0s autopkgtest [11:55:44]: starting date: 2024-03-18 0s autopkgtest [11:55:44]: git checkout: 399018f5 lib/adt_testbed.py: Fix supression of warning messages from apt 0s autopkgtest [11:55:44]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8w3uqv3r/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:openmpi,src:ampliconnoise,src:eztrace,src:gatb-core,src:gyoto,src:murasaki,src:pmix --apt-upgrade abinit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openmpi/4.1.6-7ubuntu1 ampliconnoise/1.29-10build2 eztrace/2.1-6 gatb-core/1.4.2+dfsg-13build1 gyoto/2.0.2-1.1build2 murasaki/1.68.6-13build5 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-9.secgroup --name adt-noble-arm64-abinit-20240318-115544-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 77s autopkgtest [11:57:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 77s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 78s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3727 kB] 78s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 78s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 78s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 78s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [654 kB] 78s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 78s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 78s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 78s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4127 kB] 78s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 78s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.3 kB] 78s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 80s Fetched 9270 kB in 2s (4726 kB/s) 80s Reading package lists... 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 84s Calculating upgrade... 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 86s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 86s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 86s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 88s Reading package lists... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s Calculating upgrade... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s autopkgtest [11:57:14]: testbed dpkg architecture: arm64 92s autopkgtest [11:57:16]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 92s autopkgtest [11:57:16]: @@@@@@@@@@@@@@@@@@@@ apt-source abinit 99s Get:1 http://ftpmaster.internal/ubuntu noble/universe abinit 9.10.4-2ubuntu1 (dsc) [2608 B] 99s Get:2 http://ftpmaster.internal/ubuntu noble/universe abinit 9.10.4-2ubuntu1 (tar) [131 MB] 99s Get:3 http://ftpmaster.internal/ubuntu noble/universe abinit 9.10.4-2ubuntu1 (diff) [15.0 kB] 100s gpgv: Signature made Mon Jan 22 02:27:00 2024 UTC 100s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 100s gpgv: issuer "steve.langasek@ubuntu.com" 100s gpgv: Can't check signature: No public key 100s dpkg-source: warning: cannot verify inline signature for ./abinit_9.10.4-2ubuntu1.dsc: no acceptable signature found 107s autopkgtest [11:57:31]: testing package abinit version 9.10.4-2ubuntu1 107s autopkgtest [11:57:31]: build not needed 127s autopkgtest [11:57:51]: test run-unit-test: preparing testbed 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 132s Done 133s Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 133s The following additional packages will be installed: 133s abinit abinit-data abinit-doc libaec0 libamd-comgr2 libamdhip64-5 libatomic1 133s libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libgfortran5 133s libhdf5-103-1 libhdf5-hl-100 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins 133s libhwloc15 liblapack3 libllvm17 libmunge2 libnetcdf19 libnetcdff7 133s libopenmpi3t64 libpciaccess0 libpmix2t64 libpython3.11-minimal 133s libpython3.11-stdlib librdmacm1t64 libsz2 libucx0 libxc9 libxnvctrl0 133s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 133s python3-dateutil python3-numpy python3-pandas python3-pandas-lib python3.11 133s python3.11-minimal 133s Suggested packages: 133s opencl-icd gfortran | fortran-compiler gcc gfortran python3-dev 133s python3-pytest python-pandas-doc python3-statsmodels python3.11-venv 133s python3.11-doc binfmt-support 133s Recommended packages: 133s python3-scipy python3-matplotlib python3-bottleneck python3-numexpr 133s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 133s python3-tables 133s The following NEW packages will be installed: 133s abinit abinit-data abinit-doc libaec0 libamd-comgr2 libamdhip64-5 libatomic1 133s libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libgfortran5 133s libhdf5-103-1 libhdf5-hl-100 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins 133s libhwloc15 liblapack3 libllvm17 libmunge2 libnetcdf19 libnetcdff7 133s libopenmpi3t64 libpciaccess0 libpmix2t64 libpython3.11-minimal 133s libpython3.11-stdlib librdmacm1t64 libsz2 libucx0 libxc9 libxnvctrl0 133s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 133s python3-dateutil python3-numpy python3-pandas python3-pandas-lib python3.11 133s python3.11-minimal 134s 0 upgraded, 43 newly installed, 0 to remove and 0 not upgraded. 134s 1 not fully installed or removed. 134s Need to get 147 MB of archives. 134s After this operation, 668 MB of additional disk space will be used. 134s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 134s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 134s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 134s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 134s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 134s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 134s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 134s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 134s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdff7 arm64 4.6.0+really4.5.4+ds-3 [130 kB] 134s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-9 [7738 B] 134s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 134s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 librdmacm1t64 arm64 50.0-2 [70.6 kB] 134s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libfabric1 arm64 1.17.0-3 [537 kB] 134s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc15 arm64 2.10.0-1 [158 kB] 134s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 libmunge2 arm64 0.5.15-3ubuntu1 [14.8 kB] 134s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libpciaccess0 arm64 0.17-3 [18.6 kB] 134s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu1 [11.1 kB] 134s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1 [37.3 kB] 134s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 libhwloc-plugins arm64 2.10.0-1 [15.7 kB] 134s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libpmix2t64 arm64 5.0.1-4.1 [655 kB] 134s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 135s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3 [14.1 MB] 135s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 135s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsakmt1 arm64 5.7.0-1 [63.6 kB] 135s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libhsa-runtime64-1 arm64 5.7.1-1 [286 kB] 135s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 libamdhip64-5 arm64 5.2.3-12 [5134 kB] 135s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libucx0 arm64 1.16.0+ds-4 [1076 kB] 135s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libopenmpi3t64 arm64 4.1.6-7ubuntu1 [2463 kB] 135s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libxc9 arm64 5.2.3-1ubuntu1 [4109 kB] 136s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-common all 4.1.6-7ubuntu1 [170 kB] 136s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 openmpi-bin arm64 4.1.6-7ubuntu1 [113 kB] 136s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 mpi-default-bin arm64 1.15 [2336 B] 136s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 abinit arm64 9.10.4-2ubuntu1 [30.5 MB] 136s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 abinit-doc all 9.10.4-2ubuntu1 [2301 kB] 136s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 abinit-data all 9.10.4-2ubuntu1 [34.2 MB] 137s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-minimal arm64 3.11.8-1 [837 kB] 137s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11-minimal arm64 3.11.8-1 [2150 kB] 138s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.11-stdlib arm64 3.11.8-1 [1913 kB] 138s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 python3.11 arm64 3.11.8-1 [589 kB] 138s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 138s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 138s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas-lib arm64 2.1.4+dfsg-4ubuntu2 [7669 kB] 138s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 139s Fetched 147 MB in 5s (32.4 MB/s) 139s Selecting previously unselected package libblas3:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 139s Preparing to unpack .../00-libblas3_3.12.0-3_arm64.deb ... 139s Unpacking libblas3:arm64 (3.12.0-3) ... 139s Selecting previously unselected package libgfortran5:arm64. 139s Preparing to unpack .../01-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 139s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package liblapack3:arm64. 139s Preparing to unpack .../02-liblapack3_3.12.0-3_arm64.deb ... 139s Unpacking liblapack3:arm64 (3.12.0-3) ... 139s Selecting previously unselected package libaec0:arm64. 139s Preparing to unpack .../03-libaec0_1.1.2-1_arm64.deb ... 139s Unpacking libaec0:arm64 (1.1.2-1) ... 139s Selecting previously unselected package libsz2:arm64. 140s Preparing to unpack .../04-libsz2_1.1.2-1_arm64.deb ... 140s Unpacking libsz2:arm64 (1.1.2-1) ... 140s Selecting previously unselected package libhdf5-103-1:arm64. 140s Preparing to unpack .../05-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 140s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 140s Selecting previously unselected package libhdf5-hl-100:arm64. 140s Preparing to unpack .../06-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 140s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 140s Selecting previously unselected package libnetcdf19:arm64. 140s Preparing to unpack .../07-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 140s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 140s Selecting previously unselected package libnetcdff7:arm64. 140s Preparing to unpack .../08-libnetcdff7_4.6.0+really4.5.4+ds-3_arm64.deb ... 140s Unpacking libnetcdff7:arm64 (4.6.0+really4.5.4+ds-3) ... 140s Selecting previously unselected package libevent-pthreads-2.1-7:arm64. 140s Preparing to unpack .../09-libevent-pthreads-2.1-7_2.1.12-stable-9_arm64.deb ... 140s Unpacking libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 140s Selecting previously unselected package libatomic1:arm64. 140s Preparing to unpack .../10-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package librdmacm1t64:arm64. 140s Preparing to unpack .../11-librdmacm1t64_50.0-2_arm64.deb ... 140s Unpacking librdmacm1t64:arm64 (50.0-2) ... 140s Selecting previously unselected package libfabric1:arm64. 141s Preparing to unpack .../12-libfabric1_1.17.0-3_arm64.deb ... 141s Unpacking libfabric1:arm64 (1.17.0-3) ... 141s Selecting previously unselected package libhwloc15:arm64. 141s Preparing to unpack .../13-libhwloc15_2.10.0-1_arm64.deb ... 141s Unpacking libhwloc15:arm64 (2.10.0-1) ... 141s Selecting previously unselected package libmunge2:arm64. 141s Preparing to unpack .../14-libmunge2_0.5.15-3ubuntu1_arm64.deb ... 141s Unpacking libmunge2:arm64 (0.5.15-3ubuntu1) ... 141s Selecting previously unselected package libpciaccess0:arm64. 141s Preparing to unpack .../15-libpciaccess0_0.17-3_arm64.deb ... 141s Unpacking libpciaccess0:arm64 (0.17-3) ... 141s Selecting previously unselected package libxnvctrl0:arm64. 141s Preparing to unpack .../16-libxnvctrl0_510.47.03-0ubuntu1_arm64.deb ... 141s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 141s Selecting previously unselected package ocl-icd-libopencl1:arm64. 141s Preparing to unpack .../17-ocl-icd-libopencl1_2.3.2-1_arm64.deb ... 141s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1) ... 141s Selecting previously unselected package libhwloc-plugins:arm64. 141s Preparing to unpack .../18-libhwloc-plugins_2.10.0-1_arm64.deb ... 141s Unpacking libhwloc-plugins:arm64 (2.10.0-1) ... 141s Selecting previously unselected package libpmix2t64:arm64. 141s Preparing to unpack .../19-libpmix2t64_5.0.1-4.1_arm64.deb ... 141s Unpacking libpmix2t64:arm64 (5.0.1-4.1) ... 141s Selecting previously unselected package libllvm17:arm64. 141s Preparing to unpack .../20-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 141s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 143s Selecting previously unselected package libamd-comgr2:arm64. 143s Preparing to unpack .../21-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_arm64.deb ... 143s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 143s Selecting previously unselected package libdrm-amdgpu1:arm64. 143s Preparing to unpack .../22-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 143s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 143s Selecting previously unselected package libhsakmt1:arm64. 143s Preparing to unpack .../23-libhsakmt1_5.7.0-1_arm64.deb ... 144s Unpacking libhsakmt1:arm64 (5.7.0-1) ... 144s Selecting previously unselected package libhsa-runtime64-1. 144s Preparing to unpack .../24-libhsa-runtime64-1_5.7.1-1_arm64.deb ... 144s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 144s Selecting previously unselected package libamdhip64-5. 144s Preparing to unpack .../25-libamdhip64-5_5.2.3-12_arm64.deb ... 144s Unpacking libamdhip64-5 (5.2.3-12) ... 144s Selecting previously unselected package libucx0:arm64. 144s Preparing to unpack .../26-libucx0_1.16.0+ds-4_arm64.deb ... 144s Unpacking libucx0:arm64 (1.16.0+ds-4) ... 144s Selecting previously unselected package libopenmpi3t64:arm64. 144s Preparing to unpack .../27-libopenmpi3t64_4.1.6-7ubuntu1_arm64.deb ... 144s Unpacking libopenmpi3t64:arm64 (4.1.6-7ubuntu1) ... 144s Selecting previously unselected package libxc9:arm64. 144s Preparing to unpack .../28-libxc9_5.2.3-1ubuntu1_arm64.deb ... 144s Unpacking libxc9:arm64 (5.2.3-1ubuntu1) ... 144s Selecting previously unselected package openmpi-common. 144s Preparing to unpack .../29-openmpi-common_4.1.6-7ubuntu1_all.deb ... 144s Unpacking openmpi-common (4.1.6-7ubuntu1) ... 144s Selecting previously unselected package openmpi-bin. 144s Preparing to unpack .../30-openmpi-bin_4.1.6-7ubuntu1_arm64.deb ... 144s Unpacking openmpi-bin (4.1.6-7ubuntu1) ... 144s Selecting previously unselected package mpi-default-bin. 144s Preparing to unpack .../31-mpi-default-bin_1.15_arm64.deb ... 144s Unpacking mpi-default-bin (1.15) ... 144s Selecting previously unselected package abinit. 144s Preparing to unpack .../32-abinit_9.10.4-2ubuntu1_arm64.deb ... 144s Unpacking abinit (9.10.4-2ubuntu1) ... 145s Selecting previously unselected package abinit-doc. 145s Preparing to unpack .../33-abinit-doc_9.10.4-2ubuntu1_all.deb ... 145s Unpacking abinit-doc (9.10.4-2ubuntu1) ... 145s Selecting previously unselected package abinit-data. 145s Preparing to unpack .../34-abinit-data_9.10.4-2ubuntu1_all.deb ... 145s Unpacking abinit-data (9.10.4-2ubuntu1) ... 146s Selecting previously unselected package libpython3.11-minimal:arm64. 146s Preparing to unpack .../35-libpython3.11-minimal_3.11.8-1_arm64.deb ... 146s Unpacking libpython3.11-minimal:arm64 (3.11.8-1) ... 146s Selecting previously unselected package python3.11-minimal. 146s Preparing to unpack .../36-python3.11-minimal_3.11.8-1_arm64.deb ... 146s Unpacking python3.11-minimal (3.11.8-1) ... 146s Selecting previously unselected package libpython3.11-stdlib:arm64. 146s Preparing to unpack .../37-libpython3.11-stdlib_3.11.8-1_arm64.deb ... 146s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1) ... 146s Selecting previously unselected package python3.11. 146s Preparing to unpack .../38-python3.11_3.11.8-1_arm64.deb ... 146s Unpacking python3.11 (3.11.8-1) ... 147s Selecting previously unselected package python3-numpy. 147s Preparing to unpack .../39-python3-numpy_1%3a1.24.2-2_arm64.deb ... 147s Unpacking python3-numpy (1:1.24.2-2) ... 147s Selecting previously unselected package python3-dateutil. 147s Preparing to unpack .../40-python3-dateutil_2.8.2-3_all.deb ... 147s Unpacking python3-dateutil (2.8.2-3) ... 147s Selecting previously unselected package python3-pandas-lib:arm64. 147s Preparing to unpack .../41-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_arm64.deb ... 147s Unpacking python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 148s Selecting previously unselected package python3-pandas. 148s Preparing to unpack .../42-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 148s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 148s Setting up libpciaccess0:arm64 (0.17-3) ... 148s Setting up abinit-doc (9.10.4-2ubuntu1) ... 148s Setting up abinit-data (9.10.4-2ubuntu1) ... 148s Setting up libaec0:arm64 (1.1.2-1) ... 148s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu1) ... 148s Setting up libblas3:arm64 (3.12.0-3) ... 148s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 148s Setting up libmunge2:arm64 (0.5.15-3ubuntu1) ... 148s Setting up libhwloc15:arm64 (2.10.0-1) ... 148s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 148s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 148s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1) ... 148s Setting up openmpi-common (4.1.6-7ubuntu1) ... 148s Setting up librdmacm1t64:arm64 (50.0-2) ... 148s Setting up python3-dateutil (2.8.2-3) ... 148s Setting up libpython3.11-minimal:arm64 (3.11.8-1) ... 148s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 148s Setting up libsz2:arm64 (1.1.2-1) ... 148s Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-9) ... 148s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 148s Setting up libxc9:arm64 (5.2.3-1ubuntu1) ... 148s Setting up python3.11-minimal (3.11.8-1) ... 149s Setting up libfabric1:arm64 (1.17.0-3) ... 149s Setting up liblapack3:arm64 (3.12.0-3) ... 149s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 149s Setting up libpython3.11-stdlib:arm64 (3.11.8-1) ... 149s Setting up libhwloc-plugins:arm64 (2.10.0-1) ... 149s Setting up libpmix2t64:arm64 (5.0.1-4.1) ... 149s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 149s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3) ... 149s Setting up libhsakmt1:arm64 (5.7.0-1) ... 149s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 149s Setting up python3.11 (3.11.8-1) ... 150s Setting up python3-numpy (1:1.24.2-2) ... 152s Setting up libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 152s Setting up libhsa-runtime64-1 (5.7.1-1) ... 152s Setting up python3-pandas-lib:arm64 (2.1.4+dfsg-4ubuntu2) ... 152s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 156s Setting up libamdhip64-5 (5.2.3-12) ... 156s Setting up libnetcdff7:arm64 (4.6.0+really4.5.4+ds-3) ... 156s Setting up libucx0:arm64 (1.16.0+ds-4) ... 156s Setting up libopenmpi3t64:arm64 (4.1.6-7ubuntu1) ... 156s Setting up openmpi-bin (4.1.6-7ubuntu1) ... 156s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 156s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 156s Setting up mpi-default-bin (1.15) ... 156s Setting up abinit (9.10.4-2ubuntu1) ... 156s Setting up autopkgtest-satdep (0) ... 156s Processing triggers for systemd (255.2-3ubuntu2) ... 156s Processing triggers for man-db (2.12.0-3) ... 157s Processing triggers for libc-bin (2.39-0ubuntu2) ... 163s (Reading database ... 79875 files and directories currently installed.) 163s Removing autopkgtest-satdep (0) ... 164s autopkgtest [11:58:28]: test run-unit-test: [----------------------- 165s /tmp/autopkgtest.Q5Dqh6/build.Iz6/src/tests/__init__.py:231: SyntaxWarning: invalid escape sequence '\d' 165s pattern = re.compile("-?t" + name + "_\d+\.abi") 165s /tmp/autopkgtest.Q5Dqh6/build.Iz6/src/tests/__init__.py:722: SyntaxWarning: invalid escape sequence '\[' 165s re_slice = re.compile("^\[(\d*):(\d*)\]$") 165s /tmp/autopkgtest.Q5Dqh6/build.Iz6/src/tests/__init__.py:723: SyntaxWarning: invalid escape sequence '\[' 165s re_single = re.compile("^\[(\d*)\]$") 165s /tmp/autopkgtest.Q5Dqh6/build.Iz6/src/tests/pymods/xyaptu.py:37: SyntaxWarning: invalid escape sequence '\+' 165s _reOpen = re.compile('\++yaptu ') 165s /tmp/autopkgtest.Q5Dqh6/build.Iz6/src/tests/pymods/yaptu.py:96: SyntaxWarning: invalid escape sequence '\+' 165s rbe=re.compile('\+') 167s stty: 'standard input': Inappropriate ioctl for device 199s Running on autopkgtest -- system Linux -- ncpus 2 -- Python 3.12.2 -- runtests.py-0.6.0 199s Regenerating database... 199s Saving database to /tmp/autopkgtest.Q5Dqh6/build.Iz6/src/tests/test_suite.cpkl 199s /tmp/tmp.cXP7CQlD7H directory already exists. Files will be removed 199s Running 26 test(s) with MPI_procs: 1, py_nprocs: 1 199s [fast][t00][np=1][run_etime: 2.07 s]: succeeded [file=t00.abo] 199s [fast][t01][np=1][run_etime: 0.41 s]: succeeded [file=t01.abo] 199s [fast][t02][np=1][run_etime: 0.90 s]: succeeded [file=t02.abo] 199s [fast][t03][np=1][run_etime: 0.77 s]: succeeded [file=t03.abo] 199s [fast][t05][np=1][run_etime: 0.55 s]: succeeded [file=t05.abo] 199s [fast][t06][np=1][run_etime: 0.50 s]: succeeded [file=t06.abo] 199s [fast][t07][np=1][run_etime: 0.56 s]: succeeded [file=t07.abo] 199s [fast][t08][np=1][run_etime: 0.51 s]: succeeded [file=t08.abo] 199s [fast][t09][np=1][run_etime: 0.47 s]: succeeded [file=t09.abo] 199s [fast][t11][np=1][run_etime: 0.75 s]: succeeded [file=t11.abo] 199s [fast][t12][np=1][run_etime: 0.53 s]: succeeded [file=t12.abo] 199s [fast][t14][np=1][run_etime: 0.54 s]: passed: abs error 9.999e-07 < 1.1e-06, rel error 0.0003729 < 0.0004 [file=t14.abo] 199s [fast][t16][np=1][run_etime: 0.55 s]: succeeded [file=t16.abo] 199s [fast][t04][np=1][run_etime: 0.73 s]: succeeded [file=t04.abo] 199s [fast][t17][np=1][run_etime: 0.68 s]: succeeded [file=t17.abo] 199s [fast][t19][np=1][run_etime: 0.71 s]: succeeded [file=t19.abo] 199s [fast][t20][np=1][run_etime: 1.64 s]: succeeded [file=t20.abo] 199s [fast][t21][np=1][run_etime: 4.04 s]: succeeded [file=t21.abo] 199s [fast][t23][np=1][run_etime: 0.81 s]: succeeded [file=t23.abo] 199s [fast][t24][np=1][run_etime: 1.31 s]: succeeded [file=t24.abo] 199s [fast][t25][np=1][run_etime: 1.07 s]: succeeded [file=t25.abo] 199s [fast][t26][np=1][run_etime: 1.07 s]: succeeded [file=t26.abo] 199s [fast][t27][np=1][run_etime: 1.20 s]: succeeded [file=t27.abo] 199s [fast][t28][np=1][run_etime: 2.22 s]: succeeded [file=t28.abo] 199s [fast][t28][np=1][run_etime: 2.22 s]: succeeded [file=t28o_TIM2_GEO] 199s [fast][t29][np=1][run_etime: 5.58 s]: succeeded [file=t29.abo] 199s [fast][t29][np=1][run_etime: 5.58 s]: succeeded [file=t29o_TIM8_GEO] 199s [fast][t30][np=1][run_etime: 0.91 s]: succeeded [file=t30.abo] 199s 199s Suite failed passed succeeded skipped disabled run_etime tot_etime 199s fast 0 1 10 0 0 31.11 31.46 199s 199s Completed in 31.80 [s]. Average time for test=2.83 [s], stdev=3.00 [s] 199s Summary: failed=0, succeeded=10, passed=1, skipped=0, disabled=0 199s 199s Execution completed. 199s Results in HTML format are available in /tmp/tmp.cXP7CQlD7H/suite_report.html 201s autopkgtest [11:59:05]: test run-unit-test: -----------------------] 201s autopkgtest [11:59:05]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 201s run-unit-test PASS 202s autopkgtest [11:59:06]: @@@@@@@@@@@@@@@@@@@@ summary 202s run-unit-test PASS 214s Creating nova instance adt-noble-arm64-abinit-20240318-115544-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240318.img (UUID 6b9ea2ac-1792-4f95-a56d-e128e96ab6e9)...