb ...
391s Unpacking librhino-java (1.7.14-2.1) ...
391s Selecting previously unselected package libsnappy1v5:arm64.
391s Preparing to unpack .../097-libsnappy1v5_1.1.10-1_arm64.deb ...
391s Unpacking libsnappy1v5:arm64 (1.1.10-1) ...
391s Selecting previously unselected package libsnappy-jni.
391s Preparing to unpack .../098-libsnappy-jni_1.1.10.5-1_arm64.deb ...
391s Unpacking libsnappy-jni (1.1.10.5-1) ...
391s Selecting previously unselected package libsnappy-java.
391s Preparing to unpack .../099-libsnappy-java_1.1.10.5-1_all.deb ...
391s Unpacking libsnappy-java (1.1.10.5-1) ...
391s Selecting previously unselected package libhtsjdk-java.
391s Preparing to unpack .../100-libhtsjdk-java_4.1.0+dfsg-1_all.deb ...
391s Unpacking libhtsjdk-java (4.1.0+dfsg-1) ...
391s Selecting previously unselected package beagle.
391s Preparing to unpack .../101-beagle_220722-1_all.deb ...
391s Unpacking beagle (220722-1) ...
391s Selecting previously unselected package beagle-doc.
391s Preparing to unpack .../102-beagle-doc_220722-1_all.deb ...
391s Unpacking beagle-doc (220722-1) ...
391s Selecting previously unselected package autopkgtest-satdep.
391s Preparing to unpack .../103-1-autopkgtest-satdep.deb ...
391s Unpacking autopkgtest-satdep (0) ...
391s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
391s Setting up libxcb-dri3-0:arm64 (1.15-1) ...
391s Setting up liblcms2-2:arm64 (2.14-2) ...
391s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
391s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
391s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ...
391s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ...
391s Setting up libxdamage1:arm64 (1:1.1.6-1) ...
391s Setting up libxcb-xfixes0:arm64 (1.15-1) ...
391s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
391s Setting up hicolor-icon-theme (0.17-2) ...
391s Setting up libxi6:arm64 (2:1.8.1-1) ...
391s Setting up java-common (0.75+exp1) ...
391s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
391s Setting up libdatrie1:arm64 (0.2.13-3) ...
391s Setting up beagle-doc (220722-1) ...
391s Setting up libxcb-render0:arm64 (1.15-1) ...
391s Setting up libdrm-radeon1:arm64 (2.4.120-2) ...
391s Setting up libglvnd0:arm64 (1.7.0-1) ...
391s Setting up libmjson-java (1.4.0-3) ...
391s Setting up libxcb-glx0:arm64 (1.15-1) ...
391s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
391s Setting up x11-common (1:7.7+23ubuntu2) ...
391s Setting up libdeflate0:arm64 (1.19-1) ...
391s Setting up libxcb-shm0:arm64 (1.15-1) ...
391s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
391s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ...
391s Setting up libsnappy1v5:arm64 (1.1.10-1) ...
391s Setting up libxcb-present0:arm64 (1.15-1) ...
391s Setting up libasound2-data (1.2.10-3build1) ...
391s Setting up librhino-java (1.7.14-2.1) ...
391s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ...
391s Setting up libxfixes3:arm64 (1:6.0.0-2) ...
391s Setting up libxcb-sync1:arm64 (1.15-1) ...
391s Setting up libapache-pom-java (29-2) ...
391s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ...
391s Setting up libxinerama1:arm64 (2:1.1.4-3) ...
391s Setting up fonts-dejavu-mono (2.37-8) ...
391s Setting up libxrandr2:arm64 (2:1.5.2-2) ...
391s Setting up fonts-dejavu-core (2.37-8) ...
391s Setting up libpcsclite1:arm64 (2.0.0-1) ...
391s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
391s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ...
391s Setting up libvulkan1:arm64 (1.3.275.0-1) ...
391s Setting up libwebp7:arm64 (1.3.2-0.4) ...
391s Setting up libxcb-dri2-0:arm64 (1.15-1) ...
391s Setting up libgif7:arm64 (5.2.1-2.5) ...
391s Setting up libxshmfence1:arm64 (1.3-1build4) ...
391s Setting up at-spi2-common (2.50.0-1) ...
391s Setting up libxcb-randr0:arm64 (1.15-1) ...
391s Setting up libasound2:arm64 (1.2.10-3build1) ...
391s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
391s Setting up ncbi-vdb-data (3.0.2+dfsg-2) ...
391s Setting up libthai-data (0.1.29-2) ...
391s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ...
391s Setting up libatk1.0-0:arm64 (2.50.0-1) ...
391s Setting up ca-certificates-java (20240118) ...
391s No JRE found. Skipping Java certificates setup.
391s Setting up libllvm17:arm64 (1:17.0.6-5build1) ...
391s Setting up libsnappy-jni (1.1.10.5-1) ...
391s Setting up libxcomposite1:arm64 (1:0.4.5-1build2) ...
391s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ...
391s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
391s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ...
391s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ...
391s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
391s Setting up libxtst6:arm64 (2:1.2.3-1.1) ...
391s Setting up libxcursor1:arm64 (1:1.2.1-1) ...
392s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ...
392s Setting up libcommons-parent-java (56-1) ...
392s Setting up libavahi-common3:arm64 (0.8-13ubuntu2) ...
392s Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ...
392s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ...
392s Setting up libcommons-jexl2-java (2.1.1-6) ...
392s Setting up libthai0:arm64 (0.1.29-2) ...
392s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
392s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ...
392s Setting up libsnappy-java (1.1.10.5-1) ...
392s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
392s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ...
392s Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6ubuntu1) ...
392s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ...
392s Setting up fontconfig (2.15.0-1ubuntu1) ...
394s Regenerating fonts cache... done.
394s Setting up libngs-jni:arm64 (3.0.3+dfsg-6ubuntu1) ...
394s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ...
394s Setting up libglx0:arm64 (1.7.0-1) ...
394s Setting up libcommons-compress-java (1.25.0-1) ...
394s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
394s Setting up libcairo2:arm64 (1.18.0-1) ...
394s Setting up libgl1:arm64 (1.7.0-1) ...
394s Setting up libcups2:arm64 (2.4.6-0ubuntu3) ...
394s Setting up libngs-java:arm64 (3.0.3+dfsg-6ubuntu1) ...
394s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
394s Setting up libhtsjdk-java (4.1.0+dfsg-1) ...
394s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
394s Setting up openjdk-21-jre-headless:arm64 (21.0.2+13-2) ...
394s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode
394s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
394s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
394s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
394s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
394s Setting up adwaita-icon-theme (46~rc-1) ...
394s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
394s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ...
394s Setting up humanity-icon-theme (0.6.16) ...
394s Setting up ubuntu-mono (24.04-0ubuntu1) ...
394s Processing triggers for man-db (2.12.0-3) ...
394s Processing triggers for libc-bin (2.39-0ubuntu2) ...
394s Processing triggers for ca-certificates-java (20240118) ...
395s Adding debian:ACCVRAIZ1.pem
395s Adding debian:AC_RAIZ_FNMT-RCM.pem
395s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
395s Adding debian:ANF_Secure_Server_Root_CA.pem
395s Adding debian:Actalis_Authentication_Root_CA.pem
395s Adding debian:AffirmTrust_Commercial.pem
395s Adding debian:AffirmTrust_Networking.pem
395s Adding debian:AffirmTrust_Premium.pem
395s Adding debian:AffirmTrust_Premium_ECC.pem
395s Adding debian:Amazon_Root_CA_1.pem
395s Adding debian:Amazon_Root_CA_2.pem
395s Adding debian:Amazon_Root_CA_3.pem
395s Adding debian:Amazon_Root_CA_4.pem
395s Adding debian:Atos_TrustedRoot_2011.pem
395s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
395s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
395s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
395s Adding debian:BJCA_Global_Root_CA1.pem
395s Adding debian:BJCA_Global_Root_CA2.pem
395s Adding debian:Baltimore_CyberTrust_Root.pem
395s Adding debian:Buypass_Class_2_Root_CA.pem
395s Adding debian:Buypass_Class_3_Root_CA.pem
395s Adding debian:CA_Disig_Root_R2.pem
395s Adding debian:CFCA_EV_ROOT.pem
395s Adding debian:COMODO_Certification_Authority.pem
395s Adding debian:COMODO_ECC_Certification_Authority.pem
395s Adding debian:COMODO_RSA_Certification_Authority.pem
395s Adding debian:Certainly_Root_E1.pem
395s Adding debian:Certainly_Root_R1.pem
395s Adding debian:Certigna.pem
395s Adding debian:Certigna_Root_CA.pem
395s Adding debian:Certum_EC-384_CA.pem
395s Adding debian:Certum_Trusted_Network_CA.pem
395s Adding debian:Certum_Trusted_Network_CA_2.pem
395s Adding debian:Certum_Trusted_Root_CA.pem
395s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
395s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
395s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
395s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
395s Adding debian:Comodo_AAA_Services_root.pem
395s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
395s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
395s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
395s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
395s Adding debian:DigiCert_Assured_ID_Root_CA.pem
395s Adding debian:DigiCert_Assured_ID_Root_G2.pem
395s Adding debian:DigiCert_Assured_ID_Root_G3.pem
395s Adding debian:DigiCert_Global_Root_CA.pem
395s Adding debian:DigiCert_Global_Root_G2.pem
395s Adding debian:DigiCert_Global_Root_G3.pem
395s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
395s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
395s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
395s Adding debian:DigiCert_Trusted_Root_G4.pem
395s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
395s Adding debian:Entrust_Root_Certification_Authority.pem
395s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
395s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
395s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
395s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
395s Adding debian:GLOBALTRUST_2020.pem
395s Adding debian:GTS_Root_R1.pem
395s Adding debian:GTS_Root_R2.pem
395s Adding debian:GTS_Root_R3.pem
395s Adding debian:GTS_Root_R4.pem
395s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
395s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
395s Adding debian:GlobalSign_Root_CA.pem
395s Adding debian:GlobalSign_Root_CA_-_R3.pem
395s Adding debian:GlobalSign_Root_CA_-_R6.pem
395s Adding debian:GlobalSign_Root_E46.pem
395s Adding debian:GlobalSign_Root_R46.pem
395s Adding debian:Go_Daddy_Class_2_CA.pem
395s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
395s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
395s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
395s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
395s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
395s Adding debian:HiPKI_Root_CA_-_G1.pem
395s Adding debian:Hongkong_Post_Root_CA_3.pem
395s Adding debian:ISRG_Root_X1.pem
395s Adding debian:ISRG_Root_X2.pem
395s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
395s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
395s Adding debian:Izenpe.com.pem
395s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
395s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
395s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
395s Adding debian:NAVER_Global_Root_Certification_Authority.pem
395s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
395s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
395s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
395s Adding debian:QuoVadis_Root_CA_1_G3.pem
395s Adding debian:QuoVadis_Root_CA_2.pem
395s Adding debian:QuoVadis_Root_CA_2_G3.pem
395s Adding debian:QuoVadis_Root_CA_3.pem
395s Adding debian:QuoVadis_Root_CA_3_G3.pem
395s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
395s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
395s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
395s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
395s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
395s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
395s Adding debian:SZAFIR_ROOT_CA2.pem
395s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
395s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
395s Adding debian:SecureSign_RootCA11.pem
395s Adding debian:SecureTrust_CA.pem
395s Adding debian:Secure_Global_CA.pem
395s Adding debian:Security_Communication_ECC_RootCA1.pem
395s Adding debian:Security_Communication_RootCA2.pem
395s Adding debian:Security_Communication_RootCA3.pem
395s Adding debian:Security_Communication_Root_CA.pem
395s Adding debian:Starfield_Class_2_CA.pem
395s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
395s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
395s Adding debian:SwissSign_Gold_CA_-_G2.pem
395s Adding debian:SwissSign_Silver_CA_-_G2.pem
395s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
395s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
395s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
395s Adding debian:TWCA_Global_Root_CA.pem
395s Adding debian:TWCA_Root_Certification_Authority.pem
395s Adding debian:TeliaSonera_Root_CA_v1.pem
395s Adding debian:Telia_Root_CA_v2.pem
395s Adding debian:TrustAsia_Global_Root_CA_G3.pem
395s Adding debian:TrustAsia_Global_Root_CA_G4.pem
395s Adding debian:Trustwave_Global_Certification_Authority.pem
395s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
395s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
395s Adding debian:TunTrust_Root_CA.pem
395s Adding debian:UCA_Extended_Validation_Root.pem
395s Adding debian:UCA_Global_G2_Root.pem
395s Adding debian:USERTrust_ECC_Certification_Authority.pem
395s Adding debian:USERTrust_RSA_Certification_Authority.pem
395s Adding debian:XRamp_Global_CA_Root.pem
395s Adding debian:certSIGN_ROOT_CA.pem
395s Adding debian:certSIGN_Root_CA_G2.pem
395s Adding debian:e-Szigno_Root_CA_2017.pem
395s Adding debian:ePKI_Root_Certification_Authority.pem
395s Adding debian:emSign_ECC_Root_CA_-_C3.pem
395s Adding debian:emSign_ECC_Root_CA_-_G3.pem
395s Adding debian:emSign_Root_CA_-_C1.pem
395s Adding debian:emSign_Root_CA_-_G1.pem
395s Adding debian:vTrus_ECC_Root_CA.pem
395s Adding debian:vTrus_Root_CA.pem
395s done.
395s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ...
395s Setting up default-jre-headless (2:1.21-75+exp1) ...
395s Setting up default-jre (2:1.21-75+exp1) ...
395s Setting up beagle (220722-1) ...
395s Setting up autopkgtest-satdep (0) ...
400s (Reading database ... 89679 files and directories currently installed.)
400s Removing autopkgtest-satdep (0) ...
401s autopkgtest [07:53:29]: test run-sample-analysis: [-----------------------
403s beagle.22Jul22.46e.jar (version 5.4)
403s Copyright (C) 2014-2022 Brian L. Browning
403s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument
403s Start time: 07:53 AM UTC on 21 Mar 2024
403s 
403s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar
403s   gt=test.vcf.gz
403s   out=out.gt
403s   nthreads=1
403s 
403s No genetic map is specified: using 1 cM = 1 Mb
403s 
403s Reference samples:                    0
403s Study     samples:                  191
403s 
403s Window 1 [22:20000086-20099941]
403s Study     markers:                1,356
405s 
405s Burnin  iteration 1:           1 second
405s Burnin  iteration 2:           0 seconds
405s 
405s Estimated ne:                  136281
405s Estimated err:                 1.4e-03
405s 
405s Phasing iteration 1:           0 seconds
405s Phasing iteration 2:           0 seconds
405s Phasing iteration 3:           0 seconds
406s Phasing iteration 4:           0 seconds
406s Phasing iteration 5:           0 seconds
406s Phasing iteration 6:           0 seconds
406s Phasing iteration 7:           0 seconds
406s Phasing iteration 8:           0 seconds
406s Phasing iteration 9:           0 seconds
406s Phasing iteration 10:          0 seconds
406s Phasing iteration 11:          0 seconds
406s Phasing iteration 12:          0 seconds
406s Low frequency phasing:         0 seconds
407s 
407s Cumulative Statistics:
407s 
407s Study     markers:                1,356
407s 
407s Haplotype phasing time:        3 seconds
407s Total time:                    4 seconds
407s 
407s End time: 07:53 AM UTC on 21 Mar 2024
407s beagle.22Jul22.46e.jar finished
407s beagle.22Jul22.46e.jar (version 5.4)
407s Copyright (C) 2014-2022 Brian L. Browning
407s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument
407s Start time: 07:53 AM UTC on 21 Mar 2024
407s 
407s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar
407s   ref=ref.vcf.gz
407s   gt=target.vcf.gz
407s   out=out.ref
407s   nthreads=1
407s 
407s No genetic map is specified: using 1 cM = 1 Mb
407s 
407s Reference samples:                  181
407s Study     samples:                   10
407s 
407s Window 1 [22:20000086-20099941]
407s Reference markers:                1,356
407s Study     markers:                1,356
408s 
408s Burnin  iteration 1:           0 seconds
408s Burnin  iteration 2:           0 seconds
408s 
408s Estimated ne:                  217008
408s Estimated err:                 1.4e-03
408s 
408s Phasing iteration 1:           0 seconds
408s Phasing iteration 2:           0 seconds
408s Phasing iteration 3:           0 seconds
408s Phasing iteration 4:           0 seconds
408s Phasing iteration 5:           0 seconds
408s Phasing iteration 6:           0 seconds
408s Phasing iteration 7:           0 seconds
408s Phasing iteration 8:           0 seconds
408s Phasing iteration 9:           0 seconds
408s Phasing iteration 10:          0 seconds
408s Phasing iteration 11:          0 seconds
408s Phasing iteration 12:          0 seconds
408s Low frequency phasing:         0 seconds
408s 
408s Cumulative Statistics:
408s 
408s Study     markers:                1,356
408s 
408s Haplotype phasing time:        1 second
408s Total time:                    2 seconds
408s 
408s End time: 07:53 AM UTC on 21 Mar 2024
408s beagle.22Jul22.46e.jar finished
408s beagle.22Jul22.46e.jar (version 5.4)
408s Copyright (C) 2014-2022 Brian L. Browning
408s Enter "java -jar beagle.22Jul22.46e.jar" to list command line argument
409s Start time: 07:53 AM UTC on 21 Mar 2024
409s 
409s Command line: java -Xmx351m -jar beagle.22Jul22.46e.jar
409s   ref=ref.bref3
409s   gt=target.vcf.gz
409s   out=out.bref3
409s   nthreads=1
409s 
409s No genetic map is specified: using 1 cM = 1 Mb
409s 
409s Reference samples:                  181
409s Study     samples:                   10
409s 
409s Window 1 [22:20000086-20099941]
409s Reference markers:                1,356
409s Study     markers:                1,356
409s 
409s Burnin  iteration 1:           0 seconds
409s Burnin  iteration 2:           0 seconds
410s 
410s Estimated ne:                  217008
410s Estimated err:                 1.4e-03
410s 
410s Phasing iteration 1:           0 seconds
410s Phasing iteration 2:           0 seconds
410s Phasing iteration 3:           0 seconds
410s Phasing iteration 4:           0 seconds
410s Phasing iteration 5:           0 seconds
410s Phasing iteration 6:           0 seconds
410s Phasing iteration 7:           0 seconds
410s Phasing iteration 8:           0 seconds
410s Phasing iteration 9:           0 seconds
410s Phasing iteration 10:          0 seconds
410s Phasing iteration 11:          0 seconds
410s Phasing iteration 12:          0 seconds
410s Low frequency phasing:         0 seconds
410s 
410s Cumulative Statistics:
410s 
410s Study     markers:                1,356
410s 
410s Haplotype phasing time:        1 second
410s Total time:                    2 seconds
410s 
410s End time: 07:53 AM UTC on 21 Mar 2024
410s beagle.22Jul22.46e.jar finished
410s autopkgtest [07:53:38]: test run-sample-analysis: -----------------------]
411s run-sample-analysis  PASS
411s autopkgtest [07:53:39]: test run-sample-analysis:  - - - - - - - - - - results - - - - - - - - - -
411s autopkgtest [07:53:39]: @@@@@@@@@@@@@@@@@@@@ summary
411s run-sample-analysis  PASS
446s Creating nova instance adt-noble-arm64-beagle-20240321-074648-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240319.img (UUID bd25b89b-8264-4402-95d9-d9c88f21f275)...