0s autopkgtest [02:14:44]: starting date and time: 2024-03-24 02:14:44+0000 0s autopkgtest [02:14:44]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [02:14:44]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.paja1dv5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:netcdf-fortran,src:curl,src:gnutls28,src:hdf5,src:libpsl,src:netcdf,src:nettle,src:openssl,src:orthanc-python --apt-upgrade abinit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=netcdf-fortran/4.6.0+really4.5.4+ds-3build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu3 libpsl/0.21.2-1.1 netcdf/1:4.9.2-5ubuntu3 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-8.secgroup --name adt-noble-arm64-abinit-20240324-021444-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 69s autopkgtest [02:15:53]: testbed dpkg architecture: arm64 69s autopkgtest [02:15:53]: testbed apt version: 2.7.12 69s autopkgtest [02:15:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 69s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 70s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 70s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 70s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4043 kB] 70s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 70s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [707 kB] 70s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 70s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 70s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 70s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4363 kB] 70s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 71s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 71s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 72s Fetched 9903 kB in 2s (5078 kB/s) 72s Reading package lists... 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 76s Calculating upgrade... 76s The following packages will be REMOVED: 76s libssl3 76s The following NEW packages will be installed: 76s libssl3t64 76s The following packages have been kept back: 76s curl 76s The following packages will be upgraded: 76s openssl 76s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 76s Need to get 2777 kB of archives. 76s After this operation, 139 kB of additional disk space will be used. 76s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 77s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 77s Fetched 2777 kB in 1s (4171 kB/s) 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 77s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 77s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 77s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 77s wget depends on libssl3 (>= 3.0.0). 77s u-boot-tools depends on libssl3 (>= 3.0.0). 77s tnftp depends on libssl3 (>= 3.0.0). 77s tcpdump depends on libssl3 (>= 3.0.0). 77s systemd-resolved depends on libssl3 (>= 3.0.0). 77s systemd depends on libssl3 (>= 3.0.0). 77s sudo depends on libssl3 (>= 3.0.0). 77s sbsigntool depends on libssl3 (>= 3.0.0). 77s rsync depends on libssl3 (>= 3.0.0). 77s python3-cryptography depends on libssl3 (>= 3.0.0). 77s openssh-server depends on libssl3 (>= 3.0.10). 77s openssh-client depends on libssl3 (>= 3.0.10). 77s mtd-utils depends on libssl3 (>= 3.0.0). 77s mokutil depends on libssl3 (>= 3.0.0). 77s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 77s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 77s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 77s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 77s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 77s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 77s libnvme1 depends on libssl3 (>= 3.0.0). 77s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 77s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 77s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 77s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 77s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 77s kmod depends on libssl3 (>= 3.0.0). 77s dhcpcd-base depends on libssl3 (>= 3.0.0). 77s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 77s 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74819 files and directories currently installed.) 77s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 77s Selecting previously unselected package libssl3t64:arm64. 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74808 files and directories currently installed.) 77s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 77s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 77s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 77s Setting up openssl (3.0.13-0ubuntu2) ... 78s Processing triggers for man-db (2.12.0-3) ... 78s Processing triggers for libc-bin (2.39-0ubuntu6) ... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 80s sh: Attempting to set up Debian/Ubuntu apt sources automatically 80s sh: Distribution appears to be Ubuntu 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s eatmydata is already the newest version (131-1). 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s dbus is already the newest version (1.14.10-4ubuntu1). 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s rng-tools-debian is already the newest version (2.4). 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s The following packages will be REMOVED: 84s cloud-init* python3-configobj* python3-debconf* 84s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 84s After this operation, 3256 kB disk space will be freed. 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74821 files and directories currently installed.) 84s Removing cloud-init (24.1.2-0ubuntu1) ... 85s Removing python3-configobj (5.0.8-3) ... 85s Removing python3-debconf (1.5.86) ... 85s Processing triggers for man-db (2.12.0-3) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74432 files and directories currently installed.) 86s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 86s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 86s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 86s invoke-rc.d: policy-rc.d denied execution of try-restart. 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s linux-generic is already the newest version (6.8.0-11.11+1). 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 88s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 90s Reading package lists... 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Calculating upgrade... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s autopkgtest [02:16:16]: rebooting testbed after setup commands that affected boot 250s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 257s autopkgtest [02:19:01]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 260s autopkgtest [02:19:04]: @@@@@@@@@@@@@@@@@@@@ apt-source abinit 267s Get:1 http://ftpmaster.internal/ubuntu noble/universe abinit 9.10.4-2ubuntu1 (dsc) [2608 B] 267s Get:2 http://ftpmaster.internal/ubuntu noble/universe abinit 9.10.4-2ubuntu1 (tar) [131 MB] 267s Get:3 http://ftpmaster.internal/ubuntu noble/universe abinit 9.10.4-2ubuntu1 (diff) [15.0 kB] 268s gpgv: Signature made Mon Jan 22 02:27:00 2024 UTC 268s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 268s gpgv: issuer "steve.langasek@ubuntu.com" 268s gpgv: Can't check signature: No public key 268s dpkg-source: warning: cannot verify inline signature for ./abinit_9.10.4-2ubuntu1.dsc: no acceptable signature found 272s autopkgtest [02:19:16]: testing package abinit version 9.10.4-2ubuntu1 272s autopkgtest [02:19:16]: build not needed 293s autopkgtest [02:19:37]: test run-unit-test: preparing testbed 303s Reading package lists... 303s Building dependency tree... 303s Reading state information... 303s Starting pkgProblemResolver with broken count: 0 304s Starting 2 pkgProblemResolver with broken count: 0 304s Done 304s The following additional packages will be installed: 304s abinit abinit-data abinit-doc libaec0 libamd-comgr2 libamdhip64-5 libatomic1 304s libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libgfortran5 304s libhdf5-103-1 libhdf5-hl-100 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins 304s libhwloc15 liblapack3 libllvm17 libmunge2 libnetcdf19 libnetcdff7 304s libopenmpi3 libpciaccess0 libpmix2 libpython3.11-minimal 304s libpython3.11-stdlib librdmacm1t64 libsz2 libucx0 libxc9 libxnvctrl0 304s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 304s python3-dateutil python3-numpy python3-pandas python3-pandas-lib python3.11 304s python3.11-minimal 304s Suggested packages: 304s opencl-icd gfortran | fortran-compiler gcc gfortran python3-dev 304s python3-pytest python-pandas-doc python3-statsmodels python3.11-venv 304s python3.11-doc binfmt-support 304s Recommended packages: 304s python3-scipy python3-matplotlib python3-bottleneck python3-numexpr 304s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 304s python3-tables 304s The following NEW packages will be installed: 304s abinit abinit-data abinit-doc autopkgtest-satdep libaec0 libamd-comgr2 304s libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7 304s libfabric1 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libhsa-runtime64-1 304s libhsakmt1 libhwloc-plugins libhwloc15 liblapack3 libllvm17 libmunge2 304s libnetcdf19 libnetcdff7 libopenmpi3 libpciaccess0 libpmix2 304s libpython3.11-minimal libpython3.11-stdlib librdmacm1t64 libsz2 libucx0 304s libxc9 libxnvctrl0 mpi-default-bin ocl-icd-libopencl1 openmpi-bin 304s openmpi-common python3-dateutil python3-numpy python3-pandas 304s python3-pandas-lib python3.11 python3.11-minimal 304s 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. 304s Need to get 147 MB/147 MB of archives. 304s After this operation, 668 MB of additional disk space will be used. 304s Get:1 /tmp/autopkgtest.kIz9im/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 305s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 305s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 305s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 305s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 305s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 305s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 305s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 305s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 305s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 305s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 305s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 305s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 305s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdff7 arm64 4.6.0+really4.5.4+ds-3 [130 kB] 305s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 305s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 305s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 305s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3build1 [541 kB] 305s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 305s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 305s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 305s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 305s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 305s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 305s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libpmix2 arm64 5.0.1-4 [659 kB] 305s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 306s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 306s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 306s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 306s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 306s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 307s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 307s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libopenmpi3 arm64 4.1.6-5ubuntu1 [3081 kB] 307s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libxc9 arm64 5.2.3-1ubuntu1 [4109 kB] 307s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-common all 4.1.6-5ubuntu1 [178 kB] 307s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 openmpi-bin arm64 4.1.6-5ubuntu1 [123 kB] 307s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 307s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 abinit arm64 9.10.4-2ubuntu1 [30.5 MB] 308s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 abinit-data all 9.10.4-2ubuntu1 [34.2 MB] 308s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 abinit-doc all 9.10.4-2ubuntu1 [2301 kB] 308s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 308s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 309s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB] 309s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 310s Fetched 147 MB in 4s (33.4 MB/s) 310s Selecting previously unselected package libpython3.11-minimal:arm64. 310s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74377 files and directories currently installed.) 310s Preparing to unpack .../00-libpython3.11-minimal_3.11.8-1_arm64.deb ... 310s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 310s Selecting previously unselected package python3.11-minimal. 310s Preparing to unpack .../01-python3.11-minimal_3.11.8-1_arm64.deb ... 310s Unpacking python3.11-minimal (3.11.8-1) ... 310s Selecting previously unselected package libpython3.11-stdlib:arm64. 310s Preparing to unpack .../02-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 310s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 310s Selecting previously unselected package python3.11. 310s Preparing to unpack .../03-python3.11_3.11.8-1_arm64.deb ... 310s Unpacking python3.11 (3.11.8-1) ... 310s Selecting previously unselected package libblas3:arm64. 310s Preparing to unpack .../04-libblas3_3.12.0-3_arm64.deb ... 310s Unpacking libblas3:arm64 (3.12.0-3) ... 310s Selecting previously unselected package libgfortran5:arm64. 310s Preparing to unpack .../05-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 310s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 310s Selecting previously unselected package liblapack3:arm64. 310s Preparing to unpack .../06-liblapack3_3.12.0-3_arm64.deb ... 310s Unpacking liblapack3:arm64 (3.12.0-3) ... 310s Selecting previously unselected package libaec0:arm64. 310s Preparing to unpack .../07-libaec0_1.1.2-1_arm64.deb ... 310s Unpacking libaec0:arm64 (1.1.2-1) ... 310s Selecting previously unselected package libsz2:arm64. 310s Preparing to unpack .../08-libsz2_1.1.2-1_arm64.deb ... 310s Unpacking libsz2:arm64 (1.1.2-1) ... 311s Selecting previously unselected package libhdf5-103-1:arm64. 311s Preparing to unpack .../09-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 311s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 311s Selecting previously unselected package libhdf5-hl-100:arm64. 311s Preparing to unpack .../10-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 311s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 311s Selecting previously unselected package libnetcdf19:arm64. 311s Preparing to unpack .../11-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 311s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 311s Selecting previously unselected package libnetcdff7:arm64. 311s Preparing to unpack .../12-libnetcdff7_4.6.0+really4.5.4+ds-3_arm64.deb ... 311s Unpacking libnetcdff7:arm64 (4.6.0+really4.5.4+ds-3) ... 311s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 311s Preparing to unpack .../13-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 311s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 311s Selecting previously unselected package libatomic1:arm64. 311s Preparing to unpack .../14-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 311s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 311s Selecting previously unselected package librdmacm1t64:arm64. 311s Preparing to unpack .../15-librdmacm1t64_50.0-2_arm64.deb ... 311s Unpacking librdmacm1t64:arm64 (50.0-2) ... 311s Selecting previously unselected package libfabric1:arm64. 311s Preparing to unpack .../16-libfabric1_1.17.0-3build1_arm64.deb ... 311s Unpacking libfabric1:arm64 (1.17.0-3build1) ... 311s Selecting previously unselected package libhwloc15:arm64. 311s Preparing to unpack .../17-libhwloc15_2.10.0-1_arm64.deb ... 311s Unpacking libhwloc15:arm64 (2.10.0-1) ... 311s Selecting previously unselected package libmunge2:arm64. 311s Preparing to unpack .../18-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 311s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 311s Selecting previously unselected package libpciaccess0:arm64. 311s Preparing to unpack .../19-libpciaccess0_0.17-3_arm64.deb ... 311s Unpacking libpciaccess0:arm64 (0.17-3) ... 311s Selecting previously unselected package libxnvctrl0:arm64. 311s Preparing to unpack .../20-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 311s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 311s Selecting previously unselected package ocl-icd-libopencl1:arm64. 311s Preparing to unpack .../21-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 311s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 311s Selecting previously unselected package libhwloc-plugins:arm64. 311s Preparing to unpack .../22-libhwloc-plugins_2.10.0-1_arm64.deb ... 311s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 311s Selecting previously unselected package libpmix2:arm64. 311s Preparing to unpack .../23-libpmix2_5.0.1-4_arm64.deb ... 311s Unpacking libpmix2:arm64 (5.0.1-4) ... 311s Selecting previously unselected package libllvm17:arm64. 311s Preparing to unpack .../24-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 311s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 312s Selecting previously unselected package libamd-comgr2:arm64. 312s Preparing to unpack .../25-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 312s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 312s Selecting previously unselected package libdrm-amdgpu1:arm64. 312s Preparing to unpack .../26-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 312s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 312s Selecting previously unselected package libhsakmt1:arm64. 312s Preparing to unpack .../27-libhsakmt1_5.7.0-1_arm64.deb ... 312s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 312s Selecting previously unselected package libhsa-runtime64-1. 312s Preparing to unpack .../28-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 312s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 312s Selecting previously unselected package libamdhip64-5. 312s Preparing to unpack .../29-libamdhip64-5_5.2.3-12_arm64.deb ... 312s Unpacking libamdhip64-5 (5.2.3-12) ... 312s Selecting previously unselected package libucx0:arm64. 312s Preparing to unpack .../30-libucx0_1.16.0+ds-4_arm64.deb ... 312s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 312s Selecting previously unselected package libopenmpi3:arm64. 312s Preparing to unpack .../31-libopenmpi3_4.1.6-5ubuntu1_arm64.deb ... 312s Unpacking libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 312s Selecting previously unselected package libxc9:arm64. 312s Preparing to unpack .../32-libxc9_5.2.3-1ubuntu1_arm64.deb ... 312s Unpacking libxc9:arm64 (5.2.3-1ubuntu1) ... 313s Selecting previously unselected package openmpi-common. 313s Preparing to unpack .../33-openmpi-common_4.1.6-5ubuntu1_all.deb ... 313s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 313s Selecting previously unselected package openmpi-bin. 313s Preparing to unpack .../34-openmpi-bin_4.1.6-5ubuntu1_arm64.deb ... 313s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 313s Selecting previously unselected package mpi-default-bin. 313s Preparing to unpack .../35-mpi-default-bin_1.15_arm64.deb ... 313s Unpacking mpi-default-bin (1.15) ... 313s Selecting previously unselected package abinit. 313s Preparing to unpack .../36-abinit_9.10.4-2ubuntu1_arm64.deb ... 313s Unpacking abinit (9.10.4-2ubuntu1) ... 314s Selecting previously unselected package abinit-data. 314s Preparing to unpack .../37-abinit-data_9.10.4-2ubuntu1_all.deb ... 314s Unpacking abinit-data (9.10.4-2ubuntu1) ... 314s Selecting previously unselected package abinit-doc. 314s Preparing to unpack .../38-abinit-doc_9.10.4-2ubuntu1_all.deb ... 314s Unpacking abinit-doc (9.10.4-2ubuntu1) ... 314s Selecting previously unselected package python3-dateutil. 314s Preparing to unpack .../39-python3-dateutil_2.8.2-3_all.deb ... 314s Unpacking python3-dateutil (2.8.2-3) ... 315s Selecting previously unselected package python3-numpy. 315s Preparing to unpack .../40-python3-numpy_1%3a1.24.2-2_arm64.deb ... 315s Unpacking python3-numpy (1:1.24.2-2) ... 315s Selecting previously unselected package python3-pandas-lib:arm64. 315s Preparing to unpack .../41-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_arm64.deb ... 315s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 315s Selecting previously unselected package python3-pandas. 315s Preparing to unpack .../42-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 315s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 315s Selecting previously unselected package autopkgtest-satdep. 315s Preparing to unpack .../43-1-autopkgtest-satdep.deb ... 315s Unpacking autopkgtest-satdep (0) ... 315s Setting up libpciaccess0:arm64 (0.17-3) ... 315s Setting up abinit-doc (9.10.4-2ubuntu1) ... 315s Setting up abinit-data (9.10.4-2ubuntu1) ... 315s Setting up libaec0:arm64 (1.1.2-1) ... 315s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 315s Setting up libblas3:arm64 (3.12.0-3) ... 315s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 315s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 315s Setting up libhwloc15:arm64 (2.10.0-1) ... 315s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 315s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 315s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 315s Setting up openmpi-common (4.1.6-5ubuntu1) ... 315s Setting up librdmacm1t64:arm64 (50.0-2) ... 315s Setting up python3-dateutil (2.8.2-3) ... 315s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 315s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 315s Setting up libsz2:arm64 (1.1.2-1) ... 315s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 315s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 315s Setting up libxc9:arm64 (5.2.3-1ubuntu1) ... 315s Setting up python3.11-minimal (3.11.8-1) ... 316s Setting up libfabric1:arm64 (1.17.0-3build1) ... 316s Setting up liblapack3:arm64 (3.12.0-3) ... 316s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 316s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 316s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 316s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 316s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 316s Setting up libhsakmt1:arm64 (5.7.0-1) ... 316s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 316s Setting up python3.11 (3.11.8-1) ... 317s Setting up libpmix2:arm64 (5.0.1-4) ... 317s Setting up python3-numpy (1:1.24.2-2) ... 319s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 319s Setting up libhsa-runtime64-1 (5.7.1-1) ... 319s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 319s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 322s Setting up libamdhip64-5 (5.2.3-12) ... 322s Setting up libnetcdff7:arm64 (4.6.0+really4.5.4+ds-3) ... 322s Setting up libucx0:arm64 (1.16.0+ds-4) ... 323s Setting up libopenmpi3:arm64 (4.1.6-5ubuntu1) ... 323s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 323s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 323s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 323s Setting up mpi-default-bin (1.15) ... 323s Setting up abinit (9.10.4-2ubuntu1) ... 323s Setting up autopkgtest-satdep (0) ... 323s Processing triggers for systemd (255.2-3ubuntu2) ... 323s Processing triggers for man-db (2.12.0-3) ... 323s Processing triggers for libc-bin (2.39-0ubuntu6) ... 329s (Reading database ... 79492 files and directories currently installed.) 329s Removing autopkgtest-satdep (0) ... 329s autopkgtest [02:20:13]: test run-unit-test: [----------------------- 330s /tmp/autopkgtest.kIz9im/build.bSl/src/tests/__init__.py:231: SyntaxWarning: invalid escape sequence '\d' 330s pattern = re.compile("-?t" + name + "_\d+\.abi") 330s /tmp/autopkgtest.kIz9im/build.bSl/src/tests/__init__.py:722: SyntaxWarning: invalid escape sequence '\[' 330s re_slice = re.compile("^\[(\d*):(\d*)\]$") 330s /tmp/autopkgtest.kIz9im/build.bSl/src/tests/__init__.py:723: SyntaxWarning: invalid escape sequence '\[' 330s re_single = re.compile("^\[(\d*)\]$") 330s /tmp/autopkgtest.kIz9im/build.bSl/src/tests/pymods/xyaptu.py:37: SyntaxWarning: invalid escape sequence '\+' 330s _reOpen = re.compile('\++yaptu ') 330s /tmp/autopkgtest.kIz9im/build.bSl/src/tests/pymods/yaptu.py:96: SyntaxWarning: invalid escape sequence '\+' 330s rbe=re.compile('\+') 331s stty: 'standard input': Inappropriate ioctl for device 362s Running on autopkgtest -- system Linux -- ncpus 2 -- Python 3.12.2 -- runtests.py-0.6.0 362s Regenerating database... 362s Saving database to /tmp/autopkgtest.kIz9im/build.bSl/src/tests/test_suite.cpkl 362s /tmp/tmp.1TPf19kkDb directory already exists. Files will be removed 362s Running 26 test(s) with MPI_procs: 1, py_nprocs: 1 362s [fast][t00][np=1][run_etime: 1.47 s]: succeeded [file=t00.abo] 362s [fast][t01][np=1][run_etime: 0.32 s]: succeeded [file=t01.abo] 362s [fast][t02][np=1][run_etime: 1.09 s]: succeeded [file=t02.abo] 362s [fast][t03][np=1][run_etime: 0.86 s]: succeeded [file=t03.abo] 362s [fast][t05][np=1][run_etime: 0.55 s]: succeeded [file=t05.abo] 362s [fast][t06][np=1][run_etime: 0.52 s]: succeeded [file=t06.abo] 362s [fast][t07][np=1][run_etime: 0.66 s]: succeeded [file=t07.abo] 362s [fast][t08][np=1][run_etime: 0.52 s]: succeeded [file=t08.abo] 362s [fast][t09][np=1][run_etime: 0.48 s]: succeeded [file=t09.abo] 362s [fast][t11][np=1][run_etime: 0.52 s]: succeeded [file=t11.abo] 362s [fast][t12][np=1][run_etime: 0.48 s]: succeeded [file=t12.abo] 362s [fast][t14][np=1][run_etime: 0.64 s]: passed: abs error 9.999e-07 < 1.1e-06, rel error 0.0003729 < 0.0004 [file=t14.abo] 362s [fast][t16][np=1][run_etime: 0.54 s]: succeeded [file=t16.abo] 362s [fast][t04][np=1][run_etime: 0.61 s]: succeeded [file=t04.abo] 362s [fast][t17][np=1][run_etime: 0.67 s]: succeeded [file=t17.abo] 362s [fast][t19][np=1][run_etime: 0.70 s]: succeeded [file=t19.abo] 362s [fast][t20][np=1][run_etime: 1.66 s]: succeeded [file=t20.abo] 362s [fast][t21][np=1][run_etime: 3.83 s]: succeeded [file=t21.abo] 362s [fast][t23][np=1][run_etime: 0.86 s]: succeeded [file=t23.abo] 362s [fast][t24][np=1][run_etime: 1.24 s]: succeeded [file=t24.abo] 362s [fast][t25][np=1][run_etime: 1.05 s]: succeeded [file=t25.abo] 362s [fast][t26][np=1][run_etime: 1.03 s]: succeeded [file=t26.abo] 362s [fast][t27][np=1][run_etime: 1.17 s]: succeeded [file=t27.abo] 362s [fast][t28][np=1][run_etime: 1.99 s]: succeeded [file=t28.abo] 362s [fast][t28][np=1][run_etime: 1.99 s]: succeeded [file=t28o_TIM2_GEO] 362s [fast][t29][np=1][run_etime: 5.41 s]: succeeded [file=t29.abo] 362s [fast][t29][np=1][run_etime: 5.41 s]: succeeded [file=t29o_TIM8_GEO] 362s [fast][t30][np=1][run_etime: 0.69 s]: succeeded [file=t30.abo] 362s 362s Suite failed passed succeeded skipped disabled run_etime tot_etime 362s fast 0 1 10 0 0 29.56 29.78 362s 362s Completed in 30.08 [s]. Average time for test=2.69 [s], stdev=2.94 [s] 362s Summary: failed=0, succeeded=10, passed=1, skipped=0, disabled=0 362s 362s Execution completed. 362s Results in HTML format are available in /tmp/tmp.1TPf19kkDb/suite_report.html 363s autopkgtest [02:20:47]: test run-unit-test: -----------------------] 363s autopkgtest [02:20:47]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 363s run-unit-test PASS 364s autopkgtest [02:20:48]: @@@@@@@@@@@@@@@@@@@@ summary 364s run-unit-test PASS 368s Creating nova instance adt-noble-arm64-abinit-20240324-021444-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240323.img (UUID 375bc181-4f1c-404a-9515-ae86628c71e3)...