0s autopkgtest [13:56:42]: starting date and time: 2024-03-20 13:56:42+0000 0s autopkgtest [13:56:42]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [13:56:42]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.95swiq0g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-rcpparmadillo --apt-upgrade r-cran-sctransform --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rcpparmadillo/0.12.8.1.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-35.secgroup --name adt-noble-amd64-r-cran-sctransform-20240320-135641-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 132s autopkgtest [13:58:54]: testbed dpkg architecture: amd64 132s autopkgtest [13:58:54]: testbed apt version: 2.7.12 132s autopkgtest [13:58:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 132s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 133s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB] 133s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 133s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3804 kB] 133s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 133s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [452 kB] 133s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [697 kB] 133s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 133s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 133s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [36.6 kB] 133s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 133s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1334 kB] 133s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4297 kB] 133s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 133s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [16.2 kB] 133s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [67.2 kB] 133s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 136s Fetched 11.4 MB in 1s (8496 kB/s) 136s Reading package lists... 137s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade... 138s The following packages will be upgraded: 138s ubuntu-minimal ubuntu-standard 138s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Need to get 21.5 kB of archives. 138s After this operation, 0 B of additional disk space will be used. 138s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-minimal amd64 1.536build1 [10.7 kB] 138s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-standard amd64 1.536build1 [10.7 kB] 138s Fetched 21.5 kB in 0s (1366 kB/s) 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 139s Preparing to unpack .../ubuntu-minimal_1.536build1_amd64.deb ... 139s Unpacking ubuntu-minimal (1.536build1) over (1.536) ... 139s Preparing to unpack .../ubuntu-standard_1.536build1_amd64.deb ... 139s Unpacking ubuntu-standard (1.536build1) over (1.536) ... 139s Setting up ubuntu-minimal (1.536build1) ... 139s Setting up ubuntu-standard (1.536build1) ... 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 140s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 140s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 140s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 141s Reading package lists... 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s Calculating upgrade... 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s autopkgtest [13:59:05]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 143s autopkgtest [13:59:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sctransform 144s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-sctransform 0.4.1-1 (dsc) [2408 B] 144s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-sctransform 0.4.1-1 (tar) [198 kB] 144s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-sctransform 0.4.1-1 (diff) [2988 B] 144s gpgv: Signature made Wed Nov 1 07:12:04 2023 UTC 144s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 144s gpgv: issuer "tille@debian.org" 144s gpgv: Can't check signature: No public key 144s dpkg-source: warning: cannot verify inline signature for ./r-cran-sctransform_0.4.1-1.dsc: no acceptable signature found 144s autopkgtest [13:59:06]: testing package r-cran-sctransform version 0.4.1-1 144s autopkgtest [13:59:06]: build not needed 145s autopkgtest [13:59:07]: test run-unit-test: preparing testbed 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 147s The following additional packages will be installed: 147s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 147s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 147s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 147s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 147s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 147s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 147s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 147s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 147s libxft2 libxrender1 libxss1 libxt6 littler node-normalize.css r-base-core 147s r-cran-brio r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace 147s r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 147s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fs r-cran-future 147s r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals 147s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-irlba 147s r-cran-isoband r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lattice 147s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mass 147s r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme 147s r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 147s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx 147s r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 147s r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-scales 147s r-cran-sctransform r-cran-stringi r-cran-stringr r-cran-testthat 147s r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite 147s r-cran-waldo r-cran-withr r-cran-xfun r-cran-yaml unzip x11-common xdg-utils 147s zip 147s Suggested packages: 147s fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 147s libjs-html5shiv elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 147s r-cran-covr r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm 147s r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-png r-cran-jpeg 147s r-cran-rmarkdown r-cran-viridis r-cran-rstudioapi r-cran-markdown 147s r-cran-magick r-cran-sf r-cran-getopt r-cran-bit64 r-cran-dbi 147s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival 147s r-cran-units r-cran-vdiffr r-cran-inline r-cran-bench r-cran-blob 147s r-cran-here r-cran-hms r-cran-htmltools r-cran-purrr r-cran-tidyr 147s Recommended packages: 147s javascript-common r-recommended r-base-dev r-doc-html r-cran-covr 147s r-cran-cliapp r-cran-mockery r-cran-htmltools r-cran-htmlwidgets 147s r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-gh r-cran-spelling 147s r-cran-bench r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-lobstr 147s r-cran-purrr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-tidyr 147s r-cran-unitizer r-cran-rhpcblasctl r-cran-r.rsp r-cran-markdown 147s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 147s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 147s r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-testit r-cran-httr 147s r-cran-bslib r-cran-formatr r-cran-gridsvg r-cran-curl r-cran-jpeg 147s r-cran-magick r-cran-png r-cran-reticulate r-cran-rgl r-cran-sass 147s r-cran-tikzdevice r-cran-tinytex r-cran-webshot node-highlight.js 147s r-cran-lintr r-cran-tidyverse r-cran-r.utils r-cran-base64enc 147s r-cran-r.devices r-cran-lubridate r-cran-cpp11 r-cran-bitops r-cran-mathjaxr 147s r-cran-mockr r-cran-remotes r-cran-abind r-cran-doparallel r-cran-foreach 147s r-cran-iterators r-cran-itertools r-cran-webfakes r-cran-pingr 147s r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-shiny 147s r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot 147s r-cran-mime r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl 147s libx11-protocol-perl x11-utils x11-xserver-utils 147s The following NEW packages will be installed: 147s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 147s fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax libblas3 147s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 147s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 147s libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables 147s libjs-mathjax liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 147s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 147s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 147s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 littler node-normalize.css 147s r-base-core r-cran-brio r-cran-callr r-cran-cli r-cran-codetools 147s r-cran-colorspace r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest 147s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fs 147s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 147s r-cran-globals r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr 147s r-cran-irlba r-cran-isoband r-cran-jsonlite r-cran-knitr r-cran-labeling 147s r-cran-lattice r-cran-lifecycle r-cran-listenv r-cran-littler 147s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv 147s r-cran-munsell r-cran-nlme r-cran-parallelly r-cran-pillar r-cran-pkgbuild 147s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise 147s r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 147s r-cran-rcpparmadillo r-cran-rematch2 r-cran-reshape2 r-cran-rlang 147s r-cran-rprojroot r-cran-scales r-cran-sctransform r-cran-stringi 147s r-cran-stringr r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-utf8 147s r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun 147s r-cran-yaml unzip x11-common xdg-utils zip 147s 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. 147s Need to get 93.9 MB/93.9 MB of archives. 147s After this operation, 217 MB of additional disk space will be used. 147s Get:1 /tmp/autopkgtest.1p3176/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [728 B] 147s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 147s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 147s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 147s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 147s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 147s Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 147s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 147s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 147s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 147s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 147s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 147s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 147s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 147s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 147s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 147s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 147s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 147s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 147s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 147s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 147s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 147s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 147s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 147s Get:25 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 147s Get:26 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 147s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 147s Get:28 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 147s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 147s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 147s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 147s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 147s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 147s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 147s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 147s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 147s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 147s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 147s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 147s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 147s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 147s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 147s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 147s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 147s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 147s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 147s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 147s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 147s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 147s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 147s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 147s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 147s Get:53 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 147s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 147s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 147s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 147s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 147s Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 147s Get:59 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 147s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 147s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 147s Get:62 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 147s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 147s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 147s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 147s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 147s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 147s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 147s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 147s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 147s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 147s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 147s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 147s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 147s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 147s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 147s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 147s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 147s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 147s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 147s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 147s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 147s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 147s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] 148s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 148s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly amd64 1.37.1-1 [365 kB] 148s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 148s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 148s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 148s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 148s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 148s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 148s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 148s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 148s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 148s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 148s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 148s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 148s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 148s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 148s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 148s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 148s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 148s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 148s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-irlba amd64 2.3.5.1-2 [294 kB] 148s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 148s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 148s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 148s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 148s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 148s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 148s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 148s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 148s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 148s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 148s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 148s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 148s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.1.0-1 [862 kB] 148s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 148s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 148s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 148s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 148s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 148s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 148s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 148s Preconfiguring packages ... 148s Fetched 93.9 MB in 1s (119 MB/s) 148s Selecting previously unselected package fonts-dejavu-mono. 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 148s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 148s Unpacking fonts-dejavu-mono (2.37-8) ... 148s Selecting previously unselected package fonts-dejavu-core. 148s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 148s Unpacking fonts-dejavu-core (2.37-8) ... 148s Selecting previously unselected package fontconfig-config. 148s Preparing to unpack .../002-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 149s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 149s Selecting previously unselected package libfontconfig1:amd64. 149s Preparing to unpack .../003-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 149s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 149s Selecting previously unselected package fontconfig. 149s Preparing to unpack .../004-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 149s Unpacking fontconfig (2.15.0-1ubuntu1) ... 149s Selecting previously unselected package fonts-glyphicons-halflings. 149s Preparing to unpack .../005-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 149s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 149s Selecting previously unselected package fonts-mathjax. 149s Preparing to unpack .../006-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 149s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 149s Selecting previously unselected package libblas3:amd64. 149s Preparing to unpack .../007-libblas3_3.12.0-3_amd64.deb ... 149s Unpacking libblas3:amd64 (3.12.0-3) ... 149s Selecting previously unselected package libpixman-1-0:amd64. 149s Preparing to unpack .../008-libpixman-1-0_0.42.2-1_amd64.deb ... 149s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 149s Selecting previously unselected package libxcb-render0:amd64. 149s Preparing to unpack .../009-libxcb-render0_1.15-1_amd64.deb ... 149s Unpacking libxcb-render0:amd64 (1.15-1) ... 149s Selecting previously unselected package libxcb-shm0:amd64. 149s Preparing to unpack .../010-libxcb-shm0_1.15-1_amd64.deb ... 149s Unpacking libxcb-shm0:amd64 (1.15-1) ... 149s Selecting previously unselected package libxrender1:amd64. 149s Preparing to unpack .../011-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 149s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 149s Selecting previously unselected package libcairo2:amd64. 149s Preparing to unpack .../012-libcairo2_1.18.0-1_amd64.deb ... 149s Unpacking libcairo2:amd64 (1.18.0-1) ... 149s Selecting previously unselected package libdatrie1:amd64. 149s Preparing to unpack .../013-libdatrie1_0.2.13-3_amd64.deb ... 149s Unpacking libdatrie1:amd64 (0.2.13-3) ... 149s Selecting previously unselected package libdeflate0:amd64. 149s Preparing to unpack .../014-libdeflate0_1.19-1_amd64.deb ... 149s Unpacking libdeflate0:amd64 (1.19-1) ... 149s Selecting previously unselected package libgfortran5:amd64. 149s Preparing to unpack .../015-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 149s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libgomp1:amd64. 149s Preparing to unpack .../016-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 149s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libgraphite2-3:amd64. 149s Preparing to unpack .../017-libgraphite2-3_1.3.14-2_amd64.deb ... 149s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 149s Selecting previously unselected package libharfbuzz0b:amd64. 149s Preparing to unpack .../018-libharfbuzz0b_8.3.0-2_amd64.deb ... 149s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 149s Selecting previously unselected package x11-common. 149s Preparing to unpack .../019-x11-common_1%3a7.7+23ubuntu2_all.deb ... 149s Unpacking x11-common (1:7.7+23ubuntu2) ... 149s Selecting previously unselected package libice6:amd64. 149s Preparing to unpack .../020-libice6_2%3a1.0.10-1build2_amd64.deb ... 149s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 149s Selecting previously unselected package libjpeg-turbo8:amd64. 149s Preparing to unpack .../021-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 149s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 149s Selecting previously unselected package libjpeg8:amd64. 149s Preparing to unpack .../022-libjpeg8_8c-2ubuntu11_amd64.deb ... 149s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 149s Selecting previously unselected package libjs-bootstrap. 149s Preparing to unpack .../023-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 149s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 149s Selecting previously unselected package libjs-highlight.js. 149s Preparing to unpack .../024-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 149s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 149s Selecting previously unselected package libjs-jquery. 149s Preparing to unpack .../025-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 149s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 150s Selecting previously unselected package libjs-jquery-datatables. 150s Preparing to unpack .../026-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 150s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 150s Selecting previously unselected package liblapack3:amd64. 150s Preparing to unpack .../027-liblapack3_3.12.0-3_amd64.deb ... 150s Unpacking liblapack3:amd64 (3.12.0-3) ... 150s Selecting previously unselected package liblerc4:amd64. 150s Preparing to unpack .../028-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 150s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 150s Selecting previously unselected package libthai-data. 150s Preparing to unpack .../029-libthai-data_0.1.29-2_all.deb ... 150s Unpacking libthai-data (0.1.29-2) ... 150s Selecting previously unselected package libthai0:amd64. 150s Preparing to unpack .../030-libthai0_0.1.29-2_amd64.deb ... 150s Unpacking libthai0:amd64 (0.1.29-2) ... 150s Selecting previously unselected package libpango-1.0-0:amd64. 150s Preparing to unpack .../031-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 150s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 150s Selecting previously unselected package libpangoft2-1.0-0:amd64. 150s Preparing to unpack .../032-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 150s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 150s Selecting previously unselected package libpangocairo-1.0-0:amd64. 150s Preparing to unpack .../033-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 150s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 150s Selecting previously unselected package libpaper1:amd64. 150s Preparing to unpack .../034-libpaper1_1.1.29_amd64.deb ... 150s Unpacking libpaper1:amd64 (1.1.29) ... 150s Selecting previously unselected package libpaper-utils. 150s Preparing to unpack .../035-libpaper-utils_1.1.29_amd64.deb ... 150s Unpacking libpaper-utils (1.1.29) ... 150s Selecting previously unselected package libsharpyuv0:amd64. 150s Preparing to unpack .../036-libsharpyuv0_1.3.2-0.4_amd64.deb ... 150s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 150s Selecting previously unselected package libsm6:amd64. 150s Preparing to unpack .../037-libsm6_2%3a1.2.3-1build2_amd64.deb ... 150s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 150s Selecting previously unselected package libtcl8.6:amd64. 150s Preparing to unpack .../038-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 150s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 150s Selecting previously unselected package libjbig0:amd64. 150s Preparing to unpack .../039-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 150s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 150s Selecting previously unselected package libwebp7:amd64. 150s Preparing to unpack .../040-libwebp7_1.3.2-0.4_amd64.deb ... 150s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 150s Selecting previously unselected package libtiff6:amd64. 150s Preparing to unpack .../041-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 150s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 150s Selecting previously unselected package libxft2:amd64. 150s Preparing to unpack .../042-libxft2_2.3.6-1_amd64.deb ... 150s Unpacking libxft2:amd64 (2.3.6-1) ... 150s Selecting previously unselected package libxss1:amd64. 150s Preparing to unpack .../043-libxss1_1%3a1.2.3-1build2_amd64.deb ... 150s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 150s Selecting previously unselected package libtk8.6:amd64. 150s Preparing to unpack .../044-libtk8.6_8.6.13-2_amd64.deb ... 150s Unpacking libtk8.6:amd64 (8.6.13-2) ... 150s Selecting previously unselected package libxt6:amd64. 150s Preparing to unpack .../045-libxt6_1%3a1.2.1-1.1_amd64.deb ... 150s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 150s Selecting previously unselected package zip. 150s Preparing to unpack .../046-zip_3.0-13_amd64.deb ... 150s Unpacking zip (3.0-13) ... 150s Selecting previously unselected package unzip. 150s Preparing to unpack .../047-unzip_6.0-28ubuntu3_amd64.deb ... 150s Unpacking unzip (6.0-28ubuntu3) ... 150s Selecting previously unselected package xdg-utils. 150s Preparing to unpack .../048-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 150s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 150s Selecting previously unselected package r-base-core. 150s Preparing to unpack .../049-r-base-core_4.3.2-1build1_amd64.deb ... 150s Unpacking r-base-core (4.3.2-1build1) ... 151s Selecting previously unselected package r-cran-littler. 151s Preparing to unpack .../050-r-cran-littler_0.3.19-1_amd64.deb ... 151s Unpacking r-cran-littler (0.3.19-1) ... 151s Selecting previously unselected package littler. 151s Preparing to unpack .../051-littler_0.3.19-1_all.deb ... 151s Unpacking littler (0.3.19-1) ... 151s Selecting previously unselected package node-normalize.css. 151s Preparing to unpack .../052-node-normalize.css_8.0.1-5_all.deb ... 151s Unpacking node-normalize.css (8.0.1-5) ... 151s Selecting previously unselected package r-cran-brio. 151s Preparing to unpack .../053-r-cran-brio_1.1.4-1_amd64.deb ... 151s Unpacking r-cran-brio (1.1.4-1) ... 151s Selecting previously unselected package r-cran-ps. 151s Preparing to unpack .../054-r-cran-ps_1.7.6-1_amd64.deb ... 151s Unpacking r-cran-ps (1.7.6-1) ... 151s Selecting previously unselected package r-cran-r6. 151s Preparing to unpack .../055-r-cran-r6_2.5.1-1_all.deb ... 151s Unpacking r-cran-r6 (2.5.1-1) ... 151s Selecting previously unselected package r-cran-processx. 151s Preparing to unpack .../056-r-cran-processx_3.8.3-1_amd64.deb ... 151s Unpacking r-cran-processx (3.8.3-1) ... 151s Selecting previously unselected package r-cran-callr. 151s Preparing to unpack .../057-r-cran-callr_3.7.3-2_all.deb ... 151s Unpacking r-cran-callr (3.7.3-2) ... 151s Selecting previously unselected package r-cran-cli. 151s Preparing to unpack .../058-r-cran-cli_3.6.2-1_amd64.deb ... 151s Unpacking r-cran-cli (3.6.2-1) ... 151s Selecting previously unselected package r-cran-codetools. 151s Preparing to unpack .../059-r-cran-codetools_0.2-19-1_all.deb ... 151s Unpacking r-cran-codetools (0.2-19-1) ... 151s Selecting previously unselected package r-cran-colorspace. 151s Preparing to unpack .../060-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 151s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 151s Selecting previously unselected package r-cran-crayon. 151s Preparing to unpack .../061-r-cran-crayon_1.5.2-1_all.deb ... 151s Unpacking r-cran-crayon (1.5.2-1) ... 151s Selecting previously unselected package r-cran-desc. 151s Preparing to unpack .../062-r-cran-desc_1.4.3-1_all.deb ... 151s Unpacking r-cran-desc (1.4.3-1) ... 151s Selecting previously unselected package r-cran-diffobj. 151s Preparing to unpack .../063-r-cran-diffobj_0.3.5-1_amd64.deb ... 151s Unpacking r-cran-diffobj (0.3.5-1) ... 151s Selecting previously unselected package r-cran-digest. 151s Preparing to unpack .../064-r-cran-digest_0.6.34-1_amd64.deb ... 151s Unpacking r-cran-digest (0.6.34-1) ... 151s Selecting previously unselected package r-cran-generics. 151s Preparing to unpack .../065-r-cran-generics_0.1.3-1_all.deb ... 151s Unpacking r-cran-generics (0.1.3-1) ... 151s Selecting previously unselected package r-cran-glue. 151s Preparing to unpack .../066-r-cran-glue_1.7.0-1_amd64.deb ... 151s Unpacking r-cran-glue (1.7.0-1) ... 151s Selecting previously unselected package r-cran-rlang. 151s Preparing to unpack .../067-r-cran-rlang_1.1.3-1_amd64.deb ... 151s Unpacking r-cran-rlang (1.1.3-1) ... 151s Selecting previously unselected package r-cran-lifecycle. 151s Preparing to unpack .../068-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 151s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 151s Selecting previously unselected package r-cran-magrittr. 151s Preparing to unpack .../069-r-cran-magrittr_2.0.3-1_amd64.deb ... 151s Unpacking r-cran-magrittr (2.0.3-1) ... 151s Selecting previously unselected package r-cran-fansi. 151s Preparing to unpack .../070-r-cran-fansi_1.0.5-1_amd64.deb ... 151s Unpacking r-cran-fansi (1.0.5-1) ... 151s Selecting previously unselected package r-cran-utf8. 151s Preparing to unpack .../071-r-cran-utf8_1.2.4-1_amd64.deb ... 151s Unpacking r-cran-utf8 (1.2.4-1) ... 152s Selecting previously unselected package r-cran-vctrs. 152s Preparing to unpack .../072-r-cran-vctrs_0.6.5-1_amd64.deb ... 152s Unpacking r-cran-vctrs (0.6.5-1) ... 152s Selecting previously unselected package r-cran-pillar. 152s Preparing to unpack .../073-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 152s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 152s Selecting previously unselected package r-cran-pkgconfig. 152s Preparing to unpack .../074-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 152s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 152s Selecting previously unselected package r-cran-tibble. 152s Preparing to unpack .../075-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 152s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 152s Selecting previously unselected package r-cran-withr. 152s Preparing to unpack .../076-r-cran-withr_2.5.0-1_all.deb ... 152s Unpacking r-cran-withr (2.5.0-1) ... 152s Selecting previously unselected package r-cran-tidyselect. 152s Preparing to unpack .../077-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 152s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 152s Selecting previously unselected package r-cran-dplyr. 152s Preparing to unpack .../078-r-cran-dplyr_1.1.4-1_amd64.deb ... 152s Unpacking r-cran-dplyr (1.1.4-1) ... 152s Selecting previously unselected package r-cran-evaluate. 152s Preparing to unpack .../079-r-cran-evaluate_0.23-1_all.deb ... 152s Unpacking r-cran-evaluate (0.23-1) ... 152s Selecting previously unselected package r-cran-farver. 152s Preparing to unpack .../080-r-cran-farver_2.1.1-1_amd64.deb ... 152s Unpacking r-cran-farver (2.1.1-1) ... 152s Selecting previously unselected package r-cran-fs. 152s Preparing to unpack .../081-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 152s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 152s Selecting previously unselected package r-cran-globals. 152s Preparing to unpack .../082-r-cran-globals_0.16.2-1_all.deb ... 152s Unpacking r-cran-globals (0.16.2-1) ... 152s Selecting previously unselected package r-cran-listenv. 152s Preparing to unpack .../083-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 152s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 152s Selecting previously unselected package r-cran-parallelly. 152s Preparing to unpack .../084-r-cran-parallelly_1.37.1-1_amd64.deb ... 152s Unpacking r-cran-parallelly (1.37.1-1) ... 152s Selecting previously unselected package r-cran-future. 152s Preparing to unpack .../085-r-cran-future_1.33.1+dfsg-1_all.deb ... 152s Unpacking r-cran-future (1.33.1+dfsg-1) ... 152s Selecting previously unselected package r-cran-future.apply. 152s Preparing to unpack .../086-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 152s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 152s Selecting previously unselected package r-cran-gtable. 152s Preparing to unpack .../087-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 152s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 152s Selecting previously unselected package r-cran-isoband. 152s Preparing to unpack .../088-r-cran-isoband_0.2.7-1_amd64.deb ... 152s Unpacking r-cran-isoband (0.2.7-1) ... 152s Selecting previously unselected package r-cran-mass. 152s Preparing to unpack .../089-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 152s Unpacking r-cran-mass (7.3-60.0.1-1) ... 152s Selecting previously unselected package r-cran-lattice. 152s Preparing to unpack .../090-r-cran-lattice_0.22-5-1_amd64.deb ... 152s Unpacking r-cran-lattice (0.22-5-1) ... 152s Selecting previously unselected package r-cran-nlme. 152s Preparing to unpack .../091-r-cran-nlme_3.1.164-1_amd64.deb ... 152s Unpacking r-cran-nlme (3.1.164-1) ... 152s Selecting previously unselected package r-cran-matrix. 152s Preparing to unpack .../092-r-cran-matrix_1.6-5-1_amd64.deb ... 152s Unpacking r-cran-matrix (1.6-5-1) ... 152s Selecting previously unselected package r-cran-mgcv. 152s Preparing to unpack .../093-r-cran-mgcv_1.9-1-1_amd64.deb ... 152s Unpacking r-cran-mgcv (1.9-1-1) ... 152s Selecting previously unselected package r-cran-labeling. 152s Preparing to unpack .../094-r-cran-labeling_0.4.3-1_all.deb ... 152s Unpacking r-cran-labeling (0.4.3-1) ... 152s Selecting previously unselected package r-cran-munsell. 152s Preparing to unpack .../095-r-cran-munsell_0.5.0-2build1_all.deb ... 152s Unpacking r-cran-munsell (0.5.0-2build1) ... 153s Selecting previously unselected package r-cran-rcolorbrewer. 153s Preparing to unpack .../096-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 153s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 153s Selecting previously unselected package r-cran-viridislite. 153s Preparing to unpack .../097-r-cran-viridislite_0.4.2-2_all.deb ... 153s Unpacking r-cran-viridislite (0.4.2-2) ... 153s Selecting previously unselected package r-cran-scales. 153s Preparing to unpack .../098-r-cran-scales_1.3.0-1_all.deb ... 153s Unpacking r-cran-scales (1.3.0-1) ... 153s Selecting previously unselected package r-cran-ggplot2. 153s Preparing to unpack .../099-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 153s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 153s Selecting previously unselected package r-cran-gridextra. 153s Preparing to unpack .../100-r-cran-gridextra_2.3-3build1_all.deb ... 153s Unpacking r-cran-gridextra (2.3-3build1) ... 153s Selecting previously unselected package r-cran-xfun. 153s Preparing to unpack .../101-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 153s Unpacking r-cran-xfun (0.41+dfsg-1) ... 153s Selecting previously unselected package r-cran-highr. 153s Preparing to unpack .../102-r-cran-highr_0.10+dfsg-1_all.deb ... 153s Unpacking r-cran-highr (0.10+dfsg-1) ... 153s Selecting previously unselected package r-cran-irlba. 153s Preparing to unpack .../103-r-cran-irlba_2.3.5.1-2_amd64.deb ... 153s Unpacking r-cran-irlba (2.3.5.1-2) ... 153s Selecting previously unselected package r-cran-jsonlite. 153s Preparing to unpack .../104-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 153s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 153s Selecting previously unselected package r-cran-yaml. 153s Preparing to unpack .../105-r-cran-yaml_2.3.8-1_amd64.deb ... 153s Unpacking r-cran-yaml (2.3.8-1) ... 153s Selecting previously unselected package libjs-mathjax. 153s Preparing to unpack .../106-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 153s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 154s Selecting previously unselected package r-cran-knitr. 154s Preparing to unpack .../107-r-cran-knitr_1.45+dfsg-1_all.deb ... 154s Unpacking r-cran-knitr (1.45+dfsg-1) ... 154s Selecting previously unselected package r-cran-matrixstats. 154s Preparing to unpack .../108-r-cran-matrixstats_1.2.0-1_amd64.deb ... 154s Unpacking r-cran-matrixstats (1.2.0-1) ... 154s Selecting previously unselected package r-cran-pkgbuild. 154s Preparing to unpack .../109-r-cran-pkgbuild_1.4.3-1_all.deb ... 154s Unpacking r-cran-pkgbuild (1.4.3-1) ... 154s Selecting previously unselected package r-cran-pkgkitten. 154s Preparing to unpack .../110-r-cran-pkgkitten_0.2.3-1_all.deb ... 154s Unpacking r-cran-pkgkitten (0.2.3-1) ... 154s Selecting previously unselected package r-cran-rprojroot. 154s Preparing to unpack .../111-r-cran-rprojroot_2.0.4-1_all.deb ... 154s Unpacking r-cran-rprojroot (2.0.4-1) ... 154s Selecting previously unselected package r-cran-pkgload. 154s Preparing to unpack .../112-r-cran-pkgload_1.3.4-1_all.deb ... 154s Unpacking r-cran-pkgload (1.3.4-1) ... 154s Selecting previously unselected package r-cran-rcpp. 154s Preparing to unpack .../113-r-cran-rcpp_1.0.12-1_amd64.deb ... 154s Unpacking r-cran-rcpp (1.0.12-1) ... 154s Selecting previously unselected package r-cran-plyr. 154s Preparing to unpack .../114-r-cran-plyr_1.8.9-1_amd64.deb ... 154s Unpacking r-cran-plyr (1.8.9-1) ... 154s Selecting previously unselected package r-cran-praise. 154s Preparing to unpack .../115-r-cran-praise_1.0.0-4build1_all.deb ... 154s Unpacking r-cran-praise (1.0.0-4build1) ... 154s Selecting previously unselected package r-cran-rcpparmadillo. 154s Preparing to unpack .../116-r-cran-rcpparmadillo_0.12.8.1.0-1_amd64.deb ... 154s Unpacking r-cran-rcpparmadillo (0.12.8.1.0-1) ... 154s Selecting previously unselected package r-cran-rematch2. 154s Preparing to unpack .../117-r-cran-rematch2_2.1.2-2build1_all.deb ... 154s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 154s Selecting previously unselected package 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Unpacking r-cran-testthat (3.2.1-1) ... 155s Selecting previously unselected package autopkgtest-satdep. 155s Preparing to unpack .../124-1-autopkgtest-satdep.deb ... 155s Unpacking autopkgtest-satdep (0) ... 155s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 155s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 155s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 155s Setting up libpaper1:amd64 (1.1.29) ... 155s 155s Creating config file /etc/papersize with new version 155s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 155s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 155s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 155s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 155s Setting up libdatrie1:amd64 (0.2.13-3) ... 155s Setting up libxcb-render0:amd64 (1.15-1) ... 155s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 155s Setting up unzip (6.0-28ubuntu3) ... 155s Setting up x11-common (1:7.7+23ubuntu2) ... 155s Setting up libdeflate0:amd64 (1.19-1) ... 155s Setting up libxcb-shm0:amd64 (1.15-1) ... 155s Setting up libpaper-utils (1.1.29) ... 155s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 155s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 155s Setting up zip (3.0-13) ... 155s Setting up libblas3:amd64 (3.12.0-3) ... 155s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 155s Setting up fonts-dejavu-mono (2.37-8) ... 155s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 155s Setting up fonts-dejavu-core (2.37-8) ... 155s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 155s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 155s Setting up libwebp7:amd64 (1.3.2-0.4) ... 155s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 155s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 155s Setting up libthai-data (0.1.29-2) ... 155s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 155s Setting up libjs-jquery 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Regenerating fonts cache... done. 158s Setting up libxft2:amd64 (2.3.6-1) ... 158s Setting up libtk8.6:amd64 (8.6.13-2) ... 158s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 158s Setting up libcairo2:amd64 (1.18.0-1) ... 158s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 158s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 158s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 158s Setting up r-base-core (4.3.2-1build1) ... 158s 158s Creating config file /etc/R/Renviron with new version 158s Setting up r-cran-crayon (1.5.2-1) ... 158s Setting up r-cran-labeling (0.4.3-1) ... 158s Setting up r-cran-lattice (0.22-5-1) ... 158s Setting up r-cran-ps (1.7.6-1) ... 158s Setting up r-cran-nlme (3.1.164-1) ... 158s Setting up r-cran-farver (2.1.1-1) ... 158s Setting up r-cran-viridislite (0.4.2-2) ... 158s Setting up r-cran-r6 (2.5.1-1) ... 158s Setting up r-cran-pkgkitten (0.2.3-1) ... 158s Setting up r-cran-magrittr (2.0.3-1) ... 158s Setting up r-cran-littler (0.3.19-1) ... 158s Setting up r-cran-fs (1.6.3+dfsg-1) ... 158s Setting up r-cran-rcpp (1.0.12-1) ... 158s Setting up r-cran-codetools (0.2-19-1) ... 158s Setting up r-cran-brio (1.1.4-1) ... 158s Setting up r-cran-diffobj (0.3.5-1) ... 158s Setting up r-cran-rlang (1.1.3-1) ... 158s Setting up r-cran-matrixstats (1.2.0-1) ... 158s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 158s Setting up littler (0.3.19-1) ... 158s Setting up r-cran-xfun (0.41+dfsg-1) ... 158s Setting up r-cran-withr (2.5.0-1) ... 158s Setting up r-cran-processx (3.8.3-1) ... 158s Setting up r-cran-praise (1.0.0-4build1) ... 158s Setting up r-cran-generics (0.1.3-1) ... 158s Setting up r-cran-digest (0.6.34-1) ... 158s Setting up r-cran-yaml (2.3.8-1) ... 158s Setting up r-cran-evaluate (0.23-1) ... 158s Setting up r-cran-highr (0.10+dfsg-1) ... 158s Setting up r-cran-fansi (1.0.5-1) ... 158s Setting up r-cran-mass (7.3-60.0.1-1) ... 158s Setting up r-cran-glue (1.7.0-1) ... 158s Setting up r-cran-cli (3.6.2-1) ... 158s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 158s Setting up r-cran-rprojroot (2.0.4-1) ... 158s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 158s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 158s Setting up r-cran-utf8 (1.2.4-1) ... 158s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 158s Setting up r-cran-parallelly (1.37.1-1) ... 158s Setting up r-cran-stringi (1.8.3-1) ... 158s Setting up r-cran-plyr (1.8.9-1) ... 158s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 158s Setting up r-cran-isoband (0.2.7-1) ... 158s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 158s Setting up r-cran-matrix (1.6-5-1) ... 158s Setting up r-cran-irlba (2.3.5.1-2) ... 158s Setting up r-cran-knitr (1.45+dfsg-1) ... 158s Setting up r-cran-mgcv (1.9-1-1) ... 158s Setting up r-cran-rcpparmadillo (0.12.8.1.0-1) ... 158s Setting up r-cran-globals (0.16.2-1) ... 158s Setting up r-cran-vctrs (0.6.5-1) ... 158s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 158s Setting up r-cran-stringr (1.5.1-1) ... 158s Setting up r-cran-callr (3.7.3-2) ... 158s Setting up r-cran-desc (1.4.3-1) ... 158s Setting up r-cran-munsell (0.5.0-2build1) ... 158s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 158s Setting up r-cran-future (1.33.1+dfsg-1) ... 158s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 158s Setting up r-cran-reshape2 (1.4.4-2build1) ... 158s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 158s Setting up r-cran-gridextra (2.3-3build1) ... 158s Setting up r-cran-scales (1.3.0-1) ... 158s Setting up r-cran-pkgbuild (1.4.3-1) ... 158s Setting up r-cran-dplyr (1.1.4-1) ... 158s Setting up r-cran-pkgload (1.3.4-1) ... 158s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 158s Setting up r-cran-rematch2 (2.1.2-2build1) ... 158s Setting up r-cran-waldo (0.5.2-1build1) ... 158s Setting up r-cran-sctransform (0.4.1-1) ... 158s Setting up r-cran-testthat (3.2.1-1) ... 158s Setting up autopkgtest-satdep (0) ... 158s Processing triggers for man-db (2.12.0-3) ... 159s Processing triggers for install-info (7.1-3) ... 159s Processing triggers for libc-bin (2.39-0ubuntu2) ... 164s (Reading database ... 86751 files and directories currently installed.) 164s Removing autopkgtest-satdep (0) ... 164s autopkgtest [13:59:26]: test run-unit-test: [----------------------- 164s BEGIN TEST testthat.R 164s 164s R version 4.3.2 (2023-10-31) -- "Eye Holes" 164s Copyright (C) 2023 The R Foundation for Statistical Computing 164s Platform: x86_64-pc-linux-gnu (64-bit) 164s 164s R is free software and comes with ABSOLUTELY NO WARRANTY. 164s You are welcome to redistribute it under certain conditions. 164s Type 'license()' or 'licence()' for distribution details. 164s 164s R is a collaborative project with many contributors. 164s Type 'contributors()' for more information and 164s 'citation()' on how to cite R or R packages in publications. 164s 164s Type 'demo()' for some demos, 'help()' for on-line help, or 164s 'help.start()' for an HTML browser interface to help. 164s Type 'q()' to quit R. 164s 165s > library(testthat) 165s > library(sctransform) 166s > 166s > test_check("sctransform") 166s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 166s 166s ══ Skipped tests (10) ══════════════════════════════════════════════════════════ 166s • On CRAN (10): 'test_denoising.R:4:3', 'test_generate.R:4:3', 166s 'test_utils.R:4:3', 'test_utils.R:48:3', 'test_utils.R:70:3', 166s 'test_utils.R:83:3', 'test_vst.R:4:3', 'test_vst.R:15:3', 'test_vst.R:31:3', 166s 'test_vst.R:46:3' 166s 166s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 166s > 167s autopkgtest [13:59:29]: test run-unit-test: -----------------------] 167s autopkgtest [13:59:29]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 167s run-unit-test PASS 167s autopkgtest [13:59:29]: test pkg-r-autopkgtest: preparing testbed 168s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 170s The following additional packages will be installed: 170s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 170s dctrl-tools g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 170s gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 170s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 170s libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 170s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 170s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 170s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 170s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0 170s libreadline-dev libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 170s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 170s rpcsvc-proto zlib1g-dev 170s Suggested packages: 170s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 170s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 170s gdb gcc-doc gcc-13-multilib gdb-x86-64-linux-gnu gfortran-multilib 170s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev 170s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 170s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 170s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 170s texlive-latex-recommended texlive-latex-extra texinfo 170s Recommended packages: 170s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 170s The following NEW packages will be installed: 170s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu 170s cpp-x86-64-linux-gnu dctrl-tools g++ g++-13 g++-13-x86-64-linux-gnu 170s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu 170s gfortran gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu 170s icu-devtools libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin 170s libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 170s libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 170s liblapack-dev liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 170s libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 170s libpng-dev libquadmath0 libreadline-dev libstdc++-13-dev libtirpc-dev 170s libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf 170s pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 170s 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. 170s Need to get 99.8 MB/99.8 MB of archives. 170s After this operation, 375 MB of additional disk space will be used. 170s Get:1 /tmp/autopkgtest.1p3176/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [744 B] 170s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 170s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 170s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 170s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 170s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 170s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 170s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 170s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 170s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 170s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 170s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 170s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 170s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 170s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 170s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 170s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 170s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 170s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 170s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 170s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 170s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 170s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 170s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 170s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 170s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 170s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 170s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 170s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 170s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 170s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 170s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 170s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 170s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 170s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 170s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 170s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 170s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 170s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 170s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 170s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 170s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 170s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 170s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 170s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 170s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 170s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 170s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 170s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 170s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 170s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 170s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 170s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 170s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 170s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 170s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 170s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 170s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 170s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 170s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 170s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 170s Get:62 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 170s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 171s Fetched 99.8 MB in 1s (135 MB/s) 171s Selecting previously unselected package libc-dev-bin. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86751 files and directories currently installed.) 171s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 171s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 171s Selecting previously unselected package linux-libc-dev:amd64. 171s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_amd64.deb ... 171s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 171s Selecting previously unselected package libcrypt-dev:amd64. 171s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 171s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 171s Selecting previously unselected package libtirpc-dev:amd64. 171s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 171s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 171s Selecting previously unselected package libnsl-dev:amd64. 171s Preparing to unpack .../04-libnsl-dev_1.3.0-3_amd64.deb ... 171s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 171s Selecting previously unselected package rpcsvc-proto. 171s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 171s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 171s Selecting previously unselected package libc6-dev:amd64. 171s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_amd64.deb ... 171s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 171s Selecting previously unselected package libisl23:amd64. 171s Preparing to unpack .../07-libisl23_0.26-3_amd64.deb ... 171s Unpacking libisl23:amd64 (0.26-3) ... 171s Selecting previously unselected package libmpc3:amd64. 171s Preparing to unpack .../08-libmpc3_1.3.1-1_amd64.deb ... 171s Unpacking libmpc3:amd64 (1.3.1-1) ... 171s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 171s Preparing to unpack .../09-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 171s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 172s Selecting previously unselected package cpp-13. 172s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 172s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 172s Selecting previously unselected package cpp-x86-64-linux-gnu. 172s Preparing to unpack .../11-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 172s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package cpp. 172s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 172s Unpacking cpp (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package libcc1-0:amd64. 172s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libitm1:amd64. 172s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libatomic1:amd64. 172s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libasan8:amd64. 172s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package liblsan0:amd64. 172s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libtsan2:amd64. 172s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libubsan1:amd64. 172s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libhwasan0:amd64. 172s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libquadmath0:amd64. 172s Preparing to unpack .../21-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 172s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 172s Selecting previously unselected package libgcc-13-dev:amd64. 172s Preparing to unpack .../22-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 172s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 172s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 172s Preparing to unpack .../23-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 172s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gcc-13. 173s Preparing to unpack .../24-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gcc-x86-64-linux-gnu. 173s Preparing to unpack .../25-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 173s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package gcc. 173s Preparing to unpack .../26-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 173s Unpacking gcc (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package libstdc++-13-dev:amd64. 173s Preparing to unpack .../27-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package g++-13-x86-64-linux-gnu. 173s Preparing to unpack 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dctrl-tools (2.24-3build2) ... 173s Selecting previously unselected package libgfortran-13-dev:amd64. 173s Preparing to unpack .../34-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 173s Preparing to unpack .../35-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gfortran-13. 173s Preparing to unpack .../36-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 173s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 173s Selecting previously unselected package gfortran-x86-64-linux-gnu. 173s Preparing to unpack .../37-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 173s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package gfortran. 174s Preparing to unpack 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Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 175s Selecting previously unselected package r-base-dev. 175s Preparing to unpack .../60-r-base-dev_4.3.2-1build1_all.deb ... 175s Unpacking r-base-dev (4.3.2-1build1) ... 175s Selecting previously unselected package pkg-r-autopkgtest. 175s Preparing to unpack .../61-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 175s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 175s Selecting previously unselected package autopkgtest-satdep. 175s Preparing to unpack .../62-2-autopkgtest-satdep.deb ... 175s Unpacking autopkgtest-satdep (0) ... 175s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 175s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 175s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 175s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 175s Setting up libpkgconf3:amd64 (1.8.1-2) ... 175s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 175s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 175s Setting up libmpc3:amd64 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(libblas.so-x86_64-linux-gnu) in auto mode 175s Setting up dctrl-tools (2.24-3build2) ... 175s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 175s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up pkgconf:amd64 (1.8.1-2) ... 175s Setting up liblapack-dev:amd64 (3.12.0-3) ... 175s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 175s Setting up pkg-config:amd64 (1.8.1-2) ... 175s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 175s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 175s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 175s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 175s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 175s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 175s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 175s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 175s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 175s Setting up cpp-13 (13.2.0-17ubuntu2) ... 175s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up libreadline-dev:amd64 (8.2-3) ... 175s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up gcc-13 (13.2.0-17ubuntu2) ... 175s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 175s Setting up cpp (4:13.2.0-7ubuntu1) ... 175s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 175s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up libpng-dev:amd64 (1.6.43-1) ... 175s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 175s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up gcc (4:13.2.0-7ubuntu1) ... 175s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 175s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up g++-13 (13.2.0-17ubuntu2) ... 175s Setting up gfortran (4:13.2.0-7ubuntu1) ... 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 175s Setting up g++ (4:13.2.0-7ubuntu1) ... 175s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 175s Setting up build-essential (12.10ubuntu1) ... 175s Setting up r-base-dev (4.3.2-1build1) ... 175s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 175s Setting up autopkgtest-satdep (0) ... 175s Processing triggers for man-db (2.12.0-3) ... 176s Processing triggers for install-info (7.1-3) ... 176s Processing triggers for libc-bin (2.39-0ubuntu2) ... 178s (Reading database ... 90458 files and directories currently installed.) 178s Removing autopkgtest-satdep (0) ... 178s autopkgtest [13:59:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 178s autopkgtest [13:59:40]: test pkg-r-autopkgtest: [----------------------- 178s Test: Try to load the R library sctransform 178s 178s R version 4.3.2 (2023-10-31) -- "Eye Holes" 178s Copyright (C) 2023 The R Foundation for Statistical Computing 178s Platform: x86_64-pc-linux-gnu (64-bit) 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > library('sctransform') 180s > 180s > 180s Other tests are currently unsupported! 180s They will be progressively added. 180s autopkgtest [13:59:42]: test pkg-r-autopkgtest: -----------------------] 180s autopkgtest [13:59:42]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 180s pkg-r-autopkgtest PASS 181s autopkgtest [13:59:43]: @@@@@@@@@@@@@@@@@@@@ summary 181s run-unit-test PASS 181s pkg-r-autopkgtest PASS 191s Creating nova instance adt-noble-amd64-r-cran-sctransform-20240320-135641-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240319.img (UUID 7b50f403-c8dd-4ed1-a25c-18c4799f5a5b)...